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physiq_mod.F90 @ 3730

Last change on this file since 3730 was 3725, checked in by emillour, 3 months ago
Generic PCM: Change the way the rate of outputs for diagfi.nc files is specified: IMPORTANT: Specifying "ecritphy" no longer possible and will trigger an error. Use "diagfi_output_rate" to specify output rate (in physics steps) instead. This should makes things (hopefully) clearer for users and also better enforces a cleaner and clearer separation between dynamics and physics. EM
Property svn:executable set to ``*
File size: 124.5 KB

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1	module physiq_mod
2
3	implicit none
4
5	contains
6
7	subroutine physiq(ngrid,nlayer,nq, &
8	firstcall,lastcall, &
9	pday,ptime,ptimestep, &
10	pplev,pplay,pphi, &
11	pu,pv,pt,pq, &
12	flxw, &
13	pdu,pdv,pdt,pdq,pdpsrf)
14
15	!!
16	use write_field_phy, only: Writefield_phy
17	!!
18	use ioipsl_getin_p_mod, only: getin_p
19	use radinc_h, only : L_NSPECTI,L_NSPECTV,naerkind, corrkdir, banddir
20	use watercommon_h, only : RLVTT, Psat_water,epsi,su_watercycle, RW, T_h2o_ice_liq
21	use generic_cloud_common_h, only : epsi_generic, Psat_generic
22	use thermcell_mod, only: init_thermcell_mod
23	use gases_h, only: gnom, gfrac, ngasmx
24	use radcommon_h, only: sigma, glat, grav, BWNV, WNOI, DWNI, DWNV, WNOV
25	use suaer_corrk_mod, only: suaer_corrk
26	use radii_mod, only: h2o_reffrad, co2_reffrad
27	use aerosol_mod, only: iniaerosol, iaero_co2, iaero_h2o
28	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe, &
29	dryness
30	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
31	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
32	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
33	use geometry_mod, only: latitude, longitude, cell_area
34	USE comgeomfi_h, only: totarea, totarea_planet
35	USE tracer_h, only: noms, mmol, radius, rho_q, qext, &
36	alpha_lift, alpha_devil, qextrhor, &
37	igcm_h2o_ice, igcm_h2o_vap, igcm_dustbin, &
38	igcm_co2_ice, nesp, is_chim, is_condensable,constants_epsi_generic
39	use time_phylmdz_mod, only: diagfi_output_rate, nday
40	use phyetat0_mod, only: phyetat0,tab_cntrl_mod
41	use surfini_mod, only: surfini
42	use wstats_mod, only: callstats, wstats, mkstats
43	use phyredem, only: physdem0, physdem1
44	!! use slab_ice_h, only: capcalocean, capcalseaice,capcalsno, &
45	!! noceanmx
46	!! use ocean_slab_mod, only :ocean_slab_init, ocean_slab_ice, &
47	!! capcalocean, capcalseaice,capcalsno, nslay, &
48	!! ocean_slab_final
49	!! use surf_heat_transp_mod,only :init_masquv
50	use ocean_slab_mod, only :ocean_slab_init, ocean_slab_noice, ocean_slab_ice, &
51	ocean_slab_frac, ocean_slab_get_vars, &
52	capcalocean, capcalseaice,capcalsno, nslay, knon, &
53	ocean_slab_final
54	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
55	use mod_phys_lmdz_para, only : is_master
56	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
57	obliquit, nres, z0
58	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
59	use time_phylmdz_mod, only: daysec
60	use callkeys_mod, only: albedo_spectral_mode, calladj, calldifv, &
61	calllott_nonoro, callrad, callsoil, nosurf, &
62	calltherm, CLFvarying, co2cond, corrk, diagdtau, &
63	diurnal, enertest, fat1au, flatten, j2, &
64	hydrology, intheat, iradia, kastprof, &
65	lwrite, mass_redistrib, massplanet, meanOLR, &
66	nearco2cond, newtonian, noseason_day, oblate, &
67	ok_slab_ocean, photochem, rings_shadow, rmean, &
68	season, sedimentation,generic_condensation, &
69	specOLR, callthermos, callvolcano, &
70	startphy_file, testradtimes, tlocked, &
71	tracer, UseTurbDiff, water, watercond, &
72	waterrain, generic_rain, global1d, szangle, &
73	moistadjustment, moistadjustment_generic, varspec, varspec_data, nvarlayer
74	use generic_tracer_index_mod, only: generic_tracer_index
75	use nonoro_gwd_ran_mod, only: nonoro_gwd_ran
76	use check_fields_mod, only: check_physics_fields
77	use conc_mod, only: rnew, cpnew, ini_conc_mod
78	use phys_state_var_mod
79	use callcorrk_mod, only: callcorrk
80	use conduction_mod, only: conduction
81	use volcano_mod, only: volcano
82	use pindex_mod, only: pindex
83	use convadj_mod, only: convadj
84	use vdifc_mod, only: vdifc
85	use turbdiff_mod, only: turbdiff
86	use turb_mod, only : q2,sensibFlux,turb_resolved
87	use callsedim_mod, only: callsedim
88	use mass_redistribution_mod, only: mass_redistribution
89	use condensation_generic_mod, only: condensation_generic
90	use datafile_mod, only: datadir
91	use newton_cooling_hotJ, only: newtcool_MOCHA ! LT, adding for MOCHA protocol
92
93	#ifndef MESOSCALE
94	USE vertical_layers_mod, ONLY: ap,bp,aps,bps,presnivs,pseudoalt
95	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
96	#else
97	use comm_wrf, only : comm_HR_SW, comm_HR_LW, &
98	comm_CLOUDFRAC,comm_TOTCLOUDFRAC, comm_RH, &
99	comm_SURFRAIN,comm_REEVAP,comm_HR_DYN, &
100	comm_DQICE,comm_DQVAP,comm_ALBEQ, &
101	comm_FLUXTOP_DN,comm_FLUXABS_SW, &
102	comm_FLUXTOP_LW,comm_FLUXSURF_SW, &
103	comm_FLUXSURF_LW,comm_FLXGRD, &
104	comm_DTRAIN,comm_DTLSC,comm_H2OICE_REFF, &
105	comm_LATENT_HF
106
107	#endif
108
109	#ifdef CPP_XIOS
110	use xios_output_mod, only: initialize_xios_output, &
111	update_xios_timestep, &
112	send_xios_field
113	use wxios, only: wxios_context_init, xios_context_finalize
114	#endif
115	use write_output_mod, only: write_output
116
117	implicit none
118
119
120	!==================================================================
121	!
122	! Purpose
123	! -------
124	! Central subroutine for all the physics parameterisations in the
125	! universal model. Originally adapted from the Mars LMDZ model.
126	!
127	! The model can be run without or with tracer transport
128	! depending on the value of "tracer" in file "callphys.def".
129	!
130	!
131	! It includes:
132	!
133	! I. Initialization :
134	! I.1 Firstcall initializations.
135	! I.2 Initialization for every call to physiq.
136	!
137	! II. Compute radiative transfer tendencies (longwave and shortwave) :
138	! II.a Option 1 : Call correlated-k radiative transfer scheme.
139	! II.b Option 2 : Call Newtonian cooling scheme.
140	! II.c Option 3 : Atmosphere has no radiative effect.
141	!
142	! III. Vertical diffusion (turbulent mixing) :
143	!
144	! IV. Convection :
145	! IV.a Thermal plume model
146	! IV.b Dry convective adjusment
147	!
148	! V. Condensation and sublimation of gases (currently just CO2).
149	!
150	! VI. Tracers
151	! VI.1. Water and water ice.
152	! VI.2 Photochemistry
153	! VI.3. Aerosols and particles.
154	! VI.4. Updates (pressure variations, surface budget).
155	! VI.5. Slab Ocean.
156	! VI.6. Surface Tracer Update.
157	!
158	! VII. Surface and sub-surface soil temperature.
159	!
160	! VIII. Perform diagnostics and write output files.
161	!
162	!
163	! arguments
164	! ---------
165	!
166	! INPUT
167	! -----
168	!
169	! ngrid Size of the horizontal grid.
170	! nlayer Number of vertical layers.
171	! nq Number of advected fields.
172	!
173	! firstcall True at the first call.
174	! lastcall True at the last call.
175	!
176	! pday Number of days counted from the North. Spring equinoxe.
177	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
178	! ptimestep timestep (s).
179	!
180	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
181	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
182	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
183	!
184	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
185	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
186	!
187	! pt(ngrid,nlayer) Temperature (K).
188	!
189	! pq(ngrid,nlayer,nq) Advected fields.
190	!
191	! pudyn(ngrid,nlayer) \
192	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
193	! ptdyn(ngrid,nlayer) / corresponding variables.
194	! pqdyn(ngrid,nlayer,nq) /
195	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
196	!
197	! OUTPUT
198	! ------
199	!
200	! pdu(ngrid,nlayer) \
201	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
202	! pdt(ngrid,nlayer) / variables due to physical processes.
203	! pdq(ngrid,nlayer) /
204	! pdpsrf(ngrid) /
205	!
206	!
207	! Authors
208	! -------
209	! Frederic Hourdin 15/10/93
210	! Francois Forget 1994
211	! Christophe Hourdin 02/1997
212	! Subroutine completely rewritten by F. Forget (01/2000)
213	! Water ice clouds: Franck Montmessin (update 06/2003)
214	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
215	! New correlated-k radiative scheme: R. Wordsworth (2009)
216	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
217	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
218	! To F90: R. Wordsworth (2010)
219	! New turbulent diffusion scheme: J. Leconte (2012)
220	! Loops converted to F90 matrix format: J. Leconte (2012)
221	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
222	! Purge of the code : M. Turbet (2015)
223	! Photochemical core developped by F. Lefevre: B. Charnay (2017)
224	!==================================================================
225
226
227	! 0. Declarations :
228	! ------------------
229
230	include "netcdf.inc"
231
232	! Arguments :
233	! -----------
234
235	! INPUTS:
236	! -------
237
238	integer,intent(in) :: ngrid ! Number of atmospheric columns.
239	integer,intent(in) :: nlayer ! Number of atmospheric layers.
240	integer,intent(in) :: nq ! Number of tracers.
241
242	logical,intent(in) :: firstcall ! Signals first call to physics.
243	logical,intent(in) :: lastcall ! Signals last call to physics.
244
245	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
246	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
247	real,intent(in) :: ptimestep ! Physics timestep (s).
248	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
249	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
250	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
251	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
252	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
253	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
254	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
255	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
256
257	! OUTPUTS:
258	! --------
259
260	! Physical tendencies :
261
262	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
263	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
264	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
265	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
266	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
267
268	! Local saved variables:
269	! ----------------------
270	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
271	integer,save :: icount ! Counter of calls to physiq during the run.
272	!$OMP THREADPRIVATE(day_ini,icount)
273
274	! Local variables :
275	! -----------------
276
277	! Aerosol (dust or ice) extinction optical depth at reference wavelength
278	! for the "naerkind" optically active aerosols:
279
280	real,save,allocatable :: aerosol(:,:,:) ! Aerosols
281	!$OMP THREADPRIVATE(aerosol)
282	real zh(ngrid,nlayer) ! Potential temperature (K).
283	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
284	real omega(ngrid,nlayer) ! omega velocity (Pa/s, >0 when downward)
285
286	integer l,ig,ierr,iq,nw,isoil,iesp, igcm_generic_vap, igcm_generic_ice
287	logical call_ice_vap_generic ! to call only one time the ice/vap pair of a tracer
288
289	real zls ! Solar longitude (radians).
290	real zlss ! Sub solar point longitude (radians).
291	real zday ! Date (time since Ls=0, calculated in sols).
292	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
293	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
294
295	! VARIABLES for the thermal plume model
296
297	real f(ngrid) ! Mass flux norm
298	real fm(ngrid,nlayer+1) ! Mass flux
299	real fm_bis(ngrid,nlayer) ! Recasted fm
300	real entr(ngrid,nlayer) ! Entrainment
301	real detr(ngrid,nlayer) ! Detrainment
302	real dqevap(ngrid,nlayer,nq) ! water tracer mass mixing ratio variations due to evaporation
303	real dtevap(ngrid,nlayer) ! temperature variation due to evaporation
304	real zqtherm(ngrid,nlayer,nq) ! vapor mass mixing ratio after evaporation
305	real zttherm(ngrid,nlayer) ! temperature after evaporation
306	real fraca(ngrid,nlayer+1) ! Fraction of the surface that plumes occupies
307	real zw2(ngrid,nlayer+1) ! Vertical speed
308	real zw2_bis(ngrid,nlayer) ! Recasted zw2
309
310	! TENDENCIES due to various processes :
311
312	! For Surface Temperature : (K/s)
313	real zdtsurf(ngrid) ! Cumulated tendencies.
314	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
315	real zdtsurfc(ngrid) ! Condense_co2 routine.
316	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
317	real zdtsurf_hyd(ngrid) ! Hydrol routine.
318
319	! For Thermosphere : (K/s)
320	real zdtconduc(ngrid,nlayer)
321
322	! For Atmospheric Temperatures : (K/s)
323	real dtlscale(ngrid,nlayer) ! Largescale routine.
324	real dt_generic_condensation(ngrid,nlayer) ! condensation_generic routine.
325	real zdtc(ngrid,nlayer) ! Condense_co2 routine.
326	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
327	real zdttherm(ngrid,nlayer) ! Calltherm routine.
328	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
329	real zdtrain(ngrid,nlayer) ! Rain routine.
330	real zdtrain_generic(ngrid,nlayer) ! Rain_generic routine.
331	real dtmoist(ngrid,nlayer) ! Moistadj routine.
332	real dt_ekman(ngrid,nslay), dt_hdiff(ngrid,nslay), dt_gm(ngrid,nslay) ! Slab_ocean routine.
333	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
334	real zdtchim(ngrid,nlayer) ! Calchim routine.
335
336	! For Surface Tracers : (kg/m2/s)
337	real dqsurf(ngrid,nq) ! Cumulated tendencies.
338	real zdqsurfc(ngrid) ! Condense_co2 routine.
339	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
340	real zdqssed(ngrid,nq) ! Callsedim routine.
341	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
342	real zdqsrain(ngrid), zdqssnow(ngrid) ! Rain routine.
343	real zdqsrain_generic(ngrid,nq), zdqssnow_generic(ngrid,nq) ! Rain_generic routine.
344	real dqs_hyd(ngrid,nq) ! Hydrol routine.
345	real reevap_precip(ngrid) ! re-evaporation flux of precipitation (integrated over the atmospheric column)
346	real reevap_precip_generic(ngrid,nq)
347
348	! For Tracers : (kg/kg_of_air/s)
349	real zdqc(ngrid,nlayer,nq) ! Condense_co2 routine.
350	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
351	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
352	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
353	real zdqtherm(ngrid,nlayer,nq) ! Calltherm routine.
354	real zdqsed(ngrid,nlayer,nq) ! Callsedim routine.
355	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
356	real zdqrain(ngrid,nlayer,nq) ! Rain routine.
357	real dqmoist(ngrid,nlayer,nq) ! Moistadj routine.
358	real dqvaplscale(ngrid,nlayer) ! Largescale routine.
359	real dqcldlscale(ngrid,nlayer) ! Largescale routine.
