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physiq_mod.F90 @ 3801

Last change on this file since 3801 was 3773, checked in by afalco, 8 months ago
Generic: allow to write controle in XIOS output. AF
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1	module physiq_mod
2
3	implicit none
4
5	contains
6
7	subroutine physiq(ngrid,nlayer,nq, &
8	firstcall,lastcall, &
9	pday,ptime,ptimestep, &
10	pplev,pplay,pphi, &
11	pu,pv,pt,pq, &
12	flxw, &
13	pdu,pdv,pdt,pdq,pdpsrf)
14
15	!!
16	use write_field_phy, only: Writefield_phy
17	!!
18	use ioipsl_getin_p_mod, only: getin_p
19	use radinc_h, only : L_NSPECTI,L_NSPECTV,naerkind, corrkdir, banddir
20	use watercommon_h, only : RLVTT, Psat_water,epsi,su_watercycle, RW, T_h2o_ice_liq
21	use generic_cloud_common_h, only : epsi_generic, Psat_generic
22	use thermcell_mod, only: init_thermcell_mod
23	use gases_h, only: gnom, gfrac, ngasmx
24	use radcommon_h, only: sigma, glat, grav, BWNV, WNOI, DWNI, DWNV, WNOV
25	use suaer_corrk_mod, only: suaer_corrk
26	use radii_mod, only: h2o_reffrad, co2_reffrad
27	use aerosol_mod, only: iniaerosol, iaero_co2, iaero_h2o
28	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe, &
29	dryness
30	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
31	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
32	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
33	use geometry_mod, only: latitude, longitude, cell_area
34	USE comgeomfi_h, only: totarea, totarea_planet
35	USE tracer_h, only: noms, mmol, radius, rho_q, qext, &
36	alpha_lift, alpha_devil, qextrhor, &
37	igcm_h2o_ice, igcm_h2o_vap, igcm_dustbin, &
38	igcm_co2_ice, nesp, is_chim, is_condensable,constants_epsi_generic
39	use time_phylmdz_mod, only: diagfi_output_rate, nday
40	use phyetat0_mod, only: phyetat0
41	use tabfi_mod, only: tab_cntrl_mod
42	use surfini_mod, only: surfini
43	use wstats_mod, only: callstats, wstats, mkstats
44	use phyredem, only: physdem0, physdem1
45	!! use slab_ice_h, only: capcalocean, capcalseaice,capcalsno, &
46	!! noceanmx
47	!! use ocean_slab_mod, only :ocean_slab_init, ocean_slab_ice, &
48	!! capcalocean, capcalseaice,capcalsno, nslay, &
49	!! ocean_slab_final
50	!! use surf_heat_transp_mod,only :init_masquv
51	use ocean_slab_mod, only :ocean_slab_init, ocean_slab_noice, ocean_slab_ice, &
52	ocean_slab_frac, ocean_slab_get_vars, &
53	capcalocean, capcalseaice,capcalsno, nslay, knon, &
54	ocean_slab_final
55	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
56	use mod_phys_lmdz_para, only : is_master
57	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
58	obliquit, nres, z0
59	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
60	use time_phylmdz_mod, only: daysec
61	use callkeys_mod, only: albedo_spectral_mode, calladj, calldifv, &
62	calllott_nonoro, callrad, callsoil, nosurf, &
63	calltherm, CLFvarying, co2cond, corrk, diagdtau, &
64	diurnal, enertest, fat1au, flatten, j2, &
65	hydrology, intheat, iradia, kastprof, &
66	lwrite, mass_redistrib, massplanet, meanOLR, &
67	nearco2cond, newtonian, noseason_day, oblate, &
68	ok_slab_ocean, photochem, rings_shadow, rmean, &
69	season, sedimentation,generic_condensation, &
70	specOLR, callthermos, callvolcano, &
71	startphy_file, testradtimes, tlocked, &
72	tracer, UseTurbDiff, water, watercond, &
73	waterrain, generic_rain, global1d, szangle, &
74	moistadjustment, moistadjustment_generic, varspec, varspec_data, nvarlayer
75	use generic_tracer_index_mod, only: generic_tracer_index
76	use nonoro_gwd_ran_mod, only: nonoro_gwd_ran
77	use check_fields_mod, only: check_physics_fields
78	use conc_mod, only: rnew, cpnew, ini_conc_mod
79	use phys_state_var_mod
80	use callcorrk_mod, only: callcorrk
81	use conduction_mod, only: conduction
82	use volcano_mod, only: volcano
83	use pindex_mod, only: pindex
84	use convadj_mod, only: convadj
85	use vdifc_mod, only: vdifc
86	use turbdiff_mod, only: turbdiff
87	use turb_mod, only : q2,sensibFlux,turb_resolved
88	use callsedim_mod, only: callsedim
89	use mass_redistribution_mod, only: mass_redistribution
90	use condensation_generic_mod, only: condensation_generic
91	use datafile_mod, only: datadir
92	use newton_cooling_hotJ, only: newtcool_MOCHA ! LT, adding for MOCHA protocol
93
94	#ifndef MESOSCALE
95	USE vertical_layers_mod, ONLY: ap,bp,aps,bps,presnivs,pseudoalt
96	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
97	#else
98	use comm_wrf, only : comm_HR_SW, comm_HR_LW, &
99	comm_CLOUDFRAC,comm_TOTCLOUDFRAC, comm_RH, &
100	comm_SURFRAIN,comm_REEVAP,comm_HR_DYN, &
101	comm_DQICE,comm_DQVAP,comm_ALBEQ, &
102	comm_FLUXTOP_DN,comm_FLUXABS_SW, &
103	comm_FLUXTOP_LW,comm_FLUXSURF_SW, &
104	comm_FLUXSURF_LW,comm_FLXGRD, &
105	comm_DTRAIN,comm_DTLSC,comm_H2OICE_REFF, &
106	comm_LATENT_HF
107
108	#endif
109
110	#ifdef CPP_XIOS
111	use xios_output_mod, only: initialize_xios_output, &
112	update_xios_timestep, &
113	send_xios_field
114	use wxios, only: wxios_context_init, xios_context_finalize
115	#endif
116	use write_output_mod, only: write_output
117
118	implicit none
119
120
121	!==================================================================
122	!
123	! Purpose
124	! -------
125	! Central subroutine for all the physics parameterisations in the
126	! universal model. Originally adapted from the Mars LMDZ model.
127	!
128	! The model can be run without or with tracer transport
129	! depending on the value of "tracer" in file "callphys.def".
130	!
131	!
132	! It includes:
133	!
134	! I. Initialization :
135	! I.1 Firstcall initializations.
136	! I.2 Initialization for every call to physiq.
137	!
138	! II. Compute radiative transfer tendencies (longwave and shortwave) :
139	! II.a Option 1 : Call correlated-k radiative transfer scheme.
140	! II.b Option 2 : Call Newtonian cooling scheme.
141	! II.c Option 3 : Atmosphere has no radiative effect.
142	!
143	! III. Vertical diffusion (turbulent mixing) :
144	!
145	! IV. Convection :
146	! IV.a Thermal plume model
147	! IV.b Dry convective adjusment
148	!
149	! V. Condensation and sublimation of gases (currently just CO2).
150	!
151	! VI. Tracers
152	! VI.1. Water and water ice.
153	! VI.2 Photochemistry
154	! VI.3. Aerosols and particles.
155	! VI.4. Updates (pressure variations, surface budget).
156	! VI.5. Slab Ocean.
157	! VI.6. Surface Tracer Update.
158	!
159	! VII. Surface and sub-surface soil temperature.
160	!
161	! VIII. Perform diagnostics and write output files.
162	!
163	!
164	! arguments
165	! ---------
166	!
167	! INPUT
168	! -----
169	!
170	! ngrid Size of the horizontal grid.
171	! nlayer Number of vertical layers.
172	! nq Number of advected fields.
173	!
174	! firstcall True at the first call.
175	! lastcall True at the last call.
176	!
177	! pday Number of days counted from the North. Spring equinoxe.
178	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
179	! ptimestep timestep (s).
180	!
181	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
182	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
183	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
184	!
185	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
186	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
187	!
188	! pt(ngrid,nlayer) Temperature (K).
189	!
190	! pq(ngrid,nlayer,nq) Advected fields.
191	!
192	! pudyn(ngrid,nlayer) \
193	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
194	! ptdyn(ngrid,nlayer) / corresponding variables.
195	! pqdyn(ngrid,nlayer,nq) /
196	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
197	!
198	! OUTPUT
199	! ------
200	!
201	! pdu(ngrid,nlayer) \
202	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
203	! pdt(ngrid,nlayer) / variables due to physical processes.
204	! pdq(ngrid,nlayer) /
205	! pdpsrf(ngrid) /
206	!
207	!
208	! Authors
209	! -------
210	! Frederic Hourdin 15/10/93
211	! Francois Forget 1994
212	! Christophe Hourdin 02/1997
213	! Subroutine completely rewritten by F. Forget (01/2000)
214	! Water ice clouds: Franck Montmessin (update 06/2003)
215	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
216	! New correlated-k radiative scheme: R. Wordsworth (2009)
217	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
218	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
219	! To F90: R. Wordsworth (2010)
220	! New turbulent diffusion scheme: J. Leconte (2012)
221	! Loops converted to F90 matrix format: J. Leconte (2012)
222	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
223	! Purge of the code : M. Turbet (2015)
224	! Photochemical core developped by F. Lefevre: B. Charnay (2017)
225	!==================================================================
226
227
228	! 0. Declarations :
229	! ------------------
230
231	include "netcdf.inc"
232
233	! Arguments :
234	! -----------
235
236	! INPUTS:
237	! -------
238
239	integer,intent(in) :: ngrid ! Number of atmospheric columns.
240	integer,intent(in) :: nlayer ! Number of atmospheric layers.
241	integer,intent(in) :: nq ! Number of tracers.
242
243	logical,intent(in) :: firstcall ! Signals first call to physics.
244	logical,intent(in) :: lastcall ! Signals last call to physics.
245
246	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
247	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
248	real,intent(in) :: ptimestep ! Physics timestep (s).
249	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
250	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
251	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
252	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
253	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
254	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
255	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
256	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
257
258	! OUTPUTS:
259	! --------
260
261	! Physical tendencies :
262
263	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
264	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
265	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
266	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
267	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
268
269	! Local saved variables:
270	! ----------------------
271	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
272	integer,save :: icount ! Counter of calls to physiq during the run.
273	!$OMP THREADPRIVATE(day_ini,icount)
274
275	! Local variables :
276	! -----------------
277
278	! Aerosol (dust or ice) extinction optical depth at reference wavelength
279	! for the "naerkind" optically active aerosols:
280
281	real,save,allocatable :: aerosol(:,:,:) ! Aerosols
282	!$OMP THREADPRIVATE(aerosol)
283	real zh(ngrid,nlayer) ! Potential temperature (K).
284	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
285	real omega(ngrid,nlayer) ! omega velocity (Pa/s, >0 when downward)
286
287	integer l,ig,ierr,iq,nw,isoil,iesp, igcm_generic_vap, igcm_generic_ice
288	logical call_ice_vap_generic ! to call only one time the ice/vap pair of a tracer
289
290	real zls ! Solar longitude (radians).
291	real zlss ! Sub solar point longitude (radians).
292	real zday ! Date (time since Ls=0, calculated in sols).
293	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
294	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
295
296	! VARIABLES for the thermal plume model
297
298	real f(ngrid) ! Mass flux norm
299	real fm(ngrid,nlayer+1) ! Mass flux
300	real fm_bis(ngrid,nlayer) ! Recasted fm
301	real entr(ngrid,nlayer) ! Entrainment
302	real detr(ngrid,nlayer) ! Detrainment
303	real dqevap(ngrid,nlayer,nq) ! water tracer mass mixing ratio variations due to evaporation
304	real dtevap(ngrid,nlayer) ! temperature variation due to evaporation
305	real zqtherm(ngrid,nlayer,nq) ! vapor mass mixing ratio after evaporation
306	real zttherm(ngrid,nlayer) ! temperature after evaporation
307	real fraca(ngrid,nlayer+1) ! Fraction of the surface that plumes occupies
308	real zw2(ngrid,nlayer+1) ! Vertical speed
309	real zw2_bis(ngrid,nlayer) ! Recasted zw2
310
311	! TENDENCIES due to various processes :
312
313	! For Surface Temperature : (K/s)
314	real zdtsurf(ngrid) ! Cumulated tendencies.
315	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
316	real zdtsurfc(ngrid) ! Condense_co2 routine.
317	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
318	real zdtsurf_hyd(ngrid) ! Hydrol routine.
319
320	! For Thermosphere : (K/s)
321	real zdtconduc(ngrid,nlayer)
322
323	! For Atmospheric Temperatures : (K/s)
324	real dtlscale(ngrid,nlayer) ! Largescale routine.
325	real dt_generic_condensation(ngrid,nlayer) ! condensation_generic routine.
326	real zdtc(ngrid,nlayer) ! Condense_co2 routine.
327	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
328	real zdttherm(ngrid,nlayer) ! Calltherm routine.
329	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
330	real zdtrain(ngrid,nlayer) ! Rain routine.
331	real zdtrain_generic(ngrid,nlayer) ! Rain_generic routine.
332	real dtmoist(ngrid,nlayer) ! Moistadj routine.
333	real dt_ekman(ngrid,nslay), dt_hdiff(ngrid,nslay), dt_gm(ngrid,nslay) ! Slab_ocean routine.
334	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
335	real zdtchim(ngrid,nlayer) ! Calchim routine.
336
337	! For Surface Tracers : (kg/m2/s)
338	real dqsurf(ngrid,nq) ! Cumulated tendencies.
339	real zdqsurfc(ngrid) ! Condense_co2 routine.
340	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
341	real zdqssed(ngrid,nq) ! Callsedim routine.
342	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
343	real zdqsrain(ngrid), zdqssnow(ngrid) ! Rain routine.
344	real zdqsrain_generic(ngrid,nq), zdqssnow_generic(ngrid,nq) ! Rain_generic routine.
345	real dqs_hyd(ngrid,nq) ! Hydrol routine.
346	real reevap_precip(ngrid) ! re-evaporation flux of precipitation (integrated over the atmospheric column)
347	real reevap_precip_generic(ngrid,nq)
348
349	! For Tracers : (kg/kg_of_air/s)
350	real zdqc(ngrid,nlayer,nq) ! Condense_co2 routine.
351	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
352	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
353	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
354	real zdqtherm(ngrid,nlayer,nq) ! Calltherm routine.
355	real zdqsed(ngrid,nlayer,nq) ! Callsedim routine.
356	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
357	real zdqrain(ngrid,nlayer,nq) ! Rain routine.
358	real dqmoist(ngrid,nlayer,nq) ! Moistadj routine.
359	real dqvaplscale(ngrid,nlayer) ! Largescale routine.
360	real dqcldlscale(ngrid,nlayer) ! Largescale routine.
361	real dqvaplscale_generic(ngrid,nlayer,nq) ! condensation_generic routine.
362	real dqcldlscale_generic(ngrid,nlayer,nq) ! condensation_generic routine.
