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physiq_mod.F90 @ 3083

Last change on this file since 3083 was 3081, checked in by yjaziri, 22 months ago

Generic PCM:

Move mu0 (cosinus of solar zenith angle) calculation out of callrad
This was a issue for photochemistry because mu0 was updated only iradia times

Property svn:executable set to *

File size: 118.4 KB

Rev	Line
[1549]	1	module physiq_mod
	2
	3	implicit none
	4
	5	contains
	6
[751]	7	subroutine physiq(ngrid,nlayer,nq, &
[253]	8	firstcall,lastcall, &
	9	pday,ptime,ptimestep, &
	10	pplev,pplay,pphi, &
	11	pu,pv,pt,pq, &
[1312]	12	flxw, &
[1576]	13	pdu,pdv,pdt,pdq,pdpsrf)
[2663]	14
	15	use ioipsl_getin_p_mod, only: getin_p
[2736]	16	use radinc_h, only : L_NSPECTI,L_NSPECTV,naerkind, corrkdir, banddir
[2060]	17	use watercommon_h, only : RLVTT, Psat_water,epsi,su_watercycle, RV, T_h2o_ice_liq
[2728]	18	use generic_cloud_common_h, only : epsi_generic, Psat_generic
[2129]	19	use thermcell_mod, only: init_thermcell_mod
[1216]	20	use gases_h, only: gnom, gfrac
[2736]	21	use radcommon_h, only: sigma, glat, grav, BWNV, WNOI, DWNI, DWNV, WNOV
[2972]	22	use suaer_corrk_mod, only: suaer_corrk
[1308]	23	use radii_mod, only: h2o_reffrad, co2_reffrad
[2898]	24	use aerosol_mod, only: iniaerosol, iaero_co2, iaero_h2o
[1482]	25	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe, &
[2784]	26	dryness
[1216]	27	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
[1327]	28	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
[1216]	29	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
[1543]	30	use geometry_mod, only: latitude, longitude, cell_area
[1542]	31	USE comgeomfi_h, only: totarea, totarea_planet
[1216]	32	USE tracer_h, only: noms, mmol, radius, rho_q, qext, &
	33	alpha_lift, alpha_devil, qextrhor, &
	34	igcm_h2o_ice, igcm_h2o_vap, igcm_dustbin, &
[2728]	35	igcm_co2_ice, nesp, is_chim, is_condensable,constants_epsi_generic
[1525]	36	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
[1669]	37	use phyetat0_mod, only: phyetat0
[2958]	38	use wstats_mod, only: callstats, wstats, mkstats
[1216]	39	use phyredem, only: physdem0, physdem1
[1529]	40	use slab_ice_h, only: capcalocean, capcalseaice,capcalsno, &
	41	noceanmx
[1297]	42	use ocean_slab_mod, only :ocean_slab_init, ocean_slab_ice, &
[1529]	43	ini_surf_heat_transp_mod, &
[1297]	44	ocean_slab_get_vars,ocean_slab_final
	45	use surf_heat_transp_mod,only :init_masquv
[1295]	46	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
	47	use mod_phys_lmdz_para, only : is_master
[1308]	48	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
	49	obliquit, nres, z0
[1524]	50	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
	51	use time_phylmdz_mod, only: daysec
[2446]	52	use callkeys_mod, only: albedo_spectral_mode, calladj, calldifv, &
[2603]	53	calllott_nonoro, callrad, callsoil, nosurf, &
[2446]	54	calltherm, CLFvarying, co2cond, corrk, diagdtau, &
	55	diurnal, enertest, fat1au, flatten, j2, &
	56	hydrology, icetstep, intheat, iradia, kastprof, &
	57	lwrite, mass_redistrib, massplanet, meanOLR, &
	58	nearco2cond, newtonian, noseason_day, oblate, &
	59	ok_slab_ocean, photochem, rings_shadow, rmean, &
[2700]	60	season, sedimentation,generic_condensation, &
	61	sourceevol, specOLR, &
[2446]	62	startphy_file, testradtimes, tlocked, &
	63	tracer, UseTurbDiff, water, watercond, &
[2871]	64	waterrain, generic_rain, global1d, moistadjustment, szangle
[2721]	65	use generic_tracer_index_mod, only: generic_tracer_index
[2299]	66	use nonoro_gwd_ran_mod, only: nonoro_gwd_ran
[2663]	67	use check_fields_mod, only: check_physics_fields
[2595]	68	use conc_mod, only: rnew, cpnew, ini_conc_mod
[1836]	69	use phys_state_var_mod
[2032]	70	use callcorrk_mod, only: callcorrk
[2427]	71	use vdifc_mod, only: vdifc
	72	use turbdiff_mod, only: turbdiff
[1836]	73	use turb_mod, only : q2,sensibFlux,turb_resolved
[2428]	74	use mass_redistribution_mod, only: mass_redistribution
[2701]	75	use condensation_generic_mod, only: condensation_generic
[2736]	76	use datafile_mod, only: datadir
[1836]	77	#ifndef MESOSCALE
[1622]	78	use vertical_layers_mod, only: presnivs, pseudoalt
[1682]	79	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
[1836]	80	#else
[2865]	81	use comm_wrf, only : comm_HR_SW, comm_HR_LW, &
	82	comm_CLOUDFRAC,comm_TOTCLOUDFRAC, comm_RH, &
	83	comm_SURFRAIN,comm_REEVAP,comm_HR_DYN, &
	84	comm_DQICE,comm_DQVAP,comm_ALBEQ, &
	85	comm_FLUXTOP_DN,comm_FLUXABS_SW, &
	86	comm_FLUXTOP_LW,comm_FLUXSURF_SW, &
	87	comm_FLUXSURF_LW,comm_FLXGRD, &
[2871]	88	comm_DTRAIN,comm_DTLSC,comm_H2OICE_REFF, &
	89	comm_LATENT_HF
	90
[1836]	91	#endif
	92
[1623]	93	#ifdef CPP_XIOS
[1622]	94	use xios_output_mod, only: initialize_xios_output, &
	95	update_xios_timestep, &
	96	send_xios_field
[1682]	97	use wxios, only: wxios_context_init, xios_context_finalize
[1623]	98	#endif
[1836]	99
[253]	100	implicit none
	101
	102
	103	!==================================================================
	104	!
	105	! Purpose
	106	! -------
	107	! Central subroutine for all the physics parameterisations in the
	108	! universal model. Originally adapted from the Mars LMDZ model.
	109	!
	110	! The model can be run without or with tracer transport
	111	! depending on the value of "tracer" in file "callphys.def".
	112	!
	113	!
	114	! It includes:
	115	!
[1477]	116	! I. Initialization :
	117	! I.1 Firstcall initializations.
	118	! I.2 Initialization for every call to physiq.
[253]	119	!
[1477]	120	! II. Compute radiative transfer tendencies (longwave and shortwave) :
	121	! II.a Option 1 : Call correlated-k radiative transfer scheme.
	122	! II.b Option 2 : Call Newtonian cooling scheme.
	123	! II.c Option 3 : Atmosphere has no radiative effect.
	124	!
	125	! III. Vertical diffusion (turbulent mixing) :
	126	!
[2060]	127	! IV. Convection :
	128	! IV.a Thermal plume model
	129	! IV.b Dry convective adjusment
[1477]	130	!
	131	! V. Condensation and sublimation of gases (currently just CO2).
	132	!
	133	! VI. Tracers
	134	! VI.1. Water and water ice.
[1801]	135	! VI.2 Photochemistry
	136	! VI.3. Aerosols and particles.
	137	! VI.4. Updates (pressure variations, surface budget).
	138	! VI.5. Slab Ocean.
	139	! VI.6. Surface Tracer Update.
[1477]	140	!
	141	! VII. Surface and sub-surface soil temperature.
	142	!
	143	! VIII. Perform diagnostics and write output files.
	144	!
	145	!
[253]	146	! arguments
	147	! ---------
	148	!
[1477]	149	! INPUT
[253]	150	! -----
[1477]	151	!
[253]	152	! ngrid Size of the horizontal grid.
	153	! nlayer Number of vertical layers.
[1477]	154	! nq Number of advected fields.
	155	!
	156	! firstcall True at the first call.
	157	! lastcall True at the last call.
	158	!
	159	! pday Number of days counted from the North. Spring equinoxe.
	160	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
	161	! ptimestep timestep (s).
