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physiq_mod.F90 @ 2613

Last change on this file since 2613 was 2603, checked in by emillour, 3 years ago
Generic GCM: Minor bug fix for the (rather specific) case when there is no surface and inertiedat() is not defined. EM
Property svn:executable set to ``*
File size: 101.9 KB

Line
1	module physiq_mod
2
3	implicit none
4
5	contains
6
7	subroutine physiq(ngrid,nlayer,nq, &
8	nametrac, &
9	firstcall,lastcall, &
10	pday,ptime,ptimestep, &
11	pplev,pplay,pphi, &
12	pu,pv,pt,pq, &
13	flxw, &
14	pdu,pdv,pdt,pdq,pdpsrf)
15
16	use radinc_h, only : L_NSPECTI,L_NSPECTV,naerkind
17	use watercommon_h, only : RLVTT, Psat_water,epsi,su_watercycle, RV, T_h2o_ice_liq
18	use thermcell_mod, only: init_thermcell_mod
19	use gases_h, only: gnom, gfrac
20	use radcommon_h, only: sigma, glat, grav, BWNV
21	use radii_mod, only: h2o_reffrad, co2_reffrad
22	use aerosol_mod, only: iaero_co2, iaero_h2o
23	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe, &
24	dryness, watercaptag
25	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
26	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
27	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
28	use geometry_mod, only: latitude, longitude, cell_area
29	USE comgeomfi_h, only: totarea, totarea_planet
30	USE tracer_h, only: noms, mmol, radius, rho_q, qext, &
31	alpha_lift, alpha_devil, qextrhor, &
32	igcm_h2o_ice, igcm_h2o_vap, igcm_dustbin, &
33	igcm_co2_ice, nesp, is_chim
34	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
35	use phyetat0_mod, only: phyetat0
36	use phyredem, only: physdem0, physdem1
37	use slab_ice_h, only: capcalocean, capcalseaice,capcalsno, &
38	noceanmx
39	use ocean_slab_mod, only :ocean_slab_init, ocean_slab_ice, &
40	ini_surf_heat_transp_mod, &
41	ocean_slab_get_vars,ocean_slab_final
42	use surf_heat_transp_mod,only :init_masquv
43	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
44	use mod_phys_lmdz_para, only : is_master
45	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
46	obliquit, nres, z0
47	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
48	use time_phylmdz_mod, only: daysec
49	use callkeys_mod, only: albedo_spectral_mode, calladj, calldifv, &
50	calllott_nonoro, callrad, callsoil, nosurf, &
51	callstats, &
52	calltherm, CLFvarying, co2cond, corrk, diagdtau, &
53	diurnal, enertest, fat1au, flatten, j2, &
54	hydrology, icetstep, intheat, iradia, kastprof, &
55	lwrite, mass_redistrib, massplanet, meanOLR, &
56	nearco2cond, newtonian, noseason_day, oblate, &
57	ok_slab_ocean, photochem, rings_shadow, rmean, &
58	season, sedimentation, sourceevol, specOLR, &
59	startphy_file, testradtimes, tlocked, &
60	tracer, UseTurbDiff, water, watercond, &
61	waterrain, global1d, szangle
62	use nonoro_gwd_ran_mod, only: nonoro_gwd_ran
63	use conc_mod, only: rnew, cpnew, ini_conc_mod
64	use phys_state_var_mod
65	use callcorrk_mod, only: callcorrk
66	use vdifc_mod, only: vdifc
67	use turbdiff_mod, only: turbdiff
68	use turb_mod, only : q2,sensibFlux,turb_resolved
69	use mass_redistribution_mod, only: mass_redistribution
70	#ifndef MESOSCALE
71	use vertical_layers_mod, only: presnivs, pseudoalt
72	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
73	#else
74	use comm_wrf, only : comm_HR_SW, comm_HR_LW, &
75	comm_CLOUDFRAC,comm_TOTCLOUDFRAC,&
76	comm_SURFRAIN,comm_REEVAP,comm_HR_DYN,&
77	comm_RAIN,comm_SNOW,comm_ALBEQ,&
78	comm_FLUXTOP_DN,comm_FLUXABS_SW,&
79	comm_FLUXTOP_LW,comm_FLUXSURF_SW,&
80	comm_FLUXSURF_LW,comm_FLXGRD,&
81	comm_LSCEZ,comm_H2OICE_REFF
82	#endif
83
84	#ifdef CPP_XIOS
85	use xios_output_mod, only: initialize_xios_output, &
86	update_xios_timestep, &
87	send_xios_field
88	use wxios, only: wxios_context_init, xios_context_finalize
89	#endif
90
91	implicit none
92
93
94	!==================================================================
95	!
96	! Purpose
97	! -------
98	! Central subroutine for all the physics parameterisations in the
99	! universal model. Originally adapted from the Mars LMDZ model.
100	!
101	! The model can be run without or with tracer transport
102	! depending on the value of "tracer" in file "callphys.def".
103	!
104	!
105	! It includes:
106	!
107	! I. Initialization :
108	! I.1 Firstcall initializations.
109	! I.2 Initialization for every call to physiq.
110	!
111	! II. Compute radiative transfer tendencies (longwave and shortwave) :
112	! II.a Option 1 : Call correlated-k radiative transfer scheme.
113	! II.b Option 2 : Call Newtonian cooling scheme.
114	! II.c Option 3 : Atmosphere has no radiative effect.
115	!
116	! III. Vertical diffusion (turbulent mixing) :
117	!
118	! IV. Convection :
119	! IV.a Thermal plume model
120	! IV.b Dry convective adjusment
121	!
122	! V. Condensation and sublimation of gases (currently just CO2).
123	!
124	! VI. Tracers
125	! VI.1. Water and water ice.
126	! VI.2 Photochemistry
127	! VI.3. Aerosols and particles.
128	! VI.4. Updates (pressure variations, surface budget).
129	! VI.5. Slab Ocean.
130	! VI.6. Surface Tracer Update.
131	!
132	! VII. Surface and sub-surface soil temperature.
133	!
134	! VIII. Perform diagnostics and write output files.
135	!
136	!
137	! arguments
138	! ---------
139	!
140	! INPUT
141	! -----
142	!
143	! ngrid Size of the horizontal grid.
144	! nlayer Number of vertical layers.
145	! nq Number of advected fields.
146	! nametrac Name of corresponding advected fields.
147	!
148	! firstcall True at the first call.
149	! lastcall True at the last call.
150	!
151	! pday Number of days counted from the North. Spring equinoxe.
152	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
153	! ptimestep timestep (s).
154	!
155	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
156	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
157	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
158	!
159	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
160	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
161	!
162	! pt(ngrid,nlayer) Temperature (K).
163	!
164	! pq(ngrid,nlayer,nq) Advected fields.
165	!
166	! pudyn(ngrid,nlayer) \
167	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
168	! ptdyn(ngrid,nlayer) / corresponding variables.
169	! pqdyn(ngrid,nlayer,nq) /
170	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
171	!
172	! OUTPUT
173	! ------
174	!
175	! pdu(ngrid,nlayer) \
176	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
177	! pdt(ngrid,nlayer) / variables due to physical processes.
178	! pdq(ngrid,nlayer) /
179	! pdpsrf(ngrid) /
180	!
181	!
182	! Authors
183	! -------
184	! Frederic Hourdin 15/10/93
185	! Francois Forget 1994
186	! Christophe Hourdin 02/1997
187	! Subroutine completely rewritten by F. Forget (01/2000)
188	! Water ice clouds: Franck Montmessin (update 06/2003)
189	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
190	! New correlated-k radiative scheme: R. Wordsworth (2009)
191	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
192	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
193	! To F90: R. Wordsworth (2010)
194	! New turbulent diffusion scheme: J. Leconte (2012)
195	! Loops converted to F90 matrix format: J. Leconte (2012)
196	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
197	! Purge of the code : M. Turbet (2015)
198	! Photochemical core developped by F. Lefevre: B. Charnay (2017)
199	!==================================================================
200
201
202	! 0. Declarations :
203	! ------------------
204
205	include "netcdf.inc"
206
207	! Arguments :
208	! -----------
209
210	! INPUTS:
211	! -------
212
213	integer,intent(in) :: ngrid ! Number of atmospheric columns.
214	integer,intent(in) :: nlayer ! Number of atmospheric layers.
215	integer,intent(in) :: nq ! Number of tracers.
216	character*30,intent(in) :: nametrac(nq) ! Names of the tracers taken from dynamics.
217
218	logical,intent(in) :: firstcall ! Signals first call to physics.
219	logical,intent(in) :: lastcall ! Signals last call to physics.
220
221	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
222	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
223	real,intent(in) :: ptimestep ! Physics timestep (s).
224	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
225	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
226	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
227	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
228	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
229	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
230	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
231	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
232
233	! OUTPUTS:
234	! --------
235
236	! Physical tendencies :
237
238	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
239	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
240	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
241	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
242	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
243
244	! Local saved variables:
245	! ----------------------
246	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
247	integer,save :: icount ! Counter of calls to physiq during the run.
248	!$OMP THREADPRIVATE(day_ini,icount)
249
250	! Local variables :
251	! -----------------
252
253	! Aerosol (dust or ice) extinction optical depth at reference wavelength
254	! for the "naerkind" optically active aerosols:
255
256	real aerosol(ngrid,nlayer,naerkind) ! Aerosols.
257	real zh(ngrid,nlayer) ! Potential temperature (K).
258	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
259	real omega(ngrid,nlayer) ! omega velocity (Pa/s, >0 when downward)
260
261	integer l,ig,ierr,iq,nw,isoil,iesp
262
263	real zls ! Solar longitude (radians).
264	real zlss ! Sub solar point longitude (radians).
265	real zday ! Date (time since Ls=0, calculated in sols).
266	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
267	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
268
269	! VARIABLES for the thermal plume model
270
271	real f(ngrid) ! Mass flux norm
272	real fm(ngrid,nlayer+1) ! Mass flux
273	real fm_bis(ngrid,nlayer) ! Recasted fm
274	real entr(ngrid,nlayer) ! Entrainment
275	real detr(ngrid,nlayer) ! Detrainment
276	real dqevap(ngrid,nlayer,nq) ! water tracer mass mixing ratio variations due to evaporation
277	real dtevap(ngrid,nlayer) ! temperature variation due to evaporation
278	real zqtherm(ngrid,nlayer,nq) ! vapor mass mixing ratio after evaporation
279	real zttherm(ngrid,nlayer) ! temperature after evaporation
280	real fraca(ngrid,nlayer+1) ! Fraction of the surface that plumes occupies
281	real zw2(ngrid,nlayer+1) ! Vertical speed
282	real zw2_bis(ngrid,nlayer) ! Recasted zw2
283
284	! TENDENCIES due to various processes :
285
286	! For Surface Temperature : (K/s)
287	real zdtsurf(ngrid) ! Cumulated tendencies.
288	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
289	real zdtsurfc(ngrid) ! Condense_co2 routine.
290	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
291	real zdtsurf_hyd(ngrid) ! Hydrol routine.
292
293	! For Atmospheric Temperatures : (K/s)
294	real dtlscale(ngrid,nlayer) ! Largescale routine.
295	real zdtc(ngrid,nlayer) ! Condense_co2 routine.
296	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
297	real zdttherm(ngrid,nlayer) ! Calltherm routine.
298	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
299	real zdtrain(ngrid,nlayer) ! Rain routine.
300	real dtmoist(ngrid,nlayer) ! Moistadj routine.
301	real dt_ekman(ngrid,noceanmx), dt_hdiff(ngrid,noceanmx) ! Slab_ocean routine.
302	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
303	real zdtchim(ngrid,nlayer) ! Calchim routine.
