source: trunk/LMDZ.GENERIC/libf/phystd/xios_output_mod.F90 @ 1722

Last change on this file since 1722 was 1682, checked in by emillour, 9 years ago

All GCMs: set things up to enable pluging physics with dynamico

  • dyn3d
  • gcm.F90 : move I/O initialization (dates) to be done before physics

initialization

  • dyn3dpar
  • gcm.F : move I/O initialization (dates) to be done before physics

initialization

  • dynphy_lonlat:
  • inigeomphy_mod.F90 : add ind_cell_glo computation and transfer

to init_geometry

  • phy_common:
  • geometry_mod.F90 : add ind_cell_glo module variable to store global

column index

  • print_control_mod.F90 : make initialization occur via init_print_control_mod

to avoid circular module dependencies

  • init_print_control_mod.F90 : added to initialize print_control_mod module

variables

  • mod_phys_lmdz_mpi_data.F90 : use print_control_mod (rather than iniprint.h)
  • mod_phys_lmdz_para.F90 : use print_control_mod (rather than iniprint.h)
  • mod_phys_lmdz_omp_data.F90 : add is_omp_master (alias of is_omp_root) module

variable and use print_control_mod (rather than
iniprint.h)

  • physics_distribution_mod.F90 : add call to init_dimphy in

init_physics_distribution

  • xios_writefield.F90 : generic routine to output field with XIOS (for debug)
  • misc:
  • handle_err_m.F90 : call abort_physic, rather than abort_gcm
  • wxios.F90 : updates to enable unstructured grids

set module variable g_ctx_name to "LMDZ"
wxios_init(): remove call to wxios_context_init
wxios_context_init(): call xios_context_initialize with COMM_LMDZ_PHY
add routine wxios_set_context() to get handle and set context to XIOS
wxios_domain_param(): change arguments and generate the domain in-place
add wxios_domain_param_unstructured(): generate domain for unstructured case

NB: access is via "domain group" (whereas it is via "domain" in

wxios_domain_param)

  • dynphy_lonlat/phy[std|mars|venus|titan]:
  • iniphysiq_mod.F90 : Remove call to init_dimphy (which is now done in

phy_common/physics_distribution_mod.F90)