360	real dqvaplscale_generic(ngrid,nlayer,nq) ! condensation_generic routine.
361	real dqcldlscale_generic(ngrid,nlayer,nq) ! condensation_generic routine.
362	real dq_rain_generic_vap(ngrid,nlayer,nq) ! rain_generic routine
363	real dq_rain_generic_cld(ngrid,nlayer,nq) ! rain_generic routine
364	REAL,allocatable,save :: zdqchim(:,:,:) ! Calchim_asis routine
365	REAL,allocatable,save :: zdqschim(:,:) ! Calchim_asis routine
366	REAL zdqradio(ngrid,nlayer,nq) ! Radioactive decay
367	!$OMP THREADPRIVATE(zdqchim,zdqschim)
368	real zdqvolc(ngrid,nlayer,nq) ! injection by volcanoes (kg/kg_of_air/s)
369
370	REAL array_zero1(ngrid)
371	REAL array_zero2(ngrid,nlayer)
372
373	! For Winds : (m/s/s)
374	real zdvadj(ngrid,nlayer), zduadj(ngrid,nlayer) ! Convadj routine.
375	real zdutherm(ngrid,nlayer), zdvtherm(ngrid,nlayer) ! Calltherm routine.
376	real zdumr(ngrid,nlayer), zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
377	real zdvdif(ngrid,nlayer), zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
378	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
379	real zdhadj(ngrid,nlayer) ! Convadj routine.
380
381	! For Pressure and Mass :
382	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
383	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
384	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
385
386
387
388	! Local variables for LOCAL CALCULATIONS:
389	! ---------------------------------------
390	real zflubid(ngrid)
391	real zplanck(ngrid),zpopsk(ngrid,nlayer)
392	real ztim1,ztim2,ztim3, z1,z2
393	real ztime_fin
394	real zdh(ngrid,nlayer)
395	real gmplanet
396	real taux(ngrid),tauy(ngrid)
397
398
399	! local variables for DIAGNOSTICS : (diagfi & stat)
400	! -------------------------------------------------
401
402	real tice(ngrid) ! Sea ice temperature
403
404	real ps(ngrid) ! Surface Pressure.
405	real zt(ngrid,nlayer) ! Atmospheric Temperature.
406	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
407	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
408	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
409	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
410	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
411
412	real reff(ngrid,nlayer) ! Effective dust radius (used if doubleq=T).
413	real vmr(ngrid,nlayer) ! volume mixing ratio
414	real time_phys
415
416	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
417
418	real qcol(ngrid,nq) ! Tracer Column Mass (kg/m2).
419
420	! included by RW for H2O Manabe scheme
421	real rneb_man(ngrid,nlayer) ! H2O cloud fraction (moistadj).
422	real rneb_lsc(ngrid,nlayer) ! H2O cloud fraction (large scale).
423
424
425	! to test energy conservation (RW+JL)
426	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
427	real dEtot, dEtots, AtmToSurf_TurbFlux
428	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
429	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
430
431	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
432
433	real dtmoist_max,dtmoist_min
434	real dItot, dItot_tmp, dVtot, dVtot_tmp
435
436
437	real h2otot ! Total Amount of water. For diagnostic.
438	real icesrf,liqsrf,icecol,vapcol ! Total Amounts of water (ice,liq,vap). For diagnostic.
439	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
440	logical,save :: watertest
441	!$OMP THREADPRIVATE(watertest)
442
443	real qsat(ngrid,nlayer) ! Water Vapor Volume Mixing Ratio at saturation (kg/kg_of_air).
444	real RH(ngrid,nlayer) ! Relative humidity.
445	real psat_tmp
446
447	real qsat_generic(ngrid,nlayer,nq) ! generic condensable tracers (GCS) specific concentration at saturation (kg/kg_of_air).
448	real RH_generic(ngrid,nlayer,nq) ! generic condensable tracers (GCS) Relative humidity.
449	real rneb_generic(ngrid,nlayer,nq) ! GCS cloud fraction (generic condensation).
450	real psat_tmp_generic
451	real, save :: metallicity ! metallicity of planet --- is not used here, but necessary to call function Psat_generic
452	!$OMP THREADPRIVATE(metallicity)
453
454	real reffrad_generic_zeros_for_wrf(ngrid,nlayer) ! !!! this is temporary, it is only a list of zeros, it will be replaced when a generic aerosol will be implemented
455
456	logical clearsky ! For double radiative transfer call. By BC
457
458	! For Clear Sky Case.
459	real fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
460	real tau_col1(ngrid) ! For aerosol optical depth diagnostic.
461	real OLR_nu1(ngrid,L_NSPECTI) ! Clear sky TOA LW radiation in each IR band
462	real OSR_nu1(ngrid,L_NSPECTV) ! Clear sky TOA SW radiation in each VI band
463	real GSR_nu1(ngrid,L_NSPECTV) ! Clear sky Surface SW radiation in each VI band
464	real int_dtaui1(ngrid,nlayer,L_NSPECTI),int_dtauv1(ngrid,nlayer,L_NSPECTV) ! For optical thickness diagnostics.
465	real tf, ntf
466
467	real net_fluxsurf_lw(ngrid) ! net longwave flux at the surface (for diagnostics only)
468
469	real nconsMAX, vdifcncons(ngrid), cadjncons(ngrid) ! Vdfic water conservation test. By RW
470
471	real muvar(ngrid,nlayer+1) ! For Runaway Greenhouse 1D study. By RW
472
473	! For fixed variable molar mass
474	real, dimension(:),allocatable,save :: p_var
475	real, dimension(:),allocatable,save :: mu_var
476	real, dimension(:,:),allocatable,save :: frac_var
477	!$OMP THREADPRIVATE(p_var,mu_var,frac_var)
478	real :: mu_vari(nlayer)
479	real :: muvari(ngrid,nlayer)
480	integer ios,k
481	character*100 dt_file
482
483	real,save,allocatable :: reffcol(:,:)
484	!$OMP THREADPRIVATE(reffcol)
485
486	! Non-oro GW tendencies
487	REAL d_u_hin(ngrid,nlayer), d_v_hin(ngrid,nlayer)
488	REAL d_t_hin(ngrid,nlayer)
489	! Diagnostics 2D of gw_nonoro
490	REAL zustrhi(ngrid), zvstrhi(ngrid)
491
492
493	real :: tsurf2(ngrid)
494	!! real :: flux_o(ngrid),flux_g(ngrid)
495	real :: flux_g(ngrid)
496	real :: flux_sens_lat(ngrid)
497	real :: qsurfint(ngrid,nq)
498	#ifdef MESOSCALE
499	REAL :: lsf_dt(nlayer)
500	REAL :: lsf_dq(nlayer)
501	#endif
502
503	! flags to trigger extra sanity checks
504	logical, save :: check_physics_inputs=.false.
505	logical, save :: check_physics_outputs=.false.
506	!$OPM THREADPRIVATE(check_physics_inputs,check_physics_outputs)
507
508	! Misc
509	character*2 :: str2
510	character(len=10) :: tmp1
511	character(len=10) :: tmp2
512	!==================================================================================================
513
514	! -----------------
515	! I. INITIALISATION
516	! -----------------
517
518	! --------------------------------
519	! I.1 First Call Initialisation.
520	! --------------------------------
521	if (firstcall) then
522	call getin_p("check_physics_inputs", check_physics_inputs)
523	call getin_p("check_physics_outputs", check_physics_outputs)
524
525	! Allocate saved arrays (except for 1D model, where this has already
526	! been done)
527	#ifndef MESOSCALE
528	if (ngrid>1) call phys_state_var_init(nq)
529	#endif
530
531	! Variables set to 0
532	! ~~~~~~~~~~~~~~~~~~
533	dtrad(:,:) = 0.0
534	fluxrad(:) = 0.0
535	tau_col(:) = 0.0
536	zdtsw(:,:) = 0.0
537	zdtlw(:,:) = 0.0
538	zdtconduc(:,:) = 0.0
539
540	! Initialize fixed variable mu
541	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
542
543	if(varspec) then
544	IF (.NOT.ALLOCATED(p_var)) ALLOCATE(p_var(nvarlayer))
545	IF (.NOT.ALLOCATED(mu_var)) ALLOCATE(mu_var(nvarlayer))
546	IF (.NOT.ALLOCATED(frac_var)) ALLOCATE(frac_var(nvarlayer,ngasmx))
547	p_var = 0.0
548	mu_var = 0.0
549	frac_var = 0.0
550	muvari = 0.0
551	dt_file=TRIM(varspec_data)
552	open(33,file=dt_file,form='formatted',status='old',iostat=ios)
553	if (ios.ne.0) then ! file not found
554	write(,) 'Error from varspec'
555	write(,) 'Data file ',trim(varspec_data),' not found.'
556	write(,) 'Check that the data is in your run repository.'
557	call abort_physic !a verifier
558	else
559	do k=1,nvarlayer
560	read(33,*) p_var(k), mu_var(k),frac_var(k,1:ngasmx)
561	!The order of columns in frac_var must correspond to order of molecules gases.def
562	!The format of your file must be:
563	! pressure(k) molar_mass(k), molar_fraction_of_gas_1(k), molar_fraction_of_gas_2(k),..., molar_fraction_of_gas_ngasmx(k)
564	enddo
565	endif
566	close(33)
567	else
568	IF (.NOT.ALLOCATED(p_var)) ALLOCATE(p_var(nlayer))
569	IF (.NOT.ALLOCATED(mu_var)) ALLOCATE(mu_var(nlayer))
570	IF (.NOT.ALLOCATED(frac_var)) ALLOCATE(frac_var(nlayer,ngasmx))
571	endif
572
573	! Initialize tracer names, indexes and properties.
574	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
575	IF (.NOT.ALLOCATED(noms)) ALLOCATE(noms(nq)) ! (because noms is an argument of physdem1 whether or not tracer is on)
576	if (tracer) then
577	call initracer(ngrid,nq)
578	if(photochem) then
579	call ini_conc_mod(ngrid,nlayer)
580	IF (.NOT.ALLOCATED(zdqchim)) ALLOCATE(zdqchim(ngrid,nlayer,nesp))
581	IF (.NOT.ALLOCATED(zdqschim)) ALLOCATE(zdqschim(ngrid,nesp))
582	endif
583	endif
584	! Initialize aerosol indexes.
585	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~
586	call iniaerosol
587	! allocate related local arrays
588	! (need be allocated instead of automatic because of "naerkind")
589	allocate(aerosol(ngrid,nlayer,naerkind))
590	allocate(reffcol(ngrid,naerkind))
591
592	#ifdef CPP_XIOS
593	! Initialize XIOS context
594	write(,) "physiq: call wxios_context_init"
595	CALL wxios_context_init
596	#endif
597
598	! Read 'startfi.nc' file.
599	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
600	#ifndef MESOSCALE
601	call phyetat0(startphy_file, &
602	ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
603	day_ini,time_phys,tsurf,tsoil,emis,albedo, &
604	q2,qsurf,cloudfrac,totcloudfrac,hice, &
605	rnat,pctsrf_sic,tslab,tsea_ice,tice,sea_ice)
606
607	#else
608
609	day_ini = pday
610	#endif
611
612	#ifndef MESOSCALE
613	if (.not.startphy_file) then
614	! additional "academic" initialization of physics
615	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
616	tsurf(:)=pt(:,1)
617	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
618	do isoil=1,nsoilmx
619	tsoil(1:ngrid,isoil)=tsurf(1:ngrid)
620	enddo
621	if (is_master) write(,) "Physiq: initializing day_ini to pday !"
622	day_ini=pday
623	endif
624	#endif
625	if (pday.ne.day_ini) then
626	write(,) "ERROR in physiq.F90:"
627	write(,) "bad synchronization between physics and dynamics"
628	write(,) "dynamics day: ",pday
629	write(,) "physics day: ",day_ini
630	stop
631	endif
632
633	write (,) 'In physiq day_ini =', day_ini
634
635	! Initialize albedo calculation.
636	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
637	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground,&
638	albedo_snow_SPECTV,albedo_co2_ice_SPECTV)
639
640	! Initialize orbital calculation.
641	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
642	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
643
644
645	if(tlocked)then
646	print*,'Planet is tidally locked at resonance n=',nres
647	print*,'Make sure you have the right rotation rate!!!'
648	endif
649
650	! Initialize oceanic variables.
651	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
652
653	if (ok_slab_ocean)then
654
655	!! call ocean_slab_init(ngrid,ptimestep, tslab, &
656	!! sea_ice, pctsrf_sic)
657
658	!! call ini_surf_heat_transp_mod()
659
660	knindex(:) = 0
661	knon = 0
662
663	do ig=1,ngrid
664	zmasq(ig)=1
665	! knindex(ig) = ig
666	if (nint(rnat(ig)).eq.0) then ! rnat = 0 (ocean), 1 (continent)
667	zmasq(ig)=0
668	knon=knon+1
669	knindex(knon)=ig
670	endif
671	enddo
672
673	call ocean_slab_init(ptimestep, pctsrf_sic, tslab, tice, sea_ice, zmasq)
674
675	!! CALL init_masquv(ngrid,zmasq)
676	! ensure that "slab" variables match "physiq" ones
677	call ocean_slab_get_vars(ngrid, tslab, tice, sea_ice, flux_g, &
678	dt_hdiff, dt_ekman, dt_gm)
679
680	endif ! end of 'ok_slab_ocean'.
681
682
683	! Initialize soil.
684	! ~~~~~~~~~~~~~~~~
685	if (callsoil) then
686
687	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
688	ptimestep,tsurf,tsoil,capcal,fluxgrd)
689
690	if (ok_slab_ocean) then
691	! mimic what is done during a regular time step
692	do ig=1,ngrid
693	fluxgrdocean(ig)=fluxgrd(ig)
694	if (nint(rnat(ig)).eq.0) then
695	capcal(ig)=capcalocean
696	fluxgrd(ig)=0.
697	! Dividing by cell area to have flux in W/m2
698	fluxgrdocean(ig)=flux_g(ig)+(1-pctsrf_sic(ig))*(dt_hdiff(ig,1)+dt_ekman(ig,1)+dt_gm(ig,1))/cell_area(ig)
699	do iq=1,nsoilmx
700	tsoil(ig,iq)=tsurf(ig)
701	enddo
702	if (pctsrf_sic(ig).gt.0.5) then
703	capcal(ig)=capcalseaice
704	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
705	capcal(ig)=capcalsno
706	endif
707	endif ! of if (pctsrf_sic(ig).gt.0.5)
708	endif ! of if (nint(rnat(ig)).eq.0)
709	enddo ! of do ig=1,ngrid
710	endif ! end of 'ok_slab_ocean'.
711
712	else ! else of 'callsoil'.
713
714	print*,'WARNING! Thermal conduction in the soil turned off'
715	capcal(:)=1.e6
716	fluxgrd(:)=intheat
717	print*,'Flux from ground = ',intheat,' W m^-2'
718
719	endif ! end of 'callsoil'.
720
721	icount=1
722
723	! Here is defined the type of the surface : Continent or Ocean.
724	! BC2014 : This is now already done in newstart.
725	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
726	if (.not.ok_slab_ocean) then
727
728	rnat(:)=1.