304
305	! For Surface Tracers : (kg/m2/s)
306	real dqsurf(ngrid,nq) ! Cumulated tendencies.
307	real zdqsurfc(ngrid) ! Condense_co2 routine.
308	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
309	real zdqssed(ngrid,nq) ! Callsedim routine.
310	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
311	real zdqsrain(ngrid), zdqssnow(ngrid) ! Rain routine.
312	real dqs_hyd(ngrid,nq) ! Hydrol routine.
313	real reevap_precip(ngrid) ! re-evaporation flux of precipitation (integrated over the atmospheric column)
314
315	! For Tracers : (kg/kg_of_air/s)
316	real zdqc(ngrid,nlayer,nq) ! Condense_co2 routine.
317	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
318	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
319	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
320	real zdqtherm(ngrid,nlayer,nq) ! Calltherm routine.
321	real zdqsed(ngrid,nlayer,nq) ! Callsedim routine.
322	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
323	real zdqrain(ngrid,nlayer,nq) ! Rain routine.
324	real dqmoist(ngrid,nlayer,nq) ! Moistadj routine.
325	real dqvaplscale(ngrid,nlayer) ! Largescale routine.
326	real dqcldlscale(ngrid,nlayer) ! Largescale routine.
327	REAL,allocatable,save :: zdqchim(:,:,:) ! Calchim_asis routine
328	REAL,allocatable,save :: zdqschim(:,:) ! Calchim_asis routine
329
330	REAL array_zero1(ngrid)
331	REAL array_zero2(ngrid,nlayer)
332
333	! For Winds : (m/s/s)
334	real zdvadj(ngrid,nlayer), zduadj(ngrid,nlayer) ! Convadj routine.
335	real zdutherm(ngrid,nlayer), zdvtherm(ngrid,nlayer) ! Calltherm routine.
336	real zdumr(ngrid,nlayer), zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
337	real zdvdif(ngrid,nlayer), zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
338	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
339	real zdhadj(ngrid,nlayer) ! Convadj routine.
340
341	! For Pressure and Mass :
342	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
343	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
344	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
345
346
347
348	! Local variables for LOCAL CALCULATIONS:
349	! ---------------------------------------
350	real zflubid(ngrid)
351	real zplanck(ngrid),zpopsk(ngrid,nlayer)
352	real ztim1,ztim2,ztim3, z1,z2
353	real ztime_fin
354	real zdh(ngrid,nlayer)
355	real gmplanet
356	real taux(ngrid),tauy(ngrid)
357
358
359	! local variables for DIAGNOSTICS : (diagfi & stat)
360	! -------------------------------------------------
361	real ps(ngrid) ! Surface Pressure.
362	real zt(ngrid,nlayer) ! Atmospheric Temperature.
363	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
364	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
365	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
366	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
367	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
368
369	real reff(ngrid,nlayer) ! Effective dust radius (used if doubleq=T).
370	real vmr(ngrid,nlayer) ! volume mixing ratio
371	real time_phys
372
373	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
374
375	real qcol(ngrid,nq) ! Tracer Column Mass (kg/m2).
376
377	! included by RW for H2O Manabe scheme
378	real rneb_man(ngrid,nlayer) ! H2O cloud fraction (moistadj).
379	real rneb_lsc(ngrid,nlayer) ! H2O cloud fraction (large scale).
380
381
382	! to test energy conservation (RW+JL)
383	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
384	real dEtot, dEtots, AtmToSurf_TurbFlux
385	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
386	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
387
388	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
389
390	real dtmoist_max,dtmoist_min
391	real dItot, dItot_tmp, dVtot, dVtot_tmp
392
393
394	real h2otot ! Total Amount of water. For diagnostic.
395	real icesrf,liqsrf,icecol,vapcol ! Total Amounts of water (ice,liq,vap). For diagnostic.
396	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
397	logical,save :: watertest
398	!$OMP THREADPRIVATE(watertest)
399
400	real qsat(ngrid,nlayer) ! Water Vapor Volume Mixing Ratio at saturation (kg/kg_of_air).
401	real RH(ngrid,nlayer) ! Relative humidity.
402	real psat_tmp
403
404	logical clearsky ! For double radiative transfer call. By BC
405
406	! For Clear Sky Case.
407	real fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
408	real tau_col1(ngrid) ! For aerosol optical depth diagnostic.
409	real OLR_nu1(ngrid,L_NSPECTI) ! Clear sky TOA LW radiation in each IR band
410	real OSR_nu1(ngrid,L_NSPECTV) ! Clear sky TOA SW radiation in each VI band
411	real GSR_nu1(ngrid,L_NSPECTV) ! Clear sky Surface SW radiation in each VI band
412	real int_dtaui1(ngrid,nlayer,L_NSPECTI),int_dtauv1(ngrid,nlayer,L_NSPECTV) ! For optical thickness diagnostics.
413	real tf, ntf
414
415	real nconsMAX, vdifcncons(ngrid), cadjncons(ngrid) ! Vdfic water conservation test. By RW
416
417	real muvar(ngrid,nlayer+1) ! For Runaway Greenhouse 1D study. By RW
418
419	real reffcol(ngrid,naerkind)
420
421	! Sourceevol for 'accelerated ice evolution'. By RW
422	real delta_ice,ice_tot
423	integer num_run
424	logical,save :: ice_update
425	! Non-oro GW tendencies
426	REAL d_u_hin(ngrid,nlayer), d_v_hin(ngrid,nlayer)
427	REAL d_t_hin(ngrid,nlayer)
428	! Diagnostics 2D of gw_nonoro
429	REAL zustrhi(ngrid), zvstrhi(ngrid)
430
431
432	real :: tsurf2(ngrid)
433	real :: flux_o(ngrid),flux_g(ngrid)
434	real :: flux_sens_lat(ngrid)
435	real :: qsurfint(ngrid,nq)
436	#ifdef MESOSCALE
437	REAL :: lsf_dt(nlayer)
438	REAL :: lsf_dq(nlayer)
439	#endif
440
441	! Misc
442	character*2 :: str2
443	!==================================================================================================
444
445	! -----------------
446	! I. INITIALISATION
447	! -----------------
448
449	! --------------------------------
450	! I.1 First Call Initialisation.
451	! --------------------------------
452	if (firstcall) then
453	! Allocate saved arrays (except for 1D model, where this has already
454	! been done)
455	#ifndef MESOSCALE
456	if (ngrid>1) call phys_state_var_init(nq)
457	#endif
458
459	! Variables set to 0
460	! ~~~~~~~~~~~~~~~~~~
461	dtrad(:,:) = 0.0
462	fluxrad(:) = 0.0
463	tau_col(:) = 0.0
464	zdtsw(:,:) = 0.0
465	zdtlw(:,:) = 0.0
466
467
468	! Initialize aerosol indexes.
469	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~
470	call iniaerosol()
471
472
473	! Initialize tracer names, indexes and properties.
474	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
475	IF (.NOT.ALLOCATED(noms)) ALLOCATE(noms(nq)) ! (because noms is an argument of physdem1 whether or not tracer is on)
476	if (tracer) then
477	call initracer(ngrid,nq,nametrac)
478	if(photochem) then
479	call ini_conc_mod(ngrid,nlayer)
480	IF (.NOT.ALLOCATED(zdqchim)) ALLOCATE(zdqchim(ngrid,nlayer,nesp))
481	IF (.NOT.ALLOCATED(zdqschim)) ALLOCATE(zdqschim(ngrid,nesp))
482	endif
483	endif
484
485	#ifdef CPP_XIOS
486	! Initialize XIOS context
487	write(,) "physiq: call wxios_context_init"
488	CALL wxios_context_init
489	#endif
490
491	! Read 'startfi.nc' file.
492	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
493	#ifndef MESOSCALE
494	call phyetat0(startphy_file, &
495	ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
496	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf, &
497	cloudfrac,totcloudfrac,hice, &
498	rnat,pctsrf_sic,tslab, tsea_ice,sea_ice)
499	#else
500	emis(:)=0.0
501	q2(:,:)=0.0
502	qsurf(:,:)=0.0
503	day_ini = pday
504	#endif
505
506	#ifndef MESOSCALE
507	if (.not.startphy_file) then
508	! additionnal "academic" initialization of physics
509	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
510	tsurf(:)=pt(:,1)
511	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
512	do isoil=1,nsoilmx
513	tsoil(1:ngrid,isoil)=tsurf(1:ngrid)
514	enddo
515	if (is_master) write(,) "Physiq: initializing day_ini to pdat !"
516	day_ini=pday
517	endif
518	#endif
519	if (pday.ne.day_ini) then
520	write(,) "ERROR in physiq.F90:"
521	write(,) "bad synchronization between physics and dynamics"
522	write(,) "dynamics day: ",pday
523	write(,) "physics day: ",day_ini
524	stop
525	endif
526
527	write (,) 'In physiq day_ini =', day_ini
528
529	! Initialize albedo calculation.
530	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
531	albedo(:,:)=0.0
532	albedo_bareground(:)=0.0
533	albedo_snow_SPECTV(:)=0.0
534	albedo_co2_ice_SPECTV(:)=0.0
535	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground,albedo_snow_SPECTV,albedo_co2_ice_SPECTV)
536
537	! Initialize orbital calculation.
538	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
539	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
540
541
542	if(tlocked)then
543	print*,'Planet is tidally locked at resonance n=',nres
544	print*,'Make sure you have the right rotation rate!!!'
545	endif
546
547	! Initialize oceanic variables.
548	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
549
550	if (ok_slab_ocean)then
551
552	call ocean_slab_init(ngrid,ptimestep, tslab, &
553	sea_ice, pctsrf_sic)
554
555	call ini_surf_heat_transp_mod()
556
557	knindex(:) = 0
558
559	do ig=1,ngrid
560	zmasq(ig)=1
561	knindex(ig) = ig
562	if (nint(rnat(ig)).eq.0) then
563	zmasq(ig)=0
564	endif
565	enddo
566
567	CALL init_masquv(ngrid,zmasq)
568
569	endif ! end of 'ok_slab_ocean'.
570
571
572	! Initialize soil.
573	! ~~~~~~~~~~~~~~~~
574	if (callsoil) then
575
576	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
577	ptimestep,tsurf,tsoil,capcal,fluxgrd)
578
579	if (ok_slab_ocean) then
580	do ig=1,ngrid
581	if (nint(rnat(ig)).eq.2) then
582	capcal(ig)=capcalocean
583	if (pctsrf_sic(ig).gt.0.5) then
584	capcal(ig)=capcalseaice
585	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
586	capcal(ig)=capcalsno
587	endif
588	endif
589	endif
590	enddo
591	endif ! end of 'ok_slab_ocean'.
592
593	else ! else of 'callsoil'.
594
595	print*,'WARNING! Thermal conduction in the soil turned off'
596	capcal(:)=1.e6
597	fluxgrd(:)=intheat
598	print*,'Flux from ground = ',intheat,' W m^-2'
599
600	endif ! end of 'callsoil'.
601
602	icount=1
603
604	! Decide whether to update ice at end of run.
605	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
606	ice_update=.false.
607	if(sourceevol)then
608	!$OMP MASTER
609	open(128,file='num_run',form='formatted', &
610	status="old",iostat=ierr)
611	if (ierr.ne.0) then
612	write(,) "physiq: Error! No num_run file!"
613	write(,) " (which is needed for sourceevol option)"
614	stop
615	endif
616	read(128,*) num_run
617	close(128)
618	!$OMP END MASTER
619	!$OMP BARRIER
620
621	if(num_run.ne.0.and.mod(num_run,2).eq.0)then
622	print*,'Updating ice at end of this year!'
623	ice_update=.true.
624	ice_min(:)=1.e4
625	endif
626
627	endif ! end of 'sourceevol'.