	162	!
	163	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
	164	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
	165	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
	166	!
	167	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
	168	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
	169	!
	170	! pt(ngrid,nlayer) Temperature (K).
	171	!
	172	! pq(ngrid,nlayer,nq) Advected fields.
	173	!
[1216]	174	! pudyn(ngrid,nlayer) \
[253]	175	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
[1477]	176	! ptdyn(ngrid,nlayer) / corresponding variables.
[253]	177	! pqdyn(ngrid,nlayer,nq) /
[1312]	178	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
[253]	179	!
[1477]	180	! OUTPUT
[253]	181	! ------
	182	!
[1308]	183	! pdu(ngrid,nlayer) \
	184	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
	185	! pdt(ngrid,nlayer) / variables due to physical processes.
	186	! pdq(ngrid,nlayer) /
[253]	187	! pdpsrf(ngrid) /
	188	!
	189	!
	190	! Authors
	191	! -------
[1524]	192	! Frederic Hourdin 15/10/93
	193	! Francois Forget 1994
	194	! Christophe Hourdin 02/1997
[253]	195	! Subroutine completely rewritten by F. Forget (01/2000)
	196	! Water ice clouds: Franck Montmessin (update 06/2003)
	197	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
	198	! New correlated-k radiative scheme: R. Wordsworth (2009)
	199	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
	200	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
	201	! To F90: R. Wordsworth (2010)
[594]	202	! New turbulent diffusion scheme: J. Leconte (2012)
[716]	203	! Loops converted to F90 matrix format: J. Leconte (2012)
[787]	204	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
[1477]	205	! Purge of the code : M. Turbet (2015)
[1801]	206	! Photochemical core developped by F. Lefevre: B. Charnay (2017)
[253]	207	!==================================================================
	208
	209
	210	! 0. Declarations :
	211	! ------------------
	212
[1669]	213	include "netcdf.inc"
[253]	214
	215	! Arguments :
	216	! -----------
	217
[1477]	218	! INPUTS:
[253]	219	! -------
	220
[1477]	221	integer,intent(in) :: ngrid ! Number of atmospheric columns.
	222	integer,intent(in) :: nlayer ! Number of atmospheric layers.
	223	integer,intent(in) :: nq ! Number of tracers.
	224
	225	logical,intent(in) :: firstcall ! Signals first call to physics.
	226	logical,intent(in) :: lastcall ! Signals last call to physics.
	227
	228	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
	229	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
	230	real,intent(in) :: ptimestep ! Physics timestep (s).
	231	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
	232	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
	233	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
	234	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
	235	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
	236	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
	237	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
	238	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
[253]	239
[1477]	240	! OUTPUTS:
[253]	241	! --------
	242
[1477]	243	! Physical tendencies :
	244
	245	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
	246	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
	247	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
	248	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
	249	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
	250
[253]	251	! Local saved variables:
	252	! ----------------------
[1622]	253	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
	254	integer,save :: icount ! Counter of calls to physiq during the run.
	255	!$OMP THREADPRIVATE(day_ini,icount)
	256
[253]	257	! Local variables :
	258	! -----------------
	259
[1477]	260	! Aerosol (dust or ice) extinction optical depth at reference wavelength
[253]	261	! for the "naerkind" optically active aerosols:
	262
[2972]	263	real,save,allocatable :: aerosol(:,:,:) ! Aerosols
	264	!$OMP THREADPRIVATE(aerosol)
[1477]	265	real zh(ngrid,nlayer) ! Potential temperature (K).
	266	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
[1877]	267	real omega(ngrid,nlayer) ! omega velocity (Pa/s, >0 when downward)
[1477]	268
[2721]	269	integer l,ig,ierr,iq,nw,isoil,iesp, igcm_generic_vap, igcm_generic_ice
[2722]	270	logical call_ice_vap_generic ! to call only one time the ice/vap pair of a tracer
[1161]	271
[1477]	272	real zls ! Solar longitude (radians).
	273	real zlss ! Sub solar point longitude (radians).
	274	real zday ! Date (time since Ls=0, calculated in sols).
	275	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
	276	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
[253]	277
[2060]	278	! VARIABLES for the thermal plume model
	279
[2232]	280	real f(ngrid) ! Mass flux norm
	281	real fm(ngrid,nlayer+1) ! Mass flux
	282	real fm_bis(ngrid,nlayer) ! Recasted fm
	283	real entr(ngrid,nlayer) ! Entrainment
	284	real detr(ngrid,nlayer) ! Detrainment
[2105]	285	real dqevap(ngrid,nlayer,nq) ! water tracer mass mixing ratio variations due to evaporation
	286	real dtevap(ngrid,nlayer) ! temperature variation due to evaporation
	287	real zqtherm(ngrid,nlayer,nq) ! vapor mass mixing ratio after evaporation
	288	real zttherm(ngrid,nlayer) ! temperature after evaporation
[2232]	289	real fraca(ngrid,nlayer+1) ! Fraction of the surface that plumes occupies
	290	real zw2(ngrid,nlayer+1) ! Vertical speed
	291	real zw2_bis(ngrid,nlayer) ! Recasted zw2
	292
[1477]	293	! TENDENCIES due to various processes :
[253]	294
[1477]	295	! For Surface Temperature : (K/s)
	296	real zdtsurf(ngrid) ! Cumulated tendencies.
	297	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
	298	real zdtsurfc(ngrid) ! Condense_co2 routine.
	299	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
	300	real zdtsurf_hyd(ngrid) ! Hydrol routine.
	301
	302	! For Atmospheric Temperatures : (K/s)
	303	real dtlscale(ngrid,nlayer) ! Largescale routine.
[2890]	304	real dt_generic_condensation(ngrid,nlayer) ! condensation_generic routine.
[1477]	305	real zdtc(ngrid,nlayer) ! Condense_co2 routine.
[2060]	306	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
	307	real zdttherm(ngrid,nlayer) ! Calltherm routine.
[1477]	308	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
	309	real zdtrain(ngrid,nlayer) ! Rain routine.
[2721]	310	real zdtrain_generic(ngrid,nlayer) ! Rain_generic routine.
[1477]	311	real dtmoist(ngrid,nlayer) ! Moistadj routine.
	312	real dt_ekman(ngrid,noceanmx), dt_hdiff(ngrid,noceanmx) ! Slab_ocean routine.
	313	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
[2542]	314	real zdtchim(ngrid,nlayer) ! Calchim routine.
[1477]	315
	316	! For Surface Tracers : (kg/m2/s)
	317	real dqsurf(ngrid,nq) ! Cumulated tendencies.
[1484]	318	real zdqsurfc(ngrid) ! Condense_co2 routine.
[1477]	319	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
	320	real zdqssed(ngrid,nq) ! Callsedim routine.
	321	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
	322	real zdqsrain(ngrid), zdqssnow(ngrid) ! Rain routine.
[2721]	323	real zdqsrain_generic(ngrid,nq), zdqssnow_generic(ngrid,nq) ! Rain_generic routine.
[1477]	324	real dqs_hyd(ngrid,nq) ! Hydrol routine.
[1859]	325	real reevap_precip(ngrid) ! re-evaporation flux of precipitation (integrated over the atmospheric column)
[2721]	326	real reevap_precip_generic(ngrid,nq)
[1477]	327
	328	! For Tracers : (kg/kg_of_air/s)
	329	real zdqc(ngrid,nlayer,nq) ! Condense_co2 routine.
	330	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
	331	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
	332	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
[2129]	333	real zdqtherm(ngrid,nlayer,nq) ! Calltherm routine.
[1477]	334	real zdqsed(ngrid,nlayer,nq) ! Callsedim routine.
	335	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
	336	real zdqrain(ngrid,nlayer,nq) ! Rain routine.
	337	real dqmoist(ngrid,nlayer,nq) ! Moistadj routine.
	338	real dqvaplscale(ngrid,nlayer) ! Largescale routine.
	339	real dqcldlscale(ngrid,nlayer) ! Largescale routine.
[2721]	340	real dqvaplscale_generic(ngrid,nlayer,nq) ! condensation_generic routine.
	341	real dqcldlscale_generic(ngrid,nlayer,nq) ! condensation_generic routine.