363	real dq_rain_generic_vap(ngrid,nlayer,nq) ! rain_generic routine
364	real dq_rain_generic_cld(ngrid,nlayer,nq) ! rain_generic routine
365	REAL,allocatable,save :: zdqchim(:,:,:) ! Calchim_asis routine
366	REAL,allocatable,save :: zdqschim(:,:) ! Calchim_asis routine
367	REAL zdqradio(ngrid,nlayer,nq) ! Radioactive decay
368	!$OMP THREADPRIVATE(zdqchim,zdqschim)
369	real zdqvolc(ngrid,nlayer,nq) ! injection by volcanoes (kg/kg_of_air/s)
370
371	REAL array_zero1(ngrid)
372	REAL array_zero2(ngrid,nlayer)
373
374	! For Winds : (m/s/s)
375	real zdvadj(ngrid,nlayer), zduadj(ngrid,nlayer) ! Convadj routine.
376	real zdutherm(ngrid,nlayer), zdvtherm(ngrid,nlayer) ! Calltherm routine.
377	real zdumr(ngrid,nlayer), zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
378	real zdvdif(ngrid,nlayer), zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
379	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
380	real zdhadj(ngrid,nlayer) ! Convadj routine.
381
382	! For Pressure and Mass :
383	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
384	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
385	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
386
387
388
389	! Local variables for LOCAL CALCULATIONS:
390	! ---------------------------------------
391	real zflubid(ngrid)
392	real zplanck(ngrid),zpopsk(ngrid,nlayer)
393	real ztim1,ztim2,ztim3, z1,z2
394	real ztime_fin
395	real zdh(ngrid,nlayer)
396	real gmplanet
397	real taux(ngrid),tauy(ngrid)
398
399
400	! local variables for DIAGNOSTICS : (diagfi & stat)
401	! -------------------------------------------------
402
403	real tice(ngrid) ! Sea ice temperature
404
405	real ps(ngrid) ! Surface Pressure.
406	real zt(ngrid,nlayer) ! Atmospheric Temperature.
407	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
408	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
409	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
410	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
411	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
412
413	real reff(ngrid,nlayer) ! Effective dust radius (used if doubleq=T).
414	real vmr(ngrid,nlayer) ! volume mixing ratio
415	real time_phys
416
417	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
418
419	real qcol(ngrid,nq) ! Tracer Column Mass (kg/m2).
420
421	! included by RW for H2O Manabe scheme
422	real rneb_man(ngrid,nlayer) ! H2O cloud fraction (moistadj).
423	real rneb_lsc(ngrid,nlayer) ! H2O cloud fraction (large scale).
424
425
426	! to test energy conservation (RW+JL)
427	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
428	real dEtot, dEtots, AtmToSurf_TurbFlux
429	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
430	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
431
432	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
433
434	real dtmoist_max,dtmoist_min
435	real dItot, dItot_tmp, dVtot, dVtot_tmp
436
437
438	real h2otot ! Total Amount of water. For diagnostic.
439	real icesrf,liqsrf,icecol,vapcol ! Total Amounts of water (ice,liq,vap). For diagnostic.
440	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
441	logical,save :: watertest
442	!$OMP THREADPRIVATE(watertest)
443
444	real qsat(ngrid,nlayer) ! Water Vapor Volume Mixing Ratio at saturation (kg/kg_of_air).
445	real RH(ngrid,nlayer) ! Relative humidity.
446	real psat_tmp
447
448	real qsat_generic(ngrid,nlayer,nq) ! generic condensable tracers (GCS) specific concentration at saturation (kg/kg_of_air).
449	real RH_generic(ngrid,nlayer,nq) ! generic condensable tracers (GCS) Relative humidity.
450	real rneb_generic(ngrid,nlayer,nq) ! GCS cloud fraction (generic condensation).
451	real psat_tmp_generic
452	real, save :: metallicity ! metallicity of planet --- is not used here, but necessary to call function Psat_generic
453	!$OMP THREADPRIVATE(metallicity)
454
455	real reffrad_generic_zeros_for_wrf(ngrid,nlayer) ! !!! this is temporary, it is only a list of zeros, it will be replaced when a generic aerosol will be implemented
456
457	logical clearsky ! For double radiative transfer call. By BC
458
459	! For Clear Sky Case.
460	real fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
461	real tau_col1(ngrid) ! For aerosol optical depth diagnostic.
462	real OLR_nu1(ngrid,L_NSPECTI) ! Clear sky TOA LW radiation in each IR band
463	real OSR_nu1(ngrid,L_NSPECTV) ! Clear sky TOA SW radiation in each VI band
464	real GSR_nu1(ngrid,L_NSPECTV) ! Clear sky Surface SW radiation in each VI band
465	real int_dtaui1(ngrid,nlayer,L_NSPECTI),int_dtauv1(ngrid,nlayer,L_NSPECTV) ! For optical thickness diagnostics.
466	real tf, ntf
467
468	real net_fluxsurf_lw(ngrid) ! net longwave flux at the surface (for diagnostics only)
469
470	real nconsMAX, vdifcncons(ngrid), cadjncons(ngrid) ! Vdfic water conservation test. By RW
471
472	real muvar(ngrid,nlayer+1) ! For Runaway Greenhouse 1D study. By RW
473
474	! For fixed variable molar mass
475	real, dimension(:),allocatable,save :: p_var
476	real, dimension(:),allocatable,save :: mu_var
477	real, dimension(:,:),allocatable,save :: frac_var
478	!$OMP THREADPRIVATE(p_var,mu_var,frac_var)
479	real :: mu_vari(nlayer)
480	real :: muvari(ngrid,nlayer)
481	integer ios,k
482	character*100 dt_file
483
484	real,save,allocatable :: reffcol(:,:)
485	!$OMP THREADPRIVATE(reffcol)
486
487	! Non-oro GW tendencies
488	REAL d_u_hin(ngrid,nlayer), d_v_hin(ngrid,nlayer)
489	REAL d_t_hin(ngrid,nlayer)
490	! Diagnostics 2D of gw_nonoro
491	REAL zustrhi(ngrid), zvstrhi(ngrid)
492
493
494	real :: tsurf2(ngrid)
495	!! real :: flux_o(ngrid),flux_g(ngrid)
496	real :: flux_g(ngrid)
497	real :: flux_sens_lat(ngrid)
498	real :: qsurfint(ngrid,nq)
499	#ifdef MESOSCALE
500	REAL :: lsf_dt(nlayer)
501	REAL :: lsf_dq(nlayer)
502	#endif
503
504	! flags to trigger extra sanity checks
505	logical, save :: check_physics_inputs=.false.
506	logical, save :: check_physics_outputs=.false.
507	!$OPM THREADPRIVATE(check_physics_inputs,check_physics_outputs)
508
509	! Misc
510	character*2 :: str2
511	character(len=10) :: tmp1
512	character(len=10) :: tmp2
513	!==================================================================================================
514
515	! -----------------
516	! I. INITIALISATION
517	! -----------------
518
519	! --------------------------------
520	! I.1 First Call Initialisation.
521	! --------------------------------
522	if (firstcall) then
523	call getin_p("check_physics_inputs", check_physics_inputs)
524	call getin_p("check_physics_outputs", check_physics_outputs)
525
526	! Allocate saved arrays (except for 1D model, where this has already
527	! been done)
528	#ifndef MESOSCALE
529	if (ngrid>1) call phys_state_var_init(nq)
530	#endif
531
532	! Variables set to 0
533	! ~~~~~~~~~~~~~~~~~~
534	dtrad(:,:) = 0.0
535	fluxrad(:) = 0.0
536	tau_col(:) = 0.0
537	zdtsw(:,:) = 0.0
538	zdtlw(:,:) = 0.0
539	zdtconduc(:,:) = 0.0
540
541	! Initialize fixed variable mu
542	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
543
544	if(varspec) then
545	IF (.NOT.ALLOCATED(p_var)) ALLOCATE(p_var(nvarlayer))
546	IF (.NOT.ALLOCATED(mu_var)) ALLOCATE(mu_var(nvarlayer))
547	IF (.NOT.ALLOCATED(frac_var)) ALLOCATE(frac_var(nvarlayer,ngasmx))
548	p_var = 0.0
549	mu_var = 0.0
550	frac_var = 0.0
551	muvari = 0.0
552	dt_file=TRIM(varspec_data)
553	open(33,file=dt_file,form='formatted',status='old',iostat=ios)
554	if (ios.ne.0) then ! file not found
555	write(,) 'Error from varspec'
556	write(,) 'Data file ',trim(varspec_data),' not found.'
557	write(,) 'Check that the data is in your run repository.'
558	call abort_physic !a verifier
559	else
560	do k=1,nvarlayer
561	read(33,*) p_var(k), mu_var(k),frac_var(k,1:ngasmx)
562	!The order of columns in frac_var must correspond to order of molecules gases.def
563	!The format of your file must be:
564	! pressure(k) molar_mass(k), molar_fraction_of_gas_1(k), molar_fraction_of_gas_2(k),..., molar_fraction_of_gas_ngasmx(k)
565	enddo
566	endif
567	close(33)
568	else
569	IF (.NOT.ALLOCATED(p_var)) ALLOCATE(p_var(nlayer))
570	IF (.NOT.ALLOCATED(mu_var)) ALLOCATE(mu_var(nlayer))
571	IF (.NOT.ALLOCATED(frac_var)) ALLOCATE(frac_var(nlayer,ngasmx))
572	endif
573
574	! Initialize tracer names, indexes and properties.
575	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
576	IF (.NOT.ALLOCATED(noms)) ALLOCATE(noms(nq)) ! (because noms is an argument of physdem1 whether or not tracer is on)
577	if (tracer) then
578	call initracer(ngrid,nq)
579	if(photochem) then
580	call ini_conc_mod(ngrid,nlayer)
581	IF (.NOT.ALLOCATED(zdqchim)) ALLOCATE(zdqchim(ngrid,nlayer,nesp))
582	IF (.NOT.ALLOCATED(zdqschim)) ALLOCATE(zdqschim(ngrid,nesp))
583	endif
584	endif
585	! Initialize aerosol indexes.
586	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~
587	call iniaerosol
588	! allocate related local arrays
589	! (need be allocated instead of automatic because of "naerkind")
590	allocate(aerosol(ngrid,nlayer,naerkind))
591	allocate(reffcol(ngrid,naerkind))
592
593	#ifdef CPP_XIOS
594	! Initialize XIOS context
595	write(,) "physiq: call wxios_context_init"
596	CALL wxios_context_init
597	#endif
598
599	! Read 'startfi.nc' file.
600	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
601	#ifndef MESOSCALE
602	call phyetat0(startphy_file, &
603	ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
604	day_ini,time_phys,tsurf,tsoil,emis,albedo, &
605	q2,qsurf,cloudfrac,totcloudfrac,hice, &
606	rnat,pctsrf_sic,tslab,tsea_ice,tice,sea_ice)
607
608	#else
609
610	day_ini = pday
611	#endif
612
613	#ifndef MESOSCALE
614	if (.not.startphy_file) then
615	! additional "academic" initialization of physics
616	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
617	tsurf(:)=pt(:,1)
618	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
619	do isoil=1,nsoilmx
620	tsoil(1:ngrid,isoil)=tsurf(1:ngrid)
621	enddo
622	if (is_master) write(,) "Physiq: initializing day_ini to pday !"
623	day_ini=pday
624	endif
625	#endif
626	if (pday.ne.day_ini) then
627	write(,) "ERROR in physiq.F90:"
628	write(,) "bad synchronization between physics and dynamics"
629	write(,) "dynamics day: ",pday
630	write(,) "physics day: ",day_ini
631	stop
632	endif
633
634	write (,) 'In physiq day_ini =', day_ini
635
636	! Initialize albedo calculation.
637	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
638	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground,&
639	albedo_snow_SPECTV,albedo_co2_ice_SPECTV)
640
641	! Initialize orbital calculation.
642	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
643	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
644
645
646	if(tlocked)then
647	print*,'Planet is tidally locked at resonance n=',nres
648	print*,'Make sure you have the right rotation rate!!!'
649	endif
650
651	! Initialize oceanic variables.
652	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
653
654	if (ok_slab_ocean)then
655
656	!! call ocean_slab_init(ngrid,ptimestep, tslab, &
657	!! sea_ice, pctsrf_sic)
658
659	!! call ini_surf_heat_transp_mod()
660
661	knindex(:) = 0
662	knon = 0
663
664	do ig=1,ngrid
665	zmasq(ig)=1
666	! knindex(ig) = ig
667	if (nint(rnat(ig)).eq.0) then ! rnat = 0 (ocean), 1 (continent)
668	zmasq(ig)=0
669	knon=knon+1
670	knindex(knon)=ig
671	endif
672	enddo
673
674	call ocean_slab_init(ptimestep, pctsrf_sic, tslab, tice, sea_ice, zmasq)
675
676	!! CALL init_masquv(ngrid,zmasq)
677	! ensure that "slab" variables match "physiq" ones
678	call ocean_slab_get_vars(ngrid, tslab, tice, sea_ice, flux_g, &
679	dt_hdiff, dt_ekman, dt_gm)
680
681	endif ! end of 'ok_slab_ocean'.
682
683
684	! Initialize soil.
685	! ~~~~~~~~~~~~~~~~
686	if (callsoil) then
687
688	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
689	ptimestep,tsurf,tsoil,capcal,fluxgrd)
690
691	if (ok_slab_ocean) then
692	! mimic what is done during a regular time step
693	do ig=1,ngrid
694	fluxgrdocean(ig)=fluxgrd(ig)
695	if (nint(rnat(ig)).eq.0) then
696	capcal(ig)=capcalocean
697	fluxgrd(ig)=0.
698	! Dividing by cell area to have flux in W/m2
699	fluxgrdocean(ig)=flux_g(ig)+(1-pctsrf_sic(ig))*(dt_hdiff(ig,1)+dt_ekman(ig,1)+dt_gm(ig,1))/cell_area(ig)
700	do iq=1,nsoilmx
701	tsoil(ig,iq)=tsurf(ig)
702	enddo
703	if (pctsrf_sic(ig).gt.0.5) then
704	capcal(ig)=capcalseaice
705	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
706	capcal(ig)=capcalsno
707	endif
708	endif ! of if (pctsrf_sic(ig).gt.0.5)
709	endif ! of if (nint(rnat(ig)).eq.0)
710	enddo ! of do ig=1,ngrid
711	endif ! end of 'ok_slab_ocean'.
712
713	else ! else of 'callsoil'.
714
715	print*,'WARNING! Thermal conduction in the soil turned off'
716	capcal(:)=1.e6
717	fluxgrd(:)=intheat
718	print*,'Flux from ground = ',intheat,' W m^-2'
719
720	endif ! end of 'callsoil'.
721
722	icount=1
723
724	! Here is defined the type of the surface : Continent or Ocean.
725	! BC2014 : This is now already done in newstart.
726	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
727	if (.not.ok_slab_ocean) then
728
729	rnat(:)=1.
730	if (.not.nosurf) then ! inertiedat only defined if there is a surface
731	do ig=1,ngrid
732	if(inertiedat(ig,1).gt.1.E4)then
733	rnat(ig)=0
734	endif
735	enddo
736
737	print*,'WARNING! Surface type currently decided by surface inertia'
738	print*,'This should be improved e.g. in newstart.F'
739	endif
740	endif ! end of 'ok_slab_ocean'.