628
629
630	! Here is defined the type of the surface : Continent or Ocean.
631	! BC2014 : This is now already done in newstart.
632	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
633	if (.not.ok_slab_ocean) then
634
635	rnat(:)=1.
636	if (.not.nosurf) then ! inertiedat only defined if there is a surface
637	do ig=1,ngrid
638	if(inertiedat(ig,1).gt.1.E4)then
639	rnat(ig)=0
640	endif
641	enddo
642
643	print*,'WARNING! Surface type currently decided by surface inertia'
644	print*,'This should be improved e.g. in newstart.F'
645	endif
646	endif ! end of 'ok_slab_ocean'.
647
648
649	! Initialize surface history variable.
650	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
651	qsurf_hist(:,:)=qsurf(:,:)
652
653	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
654	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
655	ztprevious(:,:)=pt(:,:)
656	zuprevious(:,:)=pu(:,:)
657
658	! Set temperature just above condensation temperature (for Early Mars)
659	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
660	if(nearco2cond) then
661	write(,)' WARNING! Starting at Tcond+1K'
662	do l=1, nlayer
663	do ig=1,ngrid
664	pdt(ig,l)= ((-3167.8)/(log(.01*pplay(ig,l))-23.23)+4 &
665	-pt(ig,l)) / ptimestep
666	enddo
667	enddo
668	endif
669
670	if(meanOLR)then
671	call system('rm -f rad_bal.out') ! to record global radiative balance.
672	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
673	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
674	endif
675
676
677	watertest=.false.
678	if(water)then ! Initialize variables for water cycle
679
680	if(enertest)then
681	watertest = .true.
682	endif
683
684	if(ice_update)then
685	ice_initial(:)=qsurf(:,igcm_h2o_ice)
686	endif
687
688	endif
689
690	! Set some parameters for the thermal plume model
691	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
692	if (calltherm) then
693	CALL init_thermcell_mod(g, rcp, r, pi, T_h2o_ice_liq, RV)
694	endif
695
696	call su_watercycle ! even if we don't have a water cycle, we might
697	! need epsi for the wvp definitions in callcorrk.F
698	! or RETV, RLvCp for the thermal plume model
699	#ifndef MESOSCALE
700	if (ngrid.ne.1) then ! Note : no need to create a restart file in 1d.
701	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
702	ptimestep,pday+nday,time_phys,cell_area, &
703	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
704	endif
705	#endif
706
707	! XIOS outputs
708	#ifdef CPP_XIOS
709
710	write(,) "physiq: call initialize_xios_output"
711	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
712	presnivs,pseudoalt)
713	#endif
714	write(,) "physiq: end of firstcall"
715	endif ! end of 'firstcall'
716
717	! ------------------------------------------------------
718	! I.2 Initializations done at every physical timestep:
719	! ------------------------------------------------------
720
721	#ifdef CPP_XIOS
722	! update XIOS time/calendar
723	call update_xios_timestep
724	#endif
725
726	! Initialize various variables
727	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
728
729	if ( .not.nearco2cond ) then
730	pdt(1:ngrid,1:nlayer) = 0.0
731	endif
732	zdtsurf(1:ngrid) = 0.0
733	pdq(1:ngrid,1:nlayer,1:nq) = 0.0
734	dqsurf(1:ngrid,1:nq)= 0.0
735	pdu(1:ngrid,1:nlayer) = 0.0
736	pdv(1:ngrid,1:nlayer) = 0.0
737	pdpsrf(1:ngrid) = 0.0
738	zflubid(1:ngrid) = 0.0
739	flux_sens_lat(1:ngrid) = 0.0
740	taux(1:ngrid) = 0.0
741	tauy(1:ngrid) = 0.0
742
743	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
744
745	! Compute Stellar Longitude (Ls), and orbital parameters.
746	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
747	if (season) then
748	call stellarlong(zday,zls)
749	else
750	call stellarlong(noseason_day,zls)
751	end if
752
753	call orbite(zls,dist_star,declin,right_ascen)
754
755	if (tlocked) then
756	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
757	elseif (diurnal) then
758	zlss=-2.pi(zday-.5)
759	else if(diurnal .eqv. .false.) then
760	zlss=9999.
761	endif
762
763
764	! Compute variations of g with latitude (oblate case).
765	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
766	if (oblate .eqv. .false.) then
767	glat(:) = g
768	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
769	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute glat (else set oblate=.false.)'
770	call abort
771	else
772	gmplanet = MassPlanetgrav1e24
773	do ig=1,ngrid
774	glat(ig)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
775	end do
776	endif
777
778	! Compute geopotential between layers.
779	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
780	zzlay(1:ngrid,1:nlayer)=pphi(1:ngrid,1:nlayer)
781	do l=1,nlayer
782	zzlay(1:ngrid,l)= zzlay(1:ngrid,l)/glat(1:ngrid)
783	enddo
784
785	zzlev(1:ngrid,1)=0.
786	zzlev(1:ngrid,nlayer+1)=1.e7 ! Dummy top of last layer above 10000 km...
787
788	do l=2,nlayer
789	do ig=1,ngrid
790	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
791	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
792	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
793	enddo
794	enddo
795
796	! Compute potential temperature
797	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
798	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
799	do l=1,nlayer
800	do ig=1,ngrid
801	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
802	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
803	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
804	massarea(ig,l)=mass(ig,l)*cell_area(ig)
805	enddo
806	enddo
807
808	! Compute vertical velocity (m/s) from vertical mass flux
809	! w = F / (rhoarea) and rho = P/(rT)
810	! But first linearly interpolate mass flux to mid-layers
811	do l=1,nlayer-1
812	pw(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
813	enddo
814	pw(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
815	do l=1,nlayer
816	pw(1:ngrid,l)=(pw(1:ngrid,l)rpt(1:ngrid,l)) / &
817	(pplay(1:ngrid,l)*cell_area(1:ngrid))
818	enddo
819	! omega in Pa/s
820	do l=1,nlayer-1
821	omega(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
822	enddo
823	omega(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
824	do l=1,nlayer
825	omega(1:ngrid,l)=g*omega(1:ngrid,l)/cell_area(1:ngrid)
826	enddo
827
828	! ----------------------------------------------------------------
829	! Compute mean mass, cp, and R
830	! --------------------------------
831	#ifndef MESOSCALE
832	if(photochem) then
833	call concentrations(ngrid,nlayer,nq,pplay,pt,pdt,pq,pdq,ptimestep)
834	endif
835	#endif
836
837	!---------------------------------
838	! II. Compute radiative tendencies
839	!---------------------------------
840
841	if (callrad) then
842	if( mod(icount-1,iradia).eq.0.or.lastcall) then
843
844	! Compute local stellar zenith angles
845	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
846	if (tlocked) then
847	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
848	ztim1=SIN(declin)
849	ztim2=COS(declin)*COS(zlss)
850	ztim3=COS(declin)*SIN(zlss)
851
852	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
853	ztim1,ztim2,ztim3,mu0,fract, flatten)
854
855	elseif (diurnal) then
856	ztim1=SIN(declin)
857	ztim2=COS(declin)COS(2.pi*(zday-.5))
858	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
859
860	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
861	ztim1,ztim2,ztim3,mu0,fract, flatten)
862	else if(diurnal .eqv. .false.) then
863
864	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
865	! WARNING: this function appears not to work in 1D
866
867	if ((ngrid.eq.1).and.(global1d)) then ! Fixed zenith angle 'szangle' in 1D simulations w/ globally-averaged sunlight.
868	mu0 = cos(pi*szangle/180.0)
869	!print*,'acosz=',mu0,', szangle=',szangle
870	endif
871
872	endif
873
874	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
875	if(rings_shadow) then
876	call call_rings(ngrid, ptime, pday, diurnal)
877	endif
878
879
880	if (corrk) then
881
882	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
883	! II.a Call correlated-k radiative transfer scheme
884	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
885	if(kastprof)then
886	print*,'kastprof should not = true here'
887	call abort
888	endif
889	if(water) then
890	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,1:nlayer,igcm_h2o_vap))
891	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,nlayer,igcm_h2o_vap))
892	! take into account water effect on mean molecular weight
893	else
894	muvar(1:ngrid,1:nlayer+1)=mugaz
895	endif
896
897
898	if(ok_slab_ocean) then
899	tsurf2(:)=tsurf(:)
900	do ig=1,ngrid
901	if (nint(rnat(ig))==0) then
902	tsurf(ig)=((1.-pctsrf_sic(ig))tslab(ig,1)4+pctsrf_sic(ig)tsea_ice(ig)4)0.25
903	endif
904	enddo
905	endif !(ok_slab_ocean)
906
907	! standard callcorrk
908	clearsky=.false.
909	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
910	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
911	tsurf,fract,dist_star,aerosol,muvar, &
912	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
913	fluxsurfabs_sw,fluxtop_lw, &
914	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu,GSR_nu, &
915	int_dtaui,int_dtauv, &
916	tau_col,cloudfrac,totcloudfrac, &
917	clearsky,firstcall,lastcall)
918
919	! Option to call scheme once more for clear regions
920	if(CLFvarying)then
921
922	! ---> PROBLEMS WITH ALLOCATED ARRAYS : temporary solution in callcorrk: do not deallocate if CLFvarying ...
923	clearsky=.true.
924	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
925	albedo,albedo_equivalent1,emis,mu0,pplev,pplay,pt, &
926	tsurf,fract,dist_star,aerosol,muvar, &
927	zdtlw1,zdtsw1,fluxsurf_lw1,fluxsurf_sw1, &
928	fluxsurfabs_sw1,fluxtop_lw1, &
929	fluxabs_sw1,fluxtop_dn,OLR_nu1,OSR_nu1,GSR_nu1, &
930	int_dtaui1,int_dtauv1, &
931	tau_col1,cloudfrac,totcloudfrac, &
932	clearsky,firstcall,lastcall)
933	clearsky = .false. ! just in case.
934
935	! Sum the fluxes and heating rates from cloudy/clear cases
936	do ig=1,ngrid
937	tf=totcloudfrac(ig)
938	ntf=1.-tf
939	fluxsurf_lw(ig) = ntffluxsurf_lw1(ig) + tffluxsurf_lw(ig)
940	fluxsurf_sw(ig) = ntffluxsurf_sw1(ig) + tffluxsurf_sw(ig)
941	albedo_equivalent(ig) = ntfalbedo_equivalent1(ig) + tfalbedo_equivalent(ig)
942	fluxsurfabs_sw(ig) = ntffluxsurfabs_sw1(ig) + tffluxsurfabs_sw(ig)
943	fluxtop_lw(ig) = ntffluxtop_lw1(ig) + tffluxtop_lw(ig)
944	fluxabs_sw(ig) = ntffluxabs_sw1(ig) + tffluxabs_sw(ig)
945	tau_col(ig) = ntftau_col1(ig) + tftau_col(ig)
946
947	zdtlw(ig,1:nlayer) = ntfzdtlw1(ig,1:nlayer) + tfzdtlw(ig,1:nlayer)
948	zdtsw(ig,1:nlayer) = ntfzdtsw1(ig,1:nlayer) + tfzdtsw(ig,1:nlayer)
949
950	OSR_nu(ig,1:L_NSPECTV) = ntfOSR_nu1(ig,1:L_NSPECTV) + tfOSR_nu(ig,1:L_NSPECTV)
951	GSR_nu(ig,1:L_NSPECTV) = ntfGSR_nu1(ig,1:L_NSPECTV) + tfGSR_nu(ig,1:L_NSPECTV)
952	OLR_nu(ig,1:L_NSPECTI) = ntfOLR_nu1(ig,1:L_NSPECTI) + tfOLR_nu(ig,1:L_NSPECTI)
953	if (diagdtau) then
954	int_dtauv(ig,:,1:L_NSPECTV) = ntfint_dtauv1(ig,:,1:L_NSPECTV) + tfint_dtauv(ig,:,1:L_NSPECTV)
955	int_dtaui(ig,:,1:L_NSPECTI) = ntfint_dtaui1(ig,:,1:L_NSPECTI) + tfint_dtaui(ig,:,1:L_NSPECTI)
956	endif
957	enddo
958
959	endif ! end of CLFvarying.