	342	real dq_rain_generic_vap(ngrid,nlayer,nq) ! rain_generic routine
	343	real dq_rain_generic_cld(ngrid,nlayer,nq) ! rain_generic routine
[2542]	344	REAL,allocatable,save :: zdqchim(:,:,:) ! Calchim_asis routine
	345	REAL,allocatable,save :: zdqschim(:,:) ! Calchim_asis routine
[2972]	346	!$OMP THREADPRIVATE(zdqchim,zdqschim)
[1801]	347
	348	REAL array_zero1(ngrid)
	349	REAL array_zero2(ngrid,nlayer)
[1477]	350
	351	! For Winds : (m/s/s)
[2060]	352	real zdvadj(ngrid,nlayer), zduadj(ngrid,nlayer) ! Convadj routine.
	353	real zdutherm(ngrid,nlayer), zdvtherm(ngrid,nlayer) ! Calltherm routine.
	354	real zdumr(ngrid,nlayer), zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
	355	real zdvdif(ngrid,nlayer), zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
	356	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
	357	real zdhadj(ngrid,nlayer) ! Convadj routine.
[1477]	358
	359	! For Pressure and Mass :
	360	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
	361	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
	362	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
[253]	363
[1477]	364
	365
	366	! Local variables for LOCAL CALCULATIONS:
	367	! ---------------------------------------
[787]	368	real zflubid(ngrid)
[1308]	369	real zplanck(ngrid),zpopsk(ngrid,nlayer)
[253]	370	real ztim1,ztim2,ztim3, z1,z2
	371	real ztime_fin
[1308]	372	real zdh(ngrid,nlayer)
[1194]	373	real gmplanet
[1297]	374	real taux(ngrid),tauy(ngrid)
[1194]	375
[253]	376
[1477]	377	! local variables for DIAGNOSTICS : (diagfi & stat)
	378	! -------------------------------------------------
	379	real ps(ngrid) ! Surface Pressure.
	380	real zt(ngrid,nlayer) ! Atmospheric Temperature.
	381	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
	382	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
	383	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
	384	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
[1637]	385	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
[253]	386
[1477]	387	real reff(ngrid,nlayer) ! Effective dust radius (used if doubleq=T).
	388	real vmr(ngrid,nlayer) ! volume mixing ratio
[253]	389	real time_phys
[597]	390
[1477]	391	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
	392
	393	real qcol(ngrid,nq) ! Tracer Column Mass (kg/m2).
[253]	394
	395	! included by RW for H2O Manabe scheme
[1477]	396	real rneb_man(ngrid,nlayer) ! H2O cloud fraction (moistadj).
	397	real rneb_lsc(ngrid,nlayer) ! H2O cloud fraction (large scale).
[253]	398
	399
[594]	400	! to test energy conservation (RW+JL)
[1308]	401	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
[651]	402	real dEtot, dEtots, AtmToSurf_TurbFlux
[959]	403	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
[1315]	404	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
[1477]	405
[594]	406	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
[1477]	407
	408	real dtmoist_max,dtmoist_min
[1295]	409	real dItot, dItot_tmp, dVtot, dVtot_tmp
[253]	410
	411
[1477]	412	real h2otot ! Total Amount of water. For diagnostic.
	413	real icesrf,liqsrf,icecol,vapcol ! Total Amounts of water (ice,liq,vap). For diagnostic.
[1295]	414	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
[1477]	415	logical,save :: watertest
[1315]	416	!$OMP THREADPRIVATE(watertest)
[253]	417
[1477]	418	real qsat(ngrid,nlayer) ! Water Vapor Volume Mixing Ratio at saturation (kg/kg_of_air).
	419	real RH(ngrid,nlayer) ! Relative humidity.
	420	real psat_tmp
[2724]	421
	422	real qsat_generic(ngrid,nlayer,nq) ! generic condensable tracers (GCS) specific concentration at saturation (kg/kg_of_air).
	423	real RH_generic(ngrid,nlayer,nq) ! generic condensable tracers (GCS) Relative humidity.
	424	real rneb_generic(ngrid,nlayer,nq) ! GCS cloud fraction (generic condensation).
	425	real psat_tmp_generic
[2726]	426	real, save :: metallicity ! metallicity of planet --- is not used here, but necessary to call function Psat_generic
	427	!$OMP THREADPRIVATE(metallicity)
	428
[2890]	429	real reffrad_generic_zeros_for_wrf(ngrid,nlayer) ! !!! this is temporary, it is only a list of zeros, it will be replaced when a generic aerosol will be implemented
	430
[1477]	431	logical clearsky ! For double radiative transfer call. By BC
	432
[1482]	433	! For Clear Sky Case.
[2485]	434	real fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
[1482]	435	real tau_col1(ngrid) ! For aerosol optical depth diagnostic.
[2537]	436	real OLR_nu1(ngrid,L_NSPECTI) ! Clear sky TOA LW radiation in each IR band
	437	real OSR_nu1(ngrid,L_NSPECTV) ! Clear sky TOA SW radiation in each VI band
	438	real GSR_nu1(ngrid,L_NSPECTV) ! Clear sky Surface SW radiation in each VI band
[2133]	439	real int_dtaui1(ngrid,nlayer,L_NSPECTI),int_dtauv1(ngrid,nlayer,L_NSPECTV) ! For optical thickness diagnostics.
[253]	440	real tf, ntf
	441
[1477]	442	real nconsMAX, vdifcncons(ngrid), cadjncons(ngrid) ! Vdfic water conservation test. By RW
[253]	443
[1477]	444	real muvar(ngrid,nlayer+1) ! For Runaway Greenhouse 1D study. By RW
[253]	445
[2972]	446	real,save,allocatable :: reffcol(:,:)
	447	!$OMP THREADPRIVATE(reffcol)
[253]	448
[1477]	449	! Sourceevol for 'accelerated ice evolution'. By RW
[305]	450	real delta_ice,ice_tot
[253]	451	integer num_run
[728]	452	logical,save :: ice_update
[2299]	453	! Non-oro GW tendencies
	454	REAL d_u_hin(ngrid,nlayer), d_v_hin(ngrid,nlayer)
	455	REAL d_t_hin(ngrid,nlayer)
	456	! Diagnostics 2D of gw_nonoro
	457	REAL zustrhi(ngrid), zvstrhi(ngrid)
[996]	458
[1297]	459
	460	real :: tsurf2(ngrid)
[2485]	461	real :: flux_o(ngrid),flux_g(ngrid)
[1297]	462	real :: flux_sens_lat(ngrid)
	463	real :: qsurfint(ngrid,nq)
[2019]	464	#ifdef MESOSCALE
	465	REAL :: lsf_dt(nlayer)
	466	REAL :: lsf_dq(nlayer)
	467	#endif
[1297]	468
[2663]	469	! flags to trigger extra sanity checks
	470	logical, save :: check_physics_inputs=.false.
	471	logical, save :: check_physics_outputs=.false.
	472	!$OPM THREADPRIVATE(check_physics_inputs,check_physics_outputs)
	473
[2133]	474	! Misc
	475	character*2 :: str2
[2736]	476	character(len=10) :: tmp1
	477	character(len=10) :: tmp2
[1477]	478	!==================================================================================================
[253]	479
	480	! -----------------
[1477]	481	! I. INITIALISATION
	482	! -----------------
[253]	483
[1477]	484	! --------------------------------
	485	! I.1 First Call Initialisation.
	486	! --------------------------------
[253]	487	if (firstcall) then
[2867]	488	call getin_p("check_physics_inputs", check_physics_inputs)
	489	call getin_p("check_physics_outputs", check_physics_outputs)
[2663]	490
[2867]	491	! Allocate saved arrays (except for 1D model, where this has already
	492	! been done)
[2010]	493	#ifndef MESOSCALE
[2867]	494	if (ngrid>1) call phys_state_var_init(nq)
[2010]	495	#endif
[858]	496
[1477]	497	! Variables set to 0
[253]	498	! ~~~~~~~~~~~~~~~~~~
	499	dtrad(:,:) = 0.0
	500	fluxrad(:) = 0.0
	501	tau_col(:) = 0.0
	502	zdtsw(:,:) = 0.0
	503	zdtlw(:,:) = 0.0
[726]	504
[1477]	505	! Initialize tracer names, indexes and properties.
