1 | program concatnc |
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2 | |
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3 | |
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4 | ! ******************************************************** |
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5 | ! Program to concatenate data from Netcdf "diagfi" files, |
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6 | ! outputs from the martian GCM |
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7 | ! input : diagfi.nc / concat.nc / stats.nc kind of files |
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8 | ! author: Y. Wanherdrick |
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9 | ! + aps(), bps() and phisinit() are now also written |
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10 | ! to output file (E. Millour, september 2006) |
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11 | ! if available (F. Forget, october 2006) |
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12 | ! + handle 1D data (EM, January 2007) |
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13 | ! + ap(), bp() (F. Forget, February 2008) |
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14 | ! + handle the possibility that number of GCM layers (aps, bps |
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15 | ! or sigma) may be different from number of vertical levels |
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16 | ! of data (which is the case for outputs from 'zrecast') |
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17 | ! (EM, April 2010) |
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18 | ! + handle absence of ap() and bp() if aps and bps are available |
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19 | ! (case of stats file) FF, November 2011 |
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20 | ! + read and write controle field, if available. TN, October 2013 |
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21 | ! ******************************************************** |
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22 | |
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23 | implicit none |
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24 | |
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25 | include "netcdf.inc" ! NetCDF definitions |
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26 | |
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27 | character (len=80), dimension(1000) :: file |
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28 | ! file(): input file(s) names(s) |
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29 | character (len=30), dimension(16) :: notconcat |
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30 | ! notconcat(): names of the (16) variables that won't be concatenated |
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31 | character (len=50), dimension(:), allocatable :: var |
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32 | ! var(): name(s) of variable(s) that will be concatenated |
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33 | character (len=50) :: tmpvar,tmpfile,title,units |
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34 | ! tmpvar(): used to temporarily store a variable name |
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35 | ! tmpfile(): used to temporarily store a file name |
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36 | ! title(): [netcdf] title attribute |
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37 | ! units(): [netcdf] units attribute |
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38 | character (len=100) :: filename,vartmp |
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39 | ! filename(): output file name |
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40 | ! vartmp(): temporary variable name (read from netcdf input file) |
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41 | !character (len=1) :: ccopy |
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42 | ! ccpy: 'y' or 'n' answer |
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43 | character (len=4) :: axis |
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44 | ! axis: "ls" or "sol" |
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45 | integer :: nid,ierr,miss |
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46 | ! nid: [netcdf] file ID # |
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47 | ! ierr: [netcdf] subroutine returned error code |
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48 | ! miss: [netcdf] subroutine returned error code |
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49 | integer :: i,j,k,inter |
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50 | ! for various loops |
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51 | integer :: varid |
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52 | ! varid: [netcdf] variable ID # |
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53 | integer :: memolatlen=0,memolonlen=0,memoaltlen=0 |
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54 | ! memolatlen: # of elements of lat(), read from the first input file |
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55 | ! memolonlen: # of elements of lon(), read from the first input file |
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56 | ! memoaltlen: # of elements of alt(), read from the first input file |
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57 | real, dimension(:), allocatable:: lat,lon,alt,ctl,time |
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58 | ! lat(): array, stores latitude coordinates |
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59 | ! lon(): array, stores longitude coordinates |
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60 | ! alt(): array, stores altitude coordinates |
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61 | ! ctl(): array, stores controle coordinates |
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62 | ! time(): array, stores time coordinates |
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63 | integer :: nbvar,nbfile,nbvarfile,ndim |
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64 | ! nbvar: # of variables to concatenate |
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65 | ! nbfile: # number of input file(s) |
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66 | ! nbvarfile: total # of variables in an input file |
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67 | ! ndim: [netcdf] # (3 or 4) of dimensions (for variables) |
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68 | integer :: latdim,londim,altdim,ctldim,timedim |
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69 | ! latdim: [netcdf] "latitude" dim ID |
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70 | ! londim: [netcdf] "longitude" dim ID |
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71 | ! altdim: [netcdf] "altdim" dim ID |
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72 | ! ctldim: [netcdf] "ctldim" dim ID |
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73 | ! timedim: [netcdf] "timedim" dim ID |
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74 | integer :: gcmlayerdim ! NetCDF dimension ID for # of layers in GCM |
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75 | integer :: latvar,lonvar,altvar,ctlvar,timevar |
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76 | ! latvar: [netcdf] ID of "latitude" variable |
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77 | ! lonvar: [netcdf] ID of "longitude" variable |
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78 | ! altvar: [netcdf] ID of "altitude" variable |
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79 | ! ctlvar: [netcdf] ID of "controle" variable |
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80 | ! timevar: [netcdf] ID of "Time" variable |
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81 | integer :: latlen,lonlen,altlen,ctllen,timelen |
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82 | ! latlen: # of elements of lat() array |
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83 | ! lonlen: # of elements of lon() array |
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84 | ! altlen: # of elements of alt() array |
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85 | ! ctllen: # of elements of ctl() array |
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86 | ! timelen: # of elemnets of time() array |
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87 | integer :: GCM_layers ! number of GCM atmospheric layers (may not be |
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88 | ! same as altlen if file is an output of zrecast) |
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89 | integer :: nout,latdimout,londimout,altdimout,timedimout,timevarout |
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90 | ! nout: [netcdf] output file ID |
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91 | ! latdimout: [netcdf] output latitude (dimension) ID |
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92 | ! londimout: [netcdf] output longitude (dimension) ID |
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93 | ! altdimout: [netcdf] output altitude (dimension) ID |
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94 | ! timedimout: [netcdf] output time (dimension) ID |
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95 | ! timevarout: [netcdf] ID of output "Time" variable |
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96 | integer :: layerdimout ! NetCDF dimension ID for # of layers in GCM |
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97 | integer :: interlayerdimout ! dimension ID for # of interlayers in GCM |
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98 | integer :: reptime,rep,varidout |
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99 | ! reptime: total length of concatenated time() arrays |
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100 | ! rep: # number of elements of a time() array to write to the output file |
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101 | ! varidout: [netcdf] variable ID # (of a variable to write to the output file) |
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102 | integer :: Nnotconcat,var_ok |
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103 | ! Nnotconcat: # of (leading)variables that won't be concatenated |
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104 | ! var_ok: flag (0 or 1) |