960
961	if(ok_slab_ocean) then
962	tsurf(:)=tsurf2(:)
963	endif
964
965
966	! Radiative flux from the sky absorbed by the surface (W.m-2).
967	GSR=0.0
968	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+fluxsurfabs_sw(1:ngrid)
969
970	!if(noradsurf)then ! no lower surface; SW flux just disappears
971	! GSR = SUM(fluxsurf_sw(1:ngrid)*cell_area(1:ngrid))/totarea
972	! fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
973	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
974	!endif
975
976	! Net atmospheric radiative heating rate (K.s-1)
977	dtrad(1:ngrid,1:nlayer)=zdtsw(1:ngrid,1:nlayer)+zdtlw(1:ngrid,1:nlayer)
978
979	! Late initialization of the Ice Spectral Albedo. We needed the visible bands to do that !
980	if (firstcall .and. albedo_spectral_mode) then
981	call spectral_albedo_calc(albedo_snow_SPECTV)
982	endif
983
984	elseif(newtonian)then
985
986	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
987	! II.b Call Newtonian cooling scheme
988	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
989	call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
990
991	zdtsurf(1:ngrid) = +(pt(1:ngrid,1)-tsurf(1:ngrid))/ptimestep
992	! e.g. surface becomes proxy for 1st atmospheric layer ?
993
994	else
995
996	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
997	! II.c Atmosphere has no radiative effect
998	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
999	fluxtop_dn(1:ngrid) = fract(1:ngrid)mu0(1:ngrid)Fat1AU/dist_star**2
1000	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
1001	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
1002	endif
1003	fluxsurf_sw(1:ngrid) = fluxtop_dn(1:ngrid)
1004	print*,'------------WARNING---WARNING------------' ! by MT2015.
1005	print*,'You are in corrk=false mode, '
1006	print*,'and the surface albedo is taken equal to the first visible spectral value'
1007
1008	fluxsurfabs_sw(1:ngrid) = fluxtop_dn(1:ngrid)*(1.-albedo(1:ngrid,1))
1009	fluxrad_sky(1:ngrid) = fluxsurfabs_sw(1:ngrid)
1010	fluxtop_lw(1:ngrid) = emis(1:ngrid)sigmatsurf(1:ngrid)**4
1011
1012	dtrad(1:ngrid,1:nlayer)=0.0 ! no atmospheric radiative heating
1013
1014	endif ! end of corrk
1015
1016	endif ! of if(mod(icount-1,iradia).eq.0)
1017
1018
1019	! Transformation of the radiative tendencies
1020	! ------------------------------------------
1021	zplanck(1:ngrid)=tsurf(1:ngrid)*tsurf(1:ngrid)
1022	zplanck(1:ngrid)=emis(1:ngrid)sigmazplanck(1:ngrid)*zplanck(1:ngrid)
1023	fluxrad(1:ngrid)=fluxrad_sky(1:ngrid)-zplanck(1:ngrid)
1024	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+dtrad(1:ngrid,1:nlayer)
1025
1026	! Test of energy conservation
1027	!----------------------------
1028	if(enertest)then
1029	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
1030	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
1031	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
1032	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
1033	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
1034	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
1035	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
1036	if (is_master) then
1037	print*,'---------------------------------------------------------------'
1038	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
1039	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
1040	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
1041	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
1042	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
1043	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
1044	endif
1045	endif ! end of 'enertest'
1046
1047	endif ! of if (callrad)
1048
1049
1050
1051	! --------------------------------------------
1052	! III. Vertical diffusion (turbulent mixing) :
1053	! --------------------------------------------
1054
1055	if (calldifv) then
1056
1057	zflubid(1:ngrid)=fluxrad(1:ngrid)+fluxgrd(1:ngrid)
1058
1059	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
1060	if (UseTurbDiff) then
1061
1062	call turbdiff(ngrid,nlayer,nq,rnat, &
1063	ptimestep,capcal, &
1064	pplay,pplev,zzlay,zzlev,z0, &
1065	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
1066	pdt,pdq,zflubid, &
1067	zdudif,zdvdif,zdtdif,zdtsdif, &
1068	sensibFlux,q2,zdqdif,zdqevap,zdqsdif, &
1069	taux,tauy)
1070
1071	else
1072
1073	zdh(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1074
1075	call vdifc(ngrid,nlayer,nq,rnat,zpopsk, &
1076	ptimestep,capcal,lwrite, &
1077	pplay,pplev,zzlay,zzlev,z0, &
1078	pu,pv,zh,pq,tsurf,emis,qsurf, &
1079	zdh,pdq,zflubid, &
1080	zdudif,zdvdif,zdhdif,zdtsdif, &
1081	sensibFlux,q2,zdqdif,zdqsdif)
1082
1083	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1084	zdqevap(1:ngrid,1:nlayer)=0.
1085
1086	end if !end of 'UseTurbDiff'
1087
1088	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+zdtsdif(1:ngrid)
1089
1090	!!! this is always done, except for turbulence-resolving simulations
1091	if (.not. turb_resolved) then
1092	pdv(1:ngrid,1:nlayer)=pdv(1:ngrid,1:nlayer)+zdvdif(1:ngrid,1:nlayer)
1093	pdu(1:ngrid,1:nlayer)=pdu(1:ngrid,1:nlayer)+zdudif(1:ngrid,1:nlayer)
1094	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtdif(1:ngrid,1:nlayer)
1095	endif
1096
1097	if(ok_slab_ocean)then
1098	flux_sens_lat(1:ngrid)=(zdtsdif(1:ngrid)*capcal(1:ngrid)-fluxrad(1:ngrid))
1099	endif
1100
1101
1102	if (tracer) then
1103	pdq(1:ngrid,1:nlayer,1:nq)=pdq(1:ngrid,1:nlayer,1:nq)+ zdqdif(1:ngrid,1:nlayer,1:nq)
1104	dqsurf(1:ngrid,1:nq)=dqsurf(1:ngrid,1:nq) + zdqsdif(1:ngrid,1:nq)
1105	end if ! of if (tracer)
1106
1107
1108	! test energy conservation
1109	!-------------------------
1110	if(enertest)then
1111
1112	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
1113	do ig = 1, ngrid
1114	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
1115	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
1116	enddo
1117
1118	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
1119	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
1120	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
1121	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
1122
1123	if (is_master) then
1124
1125	if (UseTurbDiff) then
1126	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1127	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
1128	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1129	else
1130	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
1131	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
1132	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
1133	end if
1134	endif ! end of 'is_master'
1135
1136	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
1137	endif ! end of 'enertest'
1138
1139
1140	! Test water conservation.
1141	if(watertest.and.water)then
1142
1143	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
1144	call planetwide_sumval(zdqsdif(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots_tmp)
1145	do ig = 1, ngrid
1146	vdifcncons(ig)=SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_vap))
1147	enddo
1148	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1149	call planetwide_sumval(zdqsdif(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
1150	dWtot = dWtot + dWtot_tmp
1151	dWtots = dWtots + dWtots_tmp
1152	do ig = 1, ngrid
1153	vdifcncons(ig)=vdifcncons(ig) + SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_ice))
1154	enddo
1155	call planetwide_maxval(vdifcncons(:),nconsMAX)
1156
1157	if (is_master) then
1158	print*,'---------------------------------------------------------------'
1159	print*,'In difv atmospheric water change =',dWtot,' kg m-2'
1160	print*,'In difv surface water change =',dWtots,' kg m-2'
1161	print*,'In difv non-cons factor =',dWtot+dWtots,' kg m-2'
1162	print*,'In difv MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
1163	endif
1164
1165	endif ! end of 'watertest'
1166	!-------------------------
1167
1168	else ! calldifv
1169
1170	if(.not.newtonian)then
1171
1172	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + (fluxrad(1:ngrid) + fluxgrd(1:ngrid))/capcal(1:ngrid)
1173
1174	endif
1175
1176	endif ! end of 'calldifv'
1177
1178
1179	!-------------------
1180	! IV. Convection :
1181	!-------------------
1182
1183	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
1184	! IV.a Thermal plume model :
1185	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
1186
1187	IF (calltherm) THEN
1188
1189	! AB: We need to evaporate ice before calling thermcell_main.
1190	IF (water) THEN
1191	CALL evap(ngrid,nlayer,nq,ptimestep,pt,pq,pdq,pdt,dqevap,dtevap,zqtherm,zttherm)
1192	ELSE
1193	zttherm(:,:) = pt(:,:) + pdt(:,:) * ptimestep
1194	zqtherm(:,:,:) = pq(:,:,:) + pdq(:,:,:) * ptimestep
1195	ENDIF
1196
1197	CALL thermcell_main(ngrid, nlayer, nq, ptimestep, firstcall, &
1198	pplay, pplev, pphi, zpopsk, &
1199	pu, pv, zttherm, zqtherm, &
1200	zdutherm, zdvtherm, zdttherm, zdqtherm, &
1201	fm, entr, detr, zw2, fraca)
1202
1203	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdutherm(1:ngrid,1:nlayer)
1204	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvtherm(1:ngrid,1:nlayer)
1205	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdttherm(1:ngrid,1:nlayer)
1206
1207	IF (tracer) THEN
1208	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqtherm(1:ngrid,1:nlayer,1:nq)
1209	ENDIF
1210
1211	ENDIF ! end of 'calltherm'
1212
1213	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1214	! IV.b Dry convective adjustment :
1215	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1216
1217	if(calladj) then
1218
1219	zdh(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
1220	zduadj(1:ngrid,1:nlayer)=0.0
1221	zdvadj(1:ngrid,1:nlayer)=0.0
1222	zdhadj(1:ngrid,1:nlayer)=0.0
1223
1224
1225	call convadj(ngrid,nlayer,nq,ptimestep, &
1226	pplay,pplev,zpopsk, &
1227	pu,pv,zh,pq, &
1228	pdu,pdv,zdh,pdq, &
1229	zduadj,zdvadj,zdhadj, &
1230	zdqadj)
1231
1232	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zduadj(1:ngrid,1:nlayer)
1233	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvadj(1:ngrid,1:nlayer)
1234	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
1235	zdtadj(1:ngrid,1:nlayer) = zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
1236
1237	if(tracer) then
1238	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqadj(1:ngrid,1:nlayer,1:nq)
1239	end if
1240
1241	! Test energy conservation
1242	if(enertest)then
1243	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
1244	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
1245	endif
1246
1247	! Test water conservation
1248	if(watertest)then
1249	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
1250	do ig = 1, ngrid
1251	cadjncons(ig)=SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_vap))
1252	enddo
1253	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1254	dWtot = dWtot + dWtot_tmp
1255	do ig = 1, ngrid
1256	cadjncons(ig)=cadjncons(ig) + SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_ice))
1257	enddo
1258	call planetwide_maxval(cadjncons(:),nconsMAX)
1259
1260	if (is_master) then
1261	print*,'In convadj atmospheric water change =',dWtot,' kg m-2'
1262	print*,'In convadj MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
1263	endif
1264
1265	endif ! end of 'watertest'
1266
1267	endif ! end of 'calladj'
1268	!----------------------------------------------
1269	! Non orographic Gravity Waves:
1270	!---------------------------------------------
1271	IF (calllott_nonoro) THEN
1272
1273	CALL nonoro_gwd_ran(ngrid,nlayer,ptimestep, &
1274	cpnew, rnew, &
1275	pplay, &
1276	zmax_th, &! max altitude reached by thermals (m)
1277	pt, pu, pv, &
1278	pdt, pdu, pdv, &
1279	zustrhi,zvstrhi, &
1280	d_t_hin, d_u_hin, d_v_hin)
1281
1282	! Update tendencies
1283	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) &
1284	+ d_t_hin(1:ngrid,1:nlayer)
1285	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) &
1286	+ d_u_hin(1:ngrid,1:nlayer)
1287	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) &
1288	+ d_v_hin(1:ngrid,1:nlayer)
1289	print*,'du_nonoro: max ', maxval(d_u_hin), 'min ', minval(d_u_hin)
1290	print*,'dv_nonoro: max ', maxval(d_v_hin), 'min ', minval(d_v_hin)
1291
1292	ENDIF ! of IF (calllott_nonoro)
1293
1294
1295
1296	!-----------------------------------------------
1297	! V. Carbon dioxide condensation-sublimation :
1298	!-----------------------------------------------
1299
1300	if (co2cond) then
1301
1302	if (.not.tracer) then
1303	print*,'We need a CO2 ice tracer to condense CO2'
1304	call abort
1305	endif
1306	call condense_co2(ngrid,nlayer,nq,ptimestep, &
1307	capcal,pplay,pplev,tsurf,pt, &
1308	pdt,zdtsurf,pq,pdq, &
1309	qsurf,zdqsurfc,albedo,emis, &
1310	albedo_bareground,albedo_co2_ice_SPECTV, &
1311	zdtc,zdtsurfc,pdpsrf,zdqc)
1312
1313	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtc(1:ngrid,1:nlayer)
1314	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfc(1:ngrid)
1315
1316	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+ zdqc(1:ngrid,1:nlayer,1:nq)
1317	dqsurf(1:ngrid,igcm_co2_ice) = dqsurf(1:ngrid,igcm_co2_ice) + zdqsurfc(1:ngrid)
1318
1319	! test energy conservation
1320	if(enertest)then
1321	call planetwide_sumval(cppmassarea(:,:)zdtc(:,:)/totarea_planet,dEtot)
1322	call planetwide_sumval(capcal(:)zdtsurfc(:)cell_area(:)/totarea_planet,dEtots)
1323	if (is_master) then
1324	print*,'In co2cloud atmospheric energy change =',dEtot,' W m-2'
1325	print*,'In co2cloud surface energy change =',dEtots,' W m-2'
1326	endif
1327	endif
1328
1329	endif ! end of 'co2cond'
1330
1331
1332	!---------------------------------------------
1333	! VI. Specific parameterizations for tracers
1334	!---------------------------------------------
1335
1336	if (tracer) then
1337
1338	! ---------------------
1339	! VI.1. Water and ice
1340	! ---------------------
1341	if (water) then
1342
1343	! Water ice condensation in the atmosphere
1344	if(watercond.and.(RLVTT.gt.1.e-8))then
1345
1346	if (.not.calltherm) then
1347	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
1348	dtmoist(1:ngrid,1:nlayer)=0.