	506	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	507	IF (.NOT.ALLOCATED(noms)) ALLOCATE(noms(nq)) ! (because noms is an argument of physdem1 whether or not tracer is on)
[253]	508	if (tracer) then
[2785]	509	call initracer(ngrid,nq)
[1801]	510	if(photochem) then
	511	call ini_conc_mod(ngrid,nlayer)
[2542]	512	IF (.NOT.ALLOCATED(zdqchim)) ALLOCATE(zdqchim(ngrid,nlayer,nesp))
	513	IF (.NOT.ALLOCATED(zdqschim)) ALLOCATE(zdqschim(ngrid,nesp))
[1801]	514	endif
[1477]	515	endif
[2803]	516	! Initialize aerosol indexes.
	517	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~
[2898]	518	call iniaerosol
[2972]	519	! allocate related local arrays
	520	! (need be allocated instead of automatic because of "naerkind")
	521	allocate(aerosol(ngrid,nlayer,naerkind))
	522	allocate(reffcol(ngrid,naerkind))
[253]	523
[1682]	524	#ifdef CPP_XIOS
[2867]	525	! Initialize XIOS context
	526	write(,) "physiq: call wxios_context_init"
	527	CALL wxios_context_init
[1682]	528	#endif
[726]	529
[1477]	530	! Read 'startfi.nc' file.
[253]	531	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1836]	532	#ifndef MESOSCALE
[1669]	533	call phyetat0(startphy_file, &
	534	ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
[1477]	535	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf, &
	536	cloudfrac,totcloudfrac,hice, &
	537	rnat,pctsrf_sic,tslab, tsea_ice,sea_ice)
[1836]	538	#else
[2867]	539	day_ini = pday
[1836]	540	#endif
	541
	542	#ifndef MESOSCALE
[1669]	543	if (.not.startphy_file) then
	544	! additionnal "academic" initialization of physics
	545	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
	546	tsurf(:)=pt(:,1)
	547	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
	548	do isoil=1,nsoilmx
	549	tsoil(1:ngrid,isoil)=tsurf(1:ngrid)
	550	enddo
	551	if (is_master) write(,) "Physiq: initializing day_ini to pdat !"
	552	day_ini=pday
	553	endif
[1836]	554	#endif
[253]	555	if (pday.ne.day_ini) then
[2299]	556	write(,) "ERROR in physiq.F90:"
	557	write(,) "bad synchronization between physics and dynamics"
	558	write(,) "dynamics day: ",pday
	559	write(,) "physics day: ",day_ini
	560	stop
[253]	561	endif
	562
	563	write (,) 'In physiq day_ini =', day_ini
	564
[1482]	565	! Initialize albedo calculation.
	566	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	567	albedo(:,:)=0.0
[2867]	568	albedo_bareground(:)=0.0
	569	albedo_snow_SPECTV(:)=0.0
	570	albedo_co2_ice_SPECTV(:)=0.0
[1482]	571	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground,albedo_snow_SPECTV,albedo_co2_ice_SPECTV)
	572
	573	! Initialize orbital calculation.
	574	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	575	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
	576
	577
	578	if(tlocked)then
	579	print*,'Planet is tidally locked at resonance n=',nres
	580	print*,'Make sure you have the right rotation rate!!!'
	581	endif
	582
[1477]	583	! Initialize oceanic variables.
	584	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	585
	586	if (ok_slab_ocean)then
	587
	588	call ocean_slab_init(ngrid,ptimestep, tslab, &
[1477]	589	sea_ice, pctsrf_sic)
[1297]	590
[1529]	591	call ini_surf_heat_transp_mod()
	592
[1477]	593	knindex(:) = 0
[1297]	594
[1477]	595	do ig=1,ngrid
[1297]	596	zmasq(ig)=1
	597	knindex(ig) = ig
	598	if (nint(rnat(ig)).eq.0) then
	599	zmasq(ig)=0
	600	endif
[1477]	601	enddo
[1297]	602
[1308]	603	CALL init_masquv(ngrid,zmasq)
[1297]	604
[1477]	605	endif ! end of 'ok_slab_ocean'.
[1297]	606
	607
[1477]	608	! Initialize soil.
	609	! ~~~~~~~~~~~~~~~~
[253]	610	if (callsoil) then
[1477]	611
[787]	612	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
[1477]	613	ptimestep,tsurf,tsoil,capcal,fluxgrd)
[1297]	614
	615	if (ok_slab_ocean) then
	616	do ig=1,ngrid
	617	if (nint(rnat(ig)).eq.2) then
[1477]	618	capcal(ig)=capcalocean
	619	if (pctsrf_sic(ig).gt.0.5) then
	620	capcal(ig)=capcalseaice
	621	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
	622	capcal(ig)=capcalsno
	623	endif
	624	endif
[1297]	625	endif
	626	enddo
[1477]	627	endif ! end of 'ok_slab_ocean'.
[1297]	628
[1477]	629	else ! else of 'callsoil'.
	630
[253]	631	print*,'WARNING! Thermal conduction in the soil turned off'
[918]	632	capcal(:)=1.e6
[952]	633	fluxgrd(:)=intheat
	634	print*,'Flux from ground = ',intheat,' W m^-2'
[1477]	635
	636	endif ! end of 'callsoil'.
	637
[253]	638	icount=1
	639
[1477]	640	! Decide whether to update ice at end of run.
	641	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	642	ice_update=.false.
	643	if(sourceevol)then
[1315]	644	!$OMP MASTER
[955]	645	open(128,file='num_run',form='formatted', &
	646	status="old",iostat=ierr)
	647	if (ierr.ne.0) then
[1477]	648	write(,) "physiq: Error! No num_run file!"
	649	write(,) " (which is needed for sourceevol option)"
	650	stop
[955]	651	endif
[253]	652	read(128,*) num_run
	653	close(128)
[1315]	654	!$OMP END MASTER
	655	!$OMP BARRIER
[253]	656
[365]	657	if(num_run.ne.0.and.mod(num_run,2).eq.0)then
[253]	658	print*,'Updating ice at end of this year!'
	659	ice_update=.true.
	660	ice_min(:)=1.e4
[1477]	661	endif
	662
	663	endif ! end of 'sourceevol'.
[253]	664
[1477]	665
	666	! Here is defined the type of the surface : Continent or Ocean.
	667	! BC2014 : This is now already done in newstart.
	668	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	669	if (.not.ok_slab_ocean) then
[1477]	670
[1297]	671	rnat(:)=1.
[2603]	672	if (.not.nosurf) then ! inertiedat only defined if there is a surface
	673	do ig=1,ngrid
[1477]	674	if(inertiedat(ig,1).gt.1.E4)then
	675	rnat(ig)=0
	676	endif
[2603]	677	enddo
[253]	678
[2603]	679	print*,'WARNING! Surface type currently decided by surface inertia'
	680	print*,'This should be improved e.g. in newstart.F'
	681	endif
[1477]	682	endif ! end of 'ok_slab_ocean'.
[253]	683
[1477]	684
	685	! Initialize surface history variable.
[253]	686	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[728]	687	qsurf_hist(:,:)=qsurf(:,:)
[253]	688
[1637]	689	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
	690	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	691	ztprevious(:,:)=pt(:,:)
[1637]	692	zuprevious(:,:)=pu(:,:)
[253]	693
	694	! Set temperature just above condensation temperature (for Early Mars)
	695	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	696	if(nearco2cond) then
	697	write(,)' WARNING! Starting at Tcond+1K'
	698	do l=1, nlayer
	699	do ig=1,ngrid
	700	pdt(ig,l)= ((-3167.8)/(log(.01*pplay(ig,l))-23.23)+4 &
	701	-pt(ig,l)) / ptimestep
	702	enddo
	703	enddo
	704	endif
	705
[1477]	706	if(meanOLR)then
	707	call system('rm -f rad_bal.out') ! to record global radiative balance.
	708	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
	709	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
[253]	710	endif
	711
	712
[1477]	713	watertest=.false.
	714	if(water)then ! Initialize variables for water cycle
	715
[365]	716	if(enertest)then
	717	watertest = .true.
	718	endif
	719
[728]	720	if(ice_update)then
	721	ice_initial(:)=qsurf(:,igcm_h2o_ice)
	722	endif
[253]	723
	724	endif
[2726]	725
	726	! Set metallicity for GCS
	727	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	728	metallicity=0.0 ! default value --- is not used here but necessary to call function Psat_generic
	729	call getin_p("metallicity",metallicity) ! --- is not used here but necessary to call function Psat_generic
[1477]	730
[2060]	731	! Set some parameters for the thermal plume model
	732	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	733	if (calltherm) then
[2176]	734	CALL init_thermcell_mod(g, rcp, r, pi, T_h2o_ice_liq, RV)
[2060]	735	endif
	736
[253]	737	call su_watercycle ! even if we don't have a water cycle, we might
	738	! need epsi for the wvp definitions in callcorrk.F
[2060]	739	! or RETV, RLvCp for the thermal plume model
[1836]	740	#ifndef MESOSCALE
[1477]	741	if (ngrid.ne.1) then ! Note : no need to create a restart file in 1d.