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105 | integer, dimension(4) :: corner,edges,dim |
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106 | ! corner: [netcdf] |
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107 | ! edges: [netcdf] |
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108 | ! dim: [netcdf] |
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109 | real, dimension(:,:,:,:), allocatable :: var3d |
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110 | ! var3D(,,,): 4D array to store a field |
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111 | real :: memotime |
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112 | ! memotime: (cumulative) time value, in martian days (sols) |
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113 | real :: missing |
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114 | !PARAMETER(missing=1E+20) |
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115 | ! missing: [netcdf] to handle "missing" values when reading/writing files |
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116 | real, dimension(2) :: valid_range |
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117 | ! valid_range(2): [netcdf] interval in which a value is considered valid |
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118 | |
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119 | !============================================================================== |
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120 | ! 1.1. Get input file name(s) |
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121 | !============================================================================== |
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122 | write(*,*) |
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123 | write(*,*) "-- Program written specifically for NetCDF 'diagfi' files from the martian GCM --" |
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124 | write(*,*) |
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125 | write(*,*) "which files do you want to use?" |
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126 | write(*,*) "<Enter> when list ok" |
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127 | |
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128 | nbfile=0 |
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129 | read(*,'(a50)') tmpfile |
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130 | do While (len_trim(tmpfile).ne.0) |
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131 | nbfile=nbfile+1 |
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132 | file(nbfile)=tmpfile |
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133 | read(*,'(a50)') tmpfile |
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134 | enddo |
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135 | |
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136 | if(nbfile==0) then |
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137 | write(*,*) "no file... game over" |
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138 | stop "" |
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139 | endif |
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140 | |
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141 | !============================================================================== |
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142 | ! 1.2. Ask for starting day value (memotime) |
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143 | !============================================================================== |
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144 | |
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145 | write(*,*) |
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146 | !write(*,*) "Beginning day of the first specified file?" |
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147 | write(*,*) "Starting day of the run stored in the first input file?" |
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148 | write(*,*) " (Obsolete if the controle field is present, answer any number)" |
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149 | write(*,*) "(e.g.: 100 if that run started at time=100 sols)" |
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150 | read(*,*) memotime |
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151 | |
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152 | !============================================================================== |
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153 | ! 1.3. Open the first input file |
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154 | !============================================================================== |
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155 | |
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156 | ierr = NF_OPEN(file(1),NF_NOWRITE,nid) |
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157 | if (ierr.NE.NF_NOERR) then |
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158 | write(*,*) 'ERROR: Pb opening file '//file(1) |
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159 | stop "" |
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160 | endif |
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161 | |
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162 | ierr=NF_INQ_NVARS(nid,nbvarfile) |
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163 | ! nbvarfile now set to be the (total) number of variables in file |
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164 | |
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165 | !============================================================================== |
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166 | ! 1.4. Ask for (output) "Time" axis type |
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167 | !============================================================================== |
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168 | |
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169 | write(*,*) "Warning: to read the result with grads, choose sol" |
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170 | write(*,*) "Warning: use ferret to read the non linear scale ls" |
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171 | write(*,*) "Which time axis should be given in the output? (sol/ls)" |
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172 | read(*,*) axis |
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173 | ! loop as long as axis is neither "sol" nor "ls" |
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174 | do while ((axis/="sol").AND.(axis/="ls")) |
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175 | read(*,*) axis |
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176 | enddo |
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177 | |
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178 | ! The following variables don't need to be concatenated |
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179 | notconcat(1)='Time' |
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180 | notconcat(2)='controle' |
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181 | notconcat(3)='rlonu' |
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182 | notconcat(4)='latitude' |
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183 | notconcat(5)='longitude' |
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184 | notconcat(6)='altitude' |
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185 | notconcat(7)='rlatv' |
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186 | notconcat(8)='aps' |
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187 | notconcat(9)='bps' |
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188 | notconcat(10)='ap' |
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189 | notconcat(11)='bp' |
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190 | notconcat(12)='cu' |
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191 | notconcat(13)='cv' |
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192 | notconcat(14)='aire' |
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193 | notconcat(15)='phisinit' |
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194 | notconcat(16)='soildepth' |
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195 | |
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196 | |
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197 | !============================================================================== |
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198 | ! 1.5. Get (and check) list of variables to concatenate |
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199 | !============================================================================== |
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200 | write(*,*) |
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201 | Nnotconcat=0 |
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202 | do i=1,nbvarfile |
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203 | ierr=NF_INQ_VARNAME(nid,i,vartmp) |
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204 | ! vartmp now contains the "name" of variable of ID # i |
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205 | var_ok=0 |
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206 | do inter=1,size(notconcat) |
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207 | if (vartmp.eq.notconcat(inter)) then |
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208 | var_ok=1 |
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209 | Nnotconcat=Nnotconcat+1 |
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210 | endif |
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211 | enddo |
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212 | if (var_ok.eq.0) write(*,*) trim(vartmp) |
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213 | enddo |
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214 | |
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215 | ! Nnotconcat: # of variables that won't be concatenated |
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216 | ! nbvarfile: total # of variables in file |
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217 | allocate(var(nbvarfile-Nnotconcat)) |
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218 | |
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219 | |
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220 | write(*,*) |
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221 | write(*,*) "which variables do you want to concatenate?" |