1349
1350	! Moist Convective Adjustment.
1351	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1352	call moistadj(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
1353
1354	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
1355	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap)
1356	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
1357	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_ice)
1358	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
1359
1360	! Test energy conservation.
1361	if(enertest)then
1362	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
1363	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
1364	call planetwide_minval(dtmoist(:,:),dtmoist_min)
1365	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
1366
1367	do ig=1,ngrid
1368	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
1369	enddo
1370
1371	if (is_master) then
1372	print*,'In moistadj atmospheric energy change =',dEtot,' W m-2'
1373	print,'In moistadj MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
1374	print,'In moistadj MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
1375	endif
1376
1377	call planetwide_sumval(massarea(:,:)dqmoist(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
1378	massarea(:,:)dqmoist(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1379	if (is_master) print*,'In moistadj atmospheric water change =',dWtot,' kg m-2'
1380
1381	endif ! end of 'enertest'
1382	endif ! end of '.not.calltherm'
1383
1384	! Large scale condensation/evaporation.
1385	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1386	call largescale(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pq,pdt,pdq,dtlscale,dqvaplscale,dqcldlscale,rneb_lsc)
1387
1388	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtlscale(1:ngrid,1:nlayer)
1389	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap)+dqvaplscale(1:ngrid,1:nlayer)
1390	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice)+dqcldlscale(1:ngrid,1:nlayer)
1391
1392	! Test energy conservation.
1393	if(enertest)then
1394	lscaledEz(:,:) = cppmass(:,:)dtlscale(:,:)
1395	do ig=1,ngrid
1396	lscaledE(ig) = cppSUM(mass(:,:)dtlscale(:,:))
1397	enddo
1398	call planetwide_sumval(cppmassarea(:,:)dtlscale(:,:)/totarea_planet,dEtot)
1399
1400	if (is_master) print*,'In largescale atmospheric energy change =',dEtot,' W m-2'
1401
1402	! Test water conservation.
1403	call planetwide_sumval(massarea(:,:)dqvaplscale(:,:)ptimestep/totarea_planet+ &
1404	SUM(massarea(:,:)dqcldlscale(:,:))ptimestep/totarea_planet,dWtot)
1405
1406	if (is_master) print*,'In largescale atmospheric water change =',dWtot,' kg m-2'
1407	endif ! end of 'enertest'
1408
1409	! Compute cloud fraction.
1410	do l = 1, nlayer
1411	do ig=1,ngrid
1412	cloudfrac(ig,l)=MAX(rneb_lsc(ig,l),rneb_man(ig,l))
1413	enddo
1414	enddo
1415
1416	endif ! end of 'watercond'
1417
1418	! Water ice / liquid precipitation.
1419	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1420	zdqrain(1:ngrid,1:nlayer,1:nq) = 0.0 !JL18 need to do that everytimestep if mass redis is on.
1421
1422	if(waterrain)then
1423
1424	zdqsrain(1:ngrid) = 0.0
1425	zdqssnow(1:ngrid) = 0.0
1426
1427	call rain(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pdt,pq,pdq, &
1428	zdtrain,zdqrain,zdqsrain,zdqssnow,reevap_precip,cloudfrac)
1429
1430	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
1431	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
1432	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
1433	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
1434	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain(1:ngrid,1:nlayer)
1435
1436	dqsurf(1:ngrid,igcm_h2o_vap) = dqsurf(1:ngrid,igcm_h2o_vap)+zdqsrain(1:ngrid)
1437	dqsurf(1:ngrid,igcm_h2o_ice) = dqsurf(1:ngrid,igcm_h2o_ice)+zdqssnow(1:ngrid)
1438
1439	! Test energy conservation.
1440	if(enertest)then
1441
1442	call planetwide_sumval(cppmassarea(:,:)zdtrain(:,:)/totarea_planet,dEtot)
1443	if (is_master) print*,'In rain atmospheric T energy change =',dEtot,' W m-2'
1444	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
1445	call planetwide_sumval(cell_area(:)zdqssnow(:)/totarea_planetRLVTT/cpp,dItot)
1446	dItot = dItot + dItot_tmp
1447	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dVtot_tmp)
1448	call planetwide_sumval(cell_area(:)zdqsrain(:)/totarea_planetRLVTT/cpp,dVtot)
1449	dVtot = dVtot + dVtot_tmp
1450	dEtot = dItot + dVtot
1451
1452	if (is_master) then
1453	print*,'In rain dItot =',dItot,' W m-2'
1454	print*,'In rain dVtot =',dVtot,' W m-2'
1455	print*,'In rain atmospheric L energy change =',dEtot,' W m-2'
1456	endif
1457
1458	! Test water conservation
1459	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
1460	massarea(:,:)zdqrain(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
1461	call planetwide_sumval((zdqsrain(:)+zdqssnow(:))cell_area(:)ptimestep/totarea_planet,dWtots)
1462
1463	if (is_master) then
1464	print*,'In rain atmospheric water change =',dWtot,' kg m-2'
1465	print*,'In rain surface water change =',dWtots,' kg m-2'
1466	print*,'In rain non-cons factor =',dWtot+dWtots,' kg m-2'
1467	endif
1468
1469	endif ! end of 'enertest'
1470
1471	end if ! enf of 'waterrain'
1472
1473	end if ! end of 'water'
1474
1475	! -------------------------
1476	! VI.2. Photochemistry
1477	! -------------------------
1478
1479	#ifndef MESOSCALE
1480	IF (photochem) then
1481
1482	DO ig=1,ngrid
1483	array_zero1(ig)=0.0
1484	DO l=1,nlayer
1485	array_zero2(ig,l)=0.
1486	ENDDO
1487	ENDDO
1488
1489	call calchim_asis(ngrid,nlayer,nq, &
1490	ptimestep,pplay,pplev,pt,pdt,dist_star,mu0, &
1491	fract,zzlev,zzlay,zday,pq,pdq,zdqchim,zdqschim, &
1492	array_zero1,array_zero1, &
1493	pu,pdu,pv,pdv,array_zero2,array_zero2,icount,zdtchim)
1494
1495	! increment values of tracers:
1496	iesp = 0
1497	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
1498	! tracers is zero anyways
1499	! September 2020: flag is_chim to increment only on chemical species
1500	IF (is_chim(iq)==1) THEN
1501	iesp = iesp + 1
1502	DO l=1,nlayer
1503	DO ig=1,ngrid
1504	pdq(ig,l,iq)=pdq(ig,l,iq)+zdqchim(ig,l,iesp)
1505	ENDDO
1506	ENDDO
1507	ENDIF
1508	ENDDO ! of DO iq=1,nq
1509
1510
1511	! increment surface values of tracers:
1512	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
1513	! tracers is zero anyways
1514	DO ig=1,ngrid
1515	! dqsurf(ig,iq)=dqsurf(ig,iq)+zdqschim(ig,iq)
1516	ENDDO
1517	ENDDO ! of DO iq=1,nq
1518
1519	! increment values of temperature:
1520	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtchim(1:ngrid,1:nlayer)
1521
1522	END IF ! of IF (photochem)
1523	#endif
1524
1525
1526	! -------------------------
1527	! VI.3. Aerosol particles
1528	! -------------------------
1529
1530	! Sedimentation.
1531	if (sedimentation) then
1532
1533	zdqsed(1:ngrid,1:nlayer,1:nq) = 0.0
1534	zdqssed(1:ngrid,1:nq) = 0.0
1535
1536	if(watertest)then
1537
1538	iq=igcm_h2o_ice
1539	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
1540	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
1541	if (is_master) then
1542	print*,'Before sedim pq =',dWtot,' kg m-2'
1543	print*,'Before sedim pdq =',dWtots,' kg m-2'
1544	endif
1545	endif
1546
1547	call callsedim(ngrid,nlayer,ptimestep, &
1548	pplev,zzlev,pt,pdt,pq,pdq, &
1549	zdqsed,zdqssed,nq)
1550
1551	if(watertest)then
1552	iq=igcm_h2o_ice
1553	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
1554	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
1555	if (is_master) then
1556	print*,'After sedim pq =',dWtot,' kg m-2'
1557	print*,'After sedim pdq =',dWtots,' kg m-2'
1558	endif
1559	endif
1560
1561	! Whether it falls as rain or snow depends only on the surface temperature
1562	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqsed(1:ngrid,1:nlayer,1:nq)
1563	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqssed(1:ngrid,1:nq)
1564
1565	! Test water conservation
1566	if(watertest)then
1567	call planetwide_sumval(massarea(:,:)(zdqsed(:,:,igcm_h2o_vap)+zdqsed(:,:,igcm_h2o_ice))ptimestep/totarea_planet,dWtot)
1568	call planetwide_sumval((zdqssed(:,igcm_h2o_vap)+zdqssed(:,igcm_h2o_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
1569	if (is_master) then
1570	print*,'In sedim atmospheric ice change =',dWtot,' kg m-2'
1571	print*,'In sedim surface ice change =',dWtots,' kg m-2'
1572	print*,'In sedim non-cons factor =',dWtot+dWtots,' kg m-2'
1573	endif
1574	endif
1575
1576	end if ! end of 'sedimentation'
1577
1578
1579	! ---------------
1580	! VI.4. Updates
1581	! ---------------
1582
1583	! Updating Atmospheric Mass and Tracers budgets.