741
742
743	! Initialize surface history variable.
744	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
745	qsurf_hist(:,:)=qsurf(:,:)
746
747	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
748	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
749	ztprevious(:,:)=pt(:,:)
750	zuprevious(:,:)=pu(:,:)
751
752	! Set temperature just above condensation temperature (for Early Mars)
753	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
754	if(nearco2cond) then
755	write(,)' WARNING! Starting at Tcond+1K'
756	do l=1, nlayer
757	do ig=1,ngrid
758	pdt(ig,l)= ((-3167.8)/(log(.01*pplay(ig,l))-23.23)+4 &
759	-pt(ig,l)) / ptimestep
760	enddo
761	enddo
762	endif
763
764	if(meanOLR)then
765	call system('rm -f rad_bal.out') ! to record global radiative balance.
766	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
767	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
768	endif
769
770
771	watertest=.false.
772	if(water)then ! Initialize variables for water cycle
773
774	if(enertest)then
775	watertest = .true.
776	endif
777
778	endif
779
780	! Set metallicity for GCS
781	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
782	metallicity=0.0 ! default value --- is not used here but necessary to call function Psat_generic
783	call getin_p("metallicity",metallicity) ! --- is not used here but necessary to call function Psat_generic
784
785	! Set some parameters for the thermal plume model
786	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
787	if (calltherm) then
788	CALL init_thermcell_mod(g, rcp, r, pi, T_h2o_ice_liq, RW)
789	endif
790
791	call su_watercycle ! even if we don't have a water cycle, we might
792	! need epsi for the wvp definitions in callcorrk.F
793	! or RETV, RLvCp for the thermal plume model
794
795	#ifndef MESOSCALE
796	!if (ngrid.ne.1) then ! Note : no need to create a restart file in 1d.
797	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
798	ptimestep,pday+nday,time_phys,cell_area, &
799	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
800	!endif
801
802	#endif
803	if (corrk) then
804	! We initialise the spectral grid here instead of
805	! at firstcall of callcorrk so we can output XspecIR, XspecVI
806	! when using Dynamico
807	print*, "physiq_mod: Correlated-k data base folder:",trim(datadir)
808	call getin_p("corrkdir",corrkdir)
809	print*,"corrkdir = ", corrkdir
810	write (tmp1, '(i4)') L_NSPECTI
811	write (tmp2, '(i4)') L_NSPECTV
812	banddir=trim(trim(adjustl(tmp1))//'x'//trim(adjustl(tmp2)))
813	banddir=trim(trim(adjustl(corrkdir))//'/'//trim(adjustl(banddir)))
814	call setspi !Basic infrared properties.
815	call setspv ! Basic visible properties.
816	call sugas_corrk ! Set up gaseous absorption properties.
817	call suaer_corrk ! Set up aerosol optical properties.
818	endif
819
820	! XIOS outputs
821	#ifdef CPP_XIOS
822
823	write(,) "physiq: call initialize_xios_output"
824	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
825	year_day,presnivs,pseudoalt,WNOI,WNOV)
826	#endif
827
828	write(,) "physiq: end of firstcall"
829	endif ! end of 'firstcall'
830
831
832	if (check_physics_inputs) then
833	!check the validity of input fields coming from the dynamics
834	call check_physics_fields("begin physiq:", pt, pu, pv, pplev, pq)
835	endif
836
837
838	! ------------------------------------------------------
839	! I.2 Initializations done at every physical timestep:
840	! ------------------------------------------------------
841
842	#ifdef CPP_XIOS
843	! update XIOS time/calendar
844	call update_xios_timestep
845	#endif
846
847	! Initialize various variables
848	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
849
850	if ( .not.nearco2cond ) then
851	pdt(1:ngrid,1:nlayer) = 0.0
852	endif
853	zdtsurf(1:ngrid) = 0.0
854	pdq(1:ngrid,1:nlayer,1:nq) = 0.0
855	dqsurf(1:ngrid,1:nq)= 0.0
856	pdu(1:ngrid,1:nlayer) = 0.0
857	pdv(1:ngrid,1:nlayer) = 0.0
858	pdpsrf(1:ngrid) = 0.0
859	zflubid(1:ngrid) = 0.0
860	flux_sens_lat(1:ngrid) = 0.0
861	taux(1:ngrid) = 0.0
862	tauy(1:ngrid) = 0.0
863	net_fluxsurf_lw(1:ngrid) = 0.0
864
865	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
866
867	! Compute Stellar Longitude (Ls), and orbital parameters.
868	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
869	if (season) then
870	call stellarlong(zday,zls)
871	else
872	call stellarlong(noseason_day,zls)
873	end if
874
875	call orbite(zls,dist_star,declin,right_ascen)
876
877	if (tlocked) then
878	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
879	elseif (diurnal) then
880	zlss=-2.pi(zday-.5)
881	else if(diurnal .eqv. .false.) then
882	zlss=9999.
883	endif
884
885
886	! Compute variations of g with latitude (oblate case).
887	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
888	if (oblate .eqv. .false.) then
889	glat(:) = g
890	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
891	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute glat (else set oblate=.false.)'
892	call abort
893	else
894	gmplanet = MassPlanetgrav1e24
895	do ig=1,ngrid
896	glat(ig)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
897	end do
898	endif
899
900	! Compute geopotential between layers.
901	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
902	zzlay(1:ngrid,1:nlayer)=pphi(1:ngrid,1:nlayer)
903	do l=1,nlayer
904	zzlay(1:ngrid,l)= zzlay(1:ngrid,l)/glat(1:ngrid)
905	enddo
906
907	zzlev(1:ngrid,1)=0.
908
909	do l=2,nlayer
910	do ig=1,ngrid
911	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
912	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
913	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
914	enddo
915	enddo
916
917	!Altitude of top interface (nlayer+1), using the thicknesss of the level below the top one. LT22
918
919	zzlev(1:ngrid,nlayer+1) = 2*zzlev(1:ngrid,nlayer)-zzlev(1:ngrid,nlayer-1)
920
921	! Compute potential temperature
922	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
923	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
924	do l=1,nlayer
925	do ig=1,ngrid
926	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
927	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
928	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
929	massarea(ig,l)=mass(ig,l)*cell_area(ig)
930	enddo
931	enddo
932
933	! Compute vertical velocity (m/s) from vertical mass flux
934	! w = F / (rhoarea) and rho = P/(rT)
935	! But first linearly interpolate mass flux to mid-layers
936	do l=1,nlayer-1
937	pw(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
938	enddo
939	pw(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
940	do l=1,nlayer
941	pw(1:ngrid,l)=(pw(1:ngrid,l)rpt(1:ngrid,l)) / &
942	(pplay(1:ngrid,l)*cell_area(1:ngrid))
943	enddo
944	! omega in Pa/s
945	do l=1,nlayer-1
946	omega(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
947	enddo
948	omega(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
949	do l=1,nlayer
950	omega(1:ngrid,l)=g*omega(1:ngrid,l)/cell_area(1:ngrid)
951	enddo
952
953	! ----------------------------------------------------------------
954	! Compute mean mass, cp, and R
955	! --------------------------------
956	#ifndef MESOSCALE
957	if(photochem) then
958	call concentrations(ngrid,nlayer,nq,pplay,pt,pdt,pq,pdq,ptimestep)
959	endif
960	#endif
961
962	!---------------------------------
963	! II. Compute radiative tendencies
964	!---------------------------------
965
966	! Compute local stellar zenith angles
967	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
968	if (tlocked) then
969	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
970	ztim1=SIN(declin)
971	ztim2=COS(declin)*COS(zlss)
972	ztim3=COS(declin)*SIN(zlss)
973
974	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
975	ztim1,ztim2,ztim3,mu0,fract, flatten)
976
977	elseif (diurnal) then
978	ztim1=SIN(declin)
979	ztim2=COS(declin)COS(2.pi*(zday-.5))
980	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
981
982	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
983	ztim1,ztim2,ztim3,mu0,fract, flatten)
984	else if(diurnal .eqv. .false.) then
985
986	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
987	! WARNING: this function appears not to work in 1D
988
989	if ((ngrid.eq.1).and.(global1d)) then ! Fixed zenith angle 'szangle' in 1D simulations w/ globally-averaged sunlight.
990	mu0 = cos(pi*szangle/180.0)
991	endif
992
993	endif
994
995	if (callrad) then
996
997	if( mod(icount-1,iradia).eq.0) then
998
999	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
1000	if(rings_shadow) then
1001	call call_rings(ngrid, ptime, pday, diurnal)
1002	endif
1003
1004
1005	if (corrk) then
1006
1007	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1008	! II.a Call correlated-k radiative transfer scheme
1009	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1010	if(kastprof)then
1011	print*,'kastprof should not = true here'
1012	call abort
1013	endif
1014	if(water) then
1015	! take into account water effect on mean molecular weight
1016	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,1:nlayer,igcm_h2o_vap))
1017	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,nlayer,igcm_h2o_vap))
1018	elseif(generic_condensation) then
1019	! take into account generic condensable specie (GCS) effect on mean molecular weight
1020	do iq=1,nq
1021
1022	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
1023
1024	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
1025
1026	epsi_generic=constants_epsi_generic(iq)
1027
1028	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi_generic-1.e0)*pq(1:ngrid,1:nlayer,igcm_generic_vap))
1029	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi_generic-1.e0)*pq(1:ngrid,nlayer,igcm_generic_vap))
1030
1031	endif
1032	end do ! do iq=1,nq loop on tracers
1033	elseif(varspec) then
1034	!take into account fixed variable mean molecular weight
1035	do ig=1,ngrid
1036	call pindex(p_var,mu_var,pplay(ig,:),nvarlayer,nlayer,mu_vari)
1037	muvari(ig,:) = mu_vari
1038	enddo
1039
1040	muvar(1:ngrid,1:nlayer) = muvari(1:ngrid,1:nlayer)
1041	muvar(1:ngrid,nlayer+1) = muvari(1:ngrid,nlayer)
1042
1043	else
1044	muvar(1:ngrid,1:nlayer+1)=mugaz
1045	endif
1046
1047
1048	if(ok_slab_ocean) then
1049	tsurf2(:)=tsurf(:)
1050	do ig=1,ngrid
1051	if (nint(rnat(ig))==0) then
1052	tsurf(ig)=((1.-pctsrf_sic(ig))tslab(ig,1)4+pctsrf_sic(ig)tsea_ice(ig)4)0.25
1053	endif
1054	enddo
1055	endif !(ok_slab_ocean)
1056
1057	! standard callcorrk
1058	clearsky=.false.
1059	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
1060	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
1061	tsurf,fract,dist_star,aerosol,muvar, &
1062	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
1063	fluxsurfabs_sw,fluxtop_lw, &
1064	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu,GSR_nu, &
1065	int_dtaui,int_dtauv, &
1066	tau_col,cloudfrac,totcloudfrac, &
1067	clearsky,p_var,frac_var,firstcall,lastcall)
1068
1069	!GG (feb2021): Option to "artificially" decrease the raditive time scale in
1070	!the deep atmosphere press > 0.1 bar. Suggested by MT.
1071	!! COEFF_RAD to be "tuned" to facilitate convergence of tendency
1072
1073	!coeff_rad=0. ! 0 values, it doesn't accelerate the convergence
1074	!coeff_rad=0.5
1075	!coeff_rad=1.
1076	!do l=1, nlayer
1077	! do ig=1,ngrid
1078	! if(pplay(ig,l).ge.1.d4) then
1079	! zdtsw(ig,l)=zdtsw(ig,l)(pplay(ig,l)/1.d4)*coeff_rad
1080	! zdtlw(ig,l)=zdtlw(ig,l)(pplay(ig,l)/1.d4)*coeff_rad
1081	! endif
1082	! enddo
1083	!enddo
1084
1085	! Option to call scheme once more for clear regions
1086	if(CLFvarying)then
1087
1088	! ---> PROBLEMS WITH ALLOCATED ARRAYS : temporary solution in callcorrk: do not deallocate if CLFvarying ...
1089	clearsky=.true.
1090	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
1091	albedo,albedo_equivalent1,emis,mu0,pplev,pplay,pt, &
1092	tsurf,fract,dist_star,aerosol,muvar, &
1093	zdtlw1,zdtsw1,fluxsurf_lw1,fluxsurf_sw1, &
1094	fluxsurfabs_sw1,fluxtop_lw1, &
1095	fluxabs_sw1,fluxtop_dn,OLR_nu1,OSR_nu1,GSR_nu1, &
1096	int_dtaui1,int_dtauv1, &
1097	tau_col1,cloudfrac,totcloudfrac, &
1098	clearsky,p_var,frac_var,firstcall,lastcall)
1099	clearsky = .false. ! just in case.
1100
1101	! Sum the fluxes and heating rates from cloudy/clear cases
1102	do ig=1,ngrid
1103	tf=totcloudfrac(ig)
1104	ntf=1.-tf
1105	fluxsurf_lw(ig) = ntffluxsurf_lw1(ig) + tffluxsurf_lw(ig)
1106	fluxsurf_sw(ig) = ntffluxsurf_sw1(ig) + tffluxsurf_sw(ig)
1107	albedo_equivalent(ig) = ntfalbedo_equivalent1(ig) + tfalbedo_equivalent(ig)
1108	fluxsurfabs_sw(ig) = ntffluxsurfabs_sw1(ig) + tffluxsurfabs_sw(ig)
1109	fluxtop_lw(ig) = ntffluxtop_lw1(ig) + tffluxtop_lw(ig)
1110	fluxabs_sw(ig) = ntffluxabs_sw1(ig) + tffluxabs_sw(ig)
1111	tau_col(ig) = ntftau_col1(ig) + tftau_col(ig)
1112
1113	zdtlw(ig,1:nlayer) = ntfzdtlw1(ig,1:nlayer) + tfzdtlw(ig,1:nlayer)
1114	zdtsw(ig,1:nlayer) = ntfzdtsw1(ig,1:nlayer) + tfzdtsw(ig,1:nlayer)
1115
1116	OSR_nu(ig,1:L_NSPECTV) = ntfOSR_nu1(ig,1:L_NSPECTV) + tfOSR_nu(ig,1:L_NSPECTV)
1117	GSR_nu(ig,1:L_NSPECTV) = ntfGSR_nu1(ig,1:L_NSPECTV) + tfGSR_nu(ig,1:L_NSPECTV)
1118	OLR_nu(ig,1:L_NSPECTI) = ntfOLR_nu1(ig,1:L_NSPECTI) + tfOLR_nu(ig,1:L_NSPECTI)
1119	if (diagdtau) then
1120	int_dtauv(ig,:,1:L_NSPECTV) = ntfint_dtauv1(ig,:,1:L_NSPECTV) + tfint_dtauv(ig,:,1:L_NSPECTV)
1121	int_dtaui(ig,:,1:L_NSPECTI) = ntfint_dtaui1(ig,:,1:L_NSPECTI) + tfint_dtaui(ig,:,1:L_NSPECTI)
1122	endif
1123	enddo
1124
1125	endif ! end of CLFvarying.