729	if (.not.nosurf) then ! inertiedat only defined if there is a surface
730	do ig=1,ngrid
731	if(inertiedat(ig,1).gt.1.E4)then
732	rnat(ig)=0
733	endif
734	enddo
735
736	print*,'WARNING! Surface type currently decided by surface inertia'
737	print*,'This should be improved e.g. in newstart.F'
738	endif
739	endif ! end of 'ok_slab_ocean'.
740
741
742	! Initialize surface history variable.
743	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
744	qsurf_hist(:,:)=qsurf(:,:)
745
746	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
747	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
748	ztprevious(:,:)=pt(:,:)
749	zuprevious(:,:)=pu(:,:)
750
751	! Set temperature just above condensation temperature (for Early Mars)
752	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
753	if(nearco2cond) then
754	write(,)' WARNING! Starting at Tcond+1K'
755	do l=1, nlayer
756	do ig=1,ngrid
757	pdt(ig,l)= ((-3167.8)/(log(.01*pplay(ig,l))-23.23)+4 &
758	-pt(ig,l)) / ptimestep
759	enddo
760	enddo
761	endif
762
763	if(meanOLR)then
764	call system('rm -f rad_bal.out') ! to record global radiative balance.
765	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
766	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
767	endif
768
769
770	watertest=.false.
771	if(water)then ! Initialize variables for water cycle
772
773	if(enertest)then
774	watertest = .true.
775	endif
776
777	endif
778
779	! Set metallicity for GCS
780	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
781	metallicity=0.0 ! default value --- is not used here but necessary to call function Psat_generic
782	call getin_p("metallicity",metallicity) ! --- is not used here but necessary to call function Psat_generic
783
784	! Set some parameters for the thermal plume model
785	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
786	if (calltherm) then
787	CALL init_thermcell_mod(g, rcp, r, pi, T_h2o_ice_liq, RW)
788	endif
789
790	call su_watercycle ! even if we don't have a water cycle, we might
791	! need epsi for the wvp definitions in callcorrk.F
792	! or RETV, RLvCp for the thermal plume model
793
794	#ifndef MESOSCALE
795	!if (ngrid.ne.1) then ! Note : no need to create a restart file in 1d.
796	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
797	ptimestep,pday+nday,time_phys,cell_area, &
798	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
799	!endif
800
801	#endif
802	if (corrk) then
803	! We initialise the spectral grid here instead of
804	! at firstcall of callcorrk so we can output XspecIR, XspecVI
805	! when using Dynamico
806	print*, "physiq_mod: Correlated-k data base folder:",trim(datadir)
807	call getin_p("corrkdir",corrkdir)
808	print*,"corrkdir = ", corrkdir
809	write (tmp1, '(i4)') L_NSPECTI
810	write (tmp2, '(i4)') L_NSPECTV
811	banddir=trim(trim(adjustl(tmp1))//'x'//trim(adjustl(tmp2)))
812	banddir=trim(trim(adjustl(corrkdir))//'/'//trim(adjustl(banddir)))
813	call setspi !Basic infrared properties.
814	call setspv ! Basic visible properties.
815	call sugas_corrk ! Set up gaseous absorption properties.
816	call suaer_corrk ! Set up aerosol optical properties.
817	endif
818
819	! XIOS outputs
820	#ifdef CPP_XIOS
821
822	write(,) "physiq: call initialize_xios_output"
823	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
824	year_day,presnivs,pseudoalt,WNOI,WNOV)
825	#endif
826
827	write(,) "physiq: end of firstcall"
828	endif ! end of 'firstcall'
829
830
831	if (check_physics_inputs) then
832	!check the validity of input fields coming from the dynamics
833	call check_physics_fields("begin physiq:", pt, pu, pv, pplev, pq)
834	endif
835
836
837	! ------------------------------------------------------
838	! I.2 Initializations done at every physical timestep:
839	! ------------------------------------------------------
840
841	#ifdef CPP_XIOS
842	! update XIOS time/calendar
843	call update_xios_timestep
844	#endif
845
846	! Initialize various variables
847	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
848
849	if ( .not.nearco2cond ) then
850	pdt(1:ngrid,1:nlayer) = 0.0
851	endif
852	zdtsurf(1:ngrid) = 0.0
853	pdq(1:ngrid,1:nlayer,1:nq) = 0.0
854	dqsurf(1:ngrid,1:nq)= 0.0
855	pdu(1:ngrid,1:nlayer) = 0.0
856	pdv(1:ngrid,1:nlayer) = 0.0
857	pdpsrf(1:ngrid) = 0.0
858	zflubid(1:ngrid) = 0.0
859	flux_sens_lat(1:ngrid) = 0.0
860	taux(1:ngrid) = 0.0
861	tauy(1:ngrid) = 0.0
862	net_fluxsurf_lw(1:ngrid) = 0.0
863
864	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
865
866	! Compute Stellar Longitude (Ls), and orbital parameters.
867	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
868	if (season) then
869	call stellarlong(zday,zls)
870	else
871	call stellarlong(noseason_day,zls)
872	end if
873
874	call orbite(zls,dist_star,declin,right_ascen)
875
876	if (tlocked) then
877	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
878	elseif (diurnal) then
879	zlss=-2.pi(zday-.5)
880	else if(diurnal .eqv. .false.) then
881	zlss=9999.
882	endif
883
884
885	! Compute variations of g with latitude (oblate case).
886	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
887	if (oblate .eqv. .false.) then
888	glat(:) = g
889	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
890	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute glat (else set oblate=.false.)'
891	call abort
892	else
893	gmplanet = MassPlanetgrav1e24
894	do ig=1,ngrid
895	glat(ig)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
896	end do
897	endif
898
899	! Compute geopotential between layers.
900	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
901	zzlay(1:ngrid,1:nlayer)=pphi(1:ngrid,1:nlayer)
902	do l=1,nlayer
903	zzlay(1:ngrid,l)= zzlay(1:ngrid,l)/glat(1:ngrid)
904	enddo
905
906	zzlev(1:ngrid,1)=0.
907
908	do l=2,nlayer
909	do ig=1,ngrid
910	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
911	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
912	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
913	enddo
914	enddo
915
916	!Altitude of top interface (nlayer+1), using the thicknesss of the level below the top one. LT22
917
918	zzlev(1:ngrid,nlayer+1) = 2*zzlev(1:ngrid,nlayer)-zzlev(1:ngrid,nlayer-1)
919
920	! Compute potential temperature
921	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
922	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
923	do l=1,nlayer
924	do ig=1,ngrid
925	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
926	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
927	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
928	massarea(ig,l)=mass(ig,l)*cell_area(ig)
929	enddo
930	enddo
931
932	! Compute vertical velocity (m/s) from vertical mass flux
933	! w = F / (rhoarea) and rho = P/(rT)
934	! But first linearly interpolate mass flux to mid-layers
935	do l=1,nlayer-1
936	pw(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
937	enddo
938	pw(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
939	do l=1,nlayer
940	pw(1:ngrid,l)=(pw(1:ngrid,l)rpt(1:ngrid,l)) / &
941	(pplay(1:ngrid,l)*cell_area(1:ngrid))
942	enddo
943	! omega in Pa/s
944	do l=1,nlayer-1
945	omega(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
946	enddo
947	omega(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
948	do l=1,nlayer
949	omega(1:ngrid,l)=g*omega(1:ngrid,l)/cell_area(1:ngrid)
950	enddo
951
952	! ----------------------------------------------------------------
953	! Compute mean mass, cp, and R
954	! --------------------------------
955	#ifndef MESOSCALE
956	if(photochem) then
957	call concentrations(ngrid,nlayer,nq,pplay,pt,pdt,pq,pdq,ptimestep)
958	endif
959	#endif
960
961	!---------------------------------
962	! II. Compute radiative tendencies
963	!---------------------------------
964
965	! Compute local stellar zenith angles
966	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
967	if (tlocked) then
968	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
969	ztim1=SIN(declin)
970	ztim2=COS(declin)*COS(zlss)
971	ztim3=COS(declin)*SIN(zlss)
972
973	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
974	ztim1,ztim2,ztim3,mu0,fract, flatten)
975
976	elseif (diurnal) then
977	ztim1=SIN(declin)
978	ztim2=COS(declin)COS(2.pi*(zday-.5))
979	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
980
981	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
982	ztim1,ztim2,ztim3,mu0,fract, flatten)
983	else if(diurnal .eqv. .false.) then
984
985	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
986	! WARNING: this function appears not to work in 1D
987
988	if ((ngrid.eq.1).and.(global1d)) then ! Fixed zenith angle 'szangle' in 1D simulations w/ globally-averaged sunlight.
989	mu0 = cos(pi*szangle/180.0)
990	endif
991
992	endif
993
994	if (callrad) then
995
996	if( mod(icount-1,iradia).eq.0) then
997
998	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
999	if(rings_shadow) then
1000	call call_rings(ngrid, ptime, pday, diurnal)
1001	endif
1002
1003
1004	if (corrk) then
1005
1006	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1007	! II.a Call correlated-k radiative transfer scheme
1008	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1009	if(kastprof)then
1010	print*,'kastprof should not = true here'
1011	call abort
1012	endif
1013	if(water) then
1014	! take into account water effect on mean molecular weight
1015	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,1:nlayer,igcm_h2o_vap))
1016	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,nlayer,igcm_h2o_vap))
1017	elseif(generic_condensation) then
1018	! take into account generic condensable specie (GCS) effect on mean molecular weight
1019	do iq=1,nq
1020
1021	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
1022
1023	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
1024
1025	epsi_generic=constants_epsi_generic(iq)
1026
1027	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi_generic-1.e0)*pq(1:ngrid,1:nlayer,igcm_generic_vap))
1028	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi_generic-1.e0)*pq(1:ngrid,nlayer,igcm_generic_vap))
1029
1030	endif
1031	end do ! do iq=1,nq loop on tracers
1032	elseif(varspec) then
1033	!take into account fixed variable mean molecular weight
1034	do ig=1,ngrid
1035	call pindex(p_var,mu_var,pplay(ig,:),nvarlayer,nlayer,mu_vari)
1036	muvari(ig,:) = mu_vari
1037	enddo
1038
1039	muvar(1:ngrid,1:nlayer) = muvari(1:ngrid,1:nlayer)
1040	muvar(1:ngrid,nlayer+1) = muvari(1:ngrid,nlayer)
1041
1042	else
1043	muvar(1:ngrid,1:nlayer+1)=mugaz
1044	endif
1045
1046
1047	if(ok_slab_ocean) then
1048	tsurf2(:)=tsurf(:)
1049	do ig=1,ngrid
1050	if (nint(rnat(ig))==0) then
1051	tsurf(ig)=((1.-pctsrf_sic(ig))tslab(ig,1)4+pctsrf_sic(ig)tsea_ice(ig)4)0.25
1052	endif
1053	enddo
1054	endif !(ok_slab_ocean)
1055
1056	! standard callcorrk
1057	clearsky=.false.
1058	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
1059	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
1060	tsurf,fract,dist_star,aerosol,muvar, &
1061	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
1062	fluxsurfabs_sw,fluxtop_lw, &
1063	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu,GSR_nu, &
1064	int_dtaui,int_dtauv, &
1065	tau_col,cloudfrac,totcloudfrac, &
1066	clearsky,p_var,frac_var,firstcall,lastcall)
1067
1068	!GG (feb2021): Option to "artificially" decrease the raditive time scale in
1069	!the deep atmosphere press > 0.1 bar. Suggested by MT.
1070	!! COEFF_RAD to be "tuned" to facilitate convergence of tendency
1071
1072	!coeff_rad=0. ! 0 values, it doesn't accelerate the convergence
1073	!coeff_rad=0.5
1074	!coeff_rad=1.
1075	!do l=1, nlayer
1076	! do ig=1,ngrid
1077	! if(pplay(ig,l).ge.1.d4) then
1078	! zdtsw(ig,l)=zdtsw(ig,l)(pplay(ig,l)/1.d4)*coeff_rad
1079	! zdtlw(ig,l)=zdtlw(ig,l)(pplay(ig,l)/1.d4)*coeff_rad
1080	! endif
1081	! enddo
1082	!enddo
1083
1084	! Option to call scheme once more for clear regions
1085	if(CLFvarying)then
1086
1087	! ---> PROBLEMS WITH ALLOCATED ARRAYS : temporary solution in callcorrk: do not deallocate if CLFvarying ...
1088	clearsky=.true.
1089	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
1090	albedo,albedo_equivalent1,emis,mu0,pplev,pplay,pt, &
1091	tsurf,fract,dist_star,aerosol,muvar, &
1092	zdtlw1,zdtsw1,fluxsurf_lw1,fluxsurf_sw1, &
1093	fluxsurfabs_sw1,fluxtop_lw1, &
1094	fluxabs_sw1,fluxtop_dn,OLR_nu1,OSR_nu1,GSR_nu1, &
1095	int_dtaui1,int_dtauv1, &
1096	tau_col1,cloudfrac,totcloudfrac, &
1097	clearsky,p_var,frac_var,firstcall,lastcall)
1098	clearsky = .false. ! just in case.
1099
1100	! Sum the fluxes and heating rates from cloudy/clear cases
1101	do ig=1,ngrid
1102	tf=totcloudfrac(ig)
1103	ntf=1.-tf
1104	fluxsurf_lw(ig) = ntffluxsurf_lw1(ig) + tffluxsurf_lw(ig)
1105	fluxsurf_sw(ig) = ntffluxsurf_sw1(ig) + tffluxsurf_sw(ig)
1106	albedo_equivalent(ig) = ntfalbedo_equivalent1(ig) + tfalbedo_equivalent(ig)
1107	fluxsurfabs_sw(ig) = ntffluxsurfabs_sw1(ig) + tffluxsurfabs_sw(ig)
1108	fluxtop_lw(ig) = ntffluxtop_lw1(ig) + tffluxtop_lw(ig)
1109	fluxabs_sw(ig) = ntffluxabs_sw1(ig) + tffluxabs_sw(ig)
1110	tau_col(ig) = ntftau_col1(ig) + tftau_col(ig)
1111
1112	zdtlw(ig,1:nlayer) = ntfzdtlw1(ig,1:nlayer) + tfzdtlw(ig,1:nlayer)
1113	zdtsw(ig,1:nlayer) = ntfzdtsw1(ig,1:nlayer) + tfzdtsw(ig,1:nlayer)
1114
1115	OSR_nu(ig,1:L_NSPECTV) = ntfOSR_nu1(ig,1:L_NSPECTV) + tfOSR_nu(ig,1:L_NSPECTV)
1116	GSR_nu(ig,1:L_NSPECTV) = ntfGSR_nu1(ig,1:L_NSPECTV) + tfGSR_nu(ig,1:L_NSPECTV)
1117	OLR_nu(ig,1:L_NSPECTI) = ntfOLR_nu1(ig,1:L_NSPECTI) + tfOLR_nu(ig,1:L_NSPECTI)
1118	if (diagdtau) then
1119	int_dtauv(ig,:,1:L_NSPECTV) = ntfint_dtauv1(ig,:,1:L_NSPECTV) + tfint_dtauv(ig,:,1:L_NSPECTV)
1120	int_dtaui(ig,:,1:L_NSPECTI) = ntfint_dtaui1(ig,:,1:L_NSPECTI) + tfint_dtaui(ig,:,1:L_NSPECTI)
1121	endif
1122	enddo
1123
1124	endif ! end of CLFvarying.