1584	if(mass_redistrib) then
1585
1586	zdmassmr(1:ngrid,1:nlayer) = mass(1:ngrid,1:nlayer) * &
1587	( zdqevap(1:ngrid,1:nlayer) &
1588	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap) &
1589	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap) &
1590	+ dqvaplscale(1:ngrid,1:nlayer) )
1591
1592	do ig = 1, ngrid
1593	zdmassmr_col(ig)=SUM(zdmassmr(ig,1:nlayer))
1594	enddo
1595
1596	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
1597	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
1598	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
1599
1600	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
1601	rnat,capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
1602	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
1603	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
1604
1605	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqmr(1:ngrid,1:nlayer,1:nq)
1606	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqsurfmr(1:ngrid,1:nq)
1607	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdtmr(1:ngrid,1:nlayer)
1608	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdumr(1:ngrid,1:nlayer)
1609	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvmr(1:ngrid,1:nlayer)
1610	pdpsrf(1:ngrid) = pdpsrf(1:ngrid) + zdpsrfmr(1:ngrid)
1611	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfmr(1:ngrid)
1612
1613	endif
1614
1615	! ------------------
1616	! VI.5. Slab Ocean
1617	! ------------------
1618
1619	if (ok_slab_ocean)then
1620
1621	do ig=1,ngrid
1622	qsurfint(:,igcm_h2o_ice)=qsurf(:,igcm_h2o_ice)
1623	enddo
1624
1625	call ocean_slab_ice(ptimestep, &
1626	ngrid, knindex, tsea_ice, fluxrad, &
1627	zdqssnow, qsurf(:,igcm_h2o_ice), &
1628	- zdqsdif(:,igcm_h2o_vap), &
1629	flux_sens_lat,tsea_ice, pctsrf_sic, &
1630	taux,tauy,icount)
1631
1632
1633	call ocean_slab_get_vars(ngrid,tslab, &
1634	sea_ice, flux_o, &
1635	flux_g, dt_hdiff, &
1636	dt_ekman)
1637
1638	do ig=1,ngrid
1639	if (nint(rnat(ig)).eq.1)then
1640	tslab(ig,1) = 0.
1641	tslab(ig,2) = 0.
1642	tsea_ice(ig) = 0.
1643	sea_ice(ig) = 0.
1644	pctsrf_sic(ig) = 0.
1645	qsurf(ig,igcm_h2o_ice) = qsurfint(ig,igcm_h2o_ice)
1646	endif
1647	enddo
1648
1649	endif ! end of 'ok_slab_ocean'
1650
1651	! -----------------------------
1652	! VI.6. Surface Tracer Update
1653	! -----------------------------
1654
1655	if(hydrology)then
1656
1657	call hydrol(ngrid,nq,ptimestep,rnat,tsurf,qsurf,dqsurf,dqs_hyd, &
1658	capcal,albedo,albedo_bareground, &
1659	albedo_snow_SPECTV,albedo_co2_ice_SPECTV, &
1660	mu0,zdtsurf,zdtsurf_hyd,hice,pctsrf_sic, &
1661	sea_ice)
1662
1663	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurf_hyd(1:ngrid)
1664	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + dqs_hyd(1:ngrid,1:nq)
1665
1666	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
1667
1668	! Test energy conservation
1669	if(enertest)then
1670	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf_hyd(:)/totarea_planet,dEtots)
1671	if (is_master) print*,'In hydrol surface energy change =',dEtots,' W m-2'
1672	endif
1673
1674	! test water conservation
1675	if(watertest)then
1676	call planetwide_sumval(dqs_hyd(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
1677	if (is_master) print*,'In hydrol surface ice change =',dWtots,' kg m-2'
1678	call planetwide_sumval(dqs_hyd(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots)
1679	if (is_master) then
1680	print*,'In hydrol surface water change =',dWtots,' kg m-2'
1681	print*,'---------------------------------------------------------------'
1682	endif
1683	endif
1684
1685	else ! of if (hydrology)
1686
1687	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
1688
1689	end if ! of if (hydrology)
1690
1691	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
1692	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
1693	qsurf_hist(:,:) = qsurf(:,:)
1694
1695	if(ice_update)then
1696	ice_min(1:ngrid)=min(ice_min(1:ngrid),qsurf(1:ngrid,igcm_h2o_ice))
1697	endif
1698
1699	endif! end of if 'tracer'
1700
1701
1702	!------------------------------------------------
1703	! VII. Surface and sub-surface soil temperature
1704	!------------------------------------------------
1705
1706
1707	! Increment surface temperature
1708	if(ok_slab_ocean)then
1709	do ig=1,ngrid
1710	if (nint(rnat(ig)).eq.0)then
1711	zdtsurf(ig)= (tslab(ig,1) &
1712	+ pctsrf_sic(ig)*(tsea_ice(ig)-tslab(ig,1))-tsurf(ig))/ptimestep
1713	endif
1714	tsurf(ig)=tsurf(ig)+ptimestep*zdtsurf(ig)
1715	enddo
1716
1717	else
1718	tsurf(1:ngrid)=tsurf(1:ngrid)+ptimestep*zdtsurf(1:ngrid)
1719	endif ! end of 'ok_slab_ocean'
1720
1721
1722	! Compute soil temperatures and subsurface heat flux.
1723	if (callsoil) then
1724	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
1725	ptimestep,tsurf,tsoil,capcal,fluxgrd)
1726	endif
1727
1728
1729	if (ok_slab_ocean) then
1730
1731	do ig=1,ngrid
1732
1733	fluxgrdocean(ig)=fluxgrd(ig)
1734	if (nint(rnat(ig)).eq.0) then
1735	capcal(ig)=capcalocean
1736	fluxgrd(ig)=0.
1737	fluxgrdocean(ig)=pctsrf_sic(ig)flux_g(ig)+(1-pctsrf_sic(ig))(dt_hdiff(ig,1)+dt_ekman(ig,1))
1738	do iq=1,nsoilmx
1739	tsoil(ig,iq)=tsurf(ig)
1740	enddo
1741	if (pctsrf_sic(ig).gt.0.5) then
1742	capcal(ig)=capcalseaice
1743	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
1744	capcal(ig)=capcalsno
1745	endif
1746	endif
1747	endif
1748
1749	enddo
1750
1751	endif !end of 'ok_slab_ocean'
1752
1753
1754	! Test energy conservation
1755	if(enertest)then
1756	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
1757	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
1758	endif
1759
1760
1761	!---------------------------------------------------
1762	! VIII. Perform diagnostics and write output files
1763	!---------------------------------------------------
1764
1765	! Note : For output only: the actual model integration is performed in the dynamics.
1766
1767
1768
1769	! Temperature, zonal and meridional winds.
1770	zt(1:ngrid,1:nlayer) = pt(1:ngrid,1:nlayer) + pdt(1:ngrid,1:nlayer)*ptimestep
1771	zu(1:ngrid,1:nlayer) = pu(1:ngrid,1:nlayer) + pdu(1:ngrid,1:nlayer)*ptimestep
1772	zv(1:ngrid,1:nlayer) = pv(1:ngrid,1:nlayer) + pdv(1:ngrid,1:nlayer)*ptimestep
1773
1774	! Recast thermal plume vertical velocity array for outputs
1775	IF (calltherm) THEN
1776	DO ig=1,ngrid
1777	DO l=1,nlayer
1778	zw2_bis(ig,l) = zw2(ig,l)
1779	fm_bis(ig,l) = fm(ig,l)
1780	ENDDO
1781	ENDDO
1782	ENDIF
1783
1784	! Diagnostic.
1785	zdtdyn(1:ngrid,1:nlayer) = (pt(1:ngrid,1:nlayer)-ztprevious(1:ngrid,1:nlayer)) / ptimestep
1786	ztprevious(1:ngrid,1:nlayer) = zt(1:ngrid,1:nlayer)
1787
1788	zdudyn(1:ngrid,1:nlayer) = (pu(1:ngrid,1:nlayer)-zuprevious(1:ngrid,1:nlayer)) / ptimestep
1789	zuprevious(1:ngrid,1:nlayer) = zu(1:ngrid,1:nlayer)
1790
1791	if(firstcall)then
1792	zdtdyn(1:ngrid,1:nlayer)=0.0
1793	zdudyn(1:ngrid,1:nlayer)=0.0
1794	endif
1795
1796	! Dynamical heating diagnostic.
1797	do ig=1,ngrid
1798	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
1799	enddo
1800
1801	! Tracers.
1802	zq(1:ngrid,1:nlayer,1:nq) = pq(1:ngrid,1:nlayer,1:nq) + pdq(1:ngrid,1:nlayer,1:nq)*ptimestep
1803
1804	! Surface pressure.
1805	ps(1:ngrid) = pplev(1:ngrid,1) + pdpsrf(1:ngrid)*ptimestep
1806
1807
1808
1809	! Surface and soil temperature information
1810	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
1811	call planetwide_minval(tsurf(:),Ts2)
1812	call planetwide_maxval(tsurf(:),Ts3)
1813	if(callsoil)then
1814	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
1815	if (is_master) then
1816	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
1817	print*,Ts1,Ts2,Ts3,TsS
1818	end if
1819	else
1820	if (is_master) then
1821	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
1822	print*,Ts1,Ts2,Ts3
1823	endif
1824	end if
1825
1826
1827	! Check the energy balance of the simulation during the run
1828	if(corrk)then
1829
1830	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
1831	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
1832	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
1833	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
1834	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
1835	do ig=1,ngrid
1836	if(fluxtop_dn(ig).lt.0.0)then
1837	print*,'fluxtop_dn has gone crazy'
1838	print*,'fluxtop_dn=',fluxtop_dn(ig)
1839	print*,'tau_col=',tau_col(ig)
1840	print*,'aerosol=',aerosol(ig,:,:)
1841	print*,'temp= ',pt(ig,:)
1842	print*,'pplay= ',pplay(ig,:)
1843	call abort
1844	endif
1845	end do
1846
1847	if(ngrid.eq.1)then
1848	DYN=0.0
1849	endif
1850
1851	if (is_master) then
1852	print*,' ISR ASR OLR GND DYN [W m^-2]'
1853	print*, ISR,ASR,OLR,GND,DYN
1854	endif
1855
1856	if(enertest .and. is_master)then
1857	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
1858	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
1859	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
1860	endif
1861
1862	if(meanOLR .and. is_master)then
1863	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
1864	! to record global radiative balance
1865	open(92,file="rad_bal.out",form='formatted',position='append')
1866	write(92,*) zday,ISR,ASR,OLR
1867	close(92)
1868	open(93,file="tem_bal.out",form='formatted',position='append')
1869	if(callsoil)then
1870	write(93,*) zday,Ts1,Ts2,Ts3,TsS
1871	else
1872	write(93,*) zday,Ts1,Ts2,Ts3
1873	endif
1874	close(93)
1875	endif
1876	endif
1877
1878	endif ! end of 'corrk'
1879
1880
1881	! Diagnostic to test radiative-convective timescales in code.