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222 | write(*,*) "all / list of <variables> (separated by <Enter>s)" |
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223 | write(*,*) "(an empty line , i.e: just <Enter>, implies end of list)" |
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224 | nbvar=0 |
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225 | read(*,'(a50)') tmpvar |
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226 | do while ((tmpvar/=' ').AND.(trim(tmpvar)/='all')) |
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227 | nbvar=nbvar+1 |
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228 | var(nbvar)=tmpvar |
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229 | read(*,'(a50)') tmpvar |
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230 | enddo |
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231 | |
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232 | if (tmpvar=="all") then |
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233 | if (axis=="ls") then |
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234 | ! write(*,*) "Do you want to keep the original file? (y/n)" |
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235 | ! read(*,*) ccopy |
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236 | ! if ((ccopy=="n").or.(ccopy=="N")) then |
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237 | ! do i=1,nbfile |
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238 | ! ierr=NF_CLOSE(nid) |
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239 | ! ierr = NF_OPEN(file(1),NF_WRITE,nid) |
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240 | ! call change_time_axis(nid,ierr) |
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241 | ! ierr=NF_CLOSE(nid) |
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242 | ! STOP "" |
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243 | ! enddo |
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244 | ! else |
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245 | nbvar=nbvarfile-Nnotconcat |
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246 | do j=Nnotconcat+1,nbvarfile |
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247 | ierr=nf_inq_varname(nid,j,var(j-Nnotconcat)) |
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248 | enddo |
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249 | ! endif ! of if ((ccopy=="n").or.(ccopy=="N")) |
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250 | endif ! of if (axis=="ls") |
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251 | ! Variables names from the file are catched |
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252 | nbvar=nbvarfile-Nnotconcat |
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253 | j=1 |
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254 | do i=1,nbvarfile |
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255 | ierr=nf_inq_varname(nid,i,vartmp) |
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256 | var_ok=0 |
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257 | do inter=1,size(notconcat) |
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258 | if (vartmp.eq.notconcat(inter)) then |
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259 | var_ok=1 |
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260 | endif |
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261 | enddo |
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262 | if (var_ok.eq.0) then |
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263 | if (j .gt. nbvar) then |
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264 | write(*,*) "PROBLEM HERE !", var |
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265 | stop |
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266 | endif |
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267 | var(j) = vartmp |
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268 | write(*,'(a9,1x,i2,1x,a1,1x,a50)') "variable ",j,":",var(j) |
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269 | j=j+1 |
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270 | endif |
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271 | enddo |
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272 | else if(nbvar==0) then |
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273 | write(*,*) "no variable... game over" |
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274 | stop "" |
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275 | endif ! of if (tmpvar=="all") |
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276 | |
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277 | ! Name of the new file |
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278 | !========================================================== |
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279 | !filename=var(1) |
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280 | !do i=2, nbvar |
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281 | ! filename=trim(adjustl(filename))//"_"//var(i) |
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282 | !enddo |
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283 | !filename=trim(adjustl(filename))//".nc" |
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284 | |
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285 | !============================================================================== |
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286 | ! 1.6. Get output file name |
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287 | !============================================================================== |
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288 | filename="concat.nc" |
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289 | |
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290 | |
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291 | !============================================================================== |
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292 | ! 2. Concatenate input file(s) into output file |
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293 | !============================================================================== |
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294 | |
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295 | reptime=0 |
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296 | |
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297 | do i=1,nbfile |
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298 | |
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299 | !============================================================================== |
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300 | ! 2.1. Open input file |
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301 | !============================================================================== |
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302 | |
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303 | if (i/=1) then |
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304 | write(*,*) |
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305 | write(*,*) "opening "//trim(file(i))//"..." |
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306 | ierr = NF_OPEN(file(i),NF_NOWRITE,nid) |
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307 | if (ierr.NE.NF_NOERR) then |
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308 | write(*,*) 'ERROR: Pb opening file '//file(i) |
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309 | write(*,*) NF_STRERROR(ierr) |
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310 | stop "" |
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311 | endif |
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312 | endif |
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313 | |
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314 | !============================================================================== |
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315 | ! 2.2. Read (and check) dimensions of variables from input file |
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316 | !============================================================================== |
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317 | |
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318 | ierr=NF_INQ_DIMID(nid,"latitude",latdim) |
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319 | ierr=NF_INQ_VARID(nid,"latitude",latvar) |
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320 | if (ierr.NE.NF_NOERR) then |
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321 | write(*,*) 'ERROR: Field <latitude> is missing in file'//file(i) |
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322 | stop "" |
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323 | endif |
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324 | ierr=NF_INQ_DIMLEN(nid,latdim,latlen) |
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325 | ! write(*,*) "latlen: ",latlen |
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326 | |
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327 | ierr=NF_INQ_DIMID(nid,"longitude",londim) |
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328 | ierr=NF_INQ_VARID(nid,"longitude",lonvar) |
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329 | if (ierr.NE.NF_NOERR) then |
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330 | write(*,*) 'ERROR: Field <longitude> is missing in file'//file(i) |
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331 | stop "" |
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332 | endif |
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333 | ierr=NF_INQ_DIMLEN(nid,londim,lonlen) |
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334 | ! write(*,*) "lonlen: ",lonlen |
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335 | |
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336 | ierr=NF_INQ_DIMID(nid,"altitude",altdim) |
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337 | ierr=NF_INQ_VARID(nid,"altitude",altvar) |
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338 | if (ierr.NE.NF_NOERR) then |
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339 | write(*,*) 'ERROR: Field <altitude> is missing in file'//file(i) |
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340 | stop "" |
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341 | endif |