1125
1126	if(ok_slab_ocean) then
1127	tsurf(:)=tsurf2(:)
1128	endif
1129
1130
1131	! Radiative flux from the sky absorbed by the surface (W.m-2).
1132	GSR=0.0
1133	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+fluxsurfabs_sw(1:ngrid)
1134	net_fluxsurf_lw(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
1135
1136	!if(noradsurf)then ! no lower surface; SW flux just disappears
1137	! GSR = SUM(fluxsurf_sw(1:ngrid)*cell_area(1:ngrid))/totarea
1138	! fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
1139	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
1140	!endif
1141
1142	! Net atmospheric radiative heating rate (K.s-1)
1143	dtrad(1:ngrid,1:nlayer)=zdtsw(1:ngrid,1:nlayer)+zdtlw(1:ngrid,1:nlayer)
1144
1145	! Late initialization of the Ice Spectral Albedo. We needed the visible bands to do that !
1146	if (firstcall .and. albedo_spectral_mode) then
1147	call spectral_albedo_calc(albedo_snow_SPECTV)
1148	endif
1149
1150	elseif(newtonian)then
1151
1152	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1153	! II.b Call Newtonian cooling scheme
1154	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1155	! call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
1156	call newtcool_MOCHA(ngrid,nlayer,coslon,coslat,pt,pplay,firstcall,lastcall,dtrad)
1157
1158	zdtsurf(1:ngrid) = +(pt(1:ngrid,1)-tsurf(1:ngrid))/ptimestep
1159	! e.g. surface becomes proxy for 1st atmospheric layer ?
1160	fluxrad_sky(1:ngrid) = 0. ! otherwise, not initialized!
1161
1162	else
1163
1164	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1165	! II.c Atmosphere has no radiative effect
1166	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1167	fluxtop_dn(1:ngrid) = fract(1:ngrid)mu0(1:ngrid)Fat1AU/dist_star**2
1168	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
1169	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
1170	endif
1171	fluxsurf_sw(1:ngrid) = fluxtop_dn(1:ngrid)
1172	print*,'------------WARNING---WARNING------------' ! by MT2015.
1173	print*,'You are in corrk=false mode, '
1174	print*,'and the surface albedo is taken equal to the first visible spectral value'
1175
1176	fluxsurfabs_sw(1:ngrid) = fluxtop_dn(1:ngrid)*(1.-albedo(1:ngrid,1))
1177	fluxrad_sky(1:ngrid) = fluxsurfabs_sw(1:ngrid)
1178	fluxtop_lw(1:ngrid) = emis(1:ngrid)sigmatsurf(1:ngrid)**4
1179
1180	dtrad(1:ngrid,1:nlayer)=0.0 ! no atmospheric radiative heating
1181
1182	endif ! end of corrk
1183
1184	endif ! of if(mod(icount-1,iradia).eq.0)
1185
1186
1187	! Transformation of the radiative tendencies
1188	! ------------------------------------------
1189
1190	zplanck(1:ngrid)=tsurf(1:ngrid)*tsurf(1:ngrid)
1191	zplanck(1:ngrid)=emis(1:ngrid)sigmazplanck(1:ngrid)*zplanck(1:ngrid)
1192	net_fluxsurf_lw(1:ngrid)=net_fluxsurf_lw(1:ngrid)-zplanck(1:ngrid)
1193	fluxrad(1:ngrid)=fluxrad_sky(1:ngrid)-zplanck(1:ngrid)
1194	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+dtrad(1:ngrid,1:nlayer)
1195
1196	! Test of energy conservation
1197	!----------------------------
1198	if(enertest)then
1199	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
1200	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
1201	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
1202	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
1203	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
1204	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
1205	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
1206	if (is_master) then
1207	print*,'---------------------------------------------------------------'
1208	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
1209	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
1210	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
1211	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
1212	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
1213	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
1214	endif
1215	endif ! end of 'enertest'
1216
1217	endif ! of if (callrad)
1218
1219
1220	! --------------------------------------------
1221	! III. Vertical diffusion (turbulent mixing) :
1222	! --------------------------------------------
1223
1224	if (calldifv) then
1225
1226	zflubid(1:ngrid)=fluxrad(1:ngrid)+fluxgrd(1:ngrid)
1227
1228	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
1229	if (UseTurbDiff) then
1230
1231	call turbdiff(ngrid,nlayer,nq,rnat, &
1232	ptimestep,capcal, &
1233	pplay,pplev,zzlay,zzlev,z0, &
1234	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
1235	pdt,pdq,zflubid, &
1236	zdudif,zdvdif,zdtdif,zdtsdif, &
1237	sensibFlux,q2,zdqdif,zdqevap,zdqsdif, &
1238	taux,tauy)
1239
1240	else
1241
1242	zdh(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1243
1244	call vdifc(ngrid,nlayer,nq,rnat,zpopsk, &
1245	ptimestep,capcal,lwrite, &
1246	pplay,pplev,zzlay,zzlev,z0, &
1247	pu,pv,zh,pq,tsurf,emis,qsurf, &
1248	zdh,pdq,zflubid, &
1249	zdudif,zdvdif,zdhdif,zdtsdif, &
1250	sensibFlux,q2,zdqdif,zdqsdif)
1251
1252	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1253	zdqevap(1:ngrid,1:nlayer)=0.
1254
1255	end if !end of 'UseTurbDiff'
1256
1257	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+zdtsdif(1:ngrid)
1258
1259	!!! this is always done, except for turbulence-resolving simulations
1260	if (.not. turb_resolved) then
1261	pdv(1:ngrid,1:nlayer)=pdv(1:ngrid,1:nlayer)+zdvdif(1:ngrid,1:nlayer)
1262	pdu(1:ngrid,1:nlayer)=pdu(1:ngrid,1:nlayer)+zdudif(1:ngrid,1:nlayer)
1263	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtdif(1:ngrid,1:nlayer)
1264	endif
1265
1266	if(ok_slab_ocean)then
1267	flux_sens_lat(1:ngrid)=(zdtsdif(1:ngrid)*capcal(1:ngrid)-fluxrad(1:ngrid))
1268	endif
1269
1270	if (tracer) then
1271	pdq(1:ngrid,1:nlayer,1:nq)=pdq(1:ngrid,1:nlayer,1:nq)+ zdqdif(1:ngrid,1:nlayer,1:nq)
1272	dqsurf(1:ngrid,1:nq)=dqsurf(1:ngrid,1:nq) + zdqsdif(1:ngrid,1:nq)
1273	end if ! of if (tracer)
1274
1275
1276	! test energy conservation
1277	!-------------------------
1278	if(enertest)then
1279
1280	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
1281	do ig = 1, ngrid
1282	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
1283	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
1284	enddo
1285
1286	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
1287	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
1288	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
1289	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
1290
1291	if (is_master) then
1292
1293	if (UseTurbDiff) then
1294	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1295	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
1296	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1297	else
1298	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1299	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
1300	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1301	end if
1302	endif ! end of 'is_master'
1303
1304	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
1305	endif ! end of 'enertest'
1306
1307
1308	! Test water conservation.
1309	if(watertest.and.water)then
1310
1311	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
1312	call planetwide_sumval(zdqsdif(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots_tmp)
1313	do ig = 1, ngrid
1314	vdifcncons(ig)=SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_vap))
1315	enddo
1316	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1317	call planetwide_sumval(zdqsdif(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
1318	dWtot = dWtot + dWtot_tmp
1319	dWtots = dWtots + dWtots_tmp
1320	do ig = 1, ngrid
1321	vdifcncons(ig)=vdifcncons(ig) + SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_ice))
1322	enddo
1323	call planetwide_maxval(vdifcncons(:),nconsMAX)
1324
1325	if (is_master) then
1326	print*,'---------------------------------------------------------------'
1327	print*,'In difv atmospheric water change =',dWtot,' kg m-2'
1328	print*,'In difv surface water change =',dWtots,' kg m-2'
1329	print*,'In difv non-cons factor =',dWtot+dWtots,' kg m-2'
1330	print*,'In difv MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
1331	endif
1332
1333	endif ! end of 'watertest'
1334	!-------------------------
1335
1336	else ! calldifv
1337
1338	if(.not.newtonian)then
1339
1340	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + (fluxrad(1:ngrid) + fluxgrd(1:ngrid))/capcal(1:ngrid)
1341
1342	endif
1343
1344	endif ! end of 'calldifv'
1345
1346
1347	!-------------------
1348	! IV. Convection :
1349	!-------------------
1350
1351	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
1352	! IV.a Thermal plume model :
1353	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
1354
1355	IF (calltherm) THEN
1356
1357	! AB: We need to evaporate ice before calling thermcell_main.
1358	IF (water) THEN
1359	CALL evap(ngrid,nlayer,nq,ptimestep,pt,pq,pdq,pdt,dqevap,dtevap,zqtherm,zttherm)
1360	!ALS24 adapats for generic tracer
1361	ELSEIF (generic_condensation .and. .not. water) THEN
1362	DO iq=1,nq
1363	CALL generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
1364	CALL evap_generic(ngrid,nlayer,nq,ptimestep,pt,pq,pdq,pdt,igcm_generic_vap, &
1365	igcm_generic_ice,dqevap,dtevap,zqtherm,zttherm)
1366	ENDDO
1367	ELSE
1368	zttherm(:,:) = pt(:,:) + pdt(:,:) * ptimestep
1369	zqtherm(:,:,:) = pq(:,:,:) + pdq(:,:,:) * ptimestep
1370	ENDIF
1371
1372	CALL thermcell_main(ngrid, nlayer, nq, ptimestep, firstcall, &
1373	pplay, pplev, pphi, zpopsk, &
1374	pu, pv, zttherm, zqtherm, &
1375	zdutherm, zdvtherm, zdttherm, zdqtherm, &
1376	fm, entr, detr, zw2, fraca)
1377
1378	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdutherm(1:ngrid,1:nlayer)
1379	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvtherm(1:ngrid,1:nlayer)
1380	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdttherm(1:ngrid,1:nlayer)
1381
1382	IF (tracer) THEN
1383	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqtherm(1:ngrid,1:nlayer,1:nq)
1384	ENDIF
1385
1386	ENDIF ! end of 'calltherm'
1387
1388	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1389	! IV.b Dry convective adjustment :
1390	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1391
1392	if(calladj) then
1393
1394	zdh(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1395	zduadj(1:ngrid,1:nlayer)=0.0
1396	zdvadj(1:ngrid,1:nlayer)=0.0
1397	zdhadj(1:ngrid,1:nlayer)=0.0
1398
1399
1400	call convadj(ngrid,nlayer,nq,ptimestep, &
1401	pplay,pplev,zpopsk, &
1402	pu,pv,zh,pq, &
1403	pdu,pdv,zdh,pdq, &
1404	zduadj,zdvadj,zdhadj, &
1405	zdqadj)
1406
1407	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zduadj(1:ngrid,1:nlayer)
1408	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvadj(1:ngrid,1:nlayer)
1409	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
1410	zdtadj(1:ngrid,1:nlayer) = zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1411
1412	if(tracer) then
1413	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqadj(1:ngrid,1:nlayer,1:nq)
1414	end if
1415
1416	! Test energy conservation
1417	if(enertest)then
1418	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
1419	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
1420	endif
1421
1422	! Test water conservation
1423	if(watertest)then
1424	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
1425	do ig = 1, ngrid
1426	cadjncons(ig)=SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_vap))
1427	enddo
1428	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1429	dWtot = dWtot + dWtot_tmp
1430	do ig = 1, ngrid
1431	cadjncons(ig)=cadjncons(ig) + SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_ice))
1432	enddo
1433	call planetwide_maxval(cadjncons(:),nconsMAX)
1434
1435	if (is_master) then
1436	print*,'In convadj atmospheric water change =',dWtot,' kg m-2'
1437	print*,'In convadj MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
1438	endif
1439
1440	endif ! end of 'watertest'
1441
1442	endif ! end of 'calladj'
1443	!----------------------------------------------
1444	! Non orographic Gravity Waves:
1445	!---------------------------------------------
1446	IF (calllott_nonoro) THEN
1447
1448	CALL nonoro_gwd_ran(ngrid,nlayer,ptimestep, &
1449	cpnew, rnew, &
1450	pplay, &
1451	zmax_th, &! max altitude reached by thermals (m)
1452	pt, pu, pv, &
1453	pdt, pdu, pdv, &
1454	zustrhi,zvstrhi, &
1455	d_t_hin, d_u_hin, d_v_hin)
1456
1457	! Update tendencies
1458	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) &
1459	+ d_t_hin(1:ngrid,1:nlayer)
1460	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) &
1461	+ d_u_hin(1:ngrid,1:nlayer)
1462	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) &
1463	+ d_v_hin(1:ngrid,1:nlayer)
1464	print*,'du_nonoro: max ', maxval(d_u_hin), 'min ', minval(d_u_hin)
1465	print*,'dv_nonoro: max ', maxval(d_v_hin), 'min ', minval(d_v_hin)
1466
1467	ENDIF ! of IF (calllott_nonoro)
1468
1469
1470
1471	!-----------------------------------------------
1472	! V. Carbon dioxide condensation-sublimation :
1473	!-----------------------------------------------
1474
1475	if (co2cond) then
1476
1477	if (.not.tracer) then
1478	print*,'We need a CO2 ice tracer to condense CO2'
1479	call abort
1480	endif
1481	call condense_co2(ngrid,nlayer,nq,ptimestep, &
1482	capcal,pplay,pplev,tsurf,pt, &
1483	pdt,zdtsurf,pq,pdq, &
1484	qsurf,zdqsurfc,albedo,emis, &
1485	albedo_bareground,albedo_co2_ice_SPECTV, &
1486	zdtc,zdtsurfc,pdpsrf,zdqc)
1487
1488	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtc(1:ngrid,1:nlayer)
1489	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfc(1:ngrid)
1490
1491	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+ zdqc(1:ngrid,1:nlayer,1:nq)
1492	dqsurf(1:ngrid,igcm_co2_ice) = dqsurf(1:ngrid,igcm_co2_ice) + zdqsurfc(1:ngrid)
1493
1494
1495	! test energy conservation
1496	if(enertest)then
1497	call planetwide_sumval(cppmassarea(:,:)zdtc(:,:)/totarea_planet,dEtot)
1498	call planetwide_sumval(capcal(:)zdtsurfc(:)cell_area(:)/totarea_planet,dEtots)
1499	if (is_master) then
1500	print*,'In co2cloud atmospheric energy change =',dEtot,' W m-2'
1501	print*,'In co2cloud surface energy change =',dEtots,' W m-2'
1502	endif
1503	endif
1504
1505	endif ! end of 'co2cond'
1506
1507
1508	!---------------------------------------------
1509	! VI. Specific parameterizations for tracers
1510	!---------------------------------------------
1511
1512	if (tracer) then
1513
1514	! -----------------------------------------------------
1515	! VI.0. Volcanoes injecting tracers in the atmosphere
1516	! -----------------------------------------------------
1517	if (callvolcano) then
1518	call volcano(ngrid,nlayer,pplev,pu,pv,pt,zdqvolc,nq,massarea,&
1519	zday,ptimestep)
1520	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + &
1521	zdqvolc(1:ngrid,1:nlayer,1:nq)
1522	endif
1523
1524	! ---------------------
1525	! VI.1. Water and ice
1526	! ---------------------
1527	if (water) then
1528
1529	! Water ice condensation in the atmosphere
1530	if(watercond.and.(RLVTT.gt.1.e-8))then
1531
1532	if ((.not.calltherm).and.moistadjustment) then
1533	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
1534	dtmoist(1:ngrid,1:nlayer)=0.