[1542]	742	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
[2299]	743	ptimestep,pday+nday,time_phys,cell_area, &
	744	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
[1216]	745	endif
[1836]	746	#endif
[2736]	747	if (corrk) then
	748	! We initialise the spectral grid here instead of
	749	! at firstcall of callcorrk so we can output XspecIR, XspecVI
	750	! when using Dynamico
	751	print*, "physiq_mod: Correlated-k data base folder:",trim(datadir)
	752	call getin_p("corrkdir",corrkdir)
	753	print*,"corrkdir = ", corrkdir
[2802]	754	write (tmp1, '(i4)') L_NSPECTI
	755	write (tmp2, '(i4)') L_NSPECTV
[2736]	756	banddir=trim(trim(adjustl(tmp1))//'x'//trim(adjustl(tmp2)))
	757	banddir=trim(trim(adjustl(corrkdir))//'/'//trim(adjustl(banddir)))
	758	call setspi !Basic infrared properties.
	759	call setspv ! Basic visible properties.
	760	call sugas_corrk ! Set up gaseous absorption properties.
	761	call suaer_corrk ! Set up aerosol optical properties.
	762	endif
[1622]	763	! XIOS outputs
	764	#ifdef CPP_XIOS
	765
	766	write(,) "physiq: call initialize_xios_output"
	767	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
[2736]	768	year_day,presnivs,pseudoalt,WNOI,WNOV)
[1622]	769	#endif
[1682]	770	write(,) "physiq: end of firstcall"
[1477]	771	endif ! end of 'firstcall'
[253]	772
[2663]	773	if (check_physics_inputs) then
	774	!check the validity of input fields coming from the dynamics
	775	call check_physics_fields("begin physiq:", pt, pu, pv, pplev, pq)
	776	endif
	777
[1477]	778	! ------------------------------------------------------
	779	! I.2 Initializations done at every physical timestep:
	780	! ------------------------------------------------------
	781
[1622]	782	#ifdef CPP_XIOS
	783	! update XIOS time/calendar
	784	call update_xios_timestep
	785	#endif
	786
[1477]	787	! Initialize various variables
	788	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	789
[253]	790	if ( .not.nearco2cond ) then
[1308]	791	pdt(1:ngrid,1:nlayer) = 0.0
[1477]	792	endif
	793	zdtsurf(1:ngrid) = 0.0
[1308]	794	pdq(1:ngrid,1:nlayer,1:nq) = 0.0
[1477]	795	dqsurf(1:ngrid,1:nq)= 0.0
	796	pdu(1:ngrid,1:nlayer) = 0.0
	797	pdv(1:ngrid,1:nlayer) = 0.0
[787]	798	pdpsrf(1:ngrid) = 0.0
[1477]	799	zflubid(1:ngrid) = 0.0
[1297]	800	flux_sens_lat(1:ngrid) = 0.0
	801	taux(1:ngrid) = 0.0
	802	tauy(1:ngrid) = 0.0
[253]	803
[1477]	804	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
[1297]	805
[1477]	806	! Compute Stellar Longitude (Ls), and orbital parameters.
	807	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	808	if (season) then
	809	call stellarlong(zday,zls)
	810	else
[2300]	811	call stellarlong(noseason_day,zls)
[253]	812	end if
	813
[1329]	814	call orbite(zls,dist_star,declin,right_ascen)
[1477]	815
[1329]	816	if (tlocked) then
	817	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
	818	elseif (diurnal) then
[1524]	819	zlss=-2.pi(zday-.5)
[1329]	820	else if(diurnal .eqv. .false.) then
	821	zlss=9999.
	822	endif
[1194]	823
	824
[1477]	825	! Compute variations of g with latitude (oblate case).
	826	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	827	if (oblate .eqv. .false.) then
	828	glat(:) = g
	829	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
	830	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute glat (else set oblate=.false.)'
	831	call abort
	832	else
	833	gmplanet = MassPlanetgrav1e24
	834	do ig=1,ngrid
[1542]	835	glat(ig)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
[1477]	836	end do
	837	endif
[1297]	838
[1477]	839	! Compute geopotential between layers.
	840	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1308]	841	zzlay(1:ngrid,1:nlayer)=pphi(1:ngrid,1:nlayer)
	842	do l=1,nlayer
[1477]	843	zzlay(1:ngrid,l)= zzlay(1:ngrid,l)/glat(1:ngrid)
[1194]	844	enddo
[728]	845
[787]	846	zzlev(1:ngrid,1)=0.
[728]	847
[253]	848	do l=2,nlayer
	849	do ig=1,ngrid
	850	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
	851	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
	852	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
	853	enddo
[1477]	854	enddo
[253]	855
[2987]	856	!Altitude of top interface (nlayer+1), using the thicknesss of the level below the top one. LT22
	857
	858	zzlev(1:ngrid,nlayer+1) = 2*zzlev(1:ngrid,nlayer)-zzlev(1:ngrid,nlayer-1)
	859
[1477]	860	! Compute potential temperature
	861	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
	862	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[597]	863	do l=1,nlayer
[787]	864	do ig=1,ngrid
[253]	865	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
[597]	866	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
[1194]	867	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
[1542]	868	massarea(ig,l)=mass(ig,l)*cell_area(ig)
[253]	869	enddo
	870	enddo
	871
[1312]	872	! Compute vertical velocity (m/s) from vertical mass flux
[1346]	873	! w = F / (rhoarea) and rho = P/(rT)
[1477]	874	! But first linearly interpolate mass flux to mid-layers
	875	do l=1,nlayer-1
	876	pw(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
	877	enddo
	878	pw(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
	879	do l=1,nlayer
	880	pw(1:ngrid,l)=(pw(1:ngrid,l)rpt(1:ngrid,l)) / &
[1542]	881	(pplay(1:ngrid,l)*cell_area(1:ngrid))
[1477]	882	enddo
[1877]	883	! omega in Pa/s
	884	do l=1,nlayer-1
	885	omega(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
	886	enddo
	887	omega(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
	888	do l=1,nlayer
	889	omega(1:ngrid,l)=g*omega(1:ngrid,l)/cell_area(1:ngrid)
	890	enddo
[1194]	891
[1801]	892	! ----------------------------------------------------------------
	893	! Compute mean mass, cp, and R
	894	! --------------------------------
[2058]	895	#ifndef MESOSCALE
[1801]	896	if(photochem) then
	897	call concentrations(ngrid,nlayer,nq,pplay,pt,pdt,pq,pdq,ptimestep)
	898	endif
[2058]	899	#endif
[1801]	900
[1477]	901	!---------------------------------
	902	! II. Compute radiative tendencies
	903	!---------------------------------
[253]	904
[3081]	905	! Compute local stellar zenith angles
	906	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	907	if (tlocked) then
	908	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
	909	ztim1=SIN(declin)
	910	ztim2=COS(declin)*COS(zlss)
	911	ztim3=COS(declin)*SIN(zlss)
[253]	912
[3081]	913	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
	914	ztim1,ztim2,ztim3,mu0,fract, flatten)
[253]	915
[3081]	916	elseif (diurnal) then
	917	ztim1=SIN(declin)
	918	ztim2=COS(declin)COS(2.pi*(zday-.5))
	919	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
[253]	920
[3081]	921	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
	922	ztim1,ztim2,ztim3,mu0,fract, flatten)
	923	else if(diurnal .eqv. .false.) then
[253]	924
[3081]	925	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
	926	! WARNING: this function appears not to work in 1D
[253]	927
[3081]	928	if ((ngrid.eq.1).and.(global1d)) then ! Fixed zenith angle 'szangle' in 1D simulations w/ globally-averaged sunlight.