1126
1127	if(ok_slab_ocean) then
1128	tsurf(:)=tsurf2(:)
1129	endif
1130
1131
1132	! Radiative flux from the sky absorbed by the surface (W.m-2).
1133	GSR=0.0
1134	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+fluxsurfabs_sw(1:ngrid)
1135	net_fluxsurf_lw(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
1136
1137	!if(noradsurf)then ! no lower surface; SW flux just disappears
1138	! GSR = SUM(fluxsurf_sw(1:ngrid)*cell_area(1:ngrid))/totarea
1139	! fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
1140	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
1141	!endif
1142
1143	! Net atmospheric radiative heating rate (K.s-1)
1144	dtrad(1:ngrid,1:nlayer)=zdtsw(1:ngrid,1:nlayer)+zdtlw(1:ngrid,1:nlayer)
1145
1146	! Late initialization of the Ice Spectral Albedo. We needed the visible bands to do that !
1147	if (firstcall .and. albedo_spectral_mode) then
1148	call spectral_albedo_calc(albedo_snow_SPECTV)
1149	endif
1150
1151	elseif(newtonian)then
1152
1153	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1154	! II.b Call Newtonian cooling scheme
1155	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1156	! call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
1157	call newtcool_MOCHA(ngrid,nlayer,coslon,coslat,pt,pplay,firstcall,lastcall,dtrad)
1158
1159	zdtsurf(1:ngrid) = +(pt(1:ngrid,1)-tsurf(1:ngrid))/ptimestep
1160	! e.g. surface becomes proxy for 1st atmospheric layer ?
1161	fluxrad_sky(1:ngrid) = 0. ! otherwise, not initialized!
1162
1163	else
1164
1165	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1166	! II.c Atmosphere has no radiative effect
1167	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1168	fluxtop_dn(1:ngrid) = fract(1:ngrid)mu0(1:ngrid)Fat1AU/dist_star**2
1169	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
1170	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
1171	endif
1172	fluxsurf_sw(1:ngrid) = fluxtop_dn(1:ngrid)
1173	print*,'------------WARNING---WARNING------------' ! by MT2015.
1174	print*,'You are in corrk=false mode, '
1175	print*,'and the surface albedo is taken equal to the first visible spectral value'
1176
1177	fluxsurfabs_sw(1:ngrid) = fluxtop_dn(1:ngrid)*(1.-albedo(1:ngrid,1))
1178	fluxrad_sky(1:ngrid) = fluxsurfabs_sw(1:ngrid)
1179	fluxtop_lw(1:ngrid) = emis(1:ngrid)sigmatsurf(1:ngrid)**4
1180
1181	dtrad(1:ngrid,1:nlayer)=0.0 ! no atmospheric radiative heating
1182
1183	endif ! end of corrk
1184
1185	endif ! of if(mod(icount-1,iradia).eq.0)
1186
1187
1188	! Transformation of the radiative tendencies
1189	! ------------------------------------------
1190
1191	zplanck(1:ngrid)=tsurf(1:ngrid)*tsurf(1:ngrid)
1192	zplanck(1:ngrid)=emis(1:ngrid)sigmazplanck(1:ngrid)*zplanck(1:ngrid)
1193	net_fluxsurf_lw(1:ngrid)=net_fluxsurf_lw(1:ngrid)-zplanck(1:ngrid)
1194	fluxrad(1:ngrid)=fluxrad_sky(1:ngrid)-zplanck(1:ngrid)
1195	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+dtrad(1:ngrid,1:nlayer)
1196
1197	! Test of energy conservation
1198	!----------------------------
1199	if(enertest)then
1200	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
1201	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
1202	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
1203	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
1204	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
1205	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
1206	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
1207	if (is_master) then
1208	print*,'---------------------------------------------------------------'
1209	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
1210	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
1211	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
1212	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
1213	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
1214	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
1215	endif
1216	endif ! end of 'enertest'
1217
1218	endif ! of if (callrad)
1219
1220
1221	! --------------------------------------------
1222	! III. Vertical diffusion (turbulent mixing) :
1223	! --------------------------------------------
1224
1225	if (calldifv) then
1226
1227	zflubid(1:ngrid)=fluxrad(1:ngrid)+fluxgrd(1:ngrid)
1228
1229	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
1230	if (UseTurbDiff) then
1231
1232	call turbdiff(ngrid,nlayer,nq,rnat, &
1233	ptimestep,capcal, &
1234	pplay,pplev,zzlay,zzlev,z0, &
1235	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
1236	pdt,pdq,zflubid, &
1237	zdudif,zdvdif,zdtdif,zdtsdif, &
1238	sensibFlux,q2,zdqdif,zdqevap,zdqsdif, &
1239	taux,tauy)
1240
1241	else
1242
1243	zdh(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1244
1245	call vdifc(ngrid,nlayer,nq,rnat,zpopsk, &
1246	ptimestep,capcal,lwrite, &
1247	pplay,pplev,zzlay,zzlev,z0, &
1248	pu,pv,zh,pq,tsurf,emis,qsurf, &
1249	zdh,pdq,zflubid, &
1250	zdudif,zdvdif,zdhdif,zdtsdif, &
1251	sensibFlux,q2,zdqdif,zdqsdif)
1252
1253	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1254	zdqevap(1:ngrid,1:nlayer)=0.
1255
1256	end if !end of 'UseTurbDiff'
1257
1258	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+zdtsdif(1:ngrid)
1259
1260	!!! this is always done, except for turbulence-resolving simulations
1261	if (.not. turb_resolved) then
1262	pdv(1:ngrid,1:nlayer)=pdv(1:ngrid,1:nlayer)+zdvdif(1:ngrid,1:nlayer)
1263	pdu(1:ngrid,1:nlayer)=pdu(1:ngrid,1:nlayer)+zdudif(1:ngrid,1:nlayer)
1264	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtdif(1:ngrid,1:nlayer)
1265	endif
1266
1267	if(ok_slab_ocean)then
1268	flux_sens_lat(1:ngrid)=(zdtsdif(1:ngrid)*capcal(1:ngrid)-fluxrad(1:ngrid))
1269	endif
1270
1271	if (tracer) then
1272	pdq(1:ngrid,1:nlayer,1:nq)=pdq(1:ngrid,1:nlayer,1:nq)+ zdqdif(1:ngrid,1:nlayer,1:nq)
1273	dqsurf(1:ngrid,1:nq)=dqsurf(1:ngrid,1:nq) + zdqsdif(1:ngrid,1:nq)
1274	end if ! of if (tracer)
1275
1276
1277	! test energy conservation
1278	!-------------------------
1279	if(enertest)then
1280
1281	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
1282	do ig = 1, ngrid
1283	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
1284	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
1285	enddo
1286
1287	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
1288	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
1289	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
1290	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
1291
1292	if (is_master) then
1293
1294	if (UseTurbDiff) then
1295	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1296	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
1297	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1298	else
1299	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1300	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
1301	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1302	end if
1303	endif ! end of 'is_master'
1304
1305	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
1306	endif ! end of 'enertest'
1307
1308
1309	! Test water conservation.
1310	if(watertest.and.water)then
1311
1312	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
1313	call planetwide_sumval(zdqsdif(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots_tmp)
1314	do ig = 1, ngrid
1315	vdifcncons(ig)=SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_vap))
1316	enddo
1317	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1318	call planetwide_sumval(zdqsdif(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
1319	dWtot = dWtot + dWtot_tmp
1320	dWtots = dWtots + dWtots_tmp
1321	do ig = 1, ngrid
1322	vdifcncons(ig)=vdifcncons(ig) + SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_ice))
1323	enddo
1324	call planetwide_maxval(vdifcncons(:),nconsMAX)
1325
1326	if (is_master) then
1327	print*,'---------------------------------------------------------------'
1328	print*,'In difv atmospheric water change =',dWtot,' kg m-2'
1329	print*,'In difv surface water change =',dWtots,' kg m-2'
1330	print*,'In difv non-cons factor =',dWtot+dWtots,' kg m-2'
1331	print*,'In difv MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
1332	endif
1333
1334	endif ! end of 'watertest'
1335	!-------------------------
1336
1337	else ! calldifv
1338
1339	if(.not.newtonian)then
1340
1341	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + (fluxrad(1:ngrid) + fluxgrd(1:ngrid))/capcal(1:ngrid)
1342
1343	endif
1344
1345	endif ! end of 'calldifv'
1346
1347
1348	!-------------------
1349	! IV. Convection :
1350	!-------------------
1351
1352	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
1353	! IV.a Thermal plume model :
1354	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
1355
1356	IF (calltherm) THEN
1357
1358	! AB: We need to evaporate ice before calling thermcell_main.
1359	IF (water) THEN
1360	CALL evap(ngrid,nlayer,nq,ptimestep,pt,pq,pdq,pdt,dqevap,dtevap,zqtherm,zttherm)
1361	!ALS24 adapats for generic tracer
1362	ELSEIF (generic_condensation .and. .not. water) THEN
1363	DO iq=1,nq
1364	CALL generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
1365	CALL evap_generic(ngrid,nlayer,nq,ptimestep,pt,pq,pdq,pdt,igcm_generic_vap, &
1366	igcm_generic_ice,dqevap,dtevap,zqtherm,zttherm)
1367	ENDDO
1368	ELSE
1369	zttherm(:,:) = pt(:,:) + pdt(:,:) * ptimestep
1370	zqtherm(:,:,:) = pq(:,:,:) + pdq(:,:,:) * ptimestep
1371	ENDIF
1372
1373	CALL thermcell_main(ngrid, nlayer, nq, ptimestep, firstcall, &
1374	pplay, pplev, pphi, zpopsk, &
1375	pu, pv, zttherm, zqtherm, &
1376	zdutherm, zdvtherm, zdttherm, zdqtherm, &
1377	fm, entr, detr, zw2, fraca)
1378
1379	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdutherm(1:ngrid,1:nlayer)
1380	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvtherm(1:ngrid,1:nlayer)
1381	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdttherm(1:ngrid,1:nlayer)
1382
1383	IF (tracer) THEN
1384	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqtherm(1:ngrid,1:nlayer,1:nq)
1385	ENDIF
1386
1387	ENDIF ! end of 'calltherm'
1388
1389	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1390	! IV.b Dry convective adjustment :
1391	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1392
1393	if(calladj) then
1394
1395	zdh(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1396	zduadj(1:ngrid,1:nlayer)=0.0
1397	zdvadj(1:ngrid,1:nlayer)=0.0
1398	zdhadj(1:ngrid,1:nlayer)=0.0
1399
1400
1401	call convadj(ngrid,nlayer,nq,ptimestep, &
1402	pplay,pplev,zpopsk, &
1403	pu,pv,zh,pq, &
1404	pdu,pdv,zdh,pdq, &
1405	zduadj,zdvadj,zdhadj, &
1406	zdqadj)
1407
1408	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zduadj(1:ngrid,1:nlayer)
1409	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvadj(1:ngrid,1:nlayer)
1410	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
1411	zdtadj(1:ngrid,1:nlayer) = zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1412
1413	if(tracer) then
1414	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqadj(1:ngrid,1:nlayer,1:nq)
1415	end if
1416
1417	! Test energy conservation
1418	if(enertest)then
1419	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
1420	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
1421	endif
1422
1423	! Test water conservation
1424	if(watertest)then
1425	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
1426	do ig = 1, ngrid
1427	cadjncons(ig)=SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_vap))
1428	enddo
1429	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1430	dWtot = dWtot + dWtot_tmp
1431	do ig = 1, ngrid
1432	cadjncons(ig)=cadjncons(ig) + SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_ice))
1433	enddo
1434	call planetwide_maxval(cadjncons(:),nconsMAX)
1435
1436	if (is_master) then
1437	print*,'In convadj atmospheric water change =',dWtot,' kg m-2'
1438	print*,'In convadj MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
1439	endif
1440
1441	endif ! end of 'watertest'
1442
1443	endif ! end of 'calladj'
1444	!----------------------------------------------
1445	! Non orographic Gravity Waves:
1446	!---------------------------------------------
1447	IF (calllott_nonoro) THEN
1448
1449	CALL nonoro_gwd_ran(ngrid,nlayer,ptimestep, &
1450	cpnew, rnew, &
1451	pplay, &
1452	zmax_th, &! max altitude reached by thermals (m)
1453	pt, pu, pv, &
1454	pdt, pdu, pdv, &
1455	zustrhi,zvstrhi, &
1456	d_t_hin, d_u_hin, d_v_hin)
1457
1458	! Update tendencies
1459	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) &
1460	+ d_t_hin(1:ngrid,1:nlayer)
1461	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) &
1462	+ d_u_hin(1:ngrid,1:nlayer)
1463	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) &
1464	+ d_v_hin(1:ngrid,1:nlayer)
1465	print*,'du_nonoro: max ', maxval(d_u_hin), 'min ', minval(d_u_hin)
1466	print*,'dv_nonoro: max ', maxval(d_v_hin), 'min ', minval(d_v_hin)
1467
1468	ENDIF ! of IF (calllott_nonoro)
1469
1470
1471
1472	!-----------------------------------------------
1473	! V. Carbon dioxide condensation-sublimation :
1474	!-----------------------------------------------
1475
1476	if (co2cond) then
1477
1478	if (.not.tracer) then
1479	print*,'We need a CO2 ice tracer to condense CO2'
1480	call abort
1481	endif
1482	call condense_co2(ngrid,nlayer,nq,ptimestep, &
1483	capcal,pplay,pplev,tsurf,pt, &
1484	pdt,zdtsurf,pq,pdq, &
1485	qsurf,zdqsurfc,albedo,emis, &
1486	albedo_bareground,albedo_co2_ice_SPECTV, &
1487	zdtc,zdtsurfc,pdpsrf,zdqc)
1488
1489	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtc(1:ngrid,1:nlayer)
1490	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfc(1:ngrid)
1491
1492	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+ zdqc(1:ngrid,1:nlayer,1:nq)
1493	dqsurf(1:ngrid,igcm_co2_ice) = dqsurf(1:ngrid,igcm_co2_ice) + zdqsurfc(1:ngrid)
1494
1495
1496	! test energy conservation
1497	if(enertest)then
1498	call planetwide_sumval(cppmassarea(:,:)zdtc(:,:)/totarea_planet,dEtot)
1499	call planetwide_sumval(capcal(:)zdtsurfc(:)cell_area(:)/totarea_planet,dEtots)
1500	if (is_master) then
1501	print*,'In co2cloud atmospheric energy change =',dEtot,' W m-2'
1502	print*,'In co2cloud surface energy change =',dEtots,' W m-2'
1503	endif
1504	endif
1505
1506	endif ! end of 'co2cond'
1507
1508
1509	!---------------------------------------------
1510	! VI. Specific parameterizations for tracers
1511	!---------------------------------------------
1512
1513	if (tracer) then
1514
1515	! -----------------------------------------------------
1516	! VI.0. Volcanoes injecting tracers in the atmosphere
1517	! -----------------------------------------------------
1518	if (callvolcano) then
1519	call volcano(ngrid,nlayer,pplev,pu,pv,pt,zdqvolc,nq,massarea,&
1520	zday,ptimestep)
1521	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + &
1522	zdqvolc(1:ngrid,1:nlayer,1:nq)
1523	endif
1524
1525	! ---------------------
1526	! VI.1. Water and ice
1527	! ---------------------
1528	if (water) then
1529
1530	! Water ice condensation in the atmosphere
1531	if(watercond.and.(RLVTT.gt.1.e-8))then
1532
1533	if ((.not.calltherm).and.moistadjustment) then
1534	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
1535	dtmoist(1:ngrid,1:nlayer)=0.