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342 | ierr=NF_INQ_DIMLEN(nid,altdim,altlen) |
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343 | ! write(*,*) "altlen: ",altlen |
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344 | |
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345 | ierr=NF_INQ_DIMID(nid,"index",ctldim) |
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346 | ierr=NF_INQ_VARID(nid,"controle",ctlvar) |
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347 | if (ierr.NE.NF_NOERR) then |
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348 | write(*,*) 'Field <controle> is missing in file'//file |
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349 | ctllen=0 |
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350 | !stop "" |
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351 | else |
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352 | ierr=NF_INQ_DIMLEN(nid,ctldim,ctllen) |
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353 | endif |
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354 | ! write(*,*) "controle: ",controle |
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355 | |
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356 | ! load size of aps() or sigma() (in case it is not altlen) |
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357 | ! default is that GCM_layers=altlen |
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358 | ! but for outputs of zrecast, it may be a different value |
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359 | ierr=NF_INQ_DIMID(nid,"GCM_layers",gcmlayerdim) |
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360 | if (ierr.ne.NF_NOERR) then |
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361 | ! didn't find a GCM_layers dimension; therefore we have: |
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362 | GCM_layers=altlen |
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363 | else |
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364 | ! load value of GCM_layers |
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365 | ierr=NF_INQ_DIMLEN(nid,gcmlayerdim,GCM_layers) |
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366 | endif |
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367 | ! write(*,*) "GCM_layers=",GCM_layers |
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368 | |
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369 | !============================================================================== |
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370 | ! 2.3. Read (and check compatibility of) dimensions of |
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371 | ! variables from input file |
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372 | !============================================================================== |
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373 | |
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374 | if (i==1) then ! First call; initialize/allocate |
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375 | memolatlen=latlen |
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376 | memolonlen=lonlen |
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377 | memoaltlen=altlen |
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378 | allocate(lat(latlen)) |
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379 | allocate(lon(lonlen)) |
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380 | allocate(alt(altlen)) |
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381 | allocate(ctl(ctllen)) |
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382 | #ifdef NC_DOUBLE |
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383 | ierr = NF_GET_VAR_DOUBLE(nid,latvar,lat) |
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384 | ierr = NF_GET_VAR_DOUBLE(nid,lonvar,lon) |
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385 | ierr = NF_GET_VAR_DOUBLE(nid,altvar,alt) |
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386 | if (ctllen .ne. -1) ierr = NF_GET_VAR_DOUBLE(nid,ctlvar,ctl) |
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387 | #else |
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388 | ierr = NF_GET_VAR_REAL(nid,latvar,lat) |
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389 | ierr = NF_GET_VAR_REAL(nid,lonvar,lon) |
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390 | ierr = NF_GET_VAR_REAL(nid,altvar,alt) |
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391 | if (ctllen .ne. -1) ierr = NF_GET_VAR_REAL(nid,ctlvar,ctl) |
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392 | #endif |
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393 | if (ctllen .ne. -1) then |
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394 | if (modulo(int(memotime),669)/=modulo(int(ctl(4)),669)) then |
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395 | write(*,'(2(A,I4),A)') "WARNING: Starting day of the run is not ",& |
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396 | modulo(int(memotime),669)," but ",modulo(int(ctl(4)),669),"!!" |
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397 | write(*,*) "Starting day of the run has been corrected." |
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398 | memotime=float(modulo(int(ctl(4)),669)) + ctl(27) |
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399 | ctl(4) = 0. |
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400 | ctl(27) = 0. |
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401 | endif |
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402 | endif |
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403 | ! Initialize output file's lat,lon,alt and time dimensions |
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404 | call initiate (filename,lat,lon,alt,ctl,GCM_layers,nout,& |
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405 | latdimout,londimout,altdimout,timedimout,& |
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406 | layerdimout,interlayerdimout,timevarout) |
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407 | ! Initialize output file's aps,bps,ap,bp and phisinit variables |
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408 | call init2(nid,lonlen,latlen,altlen,GCM_layers,& |
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409 | nout,londimout,latdimout,altdimout,& |
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410 | layerdimout,interlayerdimout) |
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411 | |
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412 | else ! Not a first call, |
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413 | ! Check that latitude,longitude and altitude of current input file |
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414 | ! are identical to those of the output file |
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415 | if (memolatlen/=latlen) then |
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416 | write(*,*) "ERROR: Not the same latitude axis" |
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417 | stop "" |
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418 | else if (memolonlen/=lonlen) then |
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419 | write(*,*) "ERROR: Not the same longitude axis" |
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420 | stop "" |
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421 | else if (memoaltlen/=altlen) then |
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422 | write(*,*) "ERROR: Not the same altitude axis" |
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423 | stop "" |
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424 | endif |
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425 | endif ! of if (i==1) |
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426 | |
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427 | !============================================================================== |
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428 | ! 2.4. Handle "Time" dimension from input file |
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429 | !============================================================================== |
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430 | |
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431 | !============================================================================== |
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432 | ! 2.4.1 Read "Time" dimension from input file |
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433 | !============================================================================== |
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434 | ierr=NF_INQ_DIMID(nid,"Time",timedim) |
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435 | if (ierr.NE.NF_NOERR) then |
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436 | write(*,*) 'ERROR: Dimension <Time> is missing in file'//file(i) |
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437 | stop "" |
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438 | endif |
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439 | ierr=NF_INQ_VARID(nid,"Time",timevar) |
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440 | if (ierr.NE.NF_NOERR) then |
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441 | write(*,*) 'ERROR: Field <Time> is missing in file'//file(i) |
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442 | stop "" |
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443 | endif |
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444 | ierr=NF_INQ_DIMLEN(nid,timedim,timelen) |
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445 | ! write(*,*) "timelen: ",timelen |
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446 | |
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447 | ! allocate time() array and fill it with values from input file |
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448 | allocate(time(timelen)) |
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449 | |
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450 | #ifdef NC_DOUBLE |
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451 | ierr = NF_GET_VAR_DOUBLE(nid,timevar,time) |
---|
452 | #else |
---|
453 | ierr = NF_GET_VAR_REAL(nid,timevar,time) |
---|
454 | #endif |
---|
455 | |
---|
456 | !============================================================================== |
---|
457 | ! 2.4.2 Write/extend "Time" dimension/values in output file |
---|
458 | !============================================================================== |