	929	mu0 = cos(pi*szangle/180.0)
	930	endif
[253]	931
[3081]	932	endif
[2470]	933
[3081]	934	if (callrad) then
	935	if( mod(icount-1,iradia).eq.0.or.lastcall) then
[1161]	936
[1477]	937	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
[1429]	938	if(rings_shadow) then
	939	call call_rings(ngrid, ptime, pday, diurnal)
	940	endif
[1133]	941
[1329]	942
[1477]	943	if (corrk) then
	944
	945	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	946	! II.a Call correlated-k radiative transfer scheme
	947	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	948	if(kastprof)then
	949	print*,'kastprof should not = true here'
	950	call abort
	951	endif
[1524]	952	if(water) then
[1308]	953	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,1:nlayer,igcm_h2o_vap))
[1524]	954	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,nlayer,igcm_h2o_vap))
	955	! take into account water effect on mean molecular weight
[2728]	956	elseif(generic_condensation) then
	957	do iq=1,nq
	958
	959	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
	960
	961	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
	962
	963	epsi_generic=constants_epsi_generic(iq)
	964
	965	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi_generic-1.e0)*pq(1:ngrid,1:nlayer,igcm_generic_vap))
	966	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi_generic-1.e0)*pq(1:ngrid,nlayer,igcm_generic_vap))
	967
	968	endif
[2890]	969	end do ! do iq=1,nq loop on tracers
[2728]	970	! take into account generic condensable specie (GCS) effect on mean molecular weight
	971
[1524]	972	else
[1308]	973	muvar(1:ngrid,1:nlayer+1)=mugaz
[1524]	974	endif
[538]	975
[1297]	976
[1477]	977	if(ok_slab_ocean) then
	978	tsurf2(:)=tsurf(:)
	979	do ig=1,ngrid
	980	if (nint(rnat(ig))==0) then
	981	tsurf(ig)=((1.-pctsrf_sic(ig))tslab(ig,1)4+pctsrf_sic(ig)tsea_ice(ig)4)0.25
	982	endif
	983	enddo
	984	endif !(ok_slab_ocean)
[1297]	985
[1477]	986	! standard callcorrk
	987	clearsky=.false.
[1482]	988	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
	989	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
	990	tsurf,fract,dist_star,aerosol,muvar, &
	991	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
	992	fluxsurfabs_sw,fluxtop_lw, &
[2537]	993	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu,GSR_nu, &
[2133]	994	int_dtaui,int_dtauv, &
[1482]	995	tau_col,cloudfrac,totcloudfrac, &
	996	clearsky,firstcall,lastcall)
[1297]	997
[2831]	998	!GG (feb2021): Option to "artificially" decrease the raditive time scale in
	999	!the deep atmosphere press > 0.1 bar. Suggested by MT.
	1000	!! COEFF_RAD to be "tuned" to facilitate convergence of tendency
	1001
	1002	!coeff_rad=0. ! 0 values, it doesn't accelerate the convergence
	1003	!coeff_rad=0.5
	1004	!coeff_rad=1.
	1005	!do l=1, nlayer
	1006	! do ig=1,ngrid
	1007	! if(pplay(ig,l).ge.1.d4) then
	1008	! zdtsw(ig,l)=zdtsw(ig,l)(pplay(ig,l)/1.d4)*coeff_rad
	1009	! zdtlw(ig,l)=zdtlw(ig,l)(pplay(ig,l)/1.d4)*coeff_rad
	1010	! endif
	1011	! enddo
	1012	!enddo
	1013
[1482]	1014	! Option to call scheme once more for clear regions
[1477]	1015	if(CLFvarying)then
[253]	1016
[1477]	1017	! ---> PROBLEMS WITH ALLOCATED ARRAYS : temporary solution in callcorrk: do not deallocate if CLFvarying ...
	1018	clearsky=.true.
[1482]	1019	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
[2537]	1020	albedo,albedo_equivalent1,emis,mu0,pplev,pplay,pt, &
[1482]	1021	tsurf,fract,dist_star,aerosol,muvar, &
	1022	zdtlw1,zdtsw1,fluxsurf_lw1,fluxsurf_sw1, &
	1023	fluxsurfabs_sw1,fluxtop_lw1, &
[2537]	1024	fluxabs_sw1,fluxtop_dn,OLR_nu1,OSR_nu1,GSR_nu1, &
[2133]	1025	int_dtaui1,int_dtauv1, &
[1482]	1026	tau_col1,cloudfrac,totcloudfrac, &
[1477]	1027	clearsky,firstcall,lastcall)
	1028	clearsky = .false. ! just in case.
[253]	1029
[1477]	1030	! Sum the fluxes and heating rates from cloudy/clear cases
	1031	do ig=1,ngrid
	1032	tf=totcloudfrac(ig)
[1482]	1033	ntf=1.-tf
	1034	fluxsurf_lw(ig) = ntffluxsurf_lw1(ig) + tffluxsurf_lw(ig)
	1035	fluxsurf_sw(ig) = ntffluxsurf_sw1(ig) + tffluxsurf_sw(ig)
	1036	albedo_equivalent(ig) = ntfalbedo_equivalent1(ig) + tfalbedo_equivalent(ig)
	1037	fluxsurfabs_sw(ig) = ntffluxsurfabs_sw1(ig) + tffluxsurfabs_sw(ig)
	1038	fluxtop_lw(ig) = ntffluxtop_lw1(ig) + tffluxtop_lw(ig)
	1039	fluxabs_sw(ig) = ntffluxabs_sw1(ig) + tffluxabs_sw(ig)
	1040	tau_col(ig) = ntftau_col1(ig) + tftau_col(ig)
[253]	1041
[1477]	1042	zdtlw(ig,1:nlayer) = ntfzdtlw1(ig,1:nlayer) + tfzdtlw(ig,1:nlayer)
	1043	zdtsw(ig,1:nlayer) = ntfzdtsw1(ig,1:nlayer) + tfzdtsw(ig,1:nlayer)
[253]	1044
[2537]	1045	OSR_nu(ig,1:L_NSPECTV) = ntfOSR_nu1(ig,1:L_NSPECTV) + tfOSR_nu(ig,1:L_NSPECTV)
	1046	GSR_nu(ig,1:L_NSPECTV) = ntfGSR_nu1(ig,1:L_NSPECTV) + tfGSR_nu(ig,1:L_NSPECTV)
[1524]	1047	OLR_nu(ig,1:L_NSPECTI) = ntfOLR_nu1(ig,1:L_NSPECTI) + tfOLR_nu(ig,1:L_NSPECTI)
[2446]	1048	if (diagdtau) then
	1049	int_dtauv(ig,:,1:L_NSPECTV) = ntfint_dtauv1(ig,:,1:L_NSPECTV) + tfint_dtauv(ig,:,1:L_NSPECTV)
	1050	int_dtaui(ig,:,1:L_NSPECTI) = ntfint_dtaui1(ig,:,1:L_NSPECTI) + tfint_dtaui(ig,:,1:L_NSPECTI)
	1051	endif
[1482]	1052	enddo
[253]	1053
[1477]	1054	endif ! end of CLFvarying.
[253]	1055
[1477]	1056	if(ok_slab_ocean) then
	1057	tsurf(:)=tsurf2(:)
	1058	endif
[1297]	1059
	1060
[1482]	1061	! Radiative flux from the sky absorbed by the surface (W.m-2).
[1477]	1062	GSR=0.0
[1482]	1063	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+fluxsurfabs_sw(1:ngrid)
[253]	1064
[1477]	1065	!if(noradsurf)then ! no lower surface; SW flux just disappears
[1542]	1066	! GSR = SUM(fluxsurf_sw(1:ngrid)*cell_area(1:ngrid))/totarea
[1477]	1067	! fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
	1068	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
	1069	!endif
[253]	1070
[1477]	1071	! Net atmospheric radiative heating rate (K.s-1)
	1072	dtrad(1:ngrid,1:nlayer)=zdtsw(1:ngrid,1:nlayer)+zdtlw(1:ngrid,1:nlayer)
[1498]	1073
	1074	! Late initialization of the Ice Spectral Albedo. We needed the visible bands to do that !
	1075	if (firstcall .and. albedo_spectral_mode) then
	1076	call spectral_albedo_calc(albedo_snow_SPECTV)
	1077	endif
[253]	1078
[1477]	1079	elseif(newtonian)then
[1482]	1080
	1081	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1082	! II.b Call Newtonian cooling scheme
	1083	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1477]	1084	call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
[253]	1085
[1477]	1086	zdtsurf(1:ngrid) = +(pt(1:ngrid,1)-tsurf(1:ngrid))/ptimestep
	1087	! e.g. surface becomes proxy for 1st atmospheric layer ?