1536
1537	! Moist Convective Adjustment.
1538	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1539
1540	call moistadj(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
1541
1542	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
1543	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap)
1544	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
1545	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_ice)
1546	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
1547
1548	! Test energy conservation.
1549	if(enertest)then
1550	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
1551	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
1552	call planetwide_minval(dtmoist(:,:),dtmoist_min)
1553	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
1554
1555	do ig=1,ngrid
1556	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
1557	enddo
1558
1559	if (is_master) then
1560	print*,'In moistadj atmospheric energy change =',dEtot,' W m-2'
1561	print,'In moistadj MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
1562	print,'In moistadj MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
1563	endif
1564
1565	call planetwide_sumval(massarea(:,:)dqmoist(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
1566	massarea(:,:)dqmoist(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1567	if (is_master) print*,'In moistadj atmospheric water change =',dWtot,' kg m-2'
1568
1569	endif ! end of 'enertest'
1570	else
1571	! rneb_man, dqmoist are output of moistadj, but used later on
1572	! so set them to zero if moistadj is not called
1573	rneb_man(:,:)=0
1574	dqmoist(:,:,:)=0
1575	endif ! end of '(.not.calltherm).and.moistadjustment'
1576
1577	! Large scale condensation/evaporation.
1578	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1579	call largescale(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pq,pdt,pdq,dtlscale,dqvaplscale,dqcldlscale,rneb_lsc)
1580
1581	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtlscale(1:ngrid,1:nlayer)
1582	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap)+dqvaplscale(1:ngrid,1:nlayer)
1583	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice)+dqcldlscale(1:ngrid,1:nlayer)
1584
1585	! Test energy conservation.
1586	if(enertest)then
1587	lscaledEz(:,:) = cppmass(:,:)dtlscale(:,:)
1588	do ig=1,ngrid
1589	lscaledE(ig) = cppSUM(mass(:,:)dtlscale(:,:))
1590	enddo
1591	call planetwide_sumval(cppmassarea(:,:)dtlscale(:,:)/totarea_planet,dEtot)
1592
1593	if (is_master) print*,'In largescale atmospheric energy change =',dEtot,' W m-2'
1594
1595	! Test water conservation.
1596	call planetwide_sumval(massarea(:,:)dqvaplscale(:,:)ptimestep/totarea_planet+ &
1597	SUM(massarea(:,:)dqcldlscale(:,:))ptimestep/totarea_planet,dWtot)
1598
1599	if (is_master) print*,'In largescale atmospheric water change =',dWtot,' kg m-2'
1600	endif ! end of 'enertest'
1601
1602	! Compute cloud fraction.
1603	do l = 1, nlayer
1604	do ig=1,ngrid
1605	cloudfrac(ig,l)=MAX(rneb_lsc(ig,l),rneb_man(ig,l))
1606	enddo
1607	enddo
1608
1609	endif ! end of 'watercond'
1610
1611	! Water ice / liquid precipitation.
1612	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1613	zdqrain(1:ngrid,1:nlayer,1:nq) = 0.0 !JL18 need to do that everytimestep if mass redis is on.
1614
1615	if(waterrain)then
1616
1617	zdqsrain(1:ngrid) = 0.0
1618	zdqssnow(1:ngrid) = 0.0
1619
1620	call rain(ngrid,nlayer,nq,ptimestep,pplev,pplay,pphi,pt,pdt,pq,pdq, &
1621	zdtrain,zdqrain,zdqsrain,zdqssnow,reevap_precip,cloudfrac)
1622
1623	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
1624	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
1625	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
1626	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
1627	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain(1:ngrid,1:nlayer)
1628
1629	dqsurf(1:ngrid,igcm_h2o_vap) = dqsurf(1:ngrid,igcm_h2o_vap)+zdqsrain(1:ngrid)
1630	dqsurf(1:ngrid,igcm_h2o_ice) = dqsurf(1:ngrid,igcm_h2o_ice)+zdqssnow(1:ngrid)
1631
1632	! Test energy conservation.
1633	if(enertest)then
1634
1635	call planetwide_sumval(cppmassarea(:,:)zdtrain(:,:)/totarea_planet,dEtot)
1636	if (is_master) print*,'In rain atmospheric T energy change =',dEtot,' W m-2'
1637	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
1638	call planetwide_sumval(cell_area(:)zdqssnow(:)/totarea_planetRLVTT/cpp,dItot)
1639	dItot = dItot + dItot_tmp
1640	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dVtot_tmp)
1641	call planetwide_sumval(cell_area(:)zdqsrain(:)/totarea_planetRLVTT/cpp,dVtot)
1642	dVtot = dVtot + dVtot_tmp
1643	dEtot = dItot + dVtot
1644
1645	if (is_master) then
1646	print*,'In rain dItot =',dItot,' W m-2'
1647	print*,'In rain dVtot =',dVtot,' W m-2'
1648	print*,'In rain atmospheric L energy change =',dEtot,' W m-2'
1649	endif
1650
1651	! Test water conservation
1652	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
1653	massarea(:,:)zdqrain(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1654	call planetwide_sumval((zdqsrain(:)+zdqssnow(:))cell_area(:)ptimestep/totarea_planet,dWtots)
1655
1656	if (is_master) then
1657	print*,'In rain atmospheric water change =',dWtot,' kg m-2'
1658	print*,'In rain surface water change =',dWtots,' kg m-2'
1659	print*,'In rain non-cons factor =',dWtot+dWtots,' kg m-2'
1660	endif
1661
1662	endif ! end of 'enertest'
1663
1664	end if ! enf of 'waterrain'
1665
1666	end if ! end of 'water'
1667
1668	! -------------------------
1669	! VI.2. Photochemistry
1670	! -------------------------
1671
1672	#ifndef MESOSCALE
1673	IF (photochem) then
1674
1675	DO ig=1,ngrid
1676	array_zero1(ig)=0.0
1677	DO l=1,nlayer
1678	array_zero2(ig,l)=0.
1679	ENDDO
1680	ENDDO
1681
1682	call calchim_asis(ngrid,nlayer,nq, &
1683	ptimestep,pplay,pplev,pt,pdt,dist_star,mu0, &
1684	fract,zzlev,zzlay,zday,pq,pdq,zdqchim,zdqschim, &
1685	array_zero1,array_zero1, &
1686	pu,pdu,pv,pdv,array_zero2,array_zero2,icount,zdtchim)
1687
1688	! increment values of tracers:
1689	iesp = 0
1690	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
1691	! tracers is zero anyways
1692	! September 2020: flag is_chim to increment only on chemical species
1693	IF (is_chim(iq)==1) THEN
1694	iesp = iesp + 1
1695	DO l=1,nlayer
1696	DO ig=1,ngrid
1697	pdq(ig,l,iq)=pdq(ig,l,iq)+zdqchim(ig,l,iesp)
1698	ENDDO
1699	ENDDO
1700	ENDIF
1701	ENDDO ! of DO iq=1,nq
1702
1703
1704	! increment surface values of tracers:
1705	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
1706	! tracers is zero anyways
1707	DO ig=1,ngrid
1708	! dqsurf(ig,iq)=dqsurf(ig,iq)+zdqschim(ig,iq)
1709	ENDDO
1710	ENDDO ! of DO iq=1,nq
1711
1712	! increment values of temperature:
1713	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtchim(1:ngrid,1:nlayer)
1714
1715	END IF ! of IF (photochem)
1716	#endif
1717
1718
1719	! ------------------------------------------
1720	! VI.3.a Generic Condensable Species (GCS)
1721	! ------------------------------------------
1722
1723	if (generic_condensation) then
1724	if ((.not.water).and.(.not.calltherm).and.moistadjustment_generic) then
1725	write(,) "moist adjustment for GCS"
1726	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
1727	dtmoist(1:ngrid,1:nlayer)=0.
1728
1729	! Moist Convective Adjustment.
1730	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1731	call moistadj_generic(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
1732
1733	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
1734	+ dqmoist(1:ngrid,1:nlayer,1:nq)
1735	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
1736
1737	! Test energy conservation.
1738	if(enertest)then
1739	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
1740	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
1741	call planetwide_minval(dtmoist(:,:),dtmoist_min)
1742	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
1743
1744	do ig=1,ngrid
1745	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
1746	enddo
1747
1748	if (is_master) then
1749	print*,'In moistadj_generic atmospheric energy change =',dEtot,' W m-2'
1750	print,'In moistadj_generic MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
1751	print,'In moistadj_generic MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
1752	endif
1753
1754	! igcm_generic_vap & igcm_generic_ice are not declared below
1755	call planetwide_sumval(massarea(:,:)dqmoist(:,:,1)ptimestep/totarea_planet+ &
1756	massarea(:,:)dqmoist(:,:,2)ptimestep/totarea_planet,dWtot)
1757	if (is_master) print*,'In moistadj_generic atmospheric GCS change =',dWtot,' kg m-2'
1758
1759	endif ! end of 'enertest'
1760	else
1761	! rneb_man, dqmoist are output of moistadj, but used later on
1762	! so set them to zero if moistadj is not called
1763	rneb_man(:,:)=0
1764	dqmoist(:,:,:)=0
1765	endif ! end of '(.not.calltherm).and.moistadjustment_generic'
1766
1767	call condensation_generic(ngrid,nlayer,nq,ptimestep,pplev,pplay, &
1768	pt,pq,pdt,pdq,dt_generic_condensation, &
1769	dqvaplscale_generic,dqcldlscale_generic,rneb_generic)
1770	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dt_generic_condensation(1:ngrid,1:nlayer)
1771	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+dqvaplscale_generic(1:ngrid,1:nlayer,1:nq)
1772	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+dqcldlscale_generic(1:ngrid,1:nlayer,1:nq)
1773
1774	if(enertest)then
1775	do ig=1,ngrid
1776	genericconddE(ig) = cppSUM(mass(:,:)dt_generic_condensation(:,:))
1777	enddo
1778
1779	call planetwide_sumval(cppmassarea(:,:)dt_generic_condensation(:,:)/totarea_planet,dEtot)
1780
1781	if (is_master) print*,'In generic condensation atmospheric energy change =',dEtot,' W m-2'
1782	end if
1783
1784	if (.not. water) then
1785	! Compute GCS (Generic Condensable Specie) cloud fraction. For now we can not have both water cloud fraction and GCS cloud fraction
1786	! Water is the priority
1787	! If you have set water and generic_condensation, then cloudfrac will be water cloudfrac
1788	!
1789	! If you have set generic_condensation (and not water) and you have set several GCS
1790	! then cloudfrac will be only the cloudfrac of the last generic tracer
1791	! (Because it is rewritten every tracer in the loop)
1792	!
1793	! Maybe one should create a cloudfrac_generic(ngrid,nlayer,nq) with 3 dimensions, the last one for tracers
1794
1795	! Let's loop on tracers
1796	cloudfrac(:,:)=0.0
1797	do iq=1,nq
1798	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
1799	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
1800	do l = 1, nlayer
1801	do ig=1,ngrid
1802	cloudfrac(ig,l)=rneb_generic(ig,l,iq)
1803	enddo
1804	enddo
1805	endif
1806	end do ! do iq=1,nq loop on tracers
1807	endif ! .not. water
1808
1809	endif !generic_condensation
1810
1811	!Generic Rain
1812
1813	if (generic_rain) then
1814
1815	zdqsrain_generic(1:ngrid,1:nq) = 0.0
1816	zdqssnow_generic(1:ngrid,1:nq) = 0.0
1817
1818	call rain_generic(ngrid,nlayer,nq,ptimestep,pplev,pplay,pphi,pt,pdt,pq,pdq, &
1819	zdtrain_generic,dq_rain_generic_vap,dq_rain_generic_cld, &
1820	zdqsrain_generic,zdqssnow_generic,reevap_precip_generic,cloudfrac)
1821
1822	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
1823	+ dq_rain_generic_vap(1:ngrid,1:nlayer,1:nq)
1824	! only the parts with indexes of generic vapor tracers are filled in dq_rain_generic_vap, other parts are 0.
1825	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
1826	+ dq_rain_generic_cld(1:ngrid,1:nlayer,1:nq)
1827	! only the parts with indexes of generic ice(cloud) tracers are filled in dq_rain_generic_cld, other parts are 0.
1828
1829	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain_generic(1:ngrid,1:nlayer)
1830
1831	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq)+zdqsrain_generic(1:ngrid,1:nq)
1832
1833	! Test energy conservation.
1834	if(enertest)then
1835
1836	call planetwide_sumval(cppmassarea(:,:)zdtrain_generic(:,:)/totarea_planet,dEtot)
1837	if (is_master) print*,'In rain_generic atmospheric T energy change =',dEtot,' W m-2'
1838
1839	! Test conservationfor each generic condensable specie (GCS) tracer
1840
1841	! Let's loop on tracers
1842
1843	do iq=1,nq
1844
1845	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
1846
1847	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
1848
1849	call planetwide_sumval(massarea(:,:)dq_rain_generic_cld(:,:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
1850	call planetwide_sumval(cell_area(:)zdqssnow_generic(:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dItot)
1851	dItot = dItot + dItot_tmp
1852	call planetwide_sumval(massarea(:,:)dq_rain_generic_vap(:,:,igcm_generic_vap)/totarea_planetRLVTT/cpp,dVtot_tmp)
1853	call planetwide_sumval(cell_area(:)zdqsrain_generic(:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dVtot)
1854	dVtot = dVtot + dVtot_tmp
1855	dEtot = dItot + dVtot
1856
1857	if (is_master) then
1858	print*,'In rain_generic dItot =',dItot,' W m-2'
1859	print*,'In rain_generic dVtot =',dVtot,' W m-2'
1860	print*,'In rain_generic atmospheric L energy change =',dEtot,' W m-2'
1861	endif
1862
1863	call planetwide_sumval(massarea(:,:)dq_rain_generic_vap(:,:,igcm_generic_vap)ptimestep/totarea_planet+ &
1864	massarea(:,:)dq_rain_generic_cld(:,:,igcm_generic_ice)ptimestep/totarea_planet,dWtot)
1865	call planetwide_sumval((zdqsrain_generic(:,igcm_generic_ice)+zdqssnow_generic(:,igcm_generic_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
1866
1867	if (is_master) then
1868	print*,'In rain_generic atmospheric generic tracer change =',dWtot,' kg m-2'
1869	print*,'In rain_generic surface generic tracer change =',dWtots,' kg m-2'
1870	print*,'In rain_generic non-cons factor =',dWtot+dWtots,' kg m-2'
1871	endif
1872
1873	endif
1874
1875	end do ! do iq=1,nq loop on tracers
1876
1877	endif ! end of 'enertest'
1878
1879	endif !generic_rain
1880
1881	! -------------------------
1882	! VI.3.b. Sedimentation.