1535
1536	! Moist Convective Adjustment.
1537	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1538
1539	call moistadj(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
1540
1541	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
1542	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap)
1543	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
1544	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_ice)
1545	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
1546
1547	! Test energy conservation.
1548	if(enertest)then
1549	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
1550	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
1551	call planetwide_minval(dtmoist(:,:),dtmoist_min)
1552	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
1553
1554	do ig=1,ngrid
1555	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
1556	enddo
1557
1558	if (is_master) then
1559	print*,'In moistadj atmospheric energy change =',dEtot,' W m-2'
1560	print,'In moistadj MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
1561	print,'In moistadj MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
1562	endif
1563
1564	call planetwide_sumval(massarea(:,:)dqmoist(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
1565	massarea(:,:)dqmoist(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1566	if (is_master) print*,'In moistadj atmospheric water change =',dWtot,' kg m-2'
1567
1568	endif ! end of 'enertest'
1569	else
1570	! rneb_man, dqmoist are output of moistadj, but used later on
1571	! so set them to zero if moistadj is not called
1572	rneb_man(:,:)=0
1573	dqmoist(:,:,:)=0
1574	endif ! end of '(.not.calltherm).and.moistadjustment'
1575
1576	! Large scale condensation/evaporation.
1577	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1578	call largescale(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pq,pdt,pdq,dtlscale,dqvaplscale,dqcldlscale,rneb_lsc)
1579
1580	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtlscale(1:ngrid,1:nlayer)
1581	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap)+dqvaplscale(1:ngrid,1:nlayer)
1582	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice)+dqcldlscale(1:ngrid,1:nlayer)
1583
1584	! Test energy conservation.
1585	if(enertest)then
1586	lscaledEz(:,:) = cppmass(:,:)dtlscale(:,:)
1587	do ig=1,ngrid
1588	lscaledE(ig) = cppSUM(mass(:,:)dtlscale(:,:))
1589	enddo
1590	call planetwide_sumval(cppmassarea(:,:)dtlscale(:,:)/totarea_planet,dEtot)
1591
1592	if (is_master) print*,'In largescale atmospheric energy change =',dEtot,' W m-2'
1593
1594	! Test water conservation.
1595	call planetwide_sumval(massarea(:,:)dqvaplscale(:,:)ptimestep/totarea_planet+ &
1596	SUM(massarea(:,:)dqcldlscale(:,:))ptimestep/totarea_planet,dWtot)
1597
1598	if (is_master) print*,'In largescale atmospheric water change =',dWtot,' kg m-2'
1599	endif ! end of 'enertest'
1600
1601	! Compute cloud fraction.
1602	do l = 1, nlayer
1603	do ig=1,ngrid
1604	cloudfrac(ig,l)=MAX(rneb_lsc(ig,l),rneb_man(ig,l))
1605	enddo
1606	enddo
1607
1608	endif ! end of 'watercond'
1609
1610	! Water ice / liquid precipitation.
1611	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1612	zdqrain(1:ngrid,1:nlayer,1:nq) = 0.0 !JL18 need to do that everytimestep if mass redis is on.
1613
1614	if(waterrain)then
1615
1616	zdqsrain(1:ngrid) = 0.0
1617	zdqssnow(1:ngrid) = 0.0
1618
1619	call rain(ngrid,nlayer,nq,ptimestep,pplev,pplay,pphi,pt,pdt,pq,pdq, &
1620	zdtrain,zdqrain,zdqsrain,zdqssnow,reevap_precip,cloudfrac)
1621
1622	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
1623	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
1624	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
1625	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
1626	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain(1:ngrid,1:nlayer)
1627
1628	dqsurf(1:ngrid,igcm_h2o_vap) = dqsurf(1:ngrid,igcm_h2o_vap)+zdqsrain(1:ngrid)
1629	dqsurf(1:ngrid,igcm_h2o_ice) = dqsurf(1:ngrid,igcm_h2o_ice)+zdqssnow(1:ngrid)
1630
1631	! Test energy conservation.
1632	if(enertest)then
1633
1634	call planetwide_sumval(cppmassarea(:,:)zdtrain(:,:)/totarea_planet,dEtot)
1635	if (is_master) print*,'In rain atmospheric T energy change =',dEtot,' W m-2'
1636	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
1637	call planetwide_sumval(cell_area(:)zdqssnow(:)/totarea_planetRLVTT/cpp,dItot)
1638	dItot = dItot + dItot_tmp
1639	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dVtot_tmp)
1640	call planetwide_sumval(cell_area(:)zdqsrain(:)/totarea_planetRLVTT/cpp,dVtot)
1641	dVtot = dVtot + dVtot_tmp
1642	dEtot = dItot + dVtot
1643
1644	if (is_master) then
1645	print*,'In rain dItot =',dItot,' W m-2'
1646	print*,'In rain dVtot =',dVtot,' W m-2'
1647	print*,'In rain atmospheric L energy change =',dEtot,' W m-2'
1648	endif
1649
1650	! Test water conservation
1651	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
1652	massarea(:,:)zdqrain(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1653	call planetwide_sumval((zdqsrain(:)+zdqssnow(:))cell_area(:)ptimestep/totarea_planet,dWtots)
1654
1655	if (is_master) then
1656	print*,'In rain atmospheric water change =',dWtot,' kg m-2'
1657	print*,'In rain surface water change =',dWtots,' kg m-2'
1658	print*,'In rain non-cons factor =',dWtot+dWtots,' kg m-2'
1659	endif
1660
1661	endif ! end of 'enertest'
1662
1663	end if ! enf of 'waterrain'
1664
1665	end if ! end of 'water'
1666
1667	! -------------------------
1668	! VI.2. Photochemistry
1669	! -------------------------
1670
1671	#ifndef MESOSCALE
1672	IF (photochem) then
1673
1674	DO ig=1,ngrid
1675	array_zero1(ig)=0.0
1676	DO l=1,nlayer
1677	array_zero2(ig,l)=0.
1678	ENDDO
1679	ENDDO
1680
1681	call calchim_asis(ngrid,nlayer,nq, &
1682	ptimestep,pplay,pplev,pt,pdt,dist_star,mu0, &
1683	fract,zzlev,zzlay,zday,pq,pdq,zdqchim,zdqschim, &
1684	array_zero1,array_zero1, &
1685	pu,pdu,pv,pdv,array_zero2,array_zero2,icount,zdtchim)
1686
1687	! increment values of tracers:
1688	iesp = 0
1689	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
1690	! tracers is zero anyways
1691	! September 2020: flag is_chim to increment only on chemical species
1692	IF (is_chim(iq)==1) THEN
1693	iesp = iesp + 1
1694	DO l=1,nlayer
1695	DO ig=1,ngrid
1696	pdq(ig,l,iq)=pdq(ig,l,iq)+zdqchim(ig,l,iesp)
1697	ENDDO
1698	ENDDO
1699	ENDIF
1700	ENDDO ! of DO iq=1,nq
1701
1702
1703	! increment surface values of tracers:
1704	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
1705	! tracers is zero anyways
1706	DO ig=1,ngrid
1707	! dqsurf(ig,iq)=dqsurf(ig,iq)+zdqschim(ig,iq)
1708	ENDDO
1709	ENDDO ! of DO iq=1,nq
1710
1711	! increment values of temperature:
1712	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtchim(1:ngrid,1:nlayer)
1713
1714	END IF ! of IF (photochem)
1715	#endif
1716
1717
1718	! ------------------------------------------
1719	! VI.3.a Generic Condensable Species (GCS)
1720	! ------------------------------------------
1721
1722	if (generic_condensation) then
1723	if ((.not.water).and.(.not.calltherm).and.moistadjustment_generic) then
1724	write(,) "moist adjustment for GCS"
1725	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
1726	dtmoist(1:ngrid,1:nlayer)=0.
1727
1728	! Moist Convective Adjustment.
1729	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1730	call moistadj_generic(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
1731
1732	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
1733	+ dqmoist(1:ngrid,1:nlayer,1:nq)
1734	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
1735
1736	! Test energy conservation.
1737	if(enertest)then
1738	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
1739	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
1740	call planetwide_minval(dtmoist(:,:),dtmoist_min)
1741	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
1742
1743	do ig=1,ngrid
1744	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
1745	enddo
1746
1747	if (is_master) then
1748	print*,'In moistadj_generic atmospheric energy change =',dEtot,' W m-2'
1749	print,'In moistadj_generic MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
1750	print,'In moistadj_generic MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
1751	endif
1752
1753	! igcm_generic_vap & igcm_generic_ice are not declared below
1754	call planetwide_sumval(massarea(:,:)dqmoist(:,:,1)ptimestep/totarea_planet+ &
1755	massarea(:,:)dqmoist(:,:,2)ptimestep/totarea_planet,dWtot)
1756	if (is_master) print*,'In moistadj_generic atmospheric GCS change =',dWtot,' kg m-2'
1757
1758	endif ! end of 'enertest'
1759	else
1760	! rneb_man, dqmoist are output of moistadj, but used later on
1761	! so set them to zero if moistadj is not called
1762	rneb_man(:,:)=0
1763	dqmoist(:,:,:)=0
1764	endif ! end of '(.not.calltherm).and.moistadjustment_generic'
1765
1766	call condensation_generic(ngrid,nlayer,nq,ptimestep,pplev,pplay, &
1767	pt,pq,pdt,pdq,dt_generic_condensation, &
1768	dqvaplscale_generic,dqcldlscale_generic,rneb_generic)
1769	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dt_generic_condensation(1:ngrid,1:nlayer)
1770	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+dqvaplscale_generic(1:ngrid,1:nlayer,1:nq)
1771	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+dqcldlscale_generic(1:ngrid,1:nlayer,1:nq)
1772
1773	if(enertest)then
1774	do ig=1,ngrid
1775	genericconddE(ig) = cppSUM(mass(:,:)dt_generic_condensation(:,:))
1776	enddo
1777
1778	call planetwide_sumval(cppmassarea(:,:)dt_generic_condensation(:,:)/totarea_planet,dEtot)
1779
1780	if (is_master) print*,'In generic condensation atmospheric energy change =',dEtot,' W m-2'
1781	end if
1782
1783	if (.not. water) then
1784	! Compute GCS (Generic Condensable Specie) cloud fraction. For now we can not have both water cloud fraction and GCS cloud fraction
1785	! Water is the priority
1786	! If you have set water and generic_condensation, then cloudfrac will be water cloudfrac
1787	!
1788	! If you have set generic_condensation (and not water) and you have set several GCS
1789	! then cloudfrac will be only the cloudfrac of the last generic tracer
1790	! (Because it is rewritten every tracer in the loop)
1791	!
1792	! Maybe one should create a cloudfrac_generic(ngrid,nlayer,nq) with 3 dimensions, the last one for tracers
1793
1794	! Let's loop on tracers
1795	cloudfrac(:,:)=0.0
1796	do iq=1,nq
1797	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
1798	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
1799	do l = 1, nlayer
1800	do ig=1,ngrid
1801	cloudfrac(ig,l)=rneb_generic(ig,l,iq)
1802	enddo
1803	enddo
1804	endif
1805	end do ! do iq=1,nq loop on tracers
1806	endif ! .not. water
1807
1808	endif !generic_condensation
1809
1810	!Generic Rain
1811
1812	if (generic_rain) then
1813
1814	zdqsrain_generic(1:ngrid,1:nq) = 0.0
1815	zdqssnow_generic(1:ngrid,1:nq) = 0.0
1816
1817	call rain_generic(ngrid,nlayer,nq,ptimestep,pplev,pplay,pphi,pt,pdt,pq,pdq, &
1818	zdtrain_generic,dq_rain_generic_vap,dq_rain_generic_cld, &
1819	zdqsrain_generic,zdqssnow_generic,reevap_precip_generic,cloudfrac)
1820
1821	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
1822	+ dq_rain_generic_vap(1:ngrid,1:nlayer,1:nq)
1823	! only the parts with indexes of generic vapor tracers are filled in dq_rain_generic_vap, other parts are 0.
1824	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
1825	+ dq_rain_generic_cld(1:ngrid,1:nlayer,1:nq)
1826	! only the parts with indexes of generic ice(cloud) tracers are filled in dq_rain_generic_cld, other parts are 0.
1827
1828	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain_generic(1:ngrid,1:nlayer)
1829
1830	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq)+zdqsrain_generic(1:ngrid,1:nq)
1831
1832	! Test energy conservation.
1833	if(enertest)then
1834
1835	call planetwide_sumval(cppmassarea(:,:)zdtrain_generic(:,:)/totarea_planet,dEtot)
1836	if (is_master) print*,'In rain_generic atmospheric T energy change =',dEtot,' W m-2'
1837
1838	! Test conservationfor each generic condensable specie (GCS) tracer
1839
1840	! Let's loop on tracers
1841
1842	do iq=1,nq
1843
1844	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
1845
1846	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
1847
1848	call planetwide_sumval(massarea(:,:)dq_rain_generic_cld(:,:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
1849	call planetwide_sumval(cell_area(:)zdqssnow_generic(:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dItot)
1850	dItot = dItot + dItot_tmp
1851	call planetwide_sumval(massarea(:,:)dq_rain_generic_vap(:,:,igcm_generic_vap)/totarea_planetRLVTT/cpp,dVtot_tmp)
1852	call planetwide_sumval(cell_area(:)zdqsrain_generic(:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dVtot)
1853	dVtot = dVtot + dVtot_tmp
1854	dEtot = dItot + dVtot
1855
1856	if (is_master) then
1857	print*,'In rain_generic dItot =',dItot,' W m-2'
1858	print*,'In rain_generic dVtot =',dVtot,' W m-2'
1859	print*,'In rain_generic atmospheric L energy change =',dEtot,' W m-2'
1860	endif
1861
1862	call planetwide_sumval(massarea(:,:)dq_rain_generic_vap(:,:,igcm_generic_vap)ptimestep/totarea_planet+ &
1863	massarea(:,:)dq_rain_generic_cld(:,:,igcm_generic_ice)ptimestep/totarea_planet,dWtot)
1864	call planetwide_sumval((zdqsrain_generic(:,igcm_generic_ice)+zdqssnow_generic(:,igcm_generic_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
1865
1866	if (is_master) then
1867	print*,'In rain_generic atmospheric generic tracer change =',dWtot,' kg m-2'
1868	print*,'In rain_generic surface generic tracer change =',dWtots,' kg m-2'
1869	print*,'In rain_generic non-cons factor =',dWtot+dWtots,' kg m-2'
1870	endif
1871
1872	endif
1873
1874	end do ! do iq=1,nq loop on tracers
1875
1876	endif ! end of 'enertest'
1877
1878	endif !generic_rain
1879
1880	! -------------------------
1881	! VI.3.b. Sedimentation.