---|
459 | |
---|
460 | rep=0 |
---|
461 | write(*,*) |
---|
462 | write(*,'(a3,1x,f6.1)') "Sol",memotime |
---|
463 | |
---|
464 | ! Add (memotime) offset and write "concatenated" time values to output file |
---|
465 | do k=reptime+1,reptime+timelen |
---|
466 | rep=rep+1 |
---|
467 | #ifdef NC_DOUBLE |
---|
468 | ierr= NF_PUT_VARA_DOUBLE(nout,timevarout,k,1,memotime+time(rep)) |
---|
469 | #else |
---|
470 | ierr= NF_PUT_VARA_REAL(nout,timevarout,k,1,memotime+time(rep)) |
---|
471 | #endif |
---|
472 | enddo |
---|
473 | ! Compute new time offset (for further concatenations) |
---|
474 | memotime=memotime+time(timelen) |
---|
475 | |
---|
476 | !============================================================================== |
---|
477 | ! 2.5 Read/write variables |
---|
478 | !============================================================================== |
---|
479 | |
---|
480 | do j=1,nbvar ! loop on variables to read/write |
---|
481 | |
---|
482 | !============================================================================== |
---|
483 | ! 2.5.1 Check that variable to be read existe in input file |
---|
484 | !============================================================================== |
---|
485 | |
---|
486 | write(*,*) "variable ",var(j) |
---|
487 | ierr=nf_inq_varid(nid,var(j),varid) |
---|
488 | if (ierr.NE.NF_NOERR) then |
---|
489 | write(*,*) 'ERROR: Field <',var(j),'> not found in file'//file(i) |
---|
490 | stop "" |
---|
491 | endif |
---|
492 | ierr=nf_inq_varndims(nid,varid,ndim) |
---|
493 | |
---|
494 | !============================================================================== |
---|
495 | ! 2.5.2 Prepare things in order to read/write the variable |
---|
496 | !============================================================================== |
---|
497 | |
---|
498 | ! build dim(),corner() and edges() arrays |
---|
499 | ! and allocate var3d() array |
---|
500 | if (ndim==1) then |
---|
501 | allocate(var3d(timelen,1,1,1)) |
---|
502 | dim(1)=timedimout |
---|
503 | |
---|
504 | ! start indexes (where data values will be written) |
---|
505 | corner(1)=reptime+1 |
---|
506 | corner(2)=1 |
---|
507 | corner(3)=1 |
---|
508 | corner(4)=1 |
---|
509 | |
---|
510 | ! length (along dimensions) of block of data to be written |
---|
511 | edges(1)=timelen |
---|
512 | edges(2)=1 |
---|
513 | edges(3)=1 |
---|
514 | edges(4)=1 |
---|
515 | |
---|
516 | else if (ndim==3) then |
---|
517 | allocate(var3d(lonlen,latlen,timelen,1)) |
---|
518 | dim(1)=londimout |
---|
519 | dim(2)=latdimout |
---|
520 | dim(3)=timedimout |
---|
521 | |
---|
522 | ! start indexes (where data values will be written) |
---|
523 | corner(1)=1 |
---|
524 | corner(2)=1 |
---|
525 | corner(3)=reptime+1 |
---|
526 | corner(4)=1 |
---|
527 | |
---|
528 | ! length (along dimensions) of block of data to be written |
---|
529 | edges(1)=lonlen |
---|
530 | edges(2)=latlen |
---|
531 | edges(3)=timelen |
---|
532 | edges(4)=1 |
---|
533 | |
---|
534 | else if (ndim==4) then |
---|
535 | allocate(var3d(lonlen,latlen,altlen,timelen)) |
---|
536 | dim(1)=londimout |
---|
537 | dim(2)=latdimout |
---|
538 | dim(3)=altdimout |
---|
539 | dim(4)=timedimout |
---|
540 | |
---|
541 | ! start indexes (where data values will be written) |
---|
542 | corner(1)=1 |
---|
543 | corner(2)=1 |
---|
544 | corner(3)=1 |
---|
545 | corner(4)=reptime+1 |
---|
546 | |
---|
547 | ! length (along dimensions) of block of data to be written |
---|
548 | edges(1)=lonlen |
---|
549 | edges(2)=latlen |
---|
550 | edges(3)=altlen |
---|
551 | edges(4)=timelen |
---|
552 | endif |
---|
553 | |
---|
554 | if (i==1) then ! First call: write some definitions to output file |
---|
555 | units=" " |
---|
556 | title=" " |
---|
557 | ierr=nf_get_att_text(nid,varid,"title",title) |
---|
558 | ierr=nf_get_att_text(nid,varid,"units",units) |
---|
559 | call def_var(nout,var(j),title,units,ndim,dim,varidout,ierr) |
---|
560 | else |
---|
561 | ierr=NF_INQ_VARID(nout,var(j),varidout) |
---|
562 | endif |
---|
563 | |
---|
564 | !============================================================================== |
---|
565 | ! 2.5.3 Read from input file and write (append) to the output file |
---|
566 | !============================================================================== |
---|
567 | |
---|
568 | #ifdef NC_DOUBLE |
---|
569 | ierr = NF_GET_VAR_DOUBLE(nid,varid,var3d) |
---|
570 | ierr= NF_PUT_VARA_DOUBLE(nout,varidout,corner,edges,var3d) |
---|
571 | miss=NF_GET_ATT_DOUBLE(nid,varid,"missing_value",missing) |
---|
572 | miss=NF_GET_ATT_DOUBLE(nid,varid,"valid_range",valid_range) |
---|
573 | #else |
---|
574 | ierr = NF_GET_VAR_REAL(nid,varid,var3d) |
---|
575 | ierr= NF_PUT_VARA_REAL(nout,varidout,corner,edges,var3d) |
---|
576 | miss=NF_GET_ATT_REAL(nid,varid,"missing_value",missing) |
---|
577 | miss=NF_GET_ATT_REAL(nid,varid,"valid_range",valid_range) |
---|
578 | #endif |
---|
579 | |
---|
580 | if (ierr.ne.NF_NOERR) then |
---|
581 | write(*,*) 'PUT_VAR ERROR: ',NF_STRERROR(ierr) |
---|
582 | stop "" |
---|
583 | endif |
---|
584 | |
---|
585 | ! In case there is a "valid_range" attribute |
---|
586 | ! Write "valid_range" and "missing_value" attributes in output file |
---|
587 | if (miss.eq.NF_NOERR) then |
---|
588 | call missing_value(nout,varidout,valid_range,missing) |
---|
589 | endif |
---|
590 | |
---|
591 | ! free var3d() array |
---|
592 | deallocate(var3d) |
---|
593 | |
---|
594 | enddo ! of do j=1,nbvar |
---|
595 | |
---|
596 | ! Free time() and compute/store array length (for further concatenations) |
---|
597 | deallocate(time) |
---|
598 | reptime=reptime+timelen |
---|
599 | |
---|
600 | ! Close input file |
---|
601 | ierr=nf_close(nid) |
---|
602 | |
---|
603 | enddo ! of i=1,nbfile |
---|
604 | |
---|
605 | !============================================================================== |
---|
606 | ! 3. If required, change time axis (from sols to Ls) |
---|
607 | !============================================================================== |
---|
608 | |
---|
609 | if (axis=="ls") then |
---|
610 | call change_time_axis(nout,ierr) |
---|
611 | endif |
---|
612 | |
---|
613 | ! Close output file |
---|
614 | ierr=NF_CLOSE(nout) |
---|
615 | |
---|
616 | contains |
---|
617 | |
---|
618 | !****************************************************************************** |
---|
619 | subroutine initiate (filename,lat,lon,alt,ctl,GCM_layers,nout,& |
---|
620 | latdimout,londimout,altdimout,timedimout,& |
---|
621 | layerdimout,interlayerdimout,timevarout) |
---|
622 | !============================================================================== |
---|
623 | ! Purpose: |
---|
624 | ! Create and initialize a data file (NetCDF format) |
---|
625 | !============================================================================== |
---|
626 | ! Remarks: |
---|
627 | ! The NetCDF file (created in this subroutine) remains open |
---|
628 | !============================================================================== |
---|
629 | |
---|
630 | implicit none |
---|
631 | |
---|
632 | include "netcdf.inc" ! NetCDF definitions |
---|
633 | |
---|
634 | !============================================================================== |
---|
635 | ! Arguments: |
---|
636 | !============================================================================== |
---|
637 | character (len=*), intent(in):: filename |
---|
638 | ! filename(): the file's name |
---|
639 | real, dimension(:), intent(in):: lat |
---|
640 | ! lat(): latitude |
---|
641 | real, dimension(:), intent(in):: lon |
---|
642 | ! lon(): longitude |
---|
643 | real, dimension(:), intent(in):: alt |
---|
644 | ! alt(): altitude |
---|
645 | real, dimension(:), intent(in):: ctl |
---|
646 | ! ctl(): controle |
---|
647 | integer,intent(in) :: GCM_layers ! number of GCM layers |
---|
648 | integer, intent(out):: nout |
---|
649 | ! nout: [netcdf] file ID |
---|
650 | integer, intent(out):: latdimout |
---|
651 | ! latdimout: [netcdf] lat() (i.e.: latitude) ID |
---|
652 | integer, intent(out):: londimout |
---|
653 | ! londimout: [netcdf] lon() ID |
---|
654 | integer, intent(out):: altdimout |
---|
655 | ! altdimout: [netcdf] alt() ID |
---|
656 | integer, intent(out):: timedimout |
---|
657 | ! timedimout: [netcdf] "Time" ID |
---|
658 | integer,intent(out) :: layerdimout |
---|
659 | ! layerdimout: [netcdf] "GCM_layers" ID |
---|
660 | integer,intent(out) :: interlayerdimout |
---|
661 | ! layerdimout: [netcdf] "GCM_layers+1" ID |
---|
662 | integer, intent(out):: timevarout |
---|
663 | ! timevarout: [netcdf] "Time" (considered as a variable) ID |
---|
664 | |
---|
665 | !============================================================================== |
---|
666 | ! Local variables: |
---|
667 | !============================================================================== |
---|
668 | !integer :: latdim,londim,altdim,timedim |
---|
669 | integer :: nvarid,ierr |
---|
670 | integer :: ctldimout |
---|
671 | ! nvarid: [netcdf] ID of a variable |
---|
672 | ! ierr: [netcdf] return error code (from called subroutines) |
---|
673 | |
---|
674 | !============================================================================== |
---|
675 | ! 1. Create (and open) output file |
---|
676 | !============================================================================== |
---|
677 | write(*,*) "creating "//trim(adjustl(filename))//'...' |
---|
678 | ierr = NF_CREATE(filename,IOR(NF_CLOBBER,NF_64BIT_OFFSET),nout) |
---|
679 | ! NB: setting NF_CLOBBER mode means that it's OK to overwrite an existing file |
---|
680 | if (ierr.NE.NF_NOERR) then |
---|
681 | WRITE(*,*)'ERROR: Impossible to create the file.' |
---|
682 | stop "" |
---|
683 | endif |
---|
684 | |
---|
685 | !============================================================================== |
---|
686 | ! 2. Define/write "dimensions" and get their IDs |
---|
687 | !============================================================================== |
---|
688 | |
---|
689 | ierr = NF_DEF_DIM(nout, "latitude", size(lat), latdimout) |
---|
690 | ierr = NF_DEF_DIM(nout, "longitude", size(lon), londimout) |
---|
691 | ierr = NF_DEF_DIM(nout, "altitude", size(alt), altdimout) |
---|
692 | if (size(ctl).ne.0) ierr = NF_DEF_DIM(nout, "index", size(ctl), ctldimout) |
---|
693 | ierr = NF_DEF_DIM(nout, "Time", NF_UNLIMITED, timedimout) |
---|
694 | ierr = NF_DEF_DIM(nout, "GCM_layers", GCM_layers, layerdimout) |
---|
695 | ierr = NF_DEF_DIM(nout, "GCM_interlayers",GCM_layers+1,interlayerdimout) |
---|
696 | |
---|
697 | ! End netcdf define mode |
---|
698 | ierr = NF_ENDDEF(nout) |
---|
699 | |
---|