1883	! -------------------------
1884	if (sedimentation) then
1885
1886	zdqsed(1:ngrid,1:nlayer,1:nq) = 0.0
1887	zdqssed(1:ngrid,1:nq) = 0.0
1888
1889	if(watertest)then
1890
1891	iq=igcm_h2o_ice
1892	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
1893	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
1894	if (is_master) then
1895	print*,'Before sedim pq =',dWtot,' kg m-2'
1896	print*,'Before sedim pdq =',dWtots,' kg m-2'
1897	endif
1898	endif
1899
1900	call callsedim(ngrid,nlayer,ptimestep, &
1901	pplev,zzlev,pt,pdt,pq,pdq, &
1902	zdqsed,zdqssed,nq)
1903
1904	if(watertest)then
1905	iq=igcm_h2o_ice
1906	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
1907	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
1908	if (is_master) then
1909	print*,'After sedim pq =',dWtot,' kg m-2'
1910	print*,'After sedim pdq =',dWtots,' kg m-2'
1911	endif
1912	endif
1913
1914	! Whether it falls as rain or snow depends only on the surface temperature
1915	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqsed(1:ngrid,1:nlayer,1:nq)
1916	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqssed(1:ngrid,1:nq)
1917
1918	! Test water conservation
1919	if(watertest)then
1920	call planetwide_sumval(massarea(:,:)(zdqsed(:,:,igcm_h2o_vap)+zdqsed(:,:,igcm_h2o_ice))ptimestep/totarea_planet,dWtot)
1921	call planetwide_sumval((zdqssed(:,igcm_h2o_vap)+zdqssed(:,igcm_h2o_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
1922	if (is_master) then
1923	print*,'In sedim atmospheric ice change =',dWtot,' kg m-2'
1924	print*,'In sedim surface ice change =',dWtots,' kg m-2'
1925	print*,'In sedim non-cons factor =',dWtot+dWtots,' kg m-2'
1926	endif
1927	endif
1928
1929	end if ! end of 'sedimentation'
1930
1931
1932	! ---------------
1933	! VI.4. Updates
1934	! ---------------
1935
1936	! Updating Atmospheric Mass and Tracers budgets.
1937	if(mass_redistrib) then
1938
1939	zdmassmr(1:ngrid,1:nlayer) = mass(1:ngrid,1:nlayer) * &
1940	( zdqevap(1:ngrid,1:nlayer) &
1941	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap) &
1942	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap) &
1943	+ dqvaplscale(1:ngrid,1:nlayer) )
1944
1945	do ig = 1, ngrid
1946	zdmassmr_col(ig)=SUM(zdmassmr(ig,1:nlayer))
1947	enddo
1948
1949	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
1950	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
1951	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
1952
1953	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
1954	rnat,capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
1955	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
1956	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
1957
1958	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqmr(1:ngrid,1:nlayer,1:nq)
1959	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqsurfmr(1:ngrid,1:nq)
1960	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdtmr(1:ngrid,1:nlayer)
1961	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdumr(1:ngrid,1:nlayer)
1962	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvmr(1:ngrid,1:nlayer)
1963	pdpsrf(1:ngrid) = pdpsrf(1:ngrid) + zdpsrfmr(1:ngrid)
1964	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfmr(1:ngrid)
1965
1966	endif
1967
1968
1969	! ------------------
1970	! VI.5. Slab Ocean
1971	! ------------------
1972
1973	if (ok_slab_ocean)then
1974
1975	do ig=1,ngrid
1976	qsurfint(:,igcm_h2o_ice)=qsurf(:,igcm_h2o_ice)
1977	enddo
1978
1979	!! These two commented functions are from BC2014 (only kept for record)
1980	!!
1981	!! call ocean_slab_ice(ptimestep, &
1982	!! ngrid, knindex, tsea_ice, fluxrad, &
1983	!! zdqssnow, qsurf(:,igcm_h2o_ice), &
1984	!! - zdqsdif(:,igcm_h2o_vap), &
1985	!! flux_sens_lat,tsea_ice, pctsrf_sic, &
1986	!! taux,tauy,icount)
1987	!! call ocean_slab_get_vars(ngrid,tslab, &
1988	!! sea_ice, flux_o, &
1989	!! flux_g, dt_hdiff, &
1990	!! dt_ekman)
1991
1992	call ocean_slab_noice(icount, ptimestep, knon, knindex, &
1993	zdqssnow, tsea_ice, &
1994	fluxrad, qsurf(:,igcm_h2o_ice), flux_sens_lat, &
1995	tsea_ice, taux, tauy, zmasq)
1996
1997	call ocean_slab_ice(icount, ptimestep, knon, knindex, &
1998	zdqssnow, tsea_ice, &
1999	fluxrad, qsurf(:,igcm_h2o_ice), flux_sens_lat, &
2000	tsea_ice, -zdqsdif(:,igcm_h2o_vap), taux, tauy, zmasq)
2001
2002	call ocean_slab_frac(pctsrf_sic, zmasq)
2003
2004	call ocean_slab_get_vars(ngrid, tslab, tice, sea_ice, flux_g, &
2005	dt_hdiff, dt_ekman, dt_gm)
2006
2007	!!! call ocean_slab_get_vars(ngrid, tslab, tsea_ice, sea_ice, flux_g, &
2008	!!! dt_hdiff, dt_ekman, dt_gm)
2009
2010	!! sea_ice defines the sea ice thickness in kg/m2
2011	!! pctsrf_sic defines the percentage of the oceanic grid that is covered by sea ice (between 0 and almost 1)
2012	!! qsurf(:,igcm_h2o_ice) defines the amount of snow that accumulates on top of the sea ice (in kg/m2) ; note that the snow fraction depends on the amount of snow.
2013	!! therefore, beware that qsurf(:,igcm_h2o_ice) has its own meaning for oceanic grid points (when ok_slab_ocean activated)
2014
2015
2016	do ig=1,ngrid
2017	if (nint(rnat(ig)).eq.1)then
2018	tslab(ig,1) = 0.
2019	tslab(ig,2) = 0.
2020	tsea_ice(ig) = 0.
2021	! tice(ig) = 0.
2022	sea_ice(ig) = 0.
2023	pctsrf_sic(ig) = 0.
2024	qsurf(ig,igcm_h2o_ice) = qsurfint(ig,igcm_h2o_ice)
2025	endif
2026	enddo
2027
2028	endif ! end of 'ok_slab_ocean'
2029
2030
2031	! -----------------------------
2032	! VI.6. Surface Tracer Update
2033	! -----------------------------
2034
2035	if(hydrology)then
2036
2037	call hydrol(ngrid,nq,ptimestep,rnat,tsurf,qsurf,dqsurf,dqs_hyd, &
2038	capcal,albedo,albedo_bareground, &
2039	albedo_snow_SPECTV,albedo_co2_ice_SPECTV, &
2040	mu0,zdtsurf,zdtsurf_hyd,hice,pctsrf_sic, &
2041	sea_ice)
2042
2043	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurf_hyd(1:ngrid)
2044	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + dqs_hyd(1:ngrid,1:nq)
2045
2046
2047	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
2048
2049	! Test energy conservation
2050	if(enertest)then
2051	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf_hyd(:)/totarea_planet,dEtots)
2052	if (is_master) print*,'In hydrol surface energy change =',dEtots,' W m-2'
2053	endif
2054
2055	! test water conservation
2056	if(watertest)then
2057	call planetwide_sumval(dqs_hyd(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
2058	if (is_master) print*,'In hydrol surface ice change =',dWtots,' kg m-2'
2059	call planetwide_sumval(dqs_hyd(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots)
2060	if (is_master) then
2061	print*,'In hydrol surface water change =',dWtots,' kg m-2'
2062	print*,'---------------------------------------------------------------'
2063	endif
2064	endif
2065
2066	else ! of if (hydrology)
2067
2068	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
2069
2070	end if ! of if (hydrology)
2071
2072	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
2073	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
2074	qsurf_hist(:,:) = qsurf(:,:)
2075
2076	! -----------------------------
2077	! VI.7. Radioactive Tracers
2078	! -----------------------------
2079
2080	call radioactive_tracers(ngrid,nlayer,nq,ptimestep,pq,zdqradio)
2081	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqradio(1:ngrid,1:nlayer,1:nq)
2082
2083	endif! end of if 'tracer'
2084
2085
2086	!------------------------------------------------
2087	! VII. Surface and sub-surface soil temperature
2088	!------------------------------------------------
2089
2090
2091	! Increment surface temperature
2092	if(ok_slab_ocean)then
2093	do ig=1,ngrid
2094	if (nint(rnat(ig)).eq.0)then
2095	zdtsurf(ig)= (tslab(ig,1) &
2096	+ pctsrf_sic(ig)*(tsea_ice(ig)-tslab(ig,1))-tsurf(ig))/ptimestep
2097	endif
2098	tsurf(ig)=tsurf(ig)+ptimestep*zdtsurf(ig)
2099	enddo
2100
2101	else
2102	tsurf(1:ngrid)=tsurf(1:ngrid)+ptimestep*zdtsurf(1:ngrid)
2103	endif ! end of 'ok_slab_ocean'
2104
2105
2106	! Compute soil temperatures and subsurface heat flux.
2107	if (callsoil) then
2108	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
2109	ptimestep,tsurf,tsoil,capcal,fluxgrd)
2110	endif
2111
2112
2113	if (ok_slab_ocean) then
2114
2115	do ig=1,ngrid
2116
2117	fluxgrdocean(ig)=fluxgrd(ig)
2118	if (nint(rnat(ig)).eq.0) then
2119	capcal(ig)=capcalocean
2120	fluxgrd(ig)=0.
2121	!! fluxgrdocean(ig)=pctsrf_sic(ig)flux_g(ig)+(1-pctsrf_sic(ig))(dt_hdiff(ig,1)+dt_ekman(ig,1))
2122	! Dividing by cell area to have flux in W/m2
2123	fluxgrdocean(ig)=flux_g(ig)+(1-pctsrf_sic(ig))*(dt_hdiff(ig,1)+dt_ekman(ig,1)+dt_gm(ig,1))/cell_area(ig)
2124	! fluxgrdocean(ig)=(flux_g(ig)-fluxabs_sw(ig))+(1-pctsrf_sic(ig))*(dt_hdiff(ig,1)+dt_ekman(ig,1)+dt_gm(ig,1))/cell_area(ig)
2125	do iq=1,nsoilmx
2126	tsoil(ig,iq)=tsurf(ig)
2127	enddo
2128	if (pctsrf_sic(ig).gt.0.5) then
2129	capcal(ig)=capcalseaice
2130	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
2131	capcal(ig)=capcalsno
2132	endif
2133	endif
2134	endif
2135
2136	enddo
2137
2138	endif !end of 'ok_slab_ocean'
2139
2140
2141	! Test energy conservation
2142	if(enertest)then
2143	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
2144	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
2145	endif
2146
2147
2148	!---------------------------------------------------
2149	! VIII. Perform diagnostics and write output files
2150	!---------------------------------------------------
2151
2152	! Note : For output only: the actual model integration is performed in the dynamics.
2153
2154
2155
2156	! Temperature, zonal and meridional winds.
2157	zt(1:ngrid,1:nlayer) = pt(1:ngrid,1:nlayer) + pdt(1:ngrid,1:nlayer)*ptimestep
2158	zu(1:ngrid,1:nlayer) = pu(1:ngrid,1:nlayer) + pdu(1:ngrid,1:nlayer)*ptimestep
2159	zv(1:ngrid,1:nlayer) = pv(1:ngrid,1:nlayer) + pdv(1:ngrid,1:nlayer)*ptimestep
2160
2161	! Recast thermal plume vertical velocity array for outputs
2162	IF (calltherm) THEN
2163	DO ig=1,ngrid
2164	DO l=1,nlayer
2165	zw2_bis(ig,l) = zw2(ig,l)
2166	fm_bis(ig,l) = fm(ig,l)
2167	ENDDO
2168	ENDDO
2169	ENDIF
2170
2171	! Diagnostic.
2172	zdtdyn(1:ngrid,1:nlayer) = (pt(1:ngrid,1:nlayer)-ztprevious(1:ngrid,1:nlayer)) / ptimestep
2173	ztprevious(1:ngrid,1:nlayer) = zt(1:ngrid,1:nlayer)
2174
2175	zdudyn(1:ngrid,1:nlayer) = (pu(1:ngrid,1:nlayer)-zuprevious(1:ngrid,1:nlayer)) / ptimestep
2176	zuprevious(1:ngrid,1:nlayer) = zu(1:ngrid,1:nlayer)
2177
2178	if(firstcall)then
2179	zdtdyn(1:ngrid,1:nlayer)=0.0
2180	zdudyn(1:ngrid,1:nlayer)=0.0
2181	endif
2182
2183	! Dynamical heating diagnostic.
2184	do ig=1,ngrid
2185	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
2186	enddo
2187
2188	! Tracers.
2189	zq(1:ngrid,1:nlayer,1:nq) = pq(1:ngrid,1:nlayer,1:nq) + pdq(1:ngrid,1:nlayer,1:nq)*ptimestep
2190
2191	! Surface pressure.
2192	ps(1:ngrid) = pplev(1:ngrid,1) + pdpsrf(1:ngrid)*ptimestep
2193
2194
2195
2196	! Surface and soil temperature information
2197	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
2198	call planetwide_minval(tsurf(:),Ts2)
2199	call planetwide_maxval(tsurf(:),Ts3)
2200	if(callsoil)then
2201	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
2202	if (is_master) then
2203	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
2204	print*,Ts1,Ts2,Ts3,TsS
2205	end if
2206	else
2207	if (is_master) then
2208	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
2209	print*,Ts1,Ts2,Ts3
2210	endif
2211	end if
2212
2213
2214	! Check the energy balance of the simulation during the run
2215	if(corrk)then
2216
2217	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
2218	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
2219	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
2220	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
2221	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
2222	do ig=1,ngrid
2223	if(fluxtop_dn(ig).lt.0.0)then
2224	print*,'fluxtop_dn has gone crazy'
2225	print*,'fluxtop_dn=',fluxtop_dn(ig)
2226	print*,'tau_col=',tau_col(ig)
2227	print*,'aerosol=',aerosol(ig,:,:)
2228	print*,'temp= ',pt(ig,:)
2229	print*,'pplay= ',pplay(ig,:)
2230	call abort
2231	endif
2232	end do
2233
2234	if(ngrid.eq.1)then
2235	DYN=0.0
2236	endif
2237
2238	if (is_master) then
2239	print*,' ISR ASR OLR GND DYN [W m^-2]'
2240	print*, ISR,ASR,OLR,GND,DYN
2241	endif
2242
2243	if(enertest .and. is_master)then
2244	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
2245	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
2246	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
2247	endif
2248
2249	if(meanOLR .and. is_master)then
2250	if((ngrid.gt.1) .or. (mod(icount-1,diagfi_output_rate).eq.0))then
2251	! to record global radiative balance
2252	open(92,file="rad_bal.out",form='formatted',position='append')
2253	write(92,*) zday,ISR,ASR,OLR
2254	close(92)
2255	open(93,file="tem_bal.out",form='formatted',position='append')
2256	if(callsoil)then
2257	write(93,*) zday,Ts1,Ts2,Ts3,TsS
2258	else
2259	write(93,*) zday,Ts1,Ts2,Ts3
2260	endif
2261	close(93)
2262	endif
2263	endif
2264
2265	endif ! end of 'corrk'
2266
2267
2268	! Diagnostic to test radiative-convective timescales in code.