1882	! -------------------------
1883	if (sedimentation) then
1884
1885	zdqsed(1:ngrid,1:nlayer,1:nq) = 0.0
1886	zdqssed(1:ngrid,1:nq) = 0.0
1887
1888	if(watertest)then
1889
1890	iq=igcm_h2o_ice
1891	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
1892	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
1893	if (is_master) then
1894	print*,'Before sedim pq =',dWtot,' kg m-2'
1895	print*,'Before sedim pdq =',dWtots,' kg m-2'
1896	endif
1897	endif
1898
1899	call callsedim(ngrid,nlayer,ptimestep, &
1900	pplev,zzlev,pt,pdt,pq,pdq, &
1901	zdqsed,zdqssed,nq)
1902
1903	if(watertest)then
1904	iq=igcm_h2o_ice
1905	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
1906	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
1907	if (is_master) then
1908	print*,'After sedim pq =',dWtot,' kg m-2'
1909	print*,'After sedim pdq =',dWtots,' kg m-2'
1910	endif
1911	endif
1912
1913	! Whether it falls as rain or snow depends only on the surface temperature
1914	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqsed(1:ngrid,1:nlayer,1:nq)
1915	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqssed(1:ngrid,1:nq)
1916
1917	! Test water conservation
1918	if(watertest)then
1919	call planetwide_sumval(massarea(:,:)(zdqsed(:,:,igcm_h2o_vap)+zdqsed(:,:,igcm_h2o_ice))ptimestep/totarea_planet,dWtot)
1920	call planetwide_sumval((zdqssed(:,igcm_h2o_vap)+zdqssed(:,igcm_h2o_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
1921	if (is_master) then
1922	print*,'In sedim atmospheric ice change =',dWtot,' kg m-2'
1923	print*,'In sedim surface ice change =',dWtots,' kg m-2'
1924	print*,'In sedim non-cons factor =',dWtot+dWtots,' kg m-2'
1925	endif
1926	endif
1927
1928	end if ! end of 'sedimentation'
1929
1930
1931	! ---------------
1932	! VI.4. Updates
1933	! ---------------
1934
1935	! Updating Atmospheric Mass and Tracers budgets.
1936	if(mass_redistrib) then
1937
1938	zdmassmr(1:ngrid,1:nlayer) = mass(1:ngrid,1:nlayer) * &
1939	( zdqevap(1:ngrid,1:nlayer) &
1940	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap) &
1941	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap) &
1942	+ dqvaplscale(1:ngrid,1:nlayer) )
1943
1944	do ig = 1, ngrid
1945	zdmassmr_col(ig)=SUM(zdmassmr(ig,1:nlayer))
1946	enddo
1947
1948	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
1949	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
1950	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
1951
1952	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
1953	rnat,capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
1954	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
1955	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
1956
1957	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqmr(1:ngrid,1:nlayer,1:nq)
1958	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqsurfmr(1:ngrid,1:nq)
1959	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdtmr(1:ngrid,1:nlayer)
1960	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdumr(1:ngrid,1:nlayer)
1961	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvmr(1:ngrid,1:nlayer)
1962	pdpsrf(1:ngrid) = pdpsrf(1:ngrid) + zdpsrfmr(1:ngrid)
1963	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfmr(1:ngrid)
1964
1965	endif
1966
1967
1968	! ------------------
1969	! VI.5. Slab Ocean
1970	! ------------------
1971
1972	if (ok_slab_ocean)then
1973
1974	do ig=1,ngrid
1975	qsurfint(:,igcm_h2o_ice)=qsurf(:,igcm_h2o_ice)
1976	enddo
1977
1978	!! These two commented functions are from BC2014 (only kept for record)
1979	!!
1980	!! call ocean_slab_ice(ptimestep, &
1981	!! ngrid, knindex, tsea_ice, fluxrad, &
1982	!! zdqssnow, qsurf(:,igcm_h2o_ice), &
1983	!! - zdqsdif(:,igcm_h2o_vap), &
1984	!! flux_sens_lat,tsea_ice, pctsrf_sic, &
1985	!! taux,tauy,icount)
1986	!! call ocean_slab_get_vars(ngrid,tslab, &
1987	!! sea_ice, flux_o, &
1988	!! flux_g, dt_hdiff, &
1989	!! dt_ekman)
1990
1991	call ocean_slab_noice(icount, ptimestep, knon, knindex, &
1992	zdqssnow, tsea_ice, &
1993	fluxrad, qsurf(:,igcm_h2o_ice), flux_sens_lat, &
1994	tsea_ice, taux, tauy, zmasq)
1995
1996	call ocean_slab_ice(icount, ptimestep, knon, knindex, &
1997	zdqssnow, tsea_ice, &
1998	fluxrad, qsurf(:,igcm_h2o_ice), flux_sens_lat, &
1999	tsea_ice, -zdqsdif(:,igcm_h2o_vap), taux, tauy, zmasq)
2000
2001	call ocean_slab_frac(pctsrf_sic, zmasq)
2002
2003	call ocean_slab_get_vars(ngrid, tslab, tice, sea_ice, flux_g, &
2004	dt_hdiff, dt_ekman, dt_gm)
2005
2006	!!! call ocean_slab_get_vars(ngrid, tslab, tsea_ice, sea_ice, flux_g, &
2007	!!! dt_hdiff, dt_ekman, dt_gm)
2008
2009	!! sea_ice defines the sea ice thickness in kg/m2
2010	!! pctsrf_sic defines the percentage of the oceanic grid that is covered by sea ice (between 0 and almost 1)
2011	!! qsurf(:,igcm_h2o_ice) defines the amount of snow that accumulates on top of the sea ice (in kg/m2) ; note that the snow fraction depends on the amount of snow.
2012	!! therefore, beware that qsurf(:,igcm_h2o_ice) has its own meaning for oceanic grid points (when ok_slab_ocean activated)
2013
2014
2015	do ig=1,ngrid
2016	if (nint(rnat(ig)).eq.1)then
2017	tslab(ig,1) = 0.
2018	tslab(ig,2) = 0.
2019	tsea_ice(ig) = 0.
2020	! tice(ig) = 0.
2021	sea_ice(ig) = 0.
2022	pctsrf_sic(ig) = 0.
2023	qsurf(ig,igcm_h2o_ice) = qsurfint(ig,igcm_h2o_ice)
2024	endif
2025	enddo
2026
2027	endif ! end of 'ok_slab_ocean'
2028
2029
2030	! -----------------------------
2031	! VI.6. Surface Tracer Update
2032	! -----------------------------
2033
2034	if(hydrology)then
2035
2036	call hydrol(ngrid,nq,ptimestep,rnat,tsurf,qsurf,dqsurf,dqs_hyd, &
2037	capcal,albedo,albedo_bareground, &
2038	albedo_snow_SPECTV,albedo_co2_ice_SPECTV, &
2039	mu0,zdtsurf,zdtsurf_hyd,hice,pctsrf_sic, &
2040	sea_ice)
2041
2042	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurf_hyd(1:ngrid)
2043	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + dqs_hyd(1:ngrid,1:nq)
2044
2045
2046	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
2047
2048	! Test energy conservation
2049	if(enertest)then
2050	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf_hyd(:)/totarea_planet,dEtots)
2051	if (is_master) print*,'In hydrol surface energy change =',dEtots,' W m-2'
2052	endif
2053
2054	! test water conservation
2055	if(watertest)then
2056	call planetwide_sumval(dqs_hyd(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
2057	if (is_master) print*,'In hydrol surface ice change =',dWtots,' kg m-2'
2058	call planetwide_sumval(dqs_hyd(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots)
2059	if (is_master) then
2060	print*,'In hydrol surface water change =',dWtots,' kg m-2'
2061	print*,'---------------------------------------------------------------'
2062	endif
2063	endif
2064
2065	else ! of if (hydrology)
2066
2067	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
2068
2069	end if ! of if (hydrology)
2070
2071	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
2072	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
2073	qsurf_hist(:,:) = qsurf(:,:)
2074
2075	! -----------------------------
2076	! VI.7. Radioactive Tracers
2077	! -----------------------------
2078
2079	call radioactive_tracers(ngrid,nlayer,nq,ptimestep,pq,zdqradio)
2080	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqradio(1:ngrid,1:nlayer,1:nq)
2081
2082	endif! end of if 'tracer'
2083
2084
2085	!------------------------------------------------
2086	! VII. Surface and sub-surface soil temperature
2087	!------------------------------------------------
2088
2089
2090	! Increment surface temperature
2091	if(ok_slab_ocean)then
2092	do ig=1,ngrid
2093	if (nint(rnat(ig)).eq.0)then
2094	zdtsurf(ig)= (tslab(ig,1) &
2095	+ pctsrf_sic(ig)*(tsea_ice(ig)-tslab(ig,1))-tsurf(ig))/ptimestep
2096	endif
2097	tsurf(ig)=tsurf(ig)+ptimestep*zdtsurf(ig)
2098	enddo
2099
2100	else
2101	tsurf(1:ngrid)=tsurf(1:ngrid)+ptimestep*zdtsurf(1:ngrid)
2102	endif ! end of 'ok_slab_ocean'
2103
2104
2105	! Compute soil temperatures and subsurface heat flux.
2106	if (callsoil) then
2107	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
2108	ptimestep,tsurf,tsoil,capcal,fluxgrd)
2109	endif
2110
2111
2112	if (ok_slab_ocean) then
2113
2114	do ig=1,ngrid
2115
2116	fluxgrdocean(ig)=fluxgrd(ig)
2117	if (nint(rnat(ig)).eq.0) then
2118	capcal(ig)=capcalocean
2119	fluxgrd(ig)=0.
2120	!! fluxgrdocean(ig)=pctsrf_sic(ig)flux_g(ig)+(1-pctsrf_sic(ig))(dt_hdiff(ig,1)+dt_ekman(ig,1))
2121	! Dividing by cell area to have flux in W/m2
2122	fluxgrdocean(ig)=flux_g(ig)+(1-pctsrf_sic(ig))*(dt_hdiff(ig,1)+dt_ekman(ig,1)+dt_gm(ig,1))/cell_area(ig)
2123	! fluxgrdocean(ig)=(flux_g(ig)-fluxabs_sw(ig))+(1-pctsrf_sic(ig))*(dt_hdiff(ig,1)+dt_ekman(ig,1)+dt_gm(ig,1))/cell_area(ig)
2124	do iq=1,nsoilmx
2125	tsoil(ig,iq)=tsurf(ig)
2126	enddo
2127	if (pctsrf_sic(ig).gt.0.5) then
2128	capcal(ig)=capcalseaice
2129	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
2130	capcal(ig)=capcalsno
2131	endif
2132	endif
2133	endif
2134
2135	enddo
2136
2137	endif !end of 'ok_slab_ocean'
2138
2139
2140	! Test energy conservation
2141	if(enertest)then
2142	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
2143	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
2144	endif
2145
2146
2147	!---------------------------------------------------
2148	! VIII. Perform diagnostics and write output files
2149	!---------------------------------------------------
2150
2151	! Note : For output only: the actual model integration is performed in the dynamics.
2152
2153
2154
2155	! Temperature, zonal and meridional winds.
2156	zt(1:ngrid,1:nlayer) = pt(1:ngrid,1:nlayer) + pdt(1:ngrid,1:nlayer)*ptimestep
2157	zu(1:ngrid,1:nlayer) = pu(1:ngrid,1:nlayer) + pdu(1:ngrid,1:nlayer)*ptimestep
2158	zv(1:ngrid,1:nlayer) = pv(1:ngrid,1:nlayer) + pdv(1:ngrid,1:nlayer)*ptimestep
2159
2160	! Recast thermal plume vertical velocity array for outputs
2161	IF (calltherm) THEN
2162	DO ig=1,ngrid
2163	DO l=1,nlayer
2164	zw2_bis(ig,l) = zw2(ig,l)
2165	fm_bis(ig,l) = fm(ig,l)
2166	ENDDO
2167	ENDDO
2168	ENDIF
2169
2170	! Diagnostic.
2171	zdtdyn(1:ngrid,1:nlayer) = (pt(1:ngrid,1:nlayer)-ztprevious(1:ngrid,1:nlayer)) / ptimestep
2172	ztprevious(1:ngrid,1:nlayer) = zt(1:ngrid,1:nlayer)
2173
2174	zdudyn(1:ngrid,1:nlayer) = (pu(1:ngrid,1:nlayer)-zuprevious(1:ngrid,1:nlayer)) / ptimestep
2175	zuprevious(1:ngrid,1:nlayer) = zu(1:ngrid,1:nlayer)
2176
2177	if(firstcall)then
2178	zdtdyn(1:ngrid,1:nlayer)=0.0
2179	zdudyn(1:ngrid,1:nlayer)=0.0
2180	endif
2181
2182	! Dynamical heating diagnostic.
2183	do ig=1,ngrid
2184	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
2185	enddo
2186
2187	! Tracers.
2188	zq(1:ngrid,1:nlayer,1:nq) = pq(1:ngrid,1:nlayer,1:nq) + pdq(1:ngrid,1:nlayer,1:nq)*ptimestep
2189
2190	! Surface pressure.
2191	ps(1:ngrid) = pplev(1:ngrid,1) + pdpsrf(1:ngrid)*ptimestep
2192
2193
2194
2195	! Surface and soil temperature information
2196	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
2197	call planetwide_minval(tsurf(:),Ts2)
2198	call planetwide_maxval(tsurf(:),Ts3)
2199	if(callsoil)then
2200	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
2201	if (is_master) then
2202	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
2203	print*,Ts1,Ts2,Ts3,TsS
2204	end if
2205	else
2206	if (is_master) then
2207	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
2208	print*,Ts1,Ts2,Ts3
2209	endif
2210	end if
2211
2212
2213	! Check the energy balance of the simulation during the run
2214	if(corrk)then
2215
2216	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
2217	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
2218	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
2219	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
2220	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
2221	do ig=1,ngrid
2222	if(fluxtop_dn(ig).lt.0.0)then
2223	print*,'fluxtop_dn has gone crazy'
2224	print*,'fluxtop_dn=',fluxtop_dn(ig)
2225	print*,'tau_col=',tau_col(ig)
2226	print*,'aerosol=',aerosol(ig,:,:)
2227	print*,'temp= ',pt(ig,:)
2228	print*,'pplay= ',pplay(ig,:)
2229	call abort
2230	endif
2231	end do
2232
2233	if(ngrid.eq.1)then
2234	DYN=0.0
2235	endif
2236
2237	if (is_master) then
2238	print*,' ISR ASR OLR GND DYN [W m^-2]'
2239	print*, ISR,ASR,OLR,GND,DYN
2240	endif
2241
2242	if(enertest .and. is_master)then
2243	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
2244	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
2245	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
2246	endif
2247
2248	if(meanOLR .and. is_master)then
2249	if((ngrid.gt.1) .or. (mod(icount-1,diagfi_output_rate).eq.0))then
2250	! to record global radiative balance
2251	open(92,file="rad_bal.out",form='formatted',position='append')
2252	write(92,*) zday,ISR,ASR,OLR
2253	close(92)
2254	open(93,file="tem_bal.out",form='formatted',position='append')
2255	if(callsoil)then
2256	write(93,*) zday,Ts1,Ts2,Ts3,TsS
2257	else
2258	write(93,*) zday,Ts1,Ts2,Ts3
2259	endif
2260	close(93)
2261	endif
2262	endif
2263
2264	endif ! end of 'corrk'
2265
2266
2267	! Diagnostic to test radiative-convective timescales in code.