1882	if(testradtimes)then
1883	open(38,file="tau_phys.out",form='formatted',position='append')
1884	ig=1
1885	do l=1,nlayer
1886	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
1887	enddo
1888	close(38)
1889	print*,'As testradtimes enabled,'
1890	print*,'exiting physics on first call'
1891	call abort
1892	endif
1893
1894
1895	! Compute column amounts (kg m-2) if tracers are enabled.
1896	if(tracer)then
1897	qcol(1:ngrid,1:nq)=0.0
1898	do iq=1,nq
1899	do ig=1,ngrid
1900	qcol(ig,iq) = SUM( zq(ig,1:nlayer,iq) * mass(ig,1:nlayer))
1901	enddo
1902	enddo
1903
1904	! Generalised for arbitrary aerosols now. By LK
1905	reffcol(1:ngrid,1:naerkind)=0.0
1906	if(co2cond.and.(iaero_co2.ne.0))then
1907	call co2_reffrad(ngrid,nlayer,nq,zq,reffrad(1,1,iaero_co2))
1908	do ig=1,ngrid
1909	reffcol(ig,iaero_co2) = SUM(zq(ig,1:nlayer,igcm_co2_ice)reffrad(ig,1:nlayer,iaero_co2)mass(ig,1:nlayer))
1910	enddo
1911	endif
1912	if(water.and.(iaero_h2o.ne.0))then
1913	call h2o_reffrad(ngrid,nlayer,zq(1,1,igcm_h2o_ice),zt, &
1914	reffrad(1,1,iaero_h2o),nueffrad(1,1,iaero_h2o))
1915	do ig=1,ngrid
1916	reffcol(ig,iaero_h2o) = SUM(zq(ig,1:nlayer,igcm_h2o_ice)reffrad(ig,1:nlayer,iaero_h2o)mass(ig,1:nlayer))
1917	enddo
1918	endif
1919
1920	endif ! end of 'tracer'
1921
1922
1923	! Test for water conservation.
1924	if(water)then
1925
1926	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_ice)/totarea_planet,icesrf)
1927	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_vap)/totarea_planet,liqsrf)
1928	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_ice)/totarea_planet,icecol)
1929	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_vap)/totarea_planet,vapcol)
1930
1931	h2otot = icesrf + liqsrf + icecol + vapcol
1932
1933	if (is_master) then
1934	print*,' Total water amount [kg m^-2]: ',h2otot
1935	print*,' Surface ice Surface liq. Atmos. con. Atmos. vap. [kg m^-2] '
1936	print*, icesrf,liqsrf,icecol,vapcol
1937	endif
1938
1939	if(meanOLR .and. is_master)then
1940	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
1941	! to record global water balance
1942	open(98,file="h2o_bal.out",form='formatted',position='append')
1943	write(98,*) zday,icesrf,liqsrf,icecol,vapcol
1944	close(98)
1945	endif
1946	endif
1947
1948	endif
1949
1950
1951	! Calculate RH (Relative Humidity) for diagnostic.
1952	if(water)then
1953
1954	do l = 1, nlayer
1955	do ig=1,ngrid
1956	call Psat_water(zt(ig,l),pplay(ig,l),psat_tmp,qsat(ig,l))
1957	RH(ig,l) = zq(ig,l,igcm_h2o_vap) / qsat(ig,l)
1958	enddo
1959	enddo
1960
1961	! Compute maximum possible H2O column amount (100% saturation).
1962	do ig=1,ngrid
1963	H2Omaxcol(ig) = SUM( qsat(ig,:) * mass(ig,:))
1964	enddo
1965
1966	endif ! end of 'water'
1967
1968
1969	if (is_master) print,'--> Ls =',zls180./pi
1970
1971
1972	!----------------------------------------------------------------------
1973	! Writing NetCDF file "RESTARTFI" at the end of the run
1974	!----------------------------------------------------------------------
1975
1976	! Note: 'restartfi' is stored just before dynamics are stored
1977	! in 'restart'. Between now and the writting of 'restart',
1978	! there will have been the itau=itau+1 instruction and
1979	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
1980	! thus we store for time=time+dtvr
1981
1982
1983
1984	if(lastcall) then
1985	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
1986
1987	! Update surface ice distribution to iterate to steady state if requested
1988	if(ice_update)then
1989
1990	do ig=1,ngrid
1991
1992	delta_ice = (qsurf(ig,igcm_h2o_ice)-ice_initial(ig))
1993
1994	! add multiple years of evolution
1995	qsurf_hist(ig,igcm_h2o_ice) = qsurf_hist(ig,igcm_h2o_ice) + delta_ice*icetstep
1996
1997	! if ice has gone -ve, set to zero
1998	if(qsurf_hist(ig,igcm_h2o_ice).lt.0.0)then
1999	qsurf_hist(ig,igcm_h2o_ice) = 0.0
2000	endif
2001
2002	! if ice is seasonal, set to zero (NEW)
2003	if(ice_min(ig).lt.0.01)then
2004	qsurf_hist(ig,igcm_h2o_ice) = 0.0
2005	endif
2006
2007	enddo
2008
2009	! enforce ice conservation
2010	ice_tot= SUM(qsurf_hist(:,igcm_h2o_ice)*cell_area(:) )/SUM(cell_area(:))
2011	qsurf_hist(:,igcm_h2o_ice) = qsurf_hist(:,igcm_h2o_ice)*(icesrf/ice_tot)
2012
2013	endif
2014	#ifndef MESOSCALE
2015
2016	if (ngrid.ne.1) then
2017	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
2018
2019	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
2020	ptimestep,ztime_fin, &
2021	tsurf,tsoil,emis,q2,qsurf_hist, &
2022	cloudfrac,totcloudfrac,hice, &
2023	rnat,pctsrf_sic,tslab,tsea_ice,sea_ice)
2024	endif
2025	#endif
2026	if(ok_slab_ocean) then
2027	call ocean_slab_final!(tslab, seaice)
2028	end if
2029
2030	endif ! end of 'lastcall'
2031
2032
2033	!-----------------------------------
2034	! Saving statistics :
2035	!-----------------------------------
2036
2037	! Note :("stats" stores and accumulates 8 key variables in file "stats.nc"
2038	! which can later be used to make the statistic files of the run:
2039	! "stats") only possible in 3D runs !!!
2040
2041
2042	if (callstats) then
2043
2044	call wstats(ngrid,"ps","Surface pressure","Pa",2,ps)
2045	call wstats(ngrid,"tsurf","Surface temperature","K",2,tsurf)
2046	call wstats(ngrid,"fluxsurf_lw", &
2047	"Thermal IR radiative flux to surface","W.m-2",2, &
2048	fluxsurf_lw)
2049	call wstats(ngrid,"fluxtop_lw", &
2050	"Thermal IR radiative flux to space","W.m-2",2, &
2051	fluxtop_lw)
2052
2053	! call wstats(ngrid,"fluxsurf_sw", &
2054	! "Solar radiative flux to surface","W.m-2",2, &
2055	! fluxsurf_sw_tot)
2056	! call wstats(ngrid,"fluxtop_sw", &
2057	! "Solar radiative flux to space","W.m-2",2, &
2058	! fluxtop_sw_tot)
2059
2060
2061	call wstats(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
2062	call wstats(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
2063	call wstats(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
2064	!call wstats(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
2065	!call wstats(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
2066	call wstats(ngrid,"p","Pressure","Pa",3,pplay)
2067	call wstats(ngrid,"temp","Atmospheric temperature","K",3,zt)
2068	call wstats(ngrid,"u","Zonal (East-West) wind","m.s-1",3,zu)
2069	call wstats(ngrid,"v","Meridional (North-South) wind","m.s-1",3,zv)
2070	call wstats(ngrid,"w","Vertical (down-up) wind","m.s-1",3,pw)
2071	call wstats(ngrid,"q2","Boundary layer eddy kinetic energy","m2.s-2",3,q2)
2072
2073	if (tracer) then
2074	do iq=1,nq
2075	call wstats(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
2076	call wstats(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2077	'kg m^-2',2,qsurf(1,iq) )
2078	call wstats(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
2079	'kg m^-2',2,qcol(1,iq) )
2080
2081	! call wstats(ngrid,trim(noms(iq))//'_reff', &
2082	! trim(noms(iq))//'_reff', &
2083	! 'm',3,reffrad(1,1,iq))
2084
2085	end do
2086
2087	if (water) then
2088	vmr=zq(1:ngrid,1:nlayer,igcm_h2o_vap)*mugaz/mmol(igcm_h2o_vap)
2089	call wstats(ngrid,"vmr_h2ovapor", &
2090	"H2O vapour volume mixing ratio","mol/mol", &
2091	3,vmr)
2092	endif
2093
2094	endif ! end of 'tracer'
2095
2096	if(watercond.and.CLFvarying)then
2097	call wstats(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
2098	call wstats(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
2099	call wstats(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
2100	call wstats(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
2101	call wstats(ngrid,"RH","relative humidity"," ",3,RH)
2102	endif
2103
2104	if (ok_slab_ocean) then
2105	call wstats(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
2106	call wstats(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
2107	call wstats(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
2108	call wstats(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
2109	call wstats(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
2110	call wstats(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
2111	call wstats(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
2112	call wstats(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
2113	call wstats(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
2114	call wstats(ngrid,"rnat","nature of the surface","",2,rnat)
2115	endif
2116
2117	if(lastcall) then
2118	write (,) "Writing stats..."
2119	call mkstats(ierr)
2120	endif
2121
2122	endif ! end of 'callstats'
2123
2124	#ifndef MESOSCALE
2125
2126	!-----------------------------------------------------------------------------------------------------
2127	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
2128	!
2129	! Note 1 : output with period "ecritphy", set in "run.def"
2130	!
2131	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
2132	! but its preferable to keep all the calls in one place ...