EM

File size: 8.8 KB
Line 
1MODULE xios_output_mod
2
3 IMPLICIT NONE
4 
5 INTEGER,PRIVATE,SAVE :: time_it=0 ! store number of iterations with calls to XIOS since start
6! does not need to be threadprivate; managed by omp master
7
8 CHARACTER(LEN=*), PARAMETER :: context_id= "LMDZ" ! same as in context_lmdz_physics.xml
9 
10#ifdef CPP_XIOS
11
12 INTERFACE send_xios_field
13    MODULE PROCEDURE histwrite0d_xios,histwrite2d_xios,histwrite3d_xios
14 END INTERFACE
15 
16
17CONTAINS
18
19  SUBROUTINE initialize_xios_output(day,timeofday,dtphys,daysec,&
20                                    presnivs,pseudoalt)
21!  USE mod_phys_lmdz_para, only: gather, bcast, &
22!                                jj_nb, jj_begin, jj_end, ii_begin, ii_end, &
23!                                mpi_size, mpi_rank, klon_mpi, &
24!                                is_sequential, is_south_pole_dyn
25  USE mod_phys_lmdz_para, ONLY: jj_nb, jj_begin, jj_end, ii_begin, ii_end, &
26                                mpi_size, mpi_rank, klon_mpi, &
27                                is_sequential, is_south_pole_dyn
28  USE mod_grid_phy_lmdz, ONLY: nbp_lon, nbp_lat, klon_glo, grid_type, unstructured
29  USE print_control_mod, ONLY: lunout, prt_level
30  USE mod_grid_phy_lmdz, ONLY: nbp_lon, nbp_lat
31  USE regular_lonlat_mod, ONLY: lon_reg, lat_reg
32  USE nrtype, ONLY: pi
33#ifdef CPP_XIOS
34  USE xios
35#endif
36  USE wxios, ONLY: wxios_domain_param, wxios_domain_param_unstructured, wxios_closedef
37  IMPLICIT NONE
38 
39  REAL,INTENT(IN) :: day ! Number of elapsed sols since reference Ls=0.
40  REAL,INTENT(IN) :: timeofday ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
41  REAL,INTENT(IN) :: dtphys ! physics time step (s)
42  REAL,INTENT(IN) :: daysec ! lengthof a standard day (s)
43  REAL,INTENT(IN) :: presnivs(:) ! vertical grid approximate pressure (Pa)
44  REAL,INTENT(IN) :: pseudoalt(:) ! vertical grid approximate altitude (km)
45 
46 
47  INTEGER :: data_ibegin, data_iend
48  TYPE(xios_duration) :: timestep
49  TYPE(xios_date) :: time_origin
50  TYPE(xios_date) :: start_date
51 
52!$OMP BARRIER
53!$OMP MASTER
54
55    ! 1. Declare available vertical axes to be used in output files:
56    IF (prt_level>=10) WRITE(lunout,*) "initialize_xios_output: call xios_set_axis_attr for presnivs"
57    CALL xios_set_axis_attr("presnivs", n_glo=size(presnivs), value=presnivs,&
58                            unit="Pa",positive="down")
59    IF (prt_level>=10) WRITE(lunout,*) "initialize_xios_output: call xios_set_axis_attr for altitude"
60    CALL xios_set_axis_attr("altitude", n_glo=size(pseudoalt), value=pseudoalt,&
61                            unit="km",positive="up")
62   
63    ! 2. Declare horizontal domain
64    ! Set values for the mask:
65!    IF (mpi_rank == 0) THEN
66!        data_ibegin = 0
67!    ELSE
68!        data_ibegin = ii_begin - 1
69!    END IF
70
71!    IF (mpi_rank == mpi_size-1) THEN
72!        data_iend = nbp_lon
73!    ELSE
74!        data_iend = ii_end + 1
75!    END IF
76
77!    if (prt_level>=10) then
78!      write(lunout,*) "initialize_xios_output: mpirank=",mpi_rank," iibegin=",ii_begin , " ii_end=",ii_end," jjbegin=",jj_begin," jj_nb=",jj_nb," jj_end=",jj_end
79!      write(lunout,*) "initialize_xios_output: mpirank=",mpi_rank," nbp_lon=",nbp_lon," nbp_lat=",nbp_lat
80!      write(lunout,*) "initialize_xios_output: mpirank=",mpi_rank," data_ibegin=",data_ibegin," data_iend=",data_iend
81!      write(lunout,*) "initialize_xios_output: mpirank=",mpi_rank," data_ibegin=",data_ibegin," data_iend=",data_iend
82!      write(lunout,*) "initialize_xios_output: mpirank=",mpi_rank," is_south_pole=",is_south_pole_dyn
83!    endif
84
85!$OMP END MASTER
86!$OMP BARRIER
87    ! Initialize the XIOS domain coreesponding to this process:
88    if (prt_level>=10) write(lunout,*) "initialize_xios_output: call wxios_domain_param"
89!    CALL wxios_domain_param("dom_glo", is_sequential, nbp_lon, jj_nb, nbp_lon, nbp_lat, &
90!                            1, nbp_lon, ii_begin, ii_end, jj_begin, jj_end,             &
91!                            klon_mpi+2*(nbp_lon-1), data_ibegin, data_iend,             &
92!                            lat_reg*(180./pi), lon_reg*(180./pi),                       &
93!                            is_south_pole_dyn,mpi_rank)
94
95    IF (grid_type==unstructured) THEN
96      CALL wxios_domain_param_unstructured("dom_glo")
97    ELSE
98      CALL wxios_domain_param("dom_glo")
99    ENDIF
100
101!$OMP MASTER
102    ! 3. Declare calendar and time step
103    if (prt_level>=10) write(lunout,*) "initialize_xios_output: build calendar"
104    timestep%second=dtphys
105    ! time origin of the simulation (default: 1st year/1st month/1st day, Ls=0)
106    time_origin=xios_date(1,1,1,0,0,0)
107    ! start date of the simulation (i.e time elapsed since last Ls=0)