2268	if(testradtimes)then
2269	open(38,file="tau_phys.out",form='formatted',position='append')
2270	ig=1
2271	do l=1,nlayer
2272	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
2273	enddo
2274	close(38)
2275	print*,'As testradtimes enabled,'
2276	print*,'exiting physics on first call'
2277	call abort
2278	endif
2279
2280
2281	! Compute column amounts (kg m-2) if tracers are enabled.
2282	if(tracer)then
2283	qcol(1:ngrid,1:nq)=0.0
2284	do iq=1,nq
2285	do ig=1,ngrid
2286	qcol(ig,iq) = SUM( zq(ig,1:nlayer,iq) * mass(ig,1:nlayer))
2287	enddo
2288	enddo
2289
2290	! Generalised for arbitrary aerosols now. By LK
2291	reffcol(1:ngrid,1:naerkind)=0.0
2292	if(co2cond.and.(iaero_co2.ne.0))then
2293	call co2_reffrad(ngrid,nlayer,nq,zq,reffrad(1,1,iaero_co2))
2294	do ig=1,ngrid
2295	reffcol(ig,iaero_co2) = SUM(zq(ig,1:nlayer,igcm_co2_ice)reffrad(ig,1:nlayer,iaero_co2)mass(ig,1:nlayer))
2296	enddo
2297	endif
2298	if(water.and.(iaero_h2o.ne.0))then
2299	call h2o_reffrad(ngrid,nlayer,zq(1,1,igcm_h2o_ice),zt, &
2300	reffrad(1,1,iaero_h2o),nueffrad(1,1,iaero_h2o))
2301	do ig=1,ngrid
2302	reffcol(ig,iaero_h2o) = SUM(zq(ig,1:nlayer,igcm_h2o_ice)reffrad(ig,1:nlayer,iaero_h2o)mass(ig,1:nlayer))
2303	enddo
2304	endif
2305
2306	endif ! end of 'tracer'
2307
2308
2309	! Test for water conservation.
2310	if(water)then
2311
2312	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_ice)/totarea_planet,icesrf)
2313	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_vap)/totarea_planet,liqsrf)
2314	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_ice)/totarea_planet,icecol)
2315	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_vap)/totarea_planet,vapcol)
2316
2317	h2otot = icesrf + liqsrf + icecol + vapcol
2318
2319	if (is_master) then
2320	print*,' Total water amount [kg m^-2]: ',h2otot
2321	print*,' Surface ice Surface liq. Atmos. con. Atmos. vap. [kg m^-2] '
2322	print*, icesrf,liqsrf,icecol,vapcol
2323	endif
2324
2325	if(meanOLR .and. is_master)then
2326	if((ngrid.gt.1) .or. (mod(icount-1,diagfi_output_rate).eq.0))then
2327	! to record global water balance
2328	open(98,file="h2o_bal.out",form='formatted',position='append')
2329	write(98,*) zday,icesrf,liqsrf,icecol,vapcol
2330	close(98)
2331	endif
2332	endif
2333
2334	endif
2335
2336
2337	! Calculate RH (Relative Humidity) for diagnostic.
2338	if(water)then
2339
2340	do l = 1, nlayer
2341	do ig=1,ngrid
2342	call Psat_water(zt(ig,l),pplay(ig,l),psat_tmp,qsat(ig,l))
2343	RH(ig,l) = zq(ig,l,igcm_h2o_vap) / qsat(ig,l)
2344	enddo
2345	enddo
2346
2347	! Compute maximum possible H2O column amount (100% saturation).
2348	do ig=1,ngrid
2349	H2Omaxcol(ig) = SUM( qsat(ig,:) * mass(ig,:))
2350	enddo
2351
2352	endif ! end of 'water'
2353
2354	! Calculate RH_generic (Generic Relative Humidity) for diagnostic.
2355	if(generic_condensation)then
2356	RH_generic(:,:,:)=0.0
2357	do iq=1,nq
2358
2359	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
2360
2361	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
2362
2363	do l = 1, nlayer
2364	do ig=1,ngrid
2365	call Psat_generic(zt(ig,l),pplay(ig,l),metallicity,psat_tmp_generic,qsat_generic(ig,l,iq))
2366	RH_generic(ig,l,iq) = zq(ig,l,igcm_generic_vap) / qsat_generic(ig,l,iq)
2367	enddo
2368	enddo
2369
2370	end if
2371
2372	end do ! iq=1,nq
2373
2374	endif ! end of 'generic_condensation'
2375
2376
2377	if (is_master) print,'--> Ls =',zls180./pi
2378
2379
2380	! -------------------------
2381	! IX. Thermosphere
2382	! -------------------------
2383	if (callthermos) then
2384	call conduction(ngrid,nlayer,nq,ptimestep,pplay,pplev, &
2385	pt,tsurf,zzlev,zzlay,muvar,pq,firstcall,zdtconduc)
2386	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtconduc(1:ngrid,1:nlayer)
2387	endif ! of if (callthermos)
2388
2389
2390	!----------------------------------------------------------------------
2391	! Writing NetCDF file "RESTARTFI" at the end of the run
2392	!----------------------------------------------------------------------
2393
2394	! Note: 'restartfi' is stored just before dynamics are stored
2395	! in 'restart'. Between now and the writting of 'restart',
2396	! there will have been the itau=itau+1 instruction and
2397	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
2398	! thus we store for time=time+dtvr
2399
2400
2401
2402	if(lastcall) then
2403	ztime_fin = ptime + (ptimestep/daysec)
2404
2405	#ifndef MESOSCALE
2406
2407	!if (ngrid.ne.1) then
2408	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
2409
2410	if (ok_slab_ocean) then
2411	! fetch "ocean variables" to ensure they are stored
2412	call ocean_slab_get_vars(ngrid, tslab, tice, sea_ice, flux_g, &
2413	dt_hdiff, dt_ekman, dt_gm)
2414	endif
2415
2416	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
2417	ptimestep,ztime_fin, &
2418	tsurf,tsoil,emis,albedo,q2,qsurf_hist, &
2419	cloudfrac,totcloudfrac,hice, &
2420	rnat,pctsrf_sic,tslab,tsea_ice,tice,sea_ice)
2421	!endif
2422	#endif
2423	if(ok_slab_ocean) then
2424	call ocean_slab_final!(tslab, seaice)
2425	end if
2426
2427	endif ! end of 'lastcall'
2428
2429
2430	! -----------------------------------------------------------------
2431	! WSTATS: Saving statistics
2432	! -----------------------------------------------------------------
2433	! ("stats" stores and accumulates key variables in file "stats.nc"
2434	! which can later be used to make the statistic files of the run:
2435	! if flag "callstats" from callphys.def is .true.)
2436
2437
2438	call wstats(ngrid,"ps","Surface pressure","Pa",2,ps)
2439	call wstats(ngrid,"tsurf","Surface temperature","K",2,tsurf)
2440	call wstats(ngrid,"fluxsurf_lw", &
2441	"Thermal IR radiative flux to surface","W.m-2",2, &
2442	fluxsurf_lw)
2443	call wstats(ngrid,"fluxtop_lw", &
2444	"Thermal IR radiative flux to space","W.m-2",2, &
2445	fluxtop_lw)
2446
2447	! call wstats(ngrid,"fluxsurf_sw", &
2448	! "Solar radiative flux to surface","W.m-2",2, &
2449	! fluxsurf_sw_tot)
2450	! call wstats(ngrid,"fluxtop_sw", &
2451	! "Solar radiative flux to space","W.m-2",2, &
2452	! fluxtop_sw_tot)
2453
2454
2455	call wstats(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
2456	call wstats(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
2457	call wstats(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
2458	!call wstats(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
2459	!call wstats(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
2460	call wstats(ngrid,"p","Pressure","Pa",3,pplay)
2461	call wstats(ngrid,"temp","Atmospheric temperature","K",3,zt)
2462	call wstats(ngrid,"u","Zonal (East-West) wind","m.s-1",3,zu)
2463	call wstats(ngrid,"v","Meridional (North-South) wind","m.s-1",3,zv)
2464	call wstats(ngrid,"w","Vertical (down-up) wind","m.s-1",3,pw)
2465	call wstats(ngrid,"q2","Boundary layer eddy kinetic energy","m2.s-2",3,q2)
2466
2467	if (tracer) then
2468	do iq=1,nq
2469	call wstats(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
2470	call wstats(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2471	'kg m^-2',2,qsurf(1,iq) )
2472	call wstats(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
2473	'kg m^-2',2,qcol(1,iq) )
2474
2475	! call wstats(ngrid,trim(noms(iq))//'_reff', &
2476	! trim(noms(iq))//'_reff', &
2477	! 'm',3,reffrad(1,1,iq))
2478
2479	end do
2480
2481	if (water) then
2482	vmr=zq(1:ngrid,1:nlayer,igcm_h2o_vap)*mugaz/mmol(igcm_h2o_vap)
2483	call wstats(ngrid,"vmr_h2ovapor", &
2484	"H2O vapour volume mixing ratio","mol/mol", &
2485	3,vmr)
2486	endif
2487
2488	endif ! end of 'tracer'
2489
2490	if(watercond.and.CLFvarying)then
2491	call wstats(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
2492	call wstats(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
2493	call wstats(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
2494	call wstats(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
2495	call wstats(ngrid,"RH","relative humidity"," ",3,RH)
2496	endif
2497
2498	if (ok_slab_ocean) then
2499	call wstats(ngrid,"dt_hdiff1","dt_hdiff1","W m-2",2,dt_hdiff(:,1))
2500	call wstats(ngrid,"dt_hdiff2","dt_hdiff2","W m-2",2,dt_hdiff(:,2))
2501	call wstats(ngrid,"dt_ekman1","dt_ekman1","W m-2",2,dt_ekman(:,1))
2502	call wstats(ngrid,"dt_ekman2","dt_ekman2","W m-2",2,dt_ekman(:,2))
2503	call wstats(ngrid,"dt_gm1","dt_gm1","W m-2",2,dt_gm(:,1))
2504	call wstats(ngrid,"dt_gm2","dt_gm2","W m-2",2,dt_gm(:,2))
2505	call wstats(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
2506	call wstats(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
2507	call wstats(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
2508	call wstats(ngrid,"tsea_ice","top layer temp, snow/ice","K",2,tsea_ice)
2509	! call wstats(ngrid,"tice","sea ice temperature","K",2,tice)
2510	call wstats(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
2511	call wstats(ngrid,"rnat","nature of the surface","",2,rnat)
2512	endif
2513
2514	if(lastcall.and.callstats) then
2515	write (,) "Writing stats..."
2516	call mkstats(ierr)
2517	endif
2518
2519
2520	#ifndef MESOSCALE
2521
2522	!-----------------------------------------------------------------------------------------------------
2523	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
2524	!
2525	! Note 1 : output with period "diagfi_output_rate", set in "run.def"
2526	!
2527	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
2528	! but its preferable to keep all the calls in one place ...
2529	!-----------------------------------------------------------------------------------------------------
2530
2531	call write_output("Ls","solar longitude","deg",zls*180./pi)
2532	call write_output("Lss","sub solar longitude","deg",zlss*180./pi)
2533	call write_output("RA","right ascension","deg",right_ascen*180./pi)
2534	call write_output("Declin","solar declination","deg",declin*180./pi)
2535	call write_output("dist_star","dist_star","AU",dist_star)
2536
2537	call write_output("tsurf","Surface temperature","K",tsurf)
2538	call write_output("ps","Surface pressure","Pa",ps)
2539	call write_output("emis","Emissivity","",emis)
2540	call write_output("temperature","temperature","K",zt)
2541	call write_output("teta","potential temperature","K",zh)
2542	call write_output("u","Zonal wind","m.s-1",zu)
2543	call write_output("v","Meridional wind","m.s-1",zv)
2544	call write_output("w","Vertical wind","m.s-1",pw)
2545	call write_output("p","Pressure","Pa",pplay)
2546	call write_output("omega","omega","Pa/s",omega)
2547
2548	! Subsurface temperatures
2549	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
2550
2551	! Oceanic layers
2552	if(ok_slab_ocean) then
2553	call write_output("pctsrf_sic","pct ice/sea","",pctsrf_sic)
2554	call write_output("tsea_ice","top layer temp, snow/ice","K",tsea_ice)
2555	! call write_output("tice","sea ice temperature","K",tice)
2556	call write_output("sea_ice","sea ice","kg/m2",sea_ice)
2557	call write_output("tslab1","tslab1","K",tslab(:,1))
2558	call write_output("tslab2","tslab2","K",tslab(:,2))
2559	call write_output("dt_hdiff1","dt_hdiff1","W m-2",dt_hdiff(:,1))
2560	call write_output("dt_hdiff2","dt_hdiff2","W m-2",dt_hdiff(:,2))
2561	call write_output("dt_ekman1","dt_ekman1","W m-2",dt_ekman(:,1))
2562	call write_output("dt_ekman2","dt_ekman2","W m-2",dt_ekman(:,2))
2563	call write_output("dt_gm1","dt_gm1","W m-2",dt_gm(:,1))
2564	call write_output("dt_gm2","dt_gm2","W m-2",dt_gm(:,2))
2565	call write_output("rnat","nature of the surface","",rnat)
2566	call write_output("sensibFlux","sensible heat flux","w.m^-2",sensibFlux)
2567	call write_output("latentFlux","latent heat flux","w.m^-2",zdqsdif(:,igcm_h2o_vap)*RLVTT)
2568	endif
2569
2570	! Thermal plume model
2571	if (calltherm) then
2572	call write_output('entr','Entrainment','kg m$^{-2}$ s$^{-1}$', entr)
2573	call write_output('detr','Detrainment','kg m$^{-2}$ s$^{-1}$', detr)
2574	call write_output('fm','Mass flux','kg m$^{-2}$ s$^{-1}$', fm_bis)
2575	call write_output('w_plm','Squared vertical velocity','m s$^{-1}$', zw2_bis)
2576	call write_output('fraca','Updraft fraction','', fraca)
2577	call write_output("zdttherm","dt due to plumes","K-1 s-1",zdttherm) !ALS24
2578	IF (tracer) THEN
2579	call write_output("zdqtherm","dq due to plumes, iq = 1","kg kg-1 s-1",&
2580	zdqtherm(1:ngrid,1:nlayer,1)) !ALS24
2581	call write_output("zdqtherm2","dq due to plumes; iq = 2","kg kg-1 s-1",&
2582	zdqtherm(1:ngrid,1:nlayer,2)) !ALS24
2583	ENDIF
2584	endif
2585
2586	! GW non-oro outputs
2587	if (calllott_nonoro) then
2588	call write_output("dugwno","GW non-oro dU","m/s2", d_u_hin)
2589	call write_output("dvgwno","GW non-oro dV","m/s2", d_v_hin)
2590	endif
2591
2592	! Total energy balance diagnostics
2593	if(callrad.and.(.not.newtonian))then
2594
2595	call write_output("ALB","Surface albedo"," ",albedo_equivalent)
2596	call write_output("ASR","absorbed stellar rad.","W m-2",fluxabs_sw)
2597	call write_output("ISR","incoming stellar rad.","W m-2",fluxtop_dn)
2598	call write_output("OLR","outgoing longwave rad.","W m-2",fluxtop_lw)
2599	call write_output("DYN","dynamical heat input","W m-2",fluxdyn)
2600	call write_output("shad","rings"," ", fract)
2601	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
2602	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
2603	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
2604	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
2605	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
2606	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
2607	! call writediagfi(ngrid,"netfluxsurflw","lw net surface flux","W m-2",2,net_fluxsurf_lw)
2608
2609	if(ok_slab_ocean) then
2610	call write_output("GND","heat flux from ground","W m-2",fluxgrdocean)
2611	else
2612	call write_output("GND","heat flux from ground","W m-2",fluxgrd)
2613	endif
2614	endif ! end of 'callrad'
2615
2616	if(enertest) then
2617
2618	if (calldifv) then
2619	call write_output("q2","turbulent kinetic energy","J.kg^-1",q2)
2620	call write_output("sensibFlux","sensible heat flux","w.m^-2",sensibFlux)
2621	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
2622	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
2623	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
2624	endif
2625
2626	if (corrk) then
2627	call write_output("dEzradsw","radiative heating","w.m^-2",dEzradsw)
2628	call write_output("dEzradlw","radiative heating","w.m^-2",dEzradlw)
2629	endif
2630
2631	if(watercond) then
2632	call write_output("lscaledE","heat from largescale","W m-2",lscaledE)
2633	if ((.not.calltherm).and.moistadjustment) then
2634	call write_output("madjdE","heat from moistadj","W m-2",madjdE)
2635	endif
2636	call write_output("qsatatm","atm qsat"," ",qsat)
2637	! call write_output("lscaledEz","heat from largescale","W m-2",lscaledEz)
2638	! call write_output("madjdEz","heat from moistadj","W m-2",madjdEz)
2639	! call write_output("h2o_max_col","maximum H2O column amount","kg.m^-2",H2Omaxcol)
2640	endif
2641
2642	if (generic_condensation) then
2643	call write_output("genericconddE","heat from generic condensation","W m-2",genericconddE)
2644	call write_output("dt_generic_condensation","heating from generic condensation","K s-1",dt_generic_condensation)
2645	endif
2646
2647	endif ! end of 'enertest'
2648
2649	! Diagnostics of optical thickness
2650	! Warning this is exp(-tau), I let you postproc with -log to have tau itself - JVO 19
2651	if (diagdtau) then
2652	do nw=1,L_NSPECTV
2653	write(str2,'(i2.2)') nw
2654	call write_output('dtauv'//str2,'Layer optical thickness attenuation in VI band '//str2,'',int_dtauv(:,nlayer:1:-1,nw))
2655	enddo
2656	do nw=1,L_NSPECTI
2657	write(str2,'(i2.2)') nw
2658	call write_output('dtaui'//str2,'Layer optical thickness attenuation in IR band '//str2,'',int_dtaui(:,nlayer:1:-1,nw))
2659	enddo
2660	endif
2661
2662	! Temporary inclusions for heating diagnostics.