[253]	1088
[1477]	1089	else
	1090
	1091	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1092	! II.c Atmosphere has no radiative effect
	1093	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1094	fluxtop_dn(1:ngrid) = fract(1:ngrid)mu0(1:ngrid)Fat1AU/dist_star**2
	1095	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
	1096	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
	1097	endif
	1098	fluxsurf_sw(1:ngrid) = fluxtop_dn(1:ngrid)
[1482]	1099	print*,'------------WARNING---WARNING------------' ! by MT2015.
	1100	print*,'You are in corrk=false mode, '
[1498]	1101	print*,'and the surface albedo is taken equal to the first visible spectral value'
	1102
	1103	fluxsurfabs_sw(1:ngrid) = fluxtop_dn(1:ngrid)*(1.-albedo(1:ngrid,1))
	1104	fluxrad_sky(1:ngrid) = fluxsurfabs_sw(1:ngrid)
[1477]	1105	fluxtop_lw(1:ngrid) = emis(1:ngrid)sigmatsurf(1:ngrid)**4
[253]	1106
[1477]	1107	dtrad(1:ngrid,1:nlayer)=0.0 ! no atmospheric radiative heating
[253]	1108
[1477]	1109	endif ! end of corrk
[253]	1110
[1477]	1111	endif ! of if(mod(icount-1,iradia).eq.0)
[787]	1112
[253]	1113
[1477]	1114	! Transformation of the radiative tendencies
	1115	! ------------------------------------------
	1116	zplanck(1:ngrid)=tsurf(1:ngrid)*tsurf(1:ngrid)
	1117	zplanck(1:ngrid)=emis(1:ngrid)sigmazplanck(1:ngrid)*zplanck(1:ngrid)
	1118	fluxrad(1:ngrid)=fluxrad_sky(1:ngrid)-zplanck(1:ngrid)
	1119	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+dtrad(1:ngrid,1:nlayer)
	1120
	1121	! Test of energy conservation
	1122	!----------------------------
[253]	1123	if(enertest)then
[1524]	1124	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
	1125	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
[1542]	1126	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
	1127	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
	1128	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
[1524]	1129	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
	1130	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
	1131	if (is_master) then
[1477]	1132	print*,'---------------------------------------------------------------'
	1133	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
	1134	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
	1135	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
	1136	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
	1137	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
	1138	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
[1524]	1139	endif
[1477]	1140	endif ! end of 'enertest'
[253]	1141
	1142	endif ! of if (callrad)
	1143
	1144
[1477]	1145
	1146	! --------------------------------------------
	1147	! III. Vertical diffusion (turbulent mixing) :
	1148	! --------------------------------------------
	1149
[253]	1150	if (calldifv) then
[526]	1151
[787]	1152	zflubid(1:ngrid)=fluxrad(1:ngrid)+fluxgrd(1:ngrid)
[253]	1153
[1477]	1154	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
[1524]	1155	if (UseTurbDiff) then
	1156
[1477]	1157	call turbdiff(ngrid,nlayer,nq,rnat, &
[2427]	1158	ptimestep,capcal, &
[1477]	1159	pplay,pplev,zzlay,zzlev,z0, &
	1160	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
	1161	pdt,pdq,zflubid, &
	1162	zdudif,zdvdif,zdtdif,zdtsdif, &
[1524]	1163	sensibFlux,q2,zdqdif,zdqevap,zdqsdif, &
[2427]	1164	taux,tauy)
[594]	1165
[1524]	1166	else
	1167
[1477]	1168	zdh(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
[594]	1169
[1477]	1170	call vdifc(ngrid,nlayer,nq,rnat,zpopsk, &
	1171	ptimestep,capcal,lwrite, &
	1172	pplay,pplev,zzlay,zzlev,z0, &
	1173	pu,pv,zh,pq,tsurf,emis,qsurf, &
	1174	zdh,pdq,zflubid, &
	1175	zdudif,zdvdif,zdhdif,zdtsdif, &
[2427]	1176	sensibFlux,q2,zdqdif,zdqsdif)
[253]	1177
[1477]	1178	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
[1524]	1179	zdqevap(1:ngrid,1:nlayer)=0.
[594]	1180
[1477]	1181	end if !end of 'UseTurbDiff'
[594]	1182
[2121]	1183	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+zdtsdif(1:ngrid)
	1184
[1836]	1185	!!! this is always done, except for turbulence-resolving simulations
	1186	if (.not. turb_resolved) then
	1187	pdv(1:ngrid,1:nlayer)=pdv(1:ngrid,1:nlayer)+zdvdif(1:ngrid,1:nlayer)
	1188	pdu(1:ngrid,1:nlayer)=pdu(1:ngrid,1:nlayer)+zdudif(1:ngrid,1:nlayer)
	1189	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtdif(1:ngrid,1:nlayer)
	1190	endif
[1477]	1191
[1297]	1192	if(ok_slab_ocean)then
	1193	flux_sens_lat(1:ngrid)=(zdtsdif(1:ngrid)*capcal(1:ngrid)-fluxrad(1:ngrid))
	1194	endif
	1195
	1196
[253]	1197	if (tracer) then
[1308]	1198	pdq(1:ngrid,1:nlayer,1:nq)=pdq(1:ngrid,1:nlayer,1:nq)+ zdqdif(1:ngrid,1:nlayer,1:nq)
[787]	1199	dqsurf(1:ngrid,1:nq)=dqsurf(1:ngrid,1:nq) + zdqsdif(1:ngrid,1:nq)
[253]	1200	end if ! of if (tracer)
	1201
[1477]	1202
	1203	! test energy conservation
[253]	1204	!-------------------------
	1205	if(enertest)then
[1477]	1206
[1524]	1207	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
[253]	1208	do ig = 1, ngrid
[1524]	1209	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
	1210	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
[253]	1211	enddo
[1477]	1212
[1542]	1213	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
[1524]	1214	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
[1542]	1215	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
	1216	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
[1477]	1217
[1524]	1218	if (is_master) then
[1477]	1219
	1220	if (UseTurbDiff) then
[1524]	1221	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
	1222	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
[1477]	1223	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
[1524]	1224	else
	1225	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
	1226	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
	1227	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
	1228	end if
	1229	endif ! end of 'is_master'
[1477]	1230
	1231	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
	1232	endif ! end of 'enertest'
[253]	1233
[1477]	1234
	1235	! Test water conservation.
[253]	1236	if(watertest.and.water)then
[1477]	1237
[1524]	1238	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
[1542]	1239	call planetwide_sumval(zdqsdif(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots_tmp)
[253]	1240	do ig = 1, ngrid
[1524]	1241	vdifcncons(ig)=SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_vap))
	1242	enddo
	1243	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
[1542]	1244	call planetwide_sumval(zdqsdif(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1245	dWtot = dWtot + dWtot_tmp
	1246	dWtots = dWtots + dWtots_tmp
[651]	1247	do ig = 1, ngrid
[1524]	1248	vdifcncons(ig)=vdifcncons(ig) + SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_ice))
	1249	enddo
	1250	call planetwide_maxval(vdifcncons(:),nconsMAX)
[253]	1251
[1524]	1252	if (is_master) then
[1477]	1253	print*,'---------------------------------------------------------------'
	1254	print*,'In difv atmospheric water change =',dWtot,' kg m-2'
	1255	print*,'In difv surface water change =',dWtots,' kg m-2'
	1256	print*,'In difv non-cons factor =',dWtot+dWtots,' kg m-2'
	1257	print*,'In difv MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
[1524]	1258	endif
[253]	1259
[1477]	1260	endif ! end of 'watertest'
[253]	1261	!-------------------------
	1262
[1477]	1263	else ! calldifv
[253]	1264
	1265	if(.not.newtonian)then
	1266
[787]	1267	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + (fluxrad(1:ngrid) + fluxgrd(1:ngrid))/capcal(1:ngrid)
[253]	1268
	1269	endif
	1270
[1477]	1271	endif ! end of 'calldifv'
[253]	1272
	1273
[2060]	1274	!-------------------
	1275	! IV. Convection :
	1276	!-------------------
	1277
	1278	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
	1279	! IV.a Thermal plume model :
	1280	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
	1281
	1282	IF (calltherm) THEN
[2127]	1283
	1284	! AB: We need to evaporate ice before calling thermcell_main.