2133	!-----------------------------------------------------------------------------------------------------
2134
2135	call writediagfi(ngrid,"Ls","solar longitude","deg",0,zls*180./pi)
2136	call writediagfi(ngrid,"Lss","sub solar longitude","deg",0,zlss*180./pi)
2137	call writediagfi(ngrid,"RA","right ascension","deg",0,right_ascen*180./pi)
2138	call writediagfi(ngrid,"Declin","solar declination","deg",0,declin*180./pi)
2139	call writediagfi(ngrid,"tsurf","Surface temperature","K",2,tsurf)
2140	call writediagfi(ngrid,"ps","Surface pressure","Pa",2,ps)
2141	call writediagfi(ngrid,"temp","temperature","K",3,zt)
2142	call writediagfi(ngrid,"teta","potential temperature","K",3,zh)
2143	call writediagfi(ngrid,"u","Zonal wind","m.s-1",3,zu)
2144	call writediagfi(ngrid,"v","Meridional wind","m.s-1",3,zv)
2145	call writediagfi(ngrid,"w","Vertical wind","m.s-1",3,pw)
2146	call writediagfi(ngrid,"p","Pressure","Pa",3,pplay)
2147
2148	! Subsurface temperatures
2149	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
2150	! call writediagsoil(ngrid,"temp","temperature","K",3,tsoil)
2151
2152	! Oceanic layers
2153	if(ok_slab_ocean) then
2154	call writediagfi(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
2155	call writediagfi(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
2156	call writediagfi(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
2157	call writediagfi(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
2158	call writediagfi(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
2159	call writediagfi(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
2160	call writediagfi(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
2161	call writediagfi(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
2162	call writediagfi(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
2163	call writediagfi(ngrid,"rnat","nature of the surface","",2,rnat)
2164	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
2165	call writediagfi(ngrid,"latentFlux","latent heat flux","w.m^-2",2,zdqsdif(:,igcm_h2o_vap)*RLVTT)
2166	endif
2167
2168	! Thermal plume model
2169	if (calltherm) then
2170	call writediagfi(ngrid,'entr','Entrainment','kg m$^{-2}$ s$^{-1}$', 3, entr)
2171	call writediagfi(ngrid,'detr','Detrainment','kg m$^{-2}$ s$^{-1}$', 3, detr)
2172	call writediagfi(ngrid,'fm','Mass flux','kg m$^{-2}$ s$^{-1}$', 3, fm_bis)
2173	call writediagfi(ngrid,'w_plm','Squared vertical velocity','m s$^{-1}$', 3, zw2_bis)
2174	call writediagfi(ngrid,'fraca','Updraft fraction','', 3, fraca)
2175	endif
2176
2177	! GW non-oro outputs
2178	if (calllott_nonoro) then
2179	call WRITEDIAGFI(ngrid,"dugwno","GW non-oro dU","m/s2", 3,d_u_hin)
2180	call WRITEDIAGFI(ngrid,"dvgwno","GW non-oro dV","m/s2", 3,d_v_hin)
2181	endif
2182
2183	! Total energy balance diagnostics
2184	if(callrad.and.(.not.newtonian))then
2185
2186	!call writediagfi(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
2187	!call writediagfi(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
2188	call writediagfi(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
2189	call writediagfi(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
2190	call writediagfi(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
2191	call writediagfi(ngrid,"shad","rings"," ", 2, fract)
2192
2193	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
2194	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
2195	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
2196	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
2197	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
2198	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
2199
2200	if(ok_slab_ocean) then
2201	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrdocean)
2202	else
2203	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrd)
2204	endif
2205
2206	call writediagfi(ngrid,"DYN","dynamical heat input","W m-2",2,fluxdyn)
2207
2208	endif ! end of 'callrad'
2209
2210	if(enertest) then
2211
2212	if (calldifv) then
2213
2214	call writediagfi(ngrid,"q2","turbulent kinetic energy","J.kg^-1",3,q2)
2215	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
2216
2217	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
2218	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
2219	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
2220
2221	endif
2222
2223	if (corrk) then
2224	call writediagfi(ngrid,"dEzradsw","radiative heating","w.m^-2",3,dEzradsw)
2225	call writediagfi(ngrid,"dEzradlw","radiative heating","w.m^-2",3,dEzradlw)
2226	endif
2227
2228	if(watercond) then
2229
2230	call writediagfi(ngrid,"lscaledE","heat from largescale","W m-2",2,lscaledE)
2231	call writediagfi(ngrid,"madjdE","heat from moistadj","W m-2",2,madjdE)
2232	call writediagfi(ngrid,"qsatatm","atm qsat"," ",3,qsat)
2233
2234	! call writediagfi(ngrid,"lscaledEz","heat from largescale","W m-2",3,lscaledEz)
2235	! call writediagfi(ngrid,"madjdEz","heat from moistadj","W m-2",3,madjdEz)
2236	! call writediagfi(ngrid,"h2o_max_col","maximum H2O column amount","kg.m^-2",2,H2Omaxcol)
2237
2238	endif
2239
2240	endif ! end of 'enertest'
2241
2242	! Diagnostics of optical thickness
2243	! Warning this is exp(-tau), I let you postproc with -log to have tau itself - JVO 19
2244	if (diagdtau) then
2245	do nw=1,L_NSPECTV
2246	write(str2,'(i2.2)') nw
2247	call writediagfi(ngrid,'dtauv'//str2,'Layer optical thickness attenuation in VI band '//str2,'',1,int_dtauv(:,nlayer:1:-1,nw))
2248	enddo
2249	do nw=1,L_NSPECTI
2250	write(str2,'(i2.2)') nw
2251	call writediagfi(ngrid,'dtaui'//str2,'Layer optical thickness attenuation in IR band '//str2,'',1,int_dtaui(:,nlayer:1:-1,nw))
2252	enddo
2253	endif
2254
2255
2256	! Temporary inclusions for heating diagnostics.
2257	!call writediagfi(ngrid,"zdtsw","SW heating","T s-1",3,zdtsw)
2258	!call writediagfi(ngrid,"zdtlw","LW heating","T s-1",3,zdtlw)
2259	call writediagfi(ngrid,"dtrad","radiative heating","K s-1",3,dtrad)
2260	! call writediagfi(ngrid,"zdtdyn","Dyn. heating","T s-1",3,zdtdyn)
2261
2262	! For Debugging.
2263	!call writediagfi(ngrid,'rnat','Terrain type',' ',2,real(rnat))
2264	!call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
2265
2266
2267	! Output aerosols.
2268	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
2269	call writediagfi(ngrid,'CO2ice_reff','CO2ice_reff','m',3,reffrad(1,1,iaero_co2))
2270	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
2271	call writediagfi(ngrid,'H2Oice_reff','H2Oice_reff','m',3,reffrad(:,:,iaero_h2o))
2272	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
2273	call writediagfi(ngrid,'CO2ice_reffcol','CO2ice_reffcol','um kg m^-2',2,reffcol(1,iaero_co2))
2274	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
2275	call writediagfi(ngrid,'H2Oice_reffcol','H2Oice_reffcol','um kg m^-2',2,reffcol(1,iaero_h2o))
2276
2277	! Output tracers.
2278	if (tracer) then
2279
2280	do iq=1,nq
2281	call writediagfi(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
2282	call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2283	'kg m^-2',2,qsurf_hist(1,iq) )
2284	call writediagfi(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
2285	'kg m^-2',2,qcol(1,iq) )
2286
2287	! call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
2288	! 'kg m^-2',2,qsurf(1,iq) )
2289
2290	if(watercond.or.CLFvarying)then
2291	call writediagfi(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
2292	call writediagfi(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
2293	call writediagfi(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
2294	call writediagfi(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
2295	call writediagfi(ngrid,"RH","relative humidity"," ",3,RH)
2296	endif
2297
2298	if(waterrain)then
2299	call writediagfi(ngrid,"rain","rainfall","kg m-2 s-1",2,zdqsrain)
2300	call writediagfi(ngrid,"snow","snowfall","kg m-2 s-1",2,zdqssnow)
2301	call writediagfi(ngrid,"reevap","reevaporation of precipitation","kg m-2 s-1",2,reevap_precip)
2302	endif
2303
2304	if((hydrology).and.(.not.ok_slab_ocean))then
2305	call writediagfi(ngrid,"hice","oceanic ice height","m",2,hice)
2306	endif
2307
2308	if(ice_update)then
2309	call writediagfi(ngrid,"ice_min","min annual ice","m",2,ice_min)
2310	call writediagfi(ngrid,"ice_ini","initial annual ice","m",2,ice_initial)
2311	endif
2312
2313	do ig=1,ngrid
2314	if(tau_col(ig).gt.1.e3)then
2315	print*,'WARNING: tau_col=',tau_col(ig)
2316	print*,'at ig=',ig,'in PHYSIQ'
2317	endif
2318	end do
2319
2320	call writediagfi(ngrid,"tau_col","Total aerosol optical depth","[]",2,tau_col)
2321
2322	enddo ! end of 'nq' loop
2323
2324	endif ! end of 'tracer'
2325
2326
2327	! Output spectrum.
2328	if(specOLR.and.corrk)then
2329	call writediagspecIR(ngrid,"OLR3D","OLR(lon,lat,band)","W/m^2/cm^-1",3,OLR_nu)
2330	call writediagspecVI(ngrid,"OSR3D","OSR(lon,lat,band)","W/m^2/cm^-1",3,OSR_nu)
2331	call writediagspecVI(ngrid,"GSR3D","GSR(lon,lat,band)","W/m^2/cm^-1",3,GSR_nu)
2332	endif
2333
2334	#else
2335	comm_HR_SW(1:ngrid,1:nlayer) = zdtsw(1:ngrid,1:nlayer)
2336	comm_HR_LW(1:ngrid,1:nlayer) = zdtlw(1:ngrid,1:nlayer)
2337	if ((tracer).and.(water)) then
2338	comm_CLOUDFRAC(1:ngrid,1:nlayer)=cloudfrac(1:ngrid,1:nlayer)
2339	comm_TOTCLOUDFRAC(1:ngrid)=totcloudfrac(1:ngrid)
2340	comm_RAIN(1:ngrid,1:nlayer)=zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
2341	comm_SURFRAIN(1:ngrid)=zdqsrain(1:ngrid)
2342	comm_SNOW(1:ngrid,1:nlayer)=zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
2343	comm_ALBEQ(1:ngrid)=albedo_equivalent(1:ngrid)
2344	comm_H2OICE_REFF(1:ngrid,1:nlayer)=reffrad(1:ngrid,1:nlayer,iaero_h2o)
2345	comm_REEVAP(1:ngrid)=reevap_precip(1:ngrid)
2346	endif
2347	comm_FLUXTOP_DN(1:ngrid)=fluxtop_dn(1:ngrid)
2348	comm_FLUXABS_SW(1:ngrid)=fluxabs_sw(1:ngrid)
2349	comm_FLUXTOP_LW(1:ngrid)=fluxtop_lw(1:ngrid)
2350	comm_FLUXSURF_SW(1:ngrid)=fluxsurf_sw(1:ngrid)
2351	comm_FLUXSURF_LW(1:ngrid)=fluxsurf_lw(1:ngrid)
2352	comm_FLXGRD(1:ngrid)=fluxgrd(1:ngrid)
2353	comm_LSCEZ(1:ngrid,1:nlayer)=lscaledEz(1:ngrid,1:nlayer)
2354	sensibFlux(1:ngrid) = zflubid(1:ngrid) - capcal(1:ngrid)*zdtsdif(1:ngrid) !!! ????
2355
2356	if (turb_resolved) then
2357	open(17,file='lsf.txt',form='formatted',status='old')
2358	rewind(17)
2359	DO l=1,nlayer
2360	read(17,*) lsf_dt(l),lsf_dq(l)
2361	ENDDO
2362	close(17)
2363	do ig=1,ngrid
2364	if ((tracer).and.(water)) then
2365	pdq(ig,:,igcm_h2o_vap) = pdq(ig,:,igcm_h2o_vap) + lsf_dq(:)
2366	endif
2367	pdt(ig,:) = pdt(ig,:) + lsf_dt(:)
2368	comm_HR_DYN(ig,:) = lsf_dt(:)
2369	enddo
2370	endif
2371	#endif
2372
2373	! XIOS outputs
2374	#ifdef CPP_XIOS
2375	! Send fields to XIOS: (NB these fields must also be defined as
2376	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
2377	CALL send_xios_field("ls",zls)
2378
2379	CALL send_xios_field("ps",ps)
2380	CALL send_xios_field("area",cell_area)
2381
2382	CALL send_xios_field("temperature",zt)
2383	CALL send_xios_field("u",zu)
2384	CALL send_xios_field("v",zv)
2385	CALL send_xios_field("omega",omega)
2386
2387	IF (calltherm) THEN
2388	CALL send_xios_field('w_plm',zw2_bis)
2389	CALL send_xios_field('entr',entr)
2390	CALL send_xios_field('detr',detr)
2391	! CALL send_xios_field('fm',fm_bis)
2392	! CALL send_xios_field('fraca',fraca)
2393	ENDIF
2394
2395	IF (water) THEN
2396	CALL send_xios_field('h2o_vap',zq(:,:,igcm_h2o_vap))
2397	CALL send_xios_field('h2o_ice',zq(:,:,igcm_h2o_ice))
2398	ENDIF
2399
2400	CALL send_xios_field("ISR",fluxtop_dn)
2401	CALL send_xios_field("OLR",fluxtop_lw)
2402
2403	if (lastcall.and.is_omp_master) then
2404	write(,) "physiq: call xios_context_finalize"
2405	call xios_context_finalize
2406	endif
2407	#endif
2408
2409	icount=icount+1
2410
2411	end subroutine physiq
2412
2413	end module physiq_mod

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