108    start_date=xios_date(1,1,1,0,0,nint((day+timeofday)*daysec))
109    CALL xios_define_calendar(type="user_defined", &
110                              timestep=timestep, &
111                              day_length=nint(daysec), &
112                              start_date=start_date, &
113                              time_origin=time_origin, &
114                              month_lengths=[30,30,30,30,30,30,30,30,30,30,30,30])
115   
116    ! 4. Finalize the context:
117    if (prt_level>=10) write(*,*) "initialize_xios_output: call wxios_closedef"
118    CALL wxios_closedef()
119
120!$OMP END MASTER
121!$OMP BARRIER
122 
123  END SUBROUTINE initialize_xios_output
124
125!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
126
127  SUBROUTINE finalize_xios_output
128  USE xios
129  IMPLICIT NONE
130!$OMP BARRIER   
131!$OMP MASTER
132    CALL xios_context_finalize
133!$OMP END MASTER   
134!$OMP BARRIER   
135 
136  END SUBROUTINE finalize_xios_output
137
138!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
139
140  SUBROUTINE update_xios_timestep
141  USE xios
142  IMPLICIT NONE
143    CALL set_xios_context
144!$OMP MASTER
145    time_it=time_it+1
146    CALL xios_update_calendar(time_it)
147!$OMP END MASTER   
148  END SUBROUTINE update_xios_timestep
149
150!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
151
152  SUBROUTINE set_xios_context
153  USE XIOS
154  IMPLICIT NONE
155    TYPE(xios_context) :: ctx_hdl
156
157!$OMP MASTER
158    CALL xios_get_handle(context_id,ctx_hdl)
159    CALL xios_set_current_context(ctx_hdl)
160!$OMP END MASTER   
161  END SUBROUTINE set_xios_context
162
163!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
164
165  SUBROUTINE histwrite0d_xios(field_name,field)
166  USE xios, ONLY: xios_send_field
167  USE print_control_mod, ONLY: prt_level, lunout
168  IMPLICIT NONE
169 
170    CHARACTER(LEN=*), INTENT(IN) :: field_name
171    REAL, INTENT(IN) :: field
172   
173    IF (prt_level >= 10) WRITE(lunout,*)'Begin histrwrite0d_xios ',trim(field_name)
174   
175!$OMP MASTER
176    CALL xios_send_field(field_name,field)
177!$OMP END MASTER
178   
179    IF (prt_level >= 10) WRITE(lunout,*)'End histrwrite0d_xios ',trim(field_name)
180   
181  END SUBROUTINE histwrite0d_xios
182
183!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
184
185  SUBROUTINE histwrite2d_xios(field_name,field)
186  USE dimphy, only: klon
187  USE mod_phys_lmdz_para, only: gather_omp, grid1Dto2D_mpi, &
188                                jj_nb, klon_mpi
189  USE xios, only: xios_send_field
190  USE print_control_mod, ONLY: prt_level, lunout
191  USE mod_grid_phy_lmdz, ONLY: nbp_lon
192  IMPLICIT NONE
193
194    CHARACTER(LEN=*), INTENT(IN) :: field_name
195    REAL, DIMENSION(:), INTENT(IN) :: field
196     
197    REAL,DIMENSION(klon_mpi) :: buffer_omp
198    REAL :: Field2d(nbp_lon,jj_nb)
199
200    IF (prt_level >= 10) WRITE(lunout,*)'Begin histrwrite2d_xios ',trim(field_name)
201
202    IF (SIZE(field)/=klon) CALL abort_physic('iophy::histwrite2d_xios','Field first DIMENSION not equal to klon',1)
203   
204    CALL Gather_omp(field,buffer_omp)   
205!$OMP MASTER
206    CALL grid1Dto2D_mpi(buffer_omp,Field2d)
207   
208    CALL xios_send_field(field_name, Field2d)
209!$OMP END MASTER   
210
211    IF (prt_level >= 10) WRITE(lunout,*)'End histrwrite2d_xios ',trim(field_name)
212  END SUBROUTINE histwrite2d_xios
213
214!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
215
216  SUBROUTINE histwrite3d_xios(field_name, field)
217  USE dimphy, only: klon, klev
218  USE mod_phys_lmdz_para, only: gather_omp, grid1Dto2D_mpi, &
219                                jj_nb, klon_mpi
220  USE xios, only: xios_send_field
221  USE print_control_mod, ONLY: prt_level,lunout
222  USE mod_grid_phy_lmdz, ONLY: nbp_lon
223
224  IMPLICIT NONE
225
226    CHARACTER(LEN=*), INTENT(IN) :: field_name
227    REAL, DIMENSION(:,:), INTENT(IN) :: field ! --> field(klon,:)
228
229    REAL,DIMENSION(klon_mpi,SIZE(field,2)) :: buffer_omp
230    REAL :: Field3d(nbp_lon,jj_nb,SIZE(field,2))
231    INTEGER :: ip, n, nlev
232
233  IF (prt_level >= 10) write(lunout,*)'Begin histrwrite3d_xios ',trim(field_name)
234
235    !Et on.... écrit
236    IF (SIZE(field,1)/=klon) CALL abort_physic('iophy::histwrite3d','Field first DIMENSION not equal to klon',1)
237    nlev=SIZE(field,2)
238
239
240    CALL Gather_omp(field,buffer_omp)
241!$OMP MASTER
242    CALL grid1Dto2D_mpi(buffer_omp,field3d)
243
244    CALL xios_send_field(field_name, Field3d(:,:,1:nlev))
245!$OMP END MASTER   
246
247    IF (prt_level >= 10) write(lunout,*)'End histrwrite3d_xios ',trim(field_name)
248  END SUBROUTINE histwrite3d_xios
249
250#endif
251
252END MODULE xios_output_mod
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