2269	if(testradtimes)then
2270	open(38,file="tau_phys.out",form='formatted',position='append')
2271	ig=1
2272	do l=1,nlayer
2273	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
2274	enddo
2275	close(38)
2276	print*,'As testradtimes enabled,'
2277	print*,'exiting physics on first call'
2278	call abort
2279	endif
2280
2281
2282	! Compute column amounts (kg m-2) if tracers are enabled.
2283	if(tracer)then
2284	qcol(1:ngrid,1:nq)=0.0
2285	do iq=1,nq
2286	do ig=1,ngrid
2287	qcol(ig,iq) = SUM( zq(ig,1:nlayer,iq) * mass(ig,1:nlayer))
2288	enddo
2289	enddo
2290
2291	! Generalised for arbitrary aerosols now. By LK
2292	reffcol(1:ngrid,1:naerkind)=0.0
2293	if(co2cond.and.(iaero_co2.ne.0))then
2294	call co2_reffrad(ngrid,nlayer,nq,zq,reffrad(1,1,iaero_co2))
2295	do ig=1,ngrid
2296	reffcol(ig,iaero_co2) = SUM(zq(ig,1:nlayer,igcm_co2_ice)reffrad(ig,1:nlayer,iaero_co2)mass(ig,1:nlayer))
2297	enddo
2298	endif
2299	if(water.and.(iaero_h2o.ne.0))then
2300	call h2o_reffrad(ngrid,nlayer,zq(1,1,igcm_h2o_ice),zt, &
2301	reffrad(1,1,iaero_h2o),nueffrad(1,1,iaero_h2o))
2302	do ig=1,ngrid
2303	reffcol(ig,iaero_h2o) = SUM(zq(ig,1:nlayer,igcm_h2o_ice)reffrad(ig,1:nlayer,iaero_h2o)mass(ig,1:nlayer))
2304	enddo
2305	endif
2306
2307	endif ! end of 'tracer'
2308
2309
2310	! Test for water conservation.
2311	if(water)then
2312
2313	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_ice)/totarea_planet,icesrf)
2314	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_vap)/totarea_planet,liqsrf)
2315	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_ice)/totarea_planet,icecol)
2316	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_vap)/totarea_planet,vapcol)
2317
2318	h2otot = icesrf + liqsrf + icecol + vapcol
2319
2320	if (is_master) then
2321	print*,' Total water amount [kg m^-2]: ',h2otot
2322	print*,' Surface ice Surface liq. Atmos. con. Atmos. vap. [kg m^-2] '
2323	print*, icesrf,liqsrf,icecol,vapcol
2324	endif
2325
2326	if(meanOLR .and. is_master)then
2327	if((ngrid.gt.1) .or. (mod(icount-1,diagfi_output_rate).eq.0))then
2328	! to record global water balance
2329	open(98,file="h2o_bal.out",form='formatted',position='append')
2330	write(98,*) zday,icesrf,liqsrf,icecol,vapcol
2331	close(98)
2332	endif
2333	endif
2334
2335	endif
2336
2337
2338	! Calculate RH (Relative Humidity) for diagnostic.
2339	if(water)then
2340
2341	do l = 1, nlayer
2342	do ig=1,ngrid
2343	call Psat_water(zt(ig,l),pplay(ig,l),psat_tmp,qsat(ig,l))
2344	RH(ig,l) = zq(ig,l,igcm_h2o_vap) / qsat(ig,l)
2345	enddo
2346	enddo
2347
2348	! Compute maximum possible H2O column amount (100% saturation).
2349	do ig=1,ngrid
2350	H2Omaxcol(ig) = SUM( qsat(ig,:) * mass(ig,:))
2351	enddo
2352
2353	endif ! end of 'water'
2354
2355	! Calculate RH_generic (Generic Relative Humidity) for diagnostic.
2356	if(generic_condensation)then
2357	RH_generic(:,:,:)=0.0
2358	do iq=1,nq
2359
2360	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
2361
2362	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
2363
2364	do l = 1, nlayer
2365	do ig=1,ngrid
2366	call Psat_generic(zt(ig,l),pplay(ig,l),metallicity,psat_tmp_generic,qsat_generic(ig,l,iq))
2367	RH_generic(ig,l,iq) = zq(ig,l,igcm_generic_vap) / qsat_generic(ig,l,iq)
2368	enddo
2369	enddo
2370
2371	end if
2372
2373	end do ! iq=1,nq
2374
2375	endif ! end of 'generic_condensation'
2376
2377
2378	if (is_master) print,'--> Ls =',zls180./pi
2379
2380
2381	! -------------------------
2382	! IX. Thermosphere
2383	! -------------------------
2384	if (callthermos) then
2385	call conduction(ngrid,nlayer,nq,ptimestep,pplay,pplev, &
2386	pt,tsurf,zzlev,zzlay,muvar,pq,firstcall,zdtconduc)
2387	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtconduc(1:ngrid,1:nlayer)
2388	endif ! of if (callthermos)
2389
2390
2391	!----------------------------------------------------------------------
2392	! Writing NetCDF file "RESTARTFI" at the end of the run
2393	!----------------------------------------------------------------------
2394
2395	! Note: 'restartfi' is stored just before dynamics are stored
2396	! in 'restart'. Between now and the writting of 'restart',
2397	! there will have been the itau=itau+1 instruction and
2398	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
2399	! thus we store for time=time+dtvr
2400
2401
2402
2403	if(lastcall) then
2404	ztime_fin = ptime + (ptimestep/daysec)
2405
2406	#ifndef MESOSCALE
2407
2408	!if (ngrid.ne.1) then
2409	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
2410
2411	if (ok_slab_ocean) then
2412	! fetch "ocean variables" to ensure they are stored
2413	call ocean_slab_get_vars(ngrid, tslab, tice, sea_ice, flux_g, &
2414	dt_hdiff, dt_ekman, dt_gm)
2415	endif
2416
2417	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
2418	ptimestep,ztime_fin, &
2419	tsurf,tsoil,emis,albedo,q2,qsurf_hist, &
2420	cloudfrac,totcloudfrac,hice, &
2421	rnat,pctsrf_sic,tslab,tsea_ice,tice,sea_ice)
2422	!endif
2423	#endif
2424	if(ok_slab_ocean) then
2425	call ocean_slab_final!(tslab, seaice)
2426	end if
2427
2428	endif ! end of 'lastcall'
2429
2430
2431	! -----------------------------------------------------------------
2432	! WSTATS: Saving statistics
2433	! -----------------------------------------------------------------
2434	! ("stats" stores and accumulates key variables in file "stats.nc"
2435	! which can later be used to make the statistic files of the run:
2436	! if flag "callstats" from callphys.def is .true.)
2437
2438
2439	call wstats(ngrid,"ps","Surface pressure","Pa",2,ps)
2440	call wstats(ngrid,"tsurf","Surface temperature","K",2,tsurf)
2441	call wstats(ngrid,"fluxsurf_lw", &
2442	"Thermal IR radiative flux to surface","W.m-2",2, &
2443	fluxsurf_lw)
2444	call wstats(ngrid,"fluxtop_lw", &
2445	"Thermal IR radiative flux to space","W.m-2",2, &
2446	fluxtop_lw)
2447
2448	! call wstats(ngrid,"fluxsurf_sw", &
2449	! "Solar radiative flux to surface","W.m-2",2, &
2450	! fluxsurf_sw_tot)
2451	! call wstats(ngrid,"fluxtop_sw", &
2452	! "Solar radiative flux to space","W.m-2",2, &
2453	! fluxtop_sw_tot)
2454
2455
2456	call wstats(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
2457	call wstats(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
2458	call wstats(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
2459	!call wstats(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
2460	!call wstats(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
2461	call wstats(ngrid,"p","Pressure","Pa",3,pplay)
2462	call wstats(ngrid,"temp","Atmospheric temperature","K",3,zt)
2463	call wstats(ngrid,"u","Zonal (East-West) wind","m.s-1",3,zu)
2464	call wstats(ngrid,"v","Meridional (North-South) wind","m.s-1",3,zv)
2465	call wstats(ngrid,"w","Vertical (down-up) wind","m.s-1",3,pw)
2466	call wstats(ngrid,"q2","Boundary layer eddy kinetic energy","m2.s-2",3,q2)
2467
2468	if (tracer) then
2469	do iq=1,nq
2470	call wstats(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
2471	call wstats(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2472	'kg m^-2',2,qsurf(1,iq) )
2473	call wstats(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
2474	'kg m^-2',2,qcol(1,iq) )
2475
2476	! call wstats(ngrid,trim(noms(iq))//'_reff', &
2477	! trim(noms(iq))//'_reff', &
2478	! 'm',3,reffrad(1,1,iq))
2479
2480	end do
2481
2482	if (water) then
2483	vmr=zq(1:ngrid,1:nlayer,igcm_h2o_vap)*mugaz/mmol(igcm_h2o_vap)
2484	call wstats(ngrid,"vmr_h2ovapor", &
2485	"H2O vapour volume mixing ratio","mol/mol", &
2486	3,vmr)
2487	endif
2488
2489	endif ! end of 'tracer'
2490
2491	if(watercond.and.CLFvarying)then
2492	call wstats(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
2493	call wstats(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
2494	call wstats(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
2495	call wstats(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
2496	call wstats(ngrid,"RH","relative humidity"," ",3,RH)
2497	endif
2498
2499	if (ok_slab_ocean) then
2500	call wstats(ngrid,"dt_hdiff1","dt_hdiff1","W m-2",2,dt_hdiff(:,1))
2501	call wstats(ngrid,"dt_hdiff2","dt_hdiff2","W m-2",2,dt_hdiff(:,2))
2502	call wstats(ngrid,"dt_ekman1","dt_ekman1","W m-2",2,dt_ekman(:,1))
2503	call wstats(ngrid,"dt_ekman2","dt_ekman2","W m-2",2,dt_ekman(:,2))
2504	call wstats(ngrid,"dt_gm1","dt_gm1","W m-2",2,dt_gm(:,1))
2505	call wstats(ngrid,"dt_gm2","dt_gm2","W m-2",2,dt_gm(:,2))
2506	call wstats(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
2507	call wstats(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
2508	call wstats(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
2509	call wstats(ngrid,"tsea_ice","top layer temp, snow/ice","K",2,tsea_ice)
2510	! call wstats(ngrid,"tice","sea ice temperature","K",2,tice)
2511	call wstats(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
2512	call wstats(ngrid,"rnat","nature of the surface","",2,rnat)
2513	endif
2514
2515	if(lastcall.and.callstats) then
2516	write (,) "Writing stats..."
2517	call mkstats(ierr)
2518	endif
2519
2520
2521	#ifndef MESOSCALE
2522
2523	!-----------------------------------------------------------------------------------------------------
2524	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
2525	!
2526	! Note 1 : output with period "diagfi_output_rate", set in "run.def"
2527	!
2528	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
2529	! but its preferable to keep all the calls in one place ...
2530	!-----------------------------------------------------------------------------------------------------
2531
2532	call write_output("Ls","solar longitude","deg",zls*180./pi)
2533	call write_output("Lss","sub solar longitude","deg",zlss*180./pi)
2534	call write_output("RA","right ascension","deg",right_ascen*180./pi)
2535	call write_output("Declin","solar declination","deg",declin*180./pi)
2536	call write_output("dist_star","dist_star","AU",dist_star)
2537
2538	call write_output("tsurf","Surface temperature","K",tsurf)
2539	call write_output("ps","Surface pressure","Pa",ps)
2540	call write_output("emis","Emissivity","",emis)
2541	call write_output("temperature","temperature","K",zt)
2542	call write_output("teta","potential temperature","K",zh)
2543	call write_output("u","Zonal wind","m.s-1",zu)
2544	call write_output("v","Meridional wind","m.s-1",zv)
2545	call write_output("w","Vertical wind","m.s-1",pw)
2546	call write_output("p","Pressure","Pa",pplay)
2547	call write_output("omega","omega","Pa/s",omega)
2548
2549	! Subsurface temperatures
2550	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
2551
2552	! Oceanic layers
2553	if(ok_slab_ocean) then
2554	call write_output("pctsrf_sic","pct ice/sea","",pctsrf_sic)
2555	call write_output("tsea_ice","top layer temp, snow/ice","K",tsea_ice)
2556	! call write_output("tice","sea ice temperature","K",tice)
2557	call write_output("sea_ice","sea ice","kg/m2",sea_ice)
2558	call write_output("tslab1","tslab1","K",tslab(:,1))
2559	call write_output("tslab2","tslab2","K",tslab(:,2))
2560	call write_output("dt_hdiff1","dt_hdiff1","W m-2",dt_hdiff(:,1))
2561	call write_output("dt_hdiff2","dt_hdiff2","W m-2",dt_hdiff(:,2))
2562	call write_output("dt_ekman1","dt_ekman1","W m-2",dt_ekman(:,1))
2563	call write_output("dt_ekman2","dt_ekman2","W m-2",dt_ekman(:,2))
2564	call write_output("dt_gm1","dt_gm1","W m-2",dt_gm(:,1))
2565	call write_output("dt_gm2","dt_gm2","W m-2",dt_gm(:,2))
2566	call write_output("rnat","nature of the surface","",rnat)
2567	call write_output("sensibFlux","sensible heat flux","w.m^-2",sensibFlux)
2568	call write_output("latentFlux","latent heat flux","w.m^-2",zdqsdif(:,igcm_h2o_vap)*RLVTT)
2569	endif
2570
2571	! Thermal plume model
2572	if (calltherm) then
2573	call write_output('entr','Entrainment','kg m$^{-2}$ s$^{-1}$', entr)
2574	call write_output('detr','Detrainment','kg m$^{-2}$ s$^{-1}$', detr)
2575	call write_output('fm','Mass flux','kg m$^{-2}$ s$^{-1}$', fm_bis)
2576	call write_output('w_plm','Squared vertical velocity','m s$^{-1}$', zw2_bis)
2577	call write_output('fraca','Updraft fraction','', fraca)
2578	call write_output("zdttherm","dt due to plumes","K-1 s-1",zdttherm) !ALS24
2579	IF (tracer) THEN
2580	call write_output("zdqtherm","dq due to plumes, iq = 1","kg kg-1 s-1",&
2581	zdqtherm(1:ngrid,1:nlayer,1)) !ALS24
2582	call write_output("zdqtherm2","dq due to plumes; iq = 2","kg kg-1 s-1",&
2583	zdqtherm(1:ngrid,1:nlayer,2)) !ALS24
2584	ENDIF
2585	endif
2586
2587	! GW non-oro outputs
2588	if (calllott_nonoro) then
2589	call write_output("dugwno","GW non-oro dU","m/s2", d_u_hin)
2590	call write_output("dvgwno","GW non-oro dV","m/s2", d_v_hin)
2591	endif
2592
2593	! Total energy balance diagnostics
2594	if(callrad.and.(.not.newtonian))then
2595
2596	call write_output("ALB","Surface albedo"," ",albedo_equivalent)
2597	call write_output("ASR","absorbed stellar rad.","W m-2",fluxabs_sw)
2598	call write_output("ISR","incoming stellar rad.","W m-2",fluxtop_dn)
2599	call write_output("OLR","outgoing longwave rad.","W m-2",fluxtop_lw)
2600	call write_output("DYN","dynamical heat input","W m-2",fluxdyn)
2601	call write_output("shad","rings"," ", fract)
2602	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
2603	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
2604	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
2605	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
2606	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
2607	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
2608	! call writediagfi(ngrid,"netfluxsurflw","lw net surface flux","W m-2",2,net_fluxsurf_lw)
2609
2610	if(ok_slab_ocean) then
2611	call write_output("GND","heat flux from ground","W m-2",fluxgrdocean)
2612	else
2613	call write_output("GND","heat flux from ground","W m-2",fluxgrd)
2614	endif
2615	endif ! end of 'callrad'
2616
2617	if(enertest) then
2618
2619	if (calldifv) then
2620	call write_output("q2","turbulent kinetic energy","J.kg^-1",q2)
2621	call write_output("sensibFlux","sensible heat flux","w.m^-2",sensibFlux)
2622	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
2623	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
2624	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
2625	endif
2626
2627	if (corrk) then
2628	call write_output("dEzradsw","radiative heating","w.m^-2",dEzradsw)
2629	call write_output("dEzradlw","radiative heating","w.m^-2",dEzradlw)
2630	endif
2631
2632	if(watercond) then
2633	call write_output("lscaledE","heat from largescale","W m-2",lscaledE)
2634	if ((.not.calltherm).and.moistadjustment) then
2635	call write_output("madjdE","heat from moistadj","W m-2",madjdE)
2636	endif
2637	call write_output("qsatatm","atm qsat"," ",qsat)
2638	! call write_output("lscaledEz","heat from largescale","W m-2",lscaledEz)
2639	! call write_output("madjdEz","heat from moistadj","W m-2",madjdEz)
2640	! call write_output("h2o_max_col","maximum H2O column amount","kg.m^-2",H2Omaxcol)
2641	endif
2642
2643	if (generic_condensation) then
2644	call write_output("genericconddE","heat from generic condensation","W m-2",genericconddE)
2645	call write_output("dt_generic_condensation","heating from generic condensation","K s-1",dt_generic_condensation)
2646	endif
2647
2648	endif ! end of 'enertest'
2649
2650	! Diagnostics of optical thickness
2651	! Warning this is exp(-tau), I let you postproc with -log to have tau itself - JVO 19
2652	if (diagdtau) then
2653	do nw=1,L_NSPECTV
2654	write(str2,'(i2.2)') nw
2655	call write_output('dtauv'//str2,'Layer optical thickness attenuation in VI band '//str2,'',int_dtauv(:,nlayer:1:-1,nw))
2656	enddo
2657	do nw=1,L_NSPECTI
2658	write(str2,'(i2.2)') nw
2659	call write_output('dtaui'//str2,'Layer optical thickness attenuation in IR band '//str2,'',int_dtaui(:,nlayer:1:-1,nw))
2660	enddo
2661	endif
2662
2663	! Temporary inclusions for heating diagnostics.