700 | !============================================================================== |
---|
701 | ! 3. Write "Time" and its attributes |
---|
702 | !============================================================================== |
---|
703 | |
---|
704 | call def_var(nout,"Time","Time","years since 0000-00-0 00:00:00",1,& |
---|
705 | (/timedimout/),timevarout,ierr) |
---|
706 | |
---|
707 | !============================================================================== |
---|
708 | ! 4. Write "latitude" (data and attributes) |
---|
709 | !============================================================================== |
---|
710 | |
---|
711 | call def_var(nout,"latitude","latitude","degrees_north",1,& |
---|
712 | (/latdimout/),nvarid,ierr) |
---|
713 | |
---|
714 | #ifdef NC_DOUBLE |
---|
715 | ierr = NF_PUT_VAR_DOUBLE (nout,nvarid,lat) |
---|
716 | #else |
---|
717 | ierr = NF_PUT_VAR_REAL (nout,nvarid,lat) |
---|
718 | #endif |
---|
719 | |
---|
720 | !============================================================================== |
---|
721 | ! 4. Write "longitude" (data and attributes) |
---|
722 | !============================================================================== |
---|
723 | |
---|
724 | call def_var(nout,"longitude","East longitude","degrees_east",1,& |
---|
725 | (/londimout/),nvarid,ierr) |
---|
726 | |
---|
727 | #ifdef NC_DOUBLE |
---|
728 | ierr = NF_PUT_VAR_DOUBLE (nout,nvarid,lon) |
---|
729 | #else |
---|
730 | ierr = NF_PUT_VAR_REAL (nout,nvarid,lon) |
---|
731 | #endif |
---|
732 | |
---|
733 | !============================================================================== |
---|
734 | ! 5. Write "altitude" (data and attributes) |
---|
735 | !============================================================================== |
---|
736 | |
---|
737 | ! Switch to netcdf define mode |
---|
738 | ierr = NF_REDEF (nout) |
---|
739 | |
---|
740 | #ifdef NC_DOUBLE |
---|
741 | ierr = NF_DEF_VAR (nout,"altitude",NF_DOUBLE,1,altdimout,nvarid) |
---|
742 | #else |
---|
743 | ierr = NF_DEF_VAR (nout,"altitude",NF_FLOAT,1,altdimout,nvarid) |
---|
744 | #endif |
---|
745 | |
---|
746 | ierr = NF_PUT_ATT_TEXT (nout,nvarid,"long_name",8,"altitude") |
---|
747 | ierr = NF_PUT_ATT_TEXT (nout,nvarid,'units',2,"km") |
---|
748 | ierr = NF_PUT_ATT_TEXT (nout,nvarid,'positive',2,"up") |
---|
749 | |
---|
750 | ! End netcdf define mode |
---|
751 | ierr = NF_ENDDEF(nout) |
---|
752 | |
---|
753 | #ifdef NC_DOUBLE |
---|
754 | ierr = NF_PUT_VAR_DOUBLE (nout,nvarid,alt) |
---|
755 | #else |
---|
756 | ierr = NF_PUT_VAR_REAL (nout,nvarid,alt) |
---|
757 | #endif |
---|
758 | |
---|
759 | !============================================================================== |
---|
760 | ! 6. Write "controle" (data and attributes) |
---|
761 | !============================================================================== |
---|
762 | |
---|
763 | if (size(ctl).ne.0) then |
---|
764 | ! Switch to netcdf define mode |
---|
765 | ierr = NF_REDEF (nout) |
---|
766 | |
---|
767 | #ifdef NC_DOUBLE |
---|
768 | ierr = NF_DEF_VAR (nout,"controle",NF_DOUBLE,1,ctldimout,nvarid) |
---|
769 | #else |
---|
770 | ierr = NF_DEF_VAR (nout,"controle",NF_FLOAT,1,ctldimout,nvarid) |
---|
771 | #endif |
---|
772 | |
---|
773 | ierr = NF_PUT_ATT_TEXT (nout,nvarid,"title",18,"Control parameters") |
---|
774 | |
---|
775 | ! End netcdf define mode |
---|
776 | ierr = NF_ENDDEF(nout) |
---|
777 | |
---|
778 | #ifdef NC_DOUBLE |
---|
779 | ierr = NF_PUT_VAR_DOUBLE (nout,nvarid,ctl) |
---|
780 | #else |
---|
781 | ierr = NF_PUT_VAR_REAL (nout,nvarid,ctl) |
---|
782 | #endif |
---|
783 | endif |
---|
784 | |
---|
785 | end Subroutine initiate |
---|
786 | !****************************************************************************** |
---|
787 | subroutine init2(infid,lonlen,latlen,altlen,GCM_layers, & |
---|
788 | outfid,londimout,latdimout,altdimout, & |
---|
789 | layerdimout,interlayerdimout) |
---|
790 | !============================================================================== |
---|
791 | ! Purpose: |
---|
792 | ! Copy ap() , bp(), aps(), bps(), aire() and phisinit() |
---|
793 | ! from input file to outpout file |
---|
794 | !============================================================================== |
---|
795 | ! Remarks: |
---|
796 | ! The NetCDF files must be open |
---|
797 | !============================================================================== |
---|
798 | |
---|
799 | implicit none |
---|
800 | |
---|
801 | include "netcdf.inc" ! NetCDF definitions |
---|
802 | |
---|
803 | !============================================================================== |
---|
804 | ! Arguments: |
---|
805 | !============================================================================== |
---|
806 | integer, intent(in) :: infid ! NetCDF output file ID |
---|
807 | integer, intent(in) :: lonlen ! # of grid points along longitude |
---|
808 | integer, intent(in) :: latlen ! # of grid points along latitude |
---|
809 | integer, intent(in) :: altlen ! # of grid points along latitude |
---|
810 | integer, intent(in) :: GCM_layers ! # of GCM atmospheric layers |
---|
811 | integer, intent(in) :: outfid ! NetCDF output file ID |
---|
812 | integer, intent(in) :: londimout ! longitude dimension ID |
---|
813 | integer, intent(in) :: latdimout ! latitude dimension ID |
---|
814 | integer, intent(in) :: altdimout ! altitude dimension ID |
---|
815 | integer, intent(in) :: layerdimout ! GCM_layers dimension ID |
---|
816 | integer, intent(in) :: interlayerdimout ! GCM_layers+1 dimension ID |
---|
817 | !============================================================================== |
---|
818 | ! Local variables: |
---|
819 | !============================================================================== |
---|
820 | real,dimension(:),allocatable :: aps,bps ! hybrid vertical coordinates |
---|
821 | real,dimension(:),allocatable :: ap,bp ! hybrid vertical coordinates |
---|
822 | real,dimension(:),allocatable :: sigma ! sigma levels |
---|
823 | real,dimension(:,:),allocatable :: aire ! mesh areas |
---|
824 | real,dimension(:,:),allocatable :: phisinit ! Ground geopotential |
---|
825 | integer :: apsid,bpsid,sigmaid,phisinitid |
---|
826 | integer :: apid,bpid |
---|
827 | integer :: ierr |
---|
828 | integer :: tmpvarid ! temporary variable ID |
---|
829 | logical :: area ! is "aire" available ? |
---|
830 | logical :: phis ! is "phisinit" available ? |
---|
831 | logical :: hybrid ! are "aps" and "bps" available ? |
---|
832 | logical :: apbp ! are "ap" and "bp" available ? |
---|
833 | |
---|
834 | !============================================================================== |
---|
835 | ! 1. Read data from input file |
---|
836 | !============================================================================== |
---|
837 | |
---|
838 | ! hybrid coordinate aps |
---|
839 | !write(*,*) "aps: altlen=",altlen," GCM_layers=",GCM_layers |
---|
840 | allocate(aps(GCM_layers),stat=ierr) |
---|
841 | if (ierr.ne.0) then |
---|
842 | write(*,*) "init2: failed to allocate aps!" |
---|
843 | stop |
---|
844 | endif |
---|
845 | ierr=NF_INQ_VARID(infid,"aps",tmpvarid) |
---|
846 | if (ierr.ne.NF_NOERR) then |
---|
847 | write(*,*) "Ooops. Failed to get aps ID. OK, will look for sigma coord." |
---|
848 | hybrid=.false. |
---|
849 | else |
---|
850 | ierr=NF_GET_VAR_REAL(infid,tmpvarid,aps) |
---|
851 | hybrid=.true. |
---|
852 | if (ierr.ne.NF_NOERR) then |
---|
853 | stop "init2 Error: Failed reading aps" |
---|
854 | endif |
---|
855 | |
---|
856 | ! hybrid coordinate bps |
---|
857 | ! write(*,*) "bps: altlen=",altlen," GCM_layers=",GCM_layers |
---|
858 | allocate(bps(GCM_layers),stat=ierr) |
---|
859 | if (ierr.ne.0) then |
---|
860 | write(*,*) "init2: failed to allocate bps!" |
---|
861 | stop |
---|
862 | endif |
---|
863 | ierr=NF_INQ_VARID(infid,"bps",tmpvarid) |
---|
864 | if (ierr.ne.NF_NOERR) then |
---|
865 | stop "init2 Error: Failed to get bps ID." |
---|
866 | endif |
---|
867 | ierr=NF_GET_VAR_REAL(infid,tmpvarid,bps) |
---|
868 | if (ierr.ne.NF_NOERR) then |
---|
869 | stop "init2 Error: Failed reading bps" |
---|
870 | endif |
---|
871 | endif |
---|
872 | |
---|
873 | ! hybrid coordinate ap |
---|
874 | allocate(ap(GCM_layers+1),stat=ierr) |
---|
875 | if (ierr.ne.0) then |
---|
876 | write(*,*) "init2: failed to allocate ap!" |
---|
877 | stop |
---|
878 | else |
---|
879 | ierr=NF_INQ_VARID(infid,"ap",tmpvarid) |
---|
880 | if (ierr.ne.NF_NOERR) then |
---|
881 | write(*,*) "Ooops. Failed to get ap ID. OK." |
---|
882 | apbp=.false. |
---|
883 | else |
---|
884 | ierr=NF_GET_VAR_REAL(infid,tmpvarid,ap) |
---|
885 | apbp=.true. |
---|
886 | if (ierr.ne.NF_NOERR) then |
---|
887 | stop "Error: Failed reading ap" |
---|
888 | endif |
---|
889 | endif |
---|
890 | endif |
---|
891 | |
---|
892 | ! hybrid coordinate bp |
---|
893 | allocate(bp(GCM_layers+1),stat=ierr) |
---|
894 | if (ierr.ne.0) then |
---|
895 | write(*,*) "init2: failed to allocate bp!" |
---|
896 | stop |
---|
897 | else |
---|
898 | ierr=NF_INQ_VARID(infid,"bp",tmpvarid) |
---|
899 | if (ierr.ne.NF_NOERR) then |
---|
900 | write(*,*) "Ooops. Failed to get bp ID. OK." |
---|
901 | apbp=.false. |
---|
902 | else |
---|
903 | ierr=NF_GET_VAR_REAL(infid,tmpvarid,bp) |
---|
904 | apbp=.true. |
---|
905 | if (ierr.ne.NF_NOERR) then |
---|
906 | stop "Error: Failed reading bp" |
---|
907 | endif |
---|
908 | endif |
---|
909 | endif |
---|
910 | |
---|
911 | ! sigma levels (if any) |
---|
912 | if (.not.hybrid) then |
---|
913 | allocate(sigma(GCM_layers),stat=ierr) |
---|
914 | if (ierr.ne.0) then |
---|
915 | write(*,*) "init2: failed to allocate sigma" |
---|
916 | stop |
---|
917 | endif |
---|
918 | ierr=NF_INQ_VARID(infid,"sigma",tmpvarid) |
---|
919 | ierr=NF_GET_VAR_REAL(infid,tmpvarid,sigma) |
---|
920 | if (ierr.ne.NF_NOERR) then |
---|
921 | stop "init2 Error: Failed reading sigma" |
---|
922 | endif |
---|
923 | endif ! of if (.not.hybrid) |
---|
924 | |
---|
925 | ! mesh area |
---|
926 | allocate(aire(lonlen,latlen),stat=ierr) |
---|
927 | if (ierr.ne.0) then |
---|
928 | write(*,*) "init2: failed to allocate aire!" |
---|
929 | stop |
---|
930 | endif |
---|
931 | ierr=NF_INQ_VARID(infid,"aire",tmpvarid) |
---|
932 | if (ierr.ne.NF_NOERR) then |
---|
933 | write(*,*)"init2 warning: Failed to get aire ID." |
---|
934 | area = .false. |
---|
935 | else |
---|
936 | ierr=NF_GET_VAR_REAL(infid,tmpvarid,aire) |
---|
937 | if (ierr.ne.NF_NOERR) then |
---|
938 | stop "init2 Error: Failed reading aire" |
---|
939 | endif |
---|
940 | area = .true. |
---|
941 | endif |
---|
942 | |
---|
943 | ! ground geopotential phisinit |
---|
944 | allocate(phisinit(lonlen,latlen),stat=ierr) |