2663	call write_output("zdtsw","SW heating","T s-1",zdtsw)
2664	call write_output("zdtlw","LW heating","T s-1",zdtlw)
2665	call write_output("dtrad","radiative heating","K s-1",dtrad)
2666	call write_output("zdtdyn","Dyn. heating","T s-1",zdtdyn)
2667
2668	if (tracer .or. water) call write_output("dtmoistadj","moist adj heating","K s-1",dtmoist)
2669	if (calladj) call write_output("dtdryadj","dry adj heating","K s-1",zdtadj)
2670
2671	! For Debugging.
2672	!call writediagfi(ngrid,'rnat','Terrain type',' ',2,real(rnat))
2673	!call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
2674
2675
2676	! Output aerosols.
2677	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
2678	call write_output('CO2ice_reff','CO2ice_reff','m',reffrad(:,:,iaero_co2))
2679	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
2680	call write_output('H2Oice_reff','H2Oice_reff','m',reffrad(:,:,iaero_h2o))
2681	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
2682	call write_output('CO2ice_reffcol','CO2ice_reffcol','um kg m^-2',reffcol(:,iaero_co2))
2683	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
2684	call write_output('H2Oice_reffcol','H2Oice_reffcol','um kg m^-2',reffcol(:,iaero_h2o))
2685
2686	! Output tracers.
2687	if (tracer) then
2688
2689	do iq=1,nq
2690	call write_output(noms(iq),noms(iq),'kg/kg',zq(:,:,iq))
2691	call write_output(trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2692	'kg m^-2',qsurf_hist(:,iq) )
2693	call write_output(trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
2694	'kg m^-2',qcol(:,iq) )
2695	! call write_output(trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2696	! 'kg m^-2',qsurf(:,iq) )
2697
2698	if(watercond.or.CLFvarying)then
2699	call write_output("rneb_man","H2O cloud fraction (conv)"," ",rneb_man)
2700	call write_output("rneb_lsc","H2O cloud fraction (large scale)"," ",rneb_lsc)
2701	call write_output("CLF","H2O cloud fraction"," ",cloudfrac)
2702	call write_output("CLFt","H2O column cloud fraction"," ",totcloudfrac)
2703	call write_output("RH","relative humidity"," ",RH)
2704	call write_output("vteta","virtual potential temperature","K",zh * (1.+(1./epsi-1.) * &
2705	zq(1:ngrid,1:nlayer,1)))
2706	endif
2707
2708	if(waterrain)then
2709	call write_output("rain","rainfall","kg m-2 s-1",zdqsrain)
2710	call write_output("snow","snowfall","kg m-2 s-1",zdqssnow)
2711	call write_output("reevap","reevaporation of precipitation","kg m-2 s-1",reevap_precip)
2712	endif
2713
2714	if(generic_condensation)then
2715	call write_output("CLF","GCS cloud fraction"," ",cloudfrac)
2716	!AF24: TODO fix rneb_generic and RH_generic failure with write_output()
2717	! call write_output("rneb_generic","GCS cloud fraction (generic condensation)"," ",rneb_generic)
2718	! call write_output("RH_generic","GCS relative humidity"," ",RH_generic)
2719	call writediagfi(ngrid,"rneb_generic","GCS cloud fraction (generic condensation)"," ",3,rneb_generic)
2720	call writediagfi(ngrid,"RH_generic","GCS relative humidity"," ",3,RH_generic)
2721	call write_output("vteta","virtual potential temperature","K",zh * (1.+(1./epsi_generic-1.) * &
2722	zq(1:ngrid,1:nlayer,1) ))
2723	endif
2724
2725	if(generic_rain)then
2726	call write_output("rain","generic rainfall","kg m-2 s-1",zdqsrain_generic)
2727	call write_output("snow","generic snowfall","kg m-2 s-1",zdqssnow_generic)
2728	call write_output("reevap","generic reevaporation of precipitation","kg m-2 s-1",reevap_precip_generic)
2729	endif
2730
2731	if((hydrology).and.(.not.ok_slab_ocean))then
2732	call write_output("hice","oceanic ice height","m",hice)
2733	endif
2734
2735	call write_output("tau_col","Total aerosol optical depth","[]",tau_col)
2736	enddo ! end of 'nq' loop
2737	endif ! end of 'tracer'
2738
2739	! Output spectrum.
2740	if(specOLR.and.corrk)then
2741	call writediagspecIR(ngrid,"OLR3D","OLR(lon,lat,band)","W/m^2/cm^-1",3,OLR_nu)
2742	call writediagspecVI(ngrid,"OSR3D","OSR(lon,lat,band)","W/m^2/cm^-1",3,OSR_nu)
2743	call writediagspecVI(ngrid,"GSR3D","GSR(lon,lat,band)","W/m^2/cm^-1",3,GSR_nu)
2744	endif
2745
2746	#else
2747	comm_HR_SW(1:ngrid,1:nlayer) = zdtsw(1:ngrid,1:nlayer)
2748	comm_HR_LW(1:ngrid,1:nlayer) = zdtlw(1:ngrid,1:nlayer)
2749	comm_ALBEQ(1:ngrid)=albedo_equivalent(1:ngrid)
2750	if (.not.calldifv) comm_LATENT_HF(:)=0.0
2751	if ((tracer).and.(water)) then
2752	comm_CLOUDFRAC(1:ngrid,1:nlayer)=cloudfrac(1:ngrid,1:nlayer)
2753	comm_TOTCLOUDFRAC(1:ngrid)=totcloudfrac(1:ngrid)
2754	comm_SURFRAIN(1:ngrid)=zdqsrain(1:ngrid)
2755	comm_DQVAP(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_h2o_vap)
2756	comm_DQICE(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_h2o_ice)
2757	comm_H2OICE_REFF(1:ngrid,1:nlayer)=reffrad(1:ngrid,1:nlayer,iaero_h2o)
2758	comm_REEVAP(1:ngrid)=reevap_precip(1:ngrid)
2759	comm_DTRAIN(1:ngrid,1:nlayer)=zdtrain(1:ngrid,1:nlayer)
2760	comm_DTLSC(1:ngrid,1:nlayer)=dtlscale(1:ngrid,1:nlayer)
2761	comm_RH(1:ngrid,1:nlayer)=RH(1:ngrid,1:nlayer)
2762
2763	else if ((tracer).and.(generic_condensation).and.(.not. water)) then
2764
2765	! If you have set generic_condensation (and not water) and you have set several GCS
2766	! then the outputs given to WRF will be only the ones for the last generic tracer
2767	! (Because it is rewritten every tracer in the loop)
2768	! WRF can take only one moist tracer
2769
2770	do iq=1,nq
2771	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
2772
2773	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
2774
2775	reffrad_generic_zeros_for_wrf(:,:) = 1.
2776
2777	comm_CLOUDFRAC(1:ngrid,1:nlayer) = cloudfrac(1:ngrid,1:nlayer)
2778	comm_TOTCLOUDFRAC(1:ngrid) = totcloudfrac(1:ngrid) !??????
2779	comm_SURFRAIN(1:ngrid) = zdqsrain_generic(1:ngrid,iq)
2780	comm_DQVAP(1:ngrid,1:nlayer) = pdq(1:ngrid,1:nlayer,igcm_generic_vap)
2781	comm_DQICE(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_generic_ice)
2782	comm_H2OICE_REFF(1:ngrid,1:nlayer) = reffrad_generic_zeros_for_wrf(1:ngrid,1:nlayer) ! for now zeros !
2783	!comm_H2OICE_REFF(1:ngrid,1:nlayer) = 0*zdtrain_generic(1:ngrid,1:nlayer) ! for now zeros !
2784	comm_REEVAP(1:ngrid) = reevap_precip_generic(1:ngrid,iq)
2785	comm_DTRAIN(1:ngrid,1:nlayer) = zdtrain_generic(1:ngrid,1:nlayer)
2786	comm_DTLSC(1:ngrid,1:nlayer) = dt_generic_condensation(1:ngrid,1:nlayer)
2787	comm_RH(1:ngrid,1:nlayer) = RH_generic(1:ngrid,1:nlayer,iq)
2788
2789	endif
2790	end do ! do iq=1,nq loop on tracers
2791
2792	else
2793	comm_CLOUDFRAC(1:ngrid,1:nlayer)=0.
2794	comm_TOTCLOUDFRAC(1:ngrid)=0.
2795	comm_SURFRAIN(1:ngrid)=0.
2796	comm_DQVAP(1:ngrid,1:nlayer)=0.
2797	comm_DQICE(1:ngrid,1:nlayer)=0.
2798	comm_H2OICE_REFF(1:ngrid,1:nlayer)=0.
2799	comm_REEVAP(1:ngrid)=0.
2800	comm_DTRAIN(1:ngrid,1:nlayer)=0.
2801	comm_DTLSC(1:ngrid,1:nlayer)=0.
2802	comm_RH(1:ngrid,1:nlayer)=0.
2803
2804	endif ! if water, if generic_condensation, else
2805
2806	comm_FLUXTOP_DN(1:ngrid)=fluxtop_dn(1:ngrid)
2807	comm_FLUXABS_SW(1:ngrid)=fluxabs_sw(1:ngrid)
2808	comm_FLUXTOP_LW(1:ngrid)=fluxtop_lw(1:ngrid)
2809	comm_FLUXSURF_SW(1:ngrid)=fluxsurf_sw(1:ngrid)
2810	comm_FLUXSURF_LW(1:ngrid)=fluxsurf_lw(1:ngrid)
2811	comm_FLXGRD(1:ngrid)=fluxgrd(1:ngrid)
2812	sensibFlux(1:ngrid) = zflubid(1:ngrid) - capcal(1:ngrid)*zdtsdif(1:ngrid) !!! ????
2813	comm_HR_DYN(1:ngrid,1:nlayer) = zdtdyn(1:ngrid,1:nlayer)
2814
2815	! if (turb_resolved) then
2816	! open(17,file='lsf.txt',form='formatted',status='old')
2817	! rewind(17)
2818	! DO l=1,nlayer
2819	! read(17,*) lsf_dt(l),lsf_dq(l)
2820	! ENDDO
2821	! close(17)
2822	! do ig=1,ngrid
2823	! if ((tracer).and.(water)) then
2824	! pdq(ig,:,igcm_h2o_vap) = pdq(ig,:,igcm_h2o_vap) + lsf_dq(:)
2825	! endif
2826	! pdt(ig,:) = pdt(ig,:) + lsf_dt(:)
2827	! comm_HR_DYN(ig,:) = lsf_dt(:)
2828	! enddo
2829	! endif
2830	#endif
2831
2832	! XIOS outputs
2833	#ifdef CPP_XIOS
2834	! Send fields to XIOS: (NB these fields must also be defined as
2835	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
2836	CALL send_xios_field("controle",tab_cntrl_mod,1)
2837
2838	CALL send_xios_field("ap",ap,1)
2839	CALL send_xios_field("bp",bp,1)
2840	CALL send_xios_field("aps",aps,1)
2841	CALL send_xios_field("bps",bps,1)
2842
2843	IF (water) THEN
2844	CALL send_xios_field('h2o_layer1',zq(:,1,igcm_h2o_vap))
2845	CALL send_xios_field('co2_layer1',zq(:,1,igcm_co2_ice))
2846	ENDIF
2847
2848	if (specOLR .and. corrk) then
2849	call send_xios_field("OLR3D",OLR_nu)
2850	call send_xios_field("IR_Bandwidth",DWNI)
2851	call send_xios_field("VI_Bandwidth",DWNV)
2852	call send_xios_field("OSR3D",OSR_nu)
2853	call send_xios_field("GSR3D",GSR_nu)
2854	endif
2855
2856	if (lastcall.and.is_omp_master) then
2857	write(,) "physiq: call xios_context_finalize"
2858	call xios_context_finalize
2859	endif
2860	#endif
2861
2862	if (check_physics_outputs) then
2863	! Check the validity of updated fields at the end of the physics step
2864	call check_physics_fields("end of physiq:", zt, zu, zv, pplev, zq)
2865	endif
2866
2867	icount=icount+1
2868
2869	end subroutine physiq
2870
2871	end module physiq_mod

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