2664	call write_output("zdtsw","SW heating","T s-1",zdtsw)
2665	call write_output("zdtlw","LW heating","T s-1",zdtlw)
2666	call write_output("dtrad","radiative heating","K s-1",dtrad)
2667	call write_output("zdtdyn","Dyn. heating","T s-1",zdtdyn)
2668
2669	if (tracer .or. water) call write_output("dtmoistadj","moist adj heating","K s-1",dtmoist)
2670	if (calladj) call write_output("dtdryadj","dry adj heating","K s-1",zdtadj)
2671
2672	! For Debugging.
2673	!call writediagfi(ngrid,'rnat','Terrain type',' ',2,real(rnat))
2674	!call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
2675
2676
2677	! Output aerosols.
2678	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
2679	call write_output('CO2ice_reff','CO2ice_reff','m',reffrad(:,:,iaero_co2))
2680	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
2681	call write_output('H2Oice_reff','H2Oice_reff','m',reffrad(:,:,iaero_h2o))
2682	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
2683	call write_output('CO2ice_reffcol','CO2ice_reffcol','um kg m^-2',reffcol(:,iaero_co2))
2684	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
2685	call write_output('H2Oice_reffcol','H2Oice_reffcol','um kg m^-2',reffcol(:,iaero_h2o))
2686
2687	! Output tracers.
2688	if (tracer) then
2689
2690	do iq=1,nq
2691	call write_output(noms(iq),noms(iq),'kg/kg',zq(:,:,iq))
2692	call write_output(trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2693	'kg m^-2',qsurf_hist(:,iq) )
2694	call write_output(trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
2695	'kg m^-2',qcol(:,iq) )
2696	! call write_output(trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2697	! 'kg m^-2',qsurf(:,iq) )
2698
2699	if(watercond.or.CLFvarying)then
2700	call write_output("rneb_man","H2O cloud fraction (conv)"," ",rneb_man)
2701	call write_output("rneb_lsc","H2O cloud fraction (large scale)"," ",rneb_lsc)
2702	call write_output("CLF","H2O cloud fraction"," ",cloudfrac)
2703	call write_output("CLFt","H2O column cloud fraction"," ",totcloudfrac)
2704	call write_output("RH","relative humidity"," ",RH)
2705	call write_output("vteta","virtual potential temperature","K",zh * (1.+(1./epsi-1.) * &
2706	zq(1:ngrid,1:nlayer,1)))
2707	endif
2708
2709	if(waterrain)then
2710	call write_output("rain","rainfall","kg m-2 s-1",zdqsrain)
2711	call write_output("snow","snowfall","kg m-2 s-1",zdqssnow)
2712	call write_output("reevap","reevaporation of precipitation","kg m-2 s-1",reevap_precip)
2713	endif
2714
2715	if(generic_condensation)then
2716	call write_output("CLF","GCS cloud fraction"," ",cloudfrac)
2717	!AF24: TODO fix rneb_generic and RH_generic failure with write_output()
2718	! call write_output("rneb_generic","GCS cloud fraction (generic condensation)"," ",rneb_generic)
2719	! call write_output("RH_generic","GCS relative humidity"," ",RH_generic)
2720	call writediagfi(ngrid,"rneb_generic","GCS cloud fraction (generic condensation)"," ",3,rneb_generic)
2721	call writediagfi(ngrid,"RH_generic","GCS relative humidity"," ",3,RH_generic)
2722	call write_output("vteta","virtual potential temperature","K",zh * (1.+(1./epsi_generic-1.) * &
2723	zq(1:ngrid,1:nlayer,1) ))
2724	endif
2725
2726	if(generic_rain)then
2727	call write_output("rain","generic rainfall","kg m-2 s-1",zdqsrain_generic)
2728	call write_output("snow","generic snowfall","kg m-2 s-1",zdqssnow_generic)
2729	call write_output("reevap","generic reevaporation of precipitation","kg m-2 s-1",reevap_precip_generic)
2730	endif
2731
2732	if((hydrology).and.(.not.ok_slab_ocean))then
2733	call write_output("hice","oceanic ice height","m",hice)
2734	endif
2735
2736	call write_output("tau_col","Total aerosol optical depth","[]",tau_col)
2737	enddo ! end of 'nq' loop
2738	endif ! end of 'tracer'
2739
2740	! Output spectrum.
2741	if(specOLR.and.corrk)then
2742	call writediagspecIR(ngrid,"OLR3D","OLR(lon,lat,band)","W/m^2/cm^-1",3,OLR_nu)
2743	call writediagspecVI(ngrid,"OSR3D","OSR(lon,lat,band)","W/m^2/cm^-1",3,OSR_nu)
2744	call writediagspecVI(ngrid,"GSR3D","GSR(lon,lat,band)","W/m^2/cm^-1",3,GSR_nu)
2745	endif
2746
2747	#else
2748	comm_HR_SW(1:ngrid,1:nlayer) = zdtsw(1:ngrid,1:nlayer)
2749	comm_HR_LW(1:ngrid,1:nlayer) = zdtlw(1:ngrid,1:nlayer)
2750	comm_ALBEQ(1:ngrid)=albedo_equivalent(1:ngrid)
2751	if (.not.calldifv) comm_LATENT_HF(:)=0.0
2752	if ((tracer).and.(water)) then
2753	comm_CLOUDFRAC(1:ngrid,1:nlayer)=cloudfrac(1:ngrid,1:nlayer)
2754	comm_TOTCLOUDFRAC(1:ngrid)=totcloudfrac(1:ngrid)
2755	comm_SURFRAIN(1:ngrid)=zdqsrain(1:ngrid)
2756	comm_DQVAP(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_h2o_vap)
2757	comm_DQICE(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_h2o_ice)
2758	comm_H2OICE_REFF(1:ngrid,1:nlayer)=reffrad(1:ngrid,1:nlayer,iaero_h2o)
2759	comm_REEVAP(1:ngrid)=reevap_precip(1:ngrid)
2760	comm_DTRAIN(1:ngrid,1:nlayer)=zdtrain(1:ngrid,1:nlayer)
2761	comm_DTLSC(1:ngrid,1:nlayer)=dtlscale(1:ngrid,1:nlayer)
2762	comm_RH(1:ngrid,1:nlayer)=RH(1:ngrid,1:nlayer)
2763
2764	else if ((tracer).and.(generic_condensation).and.(.not. water)) then
2765
2766	! If you have set generic_condensation (and not water) and you have set several GCS
2767	! then the outputs given to WRF will be only the ones for the last generic tracer
2768	! (Because it is rewritten every tracer in the loop)
2769	! WRF can take only one moist tracer
2770
2771	do iq=1,nq
2772	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
2773
2774	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
2775
2776	reffrad_generic_zeros_for_wrf(:,:) = 1.
2777
2778	comm_CLOUDFRAC(1:ngrid,1:nlayer) = cloudfrac(1:ngrid,1:nlayer)
2779	comm_TOTCLOUDFRAC(1:ngrid) = totcloudfrac(1:ngrid) !??????
2780	comm_SURFRAIN(1:ngrid) = zdqsrain_generic(1:ngrid,iq)
2781	comm_DQVAP(1:ngrid,1:nlayer) = pdq(1:ngrid,1:nlayer,igcm_generic_vap)
2782	comm_DQICE(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_generic_ice)
2783	comm_H2OICE_REFF(1:ngrid,1:nlayer) = reffrad_generic_zeros_for_wrf(1:ngrid,1:nlayer) ! for now zeros !
2784	!comm_H2OICE_REFF(1:ngrid,1:nlayer) = 0*zdtrain_generic(1:ngrid,1:nlayer) ! for now zeros !
2785	comm_REEVAP(1:ngrid) = reevap_precip_generic(1:ngrid,iq)
2786	comm_DTRAIN(1:ngrid,1:nlayer) = zdtrain_generic(1:ngrid,1:nlayer)
2787	comm_DTLSC(1:ngrid,1:nlayer) = dt_generic_condensation(1:ngrid,1:nlayer)
2788	comm_RH(1:ngrid,1:nlayer) = RH_generic(1:ngrid,1:nlayer,iq)
2789
2790	endif
2791	end do ! do iq=1,nq loop on tracers
2792
2793	else
2794	comm_CLOUDFRAC(1:ngrid,1:nlayer)=0.
2795	comm_TOTCLOUDFRAC(1:ngrid)=0.
2796	comm_SURFRAIN(1:ngrid)=0.
2797	comm_DQVAP(1:ngrid,1:nlayer)=0.
2798	comm_DQICE(1:ngrid,1:nlayer)=0.
2799	comm_H2OICE_REFF(1:ngrid,1:nlayer)=0.
2800	comm_REEVAP(1:ngrid)=0.
2801	comm_DTRAIN(1:ngrid,1:nlayer)=0.
2802	comm_DTLSC(1:ngrid,1:nlayer)=0.
2803	comm_RH(1:ngrid,1:nlayer)=0.
2804
2805	endif ! if water, if generic_condensation, else
2806
2807	comm_FLUXTOP_DN(1:ngrid)=fluxtop_dn(1:ngrid)
2808	comm_FLUXABS_SW(1:ngrid)=fluxabs_sw(1:ngrid)
2809	comm_FLUXTOP_LW(1:ngrid)=fluxtop_lw(1:ngrid)
2810	comm_FLUXSURF_SW(1:ngrid)=fluxsurf_sw(1:ngrid)
2811	comm_FLUXSURF_LW(1:ngrid)=fluxsurf_lw(1:ngrid)
2812	comm_FLXGRD(1:ngrid)=fluxgrd(1:ngrid)
2813	sensibFlux(1:ngrid) = zflubid(1:ngrid) - capcal(1:ngrid)*zdtsdif(1:ngrid) !!! ????
2814	comm_HR_DYN(1:ngrid,1:nlayer) = zdtdyn(1:ngrid,1:nlayer)
2815
2816	! if (turb_resolved) then
2817	! open(17,file='lsf.txt',form='formatted',status='old')
2818	! rewind(17)
2819	! DO l=1,nlayer
2820	! read(17,*) lsf_dt(l),lsf_dq(l)
2821	! ENDDO
2822	! close(17)
2823	! do ig=1,ngrid
2824	! if ((tracer).and.(water)) then
2825	! pdq(ig,:,igcm_h2o_vap) = pdq(ig,:,igcm_h2o_vap) + lsf_dq(:)
2826	! endif
2827	! pdt(ig,:) = pdt(ig,:) + lsf_dt(:)
2828	! comm_HR_DYN(ig,:) = lsf_dt(:)
2829	! enddo
2830	! endif
2831	#endif
2832
2833	! XIOS outputs
2834	#ifdef CPP_XIOS
2835	! Send fields to XIOS: (NB these fields must also be defined as
2836	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
2837	CALL send_xios_field("controle",tab_cntrl_mod,1)
2838
2839	CALL send_xios_field("ap",ap,1)
2840	CALL send_xios_field("bp",bp,1)
2841	CALL send_xios_field("aps",aps,1)
2842	CALL send_xios_field("bps",bps,1)
2843
2844	IF (water) THEN
2845	CALL send_xios_field('h2o_layer1',zq(:,1,igcm_h2o_vap))
2846	CALL send_xios_field('co2_layer1',zq(:,1,igcm_co2_ice))
2847	ENDIF
2848
2849	if (specOLR .and. corrk) then
2850	call send_xios_field("OLR3D",OLR_nu)
2851	call send_xios_field("IR_Bandwidth",DWNI)
2852	call send_xios_field("VI_Bandwidth",DWNV)
2853	call send_xios_field("OSR3D",OSR_nu)
2854	call send_xios_field("GSR3D",GSR_nu)
2855	endif
2856
2857	if (lastcall.and.is_omp_master) then
2858	write(,) "physiq: call xios_context_finalize"
2859	call xios_context_finalize
2860	endif
2861	#endif
2862
2863	if (check_physics_outputs) then
2864	! Check the validity of updated fields at the end of the physics step
2865	call check_physics_fields("end of physiq:", zt, zu, zv, pplev, zq)
2866	endif
2867
2868	icount=icount+1
2869
2870	end subroutine physiq
2871
2872	end module physiq_mod

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