---|
945 | if (ierr.ne.0) then |
---|
946 | write(*,*) "init2: failed to allocate phisinit!" |
---|
947 | stop |
---|
948 | endif |
---|
949 | ierr=NF_INQ_VARID(infid,"phisinit",tmpvarid) |
---|
950 | if (ierr.ne.NF_NOERR) then |
---|
951 | write(*,*)"init2 warning: Failed to get phisinit ID." |
---|
952 | phis = .false. |
---|
953 | else |
---|
954 | ierr=NF_GET_VAR_REAL(infid,tmpvarid,phisinit) |
---|
955 | if (ierr.ne.NF_NOERR) then |
---|
956 | stop "init2 Error: Failed reading phisinit" |
---|
957 | endif |
---|
958 | phis = .true. |
---|
959 | endif |
---|
960 | |
---|
961 | !============================================================================== |
---|
962 | ! 2. Write |
---|
963 | !============================================================================== |
---|
964 | |
---|
965 | !============================================================================== |
---|
966 | ! 2.2. Hybrid coordinates ap() , bp(), aps() and bps() |
---|
967 | !============================================================================== |
---|
968 | if(hybrid) then |
---|
969 | ! define aps |
---|
970 | call def_var(nout,"aps","hybrid pressure at midlayers"," ",1,& |
---|
971 | (/layerdimout/),apsid,ierr) |
---|
972 | if (ierr.ne.NF_NOERR) then |
---|
973 | stop "init2 Error: Failed to def_var aps" |
---|
974 | endif |
---|
975 | |
---|
976 | ! write aps |
---|
977 | #ifdef NC_DOUBLE |
---|
978 | ierr=NF_PUT_VAR_DOUBLE(outfid,apsid,aps) |
---|
979 | #else |
---|
980 | ierr=NF_PUT_VAR_REAL(outfid,apsid,aps) |
---|
981 | #endif |
---|
982 | if (ierr.ne.NF_NOERR) then |
---|
983 | stop "init2 Error: Failed to write aps" |
---|
984 | endif |
---|
985 | |
---|
986 | ! define bps |
---|
987 | call def_var(nout,"bps","hybrid sigma at midlayers"," ",1,& |
---|
988 | (/layerdimout/),bpsid,ierr) |
---|
989 | if (ierr.ne.NF_NOERR) then |
---|
990 | stop "init2 Error: Failed to def_var bps" |
---|
991 | endif |
---|
992 | |
---|
993 | ! write bps |
---|
994 | #ifdef NC_DOUBLE |
---|
995 | ierr=NF_PUT_VAR_DOUBLE(outfid,bpsid,bps) |
---|
996 | #else |
---|
997 | ierr=NF_PUT_VAR_REAL(outfid,bpsid,bps) |
---|
998 | #endif |
---|
999 | if (ierr.ne.NF_NOERR) then |
---|
1000 | stop "init2 Error: Failed to write bps" |
---|
1001 | endif |
---|
1002 | |
---|
1003 | if (apbp) then |
---|
1004 | ! define ap |
---|
1005 | call def_var(nout,"ap","hybrid sigma at interlayers"," ",1,& |
---|
1006 | (/interlayerdimout/),apid,ierr) |
---|
1007 | if (ierr.ne.NF_NOERR) then |
---|
1008 | stop "Error: Failed to def_var ap" |
---|
1009 | endif |
---|
1010 | |
---|
1011 | ! write ap |
---|
1012 | #ifdef NC_DOUBLE |
---|
1013 | ierr=NF_PUT_VAR_DOUBLE(outfid,apid,ap) |
---|
1014 | #else |
---|
1015 | ierr=NF_PUT_VAR_REAL(outfid,apid,ap) |
---|
1016 | #endif |
---|
1017 | if (ierr.ne.NF_NOERR) then |
---|
1018 | stop "Error: Failed to write ap" |
---|
1019 | endif |
---|
1020 | |
---|
1021 | ! define bp |
---|
1022 | call def_var(nout,"bp","hybrid sigma at interlayers"," ",1,& |
---|
1023 | (/interlayerdimout/),bpid,ierr) |
---|
1024 | if (ierr.ne.NF_NOERR) then |
---|
1025 | stop "Error: Failed to def_var bp" |
---|
1026 | endif |
---|
1027 | |
---|
1028 | ! write bp |
---|
1029 | #ifdef NC_DOUBLE |
---|
1030 | ierr=NF_PUT_VAR_DOUBLE(outfid,bpid,bp) |
---|
1031 | #else |
---|
1032 | ierr=NF_PUT_VAR_REAL(outfid,bpid,bp) |
---|
1033 | #endif |
---|
1034 | if (ierr.ne.NF_NOERR) then |
---|
1035 | stop "Error: Failed to write bp" |
---|
1036 | endif |
---|
1037 | endif ! of if (apbp) |
---|
1038 | |
---|
1039 | else |
---|
1040 | ! define sigma |
---|
1041 | call def_var(nout,"sigma","sigma at midlayers"," ",1,& |
---|
1042 | (/layerdimout/),sigmaid,ierr) |
---|
1043 | if (ierr.ne.NF_NOERR) then |
---|
1044 | stop "init2 Error: Failed to def_var sigma" |
---|
1045 | endif |
---|
1046 | ! write sigma |
---|
1047 | #ifdef NC_DOUBLE |
---|
1048 | ierr=NF_PUT_VAR_DOUBLE(outfid,sigmaid,sigma) |
---|
1049 | #else |
---|
1050 | ierr=NF_PUT_VAR_REAL(outfid,sigmaid,sigma) |
---|
1051 | #endif |
---|
1052 | if (ierr.ne.NF_NOERR) then |
---|
1053 | stop "init2 Error: Failed to write sigma" |
---|
1054 | endif |
---|
1055 | endif ! of if (hybrid) |
---|
1056 | |
---|
1057 | !============================================================================== |
---|
1058 | ! 2.2. aire() and phisinit() |
---|
1059 | !============================================================================== |
---|
1060 | |
---|
1061 | if (area) then |
---|
1062 | ! define aire |
---|
1063 | call def_var(nout,"aire","Mesh area","m2",2,& |
---|
1064 | (/londimout,latdimout/),tmpvarid,ierr) |
---|
1065 | if (ierr.ne.NF_NOERR) then |
---|
1066 | stop "init2 Error: Failed to def_var aire" |
---|
1067 | endif |
---|
1068 | |
---|
1069 | ! write aire |
---|
1070 | #ifdef NC_DOUBLE |
---|
1071 | ierr=NF_PUT_VAR_DOUBLE(outfid,tmpvarid,aire) |
---|
1072 | #else |
---|
1073 | ierr=NF_PUT_VAR_REAL(outfid,tmpvarid,aire) |
---|
1074 | #endif |
---|
1075 | if (ierr.ne.NF_NOERR) then |
---|
1076 | stop "init2 Error: Failed to write aire" |
---|
1077 | endif |
---|
1078 | endif ! of if (area) |
---|
1079 | |
---|
1080 | IF (phis) THEN |
---|
1081 | |
---|
1082 | !define phisinit |
---|
1083 | call def_var(nout,"phisinit","Ground level geopotential"," ",2,& |
---|
1084 | (/londimout,latdimout/),phisinitid,ierr) |
---|
1085 | if (ierr.ne.NF_NOERR) then |
---|
1086 | stop "init2 Error: Failed to def_var phisinit" |
---|
1087 | endif |
---|
1088 | |
---|
1089 | ! write phisinit |
---|
1090 | #ifdef NC_DOUBLE |
---|
1091 | ierr=NF_PUT_VAR_DOUBLE(outfid,phisinitid,phisinit) |
---|
1092 | #else |
---|
1093 | ierr=NF_PUT_VAR_REAL(outfid,phisinitid,phisinit) |
---|
1094 | #endif |
---|
1095 | if (ierr.ne.NF_NOERR) then |
---|
1096 | stop "init2 Error: Failed to write phisinit" |
---|
1097 | endif |
---|
1098 | |
---|
1099 | ENDIF ! of IF (phis) |
---|
1100 | |
---|
1101 | |
---|
1102 | ! Cleanup |
---|
1103 | if (allocated(aps)) deallocate(aps) |
---|
1104 | if (allocated(bps)) deallocate(bps) |
---|
1105 | if (allocated(ap)) deallocate(ap) |
---|
1106 | if (allocated(bp)) deallocate(bp) |
---|
1107 | if (allocated(sigma)) deallocate(sigma) |
---|
1108 | if (allocated(phisinit)) deallocate(phisinit) |
---|
1109 | if (allocated(aire)) deallocate(aire) |
---|
1110 | |
---|
1111 | end subroutine init2 |
---|
1112 | !****************************************************************************** |
---|
1113 | subroutine def_var(nid,name,title,units,nbdim,dim,nvarid,ierr) |
---|
1114 | !============================================================================== |
---|
1115 | ! Purpose: Write a variable (i.e: add a variable to a dataset) |
---|
1116 | ! called "name"; along with its attributes "title", "units"... |
---|
1117 | ! to a file (following the NetCDF format) |
---|
1118 | !============================================================================== |
---|
1119 | ! Remarks: |
---|
1120 | ! The NetCDF file must be open |
---|
1121 | !============================================================================== |
---|
1122 | |
---|
1123 | implicit none |
---|
1124 | |
---|
1125 | include "netcdf.inc" ! NetCDF definitions |
---|
1126 | |
---|
1127 | !============================================================================== |
---|
1128 | ! Arguments: |
---|
1129 | !============================================================================== |
---|
1130 | integer, intent(in) :: nid |
---|
1131 | ! nid: [netcdf] file ID # |
---|
1132 | character (len=*), intent(in) :: name |
---|
1133 | ! name(): [netcdf] variable's name |
---|
1134 | character (len=*), intent(in) :: title |
---|
1135 | ! title(): [netcdf] variable's "title" attribute |
---|
1136 | character (len=*), intent(in) :: units |
---|
1137 | ! unit(): [netcdf] variable's "units" attribute |
---|
1138 | integer, intent(in) :: nbdim |
---|
1139 | ! nbdim: number of dimensions of the variable |
---|
1140 | integer, dimension(nbdim), intent(in) :: dim |
---|
1141 | ! dim(nbdim): [netcdf] dimension(s) ID(s) |
---|
1142 | integer, intent(out) :: nvarid |
---|
1143 | ! nvarid: [netcdf] ID # of the variable |
---|
1144 | integer, intent(out) :: ierr |
---|
1145 | ! ierr: [netcdf] subroutines returned error code |
---|
1146 | |
---|
1147 | ! Switch to netcdf define mode |
---|
1148 | ierr=NF_REDEF(nid) |
---|
1149 | |
---|
1150 | ! Insert the definition of the variable |
---|
1151 | #ifdef NC_DOUBLE |
---|
1152 | ierr=NF_DEF_VAR(nid,adjustl(name),NF_DOUBLE,nbdim,dim,nvarid) |
---|
1153 | #else |
---|
1154 | ierr=NF_DEF_VAR(nid,adjustl(name),NF_FLOAT,nbdim,dim,nvarid) |
---|
1155 | #endif |
---|
1156 | |
---|
1157 | ! Write the attributes |
---|
1158 | ierr=NF_PUT_ATT_TEXT(nid,nvarid,"title",len_trim(adjustl(title)),adjustl(title)) |
---|
1159 | ierr=NF_PUT_ATT_TEXT(nid,nvarid,"units",len_trim(adjustl(units)),adjustl(units)) |
---|
1160 | |
---|
1161 | ! End netcdf define mode |
---|
1162 | ierr=NF_ENDDEF(nid) |
---|
1163 | |
---|
1164 | end subroutine def_var |
---|
1165 | !****************************************************************************** |
---|
1166 | subroutine change_time_axis(nid,ierr) |
---|
1167 | !============================================================================== |
---|
1168 | ! Purpose: |
---|
1169 | ! Read "time" variable from a dataset, convert it from "sol" (martian |
---|
1170 | ! days) to "Ls" (solar longitude) and write the result back in the file |
---|
1171 | !============================================================================== |
---|
1172 | ! Remarks: |
---|
1173 | ! The NetCDF file must be opened before this subroutine is called |
---|
1174 | !============================================================================== |
---|
1175 | |
---|
1176 | implicit none |
---|
1177 | |
---|
1178 | include "netcdf.inc" ! NetCDF definitions |
---|
1179 | |
---|
1180 | !============================================================================== |
---|
1181 | ! Arguments: |
---|
1182 | !============================================================================== |
---|
1183 | integer, intent(in) :: nid |
---|
1184 | ! nid: [netcdf] file ID |
---|
1185 | integer, intent(out) :: ierr |
---|
1186 | ! ierr: [netcdf] return error code |
---|
1187 | |
---|
1188 | !============================================================================== |
---|
1189 | ! Local variables: |
---|
1190 | !============================================================================== |
---|
1191 | integer :: nvarid |
---|
1192 | ! nvarid: ID of the "Time" variable |
---|
1193 | integer :: timelen |
---|
1194 | ! timelen: size of the arrays |
---|
1195 | integer :: timedim |
---|
1196 | ! timedim: ID of the "Time" dimension |
---|
1197 | integer i |
---|
1198 | |
---|
1199 | real, dimension(:), allocatable :: time,ls |
---|
1200 | ! time(): time, given in sols |
---|
1201 | ! ls(): time, given in Ls (solar longitude) |
---|
1202 | |
---|
1203 | !============================================================================== |
---|
1204 | ! 1. Read |
---|
1205 | !============================================================================== |
---|
1206 | |
---|
1207 | ierr=NF_INQ_DIMID(nid,"Time",timedim) |
---|
1208 | ierr=NF_INQ_VARID(nid,"Time",nvarid) |
---|
1209 | if (ierr.NE.NF_NOERR) then |
---|
1210 | write(*,*) 'ERROR in change_time_axis: Field <Time> not found' |
---|
1211 | print*, NF_STRERROR(ierr) |
---|
1212 | stop "" |
---|
1213 | endif |
---|
1214 | |
---|
1215 | ierr=NF_INQ_DIMLEN(nid,timedim,timelen) |
---|
1216 | allocate(time(timelen),ls(timelen)) |
---|
1217 | #ifdef NC_DOUBLE |
---|
1218 | ierr = NF_GET_VAR_DOUBLE(nid,nvarid,time) |
---|
1219 | #else |
---|
1220 | ierr = NF_GET_VAR_REAL(nid,nvarid,time) |
---|
1221 | #endif |
---|
1222 | if (ierr.ne.NF_NOERR) then |
---|
1223 | write(*,*) "ERROR in change_time_axis: Failed to load Time" |
---|
1224 | stop |
---|
1225 | endif |
---|
1226 | |
---|
1227 | !============================================================================== |
---|
1228 | ! 2. Convert sols to Ls |
---|
1229 | !============================================================================== |
---|
1230 | |
---|
1231 | do i=1,timelen |
---|
1232 | call sol2ls(time(i),ls(i)) |
---|
1233 | enddo |
---|
1234 | |
---|
1235 | !============================================================================== |
---|
1236 | ! 2.1 Check if there are not jumps in Ls (rounding problems in sol2ls) |
---|
1237 | !============================================================================== |
---|
1238 | |
---|
1239 | do i=1,timelen-1 |
---|
1240 | if ((ls(i+1)-ls(i)) > 350) then |
---|
1241 | write(*,*) "+ 360 deg Ls jump solved:", ls(i), ls(i+1), "at timestep", i |
---|
1242 | ls(i+1) = ls(i+1) - 360 |
---|
1243 | write(*,*) " corrected to now be:", ls(i), ls(i+1) |
---|
1244 | else if ((ls(i)-ls(i+1)) > 350) then |
---|
1245 | write(*,*) "- 360 deg Ls jump solved:", ls(i), ls(i+1), "at timestep", i |
---|
1246 | ls(i+1) = ls(i+1) + 360 |
---|
1247 | write(*,*) " corrected to now be:", ls(i), ls(i+1) |
---|
1248 | endif |
---|
1249 | enddo |
---|
1250 | |
---|
1251 | !============================================================================== |
---|
1252 | ! 3. Write |
---|
1253 | !============================================================================== |
---|
1254 | |
---|
1255 | #ifdef NC_DOUBLE |
---|
1256 | ierr = NF_PUT_VAR_DOUBLE(nid,nvarid,ls) |
---|
1257 | #else |
---|
1258 | ierr = NF_PUT_VAR_REAL(nid,nvarid,ls) |
---|
1259 | #endif |
---|
1260 | if (ierr.ne.NF_NOERR) then |
---|
1261 | write(*,*) "ERROR in change_time_axis: Failed to write Ls" |
---|
1262 | stop |
---|
1263 | endif |
---|
1264 | |
---|
1265 | end subroutine change_time_axis |
---|
1266 | !****************************************************************************** |
---|
1267 | subroutine sol2ls(sol,Ls) |
---|
1268 | !============================================================================== |
---|
1269 | ! Purpose: |
---|
1270 | ! Convert a date/time, given in sol (martian day), |
---|
1271 | ! into solar longitude date/time, in Ls (in degrees), |
---|
1272 | ! where sol=0 is (by definition) the northern hemisphere |
---|
1273 | ! spring equinox (where Ls=0). |
---|
1274 | !============================================================================== |
---|
1275 | ! Notes: |
---|
1276 | ! Even though "Ls" is cyclic, if "sol" is greater than N (martian) year, |
---|
1277 | ! "Ls" will be increased by N*360 |
---|
1278 | ! Won't work as expected if sol is negative (then again, |
---|
1279 | ! why would that ever happen?) |
---|
1280 | !============================================================================== |
---|
1281 | |
---|
1282 | implicit none |
---|
1283 | |
---|
1284 | !============================================================================== |
---|
1285 | ! Arguments: |
---|
1286 | !============================================================================== |
---|
1287 | real,intent(in) :: sol |
---|
1288 | real,intent(out) :: Ls |
---|
1289 | |
---|
1290 | !============================================================================== |
---|
1291 | ! Local variables: |
---|
1292 | !============================================================================== |
---|
1293 | real year_day,peri_day,timeperi,e_elips,twopi,degrad |
---|
1294 | data year_day /669./ ! # of sols in a martian year |
---|
1295 | data peri_day /485.0/ |
---|
1296 | data timeperi /1.9082314/ |
---|
1297 | data e_elips /0.093358/ |
---|
1298 | data twopi /6.2831853/ ! 2.*pi |
---|
1299 | data degrad /57.2957795/ ! pi/180 |
---|
1300 | |
---|
1301 | real zanom,xref,zx0,zdx,zteta,zz |
---|
1302 | |
---|
1303 | integer count_years |
---|
1304 | integer iter |
---|
1305 | |
---|
1306 | !============================================================================== |
---|
1307 | ! 1. Compute Ls |
---|
1308 | !============================================================================== |
---|
1309 | |
---|
1310 | zz=(sol-peri_day)/year_day |
---|
1311 | zanom=twopi*(zz-nint(zz)) |
---|
1312 | xref=abs(zanom) |
---|
1313 | |
---|
1314 | ! The equation zx0 - e * sin (zx0) = xref, solved by Newton |
---|
1315 | zx0=xref+e_elips*sin(xref) |
---|
1316 | do iter=1,20 ! typically, 2 or 3 iterations are enough |
---|
1317 | zdx=-(zx0-e_elips*sin(zx0)-xref)/(1.-e_elips*cos(zx0)) |
---|
1318 | zx0=zx0+zdx |
---|
1319 | if(abs(zdx).le.(1.e-7)) then |
---|
1320 | ! write(*,*)'iter:',iter,' |zdx|:',abs(zdx) |
---|
1321 | exit |
---|
1322 | endif |
---|
1323 | enddo |
---|
1324 | |
---|
1325 | if(zanom.lt.0.) zx0=-zx0 |
---|
1326 | |
---|
1327 | zteta=2.*atan(sqrt((1.+e_elips)/(1.-e_elips))*tan(zx0/2.)) |
---|
1328 | Ls=zteta-timeperi |
---|
1329 | |
---|
1330 | if(Ls.lt.0.) then |
---|
1331 | Ls=Ls+twopi |
---|
1332 | else |
---|
1333 | if(Ls.gt.twopi) then |
---|
1334 | Ls=Ls-twopi |
---|
1335 | endif |
---|
1336 | endif |
---|
1337 | |
---|
1338 | Ls=degrad*Ls |
---|
1339 | ! Ls is now in degrees |
---|
1340 | |
---|
1341 | !============================================================================== |
---|
1342 | ! 1. Account for (eventual) years included in input date/time sol |
---|
1343 | !============================================================================== |
---|
1344 | |
---|
1345 | count_years=0 ! initialize |
---|
1346 | zz=sol ! use "zz" to store (and work on) the value of sol |
---|
1347 | do while (zz.ge.year_day) |
---|
1348 | count_years=count_years+1 |
---|
1349 | zz=zz-year_day |
---|
1350 | enddo |
---|
1351 | |
---|
1352 | ! Add 360 degrees to Ls for every year |
---|
1353 | if (count_years.ne.0) then |
---|
1354 | Ls=Ls+360.*count_years |
---|
1355 | endif |
---|
1356 | |
---|
1357 | |
---|
1358 | end subroutine sol2ls |
---|
1359 | !****************************************************************************** |
---|
1360 | subroutine missing_value(nout,nvarid,valid_range,missing) |
---|
1361 | !============================================================================== |
---|
1362 | ! Purpose: |
---|
1363 | ! Write "valid_range" and "missing_value" attributes (of a given |
---|
1364 | ! variable) to a netcdf file |
---|
1365 | !============================================================================== |
---|
1366 | ! Remarks: |
---|
1367 | ! NetCDF file must be open |
---|
1368 | ! Variable (nvarid) ID must be set |
---|
1369 | !============================================================================== |
---|
1370 | |
---|
1371 | implicit none |
---|
1372 | |
---|
1373 | include "netcdf.inc" ! NetCDF definitions |
---|
1374 | |
---|
1375 | !============================================================================== |
---|
1376 | ! Arguments: |
---|
1377 | !============================================================================== |
---|
1378 | integer, intent(in) :: nout |
---|
1379 | ! nout: [netcdf] file ID # |
---|
1380 | integer, intent(in) :: nvarid |
---|
1381 | ! varid: [netcdf] variable ID # |
---|
1382 | real, dimension(2), intent(in) :: valid_range |
---|
1383 | ! valid_range(2): [netcdf] "valid_range" attribute (min and max) |
---|
1384 | real, intent(in) :: missing |
---|
1385 | ! missing: [netcdf] "missing_value" attribute |
---|
1386 | |
---|
1387 | !============================================================================== |
---|
1388 | ! Local variables: |
---|
1389 | !============================================================================== |
---|
1390 | integer :: ierr |
---|
1391 | ! ierr: [netcdf] subroutine returned error code |
---|
1392 | ! INTEGER nout,nvarid,ierr |
---|
1393 | ! REAL missing |
---|
1394 | ! REAL valid_range(2) |
---|
1395 | |
---|
1396 | ! Switch to netcdf dataset define mode |
---|
1397 | ierr = NF_REDEF (nout) |
---|
1398 | if (ierr.ne.NF_NOERR) then |
---|
1399 | print*,'missing_value: ' |
---|
1400 | print*, NF_STRERROR(ierr) |
---|
1401 | endif |
---|
1402 | |
---|
1403 | ! Write valid_range() attribute |
---|
1404 | #ifdef NC_DOUBLE |
---|
1405 | ierr=NF_PUT_ATT_DOUBLE(nout,nvarid,'valid_range',NF_DOUBLE,2,valid_range) |
---|
1406 | #else |
---|
1407 | ierr=NF_PUT_ATT_REAL(nout,nvarid,'valid_range',NF_FLOAT,2,valid_range) |
---|
1408 | #endif |
---|
1409 | |
---|
1410 | if (ierr.ne.NF_NOERR) then |
---|
1411 | print*,'missing_value: valid_range attribution failed' |
---|
1412 | print*, NF_STRERROR(ierr) |
---|
1413 | !write(*,*) 'NF_NOERR', NF_NOERR |
---|
1414 | !CALL abort |
---|
1415 | stop "" |
---|
1416 | endif |
---|
1417 | |
---|
1418 | ! Write "missing_value" attribute |
---|
1419 | #ifdef NC_DOUBLE |
---|
1420 | ierr= NF_PUT_ATT_DOUBLE(nout,nvarid,'missing_value',NF_DOUBLE,1,missing) |
---|
1421 | #else |
---|
1422 | ierr= NF_PUT_ATT_REAL(nout,nvarid,'missing_value',NF_FLOAT,1,missing) |
---|
1423 | #endif |
---|
1424 | |
---|
1425 | if (ierr.NE.NF_NOERR) then |
---|
1426 | print*, 'missing_value: missing value attribution failed' |
---|
1427 | print*, NF_STRERROR(ierr) |
---|
1428 | ! WRITE(*,*) 'NF_NOERR', NF_NOERR |
---|
1429 | ! CALL abort |
---|
1430 | stop "" |
---|
1431 | endif |
---|
1432 | |
---|
1433 | ! End netcdf dataset define mode |
---|
1434 | ierr = NF_ENDDEF(nout) |
---|
1435 | |
---|
1436 | end subroutine missing_value |
---|
1437 | !****************************************************************************** |
---|
1438 | |
---|
1439 | end program concatnc |
---|