[2105]	1285	IF (water) THEN
	1286	CALL evap(ngrid,nlayer,nq,ptimestep,pt,pq,pdq,pdt,dqevap,dtevap,zqtherm,zttherm)
	1287	ELSE
[2114]	1288	zttherm(:,:) = pt(:,:) + pdt(:,:) * ptimestep
	1289	zqtherm(:,:,:) = pq(:,:,:) + pdq(:,:,:) * ptimestep
[2105]	1290	ENDIF
	1291
[2127]	1292	CALL thermcell_main(ngrid, nlayer, nq, ptimestep, firstcall, &
	1293	pplay, pplev, pphi, zpopsk, &
	1294	pu, pv, zttherm, zqtherm, &
	1295	zdutherm, zdvtherm, zdttherm, zdqtherm, &
[2232]	1296	fm, entr, detr, zw2, fraca)
[2060]	1297
	1298	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdutherm(1:ngrid,1:nlayer)
	1299	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvtherm(1:ngrid,1:nlayer)
	1300	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdttherm(1:ngrid,1:nlayer)
	1301
[2127]	1302	IF (tracer) THEN
	1303	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqtherm(1:ngrid,1:nlayer,1:nq)
[2060]	1304	ENDIF
	1305
	1306	ENDIF ! end of 'calltherm'
	1307
	1308	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1309	! IV.b Dry convective adjustment :
	1310	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	1311
	1312	if(calladj) then
	1313
[1308]	1314	zdh(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
	1315	zduadj(1:ngrid,1:nlayer)=0.0
	1316	zdvadj(1:ngrid,1:nlayer)=0.0
	1317	zdhadj(1:ngrid,1:nlayer)=0.0
[253]	1318
	1319
[1477]	1320	call convadj(ngrid,nlayer,nq,ptimestep, &
	1321	pplay,pplev,zpopsk, &
	1322	pu,pv,zh,pq, &
	1323	pdu,pdv,zdh,pdq, &
	1324	zduadj,zdvadj,zdhadj, &
[2232]	1325	zdqadj)
[253]	1326
[1308]	1327	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zduadj(1:ngrid,1:nlayer)
	1328	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvadj(1:ngrid,1:nlayer)
	1329	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
	1330	zdtadj(1:ngrid,1:nlayer) = zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
[1283]	1331
[253]	1332	if(tracer) then
[1308]	1333	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqadj(1:ngrid,1:nlayer,1:nq)
[253]	1334	end if
	1335
[1477]	1336	! Test energy conservation
[253]	1337	if(enertest)then
[1524]	1338	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
[1295]	1339	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
[253]	1340	endif
	1341
[1477]	1342	! Test water conservation
[253]	1343	if(watertest)then
[1524]	1344	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
[253]	1345	do ig = 1, ngrid
[1524]	1346	cadjncons(ig)=SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_vap))
	1347	enddo
	1348	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
	1349	dWtot = dWtot + dWtot_tmp
[651]	1350	do ig = 1, ngrid
[1524]	1351	cadjncons(ig)=cadjncons(ig) + SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_ice))
	1352	enddo
	1353	call planetwide_maxval(cadjncons(:),nconsMAX)
[253]	1354
[1295]	1355	if (is_master) then
[1524]	1356	print*,'In convadj atmospheric water change =',dWtot,' kg m-2'
[1477]	1357	print*,'In convadj MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
[1524]	1358	endif
[1477]	1359
	1360	endif ! end of 'watertest'
[787]	1361
[1477]	1362	endif ! end of 'calladj'
[2299]	1363	!----------------------------------------------
	1364	! Non orographic Gravity Waves:
	1365	!---------------------------------------------
	1366	IF (calllott_nonoro) THEN
	1367
[2595]	1368	CALL nonoro_gwd_ran(ngrid,nlayer,ptimestep, &
	1369	cpnew, rnew, &
	1370	pplay, &
[2299]	1371	zmax_th, &! max altitude reached by thermals (m)
	1372	pt, pu, pv, &
	1373	pdt, pdu, pdv, &
	1374	zustrhi,zvstrhi, &
	1375	d_t_hin, d_u_hin, d_v_hin)
	1376
	1377	! Update tendencies
	1378	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) &
	1379	+ d_t_hin(1:ngrid,1:nlayer)
	1380	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) &
	1381	+ d_u_hin(1:ngrid,1:nlayer)
	1382	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) &
	1383	+ d_v_hin(1:ngrid,1:nlayer)
	1384	print*,'du_nonoro: max ', maxval(d_u_hin), 'min ', minval(d_u_hin)
	1385	print*,'dv_nonoro: max ', maxval(d_v_hin), 'min ', minval(d_v_hin)
	1386
	1387	ENDIF ! of IF (calllott_nonoro)
	1388
	1389
[2060]	1390
[1477]	1391	!-----------------------------------------------
	1392	! V. Carbon dioxide condensation-sublimation :
	1393	!-----------------------------------------------
[253]	1394
	1395	if (co2cond) then
[1477]	1396
[253]	1397	if (.not.tracer) then
	1398	print*,'We need a CO2 ice tracer to condense CO2'
	1399	call abort
	1400	endif
[1477]	1401	call condense_co2(ngrid,nlayer,nq,ptimestep, &
	1402	capcal,pplay,pplev,tsurf,pt, &
[1485]	1403	pdt,zdtsurf,pq,pdq, &
	1404	qsurf,zdqsurfc,albedo,emis, &
[1482]	1405	albedo_bareground,albedo_co2_ice_SPECTV, &
[1485]	1406	zdtc,zdtsurfc,pdpsrf,zdqc)
[253]	1407
[1484]	1408	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtc(1:ngrid,1:nlayer)
	1409	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfc(1:ngrid)
[728]	1410
[1484]	1411	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+ zdqc(1:ngrid,1:nlayer,1:nq)
	1412	dqsurf(1:ngrid,igcm_co2_ice) = dqsurf(1:ngrid,igcm_co2_ice) + zdqsurfc(1:ngrid)
[253]	1413
	1414	! test energy conservation
	1415	if(enertest)then
[1524]	1416	call planetwide_sumval(cppmassarea(:,:)zdtc(:,:)/totarea_planet,dEtot)
[1542]	1417	call planetwide_sumval(capcal(:)zdtsurfc(:)cell_area(:)/totarea_planet,dEtots)
[1524]	1418	if (is_master) then
	1419	print*,'In co2cloud atmospheric energy change =',dEtot,' W m-2'
[1477]	1420	print*,'In co2cloud surface energy change =',dEtots,' W m-2'
[1524]	1421	endif
[253]	1422	endif
	1423
[1477]	1424	endif ! end of 'co2cond'
[253]	1425
	1426
[1477]	1427	!---------------------------------------------
	1428	! VI. Specific parameterizations for tracers
	1429	!---------------------------------------------
[253]	1430
[1477]	1431	if (tracer) then
	1432
	1433	! ---------------------
	1434	! VI.1. Water and ice
	1435	! ---------------------
[253]	1436	if (water) then
[2105]	1437
[1477]	1438	! Water ice condensation in the atmosphere
[728]	1439	if(watercond.and.(RLVTT.gt.1.e-8))then
[1477]	1440
[2871]	1441	if ((.not.calltherm).and.moistadjustment) then
[2105]	1442	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
	1443	dtmoist(1:ngrid,1:nlayer)=0.
[1477]	1444
[2105]	1445	! Moist Convective Adjustment.
	1446	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1447	call moistadj(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
[1524]	1448
[2105]	1449	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
	1450	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap)
	1451	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
	1452	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_ice)
	1453	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
	1454
	1455	! Test energy conservation.
	1456	if(enertest)then
	1457	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
	1458	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
	1459	call planetwide_minval(dtmoist(:,:),dtmoist_min)
	1460	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
	1461
	1462	do ig=1,ngrid
	1463	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
	1464	enddo
	1465
	1466	if (is_master) then
	1467	print*,'In moistadj atmospheric energy change =',dEtot,' W m-2'
	1468	print,'In moistadj MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
	1469	print,'In moistadj MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
	1470	endif
	1471
	1472	call planetwide_sumval(massarea(:,:)dqmoist(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
	1473	massarea(:,:)dqmoist(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
	1474	if (is_master) print*,'In moistadj atmospheric water change =',dWtot,' kg m-2'
	1475
	1476	endif ! end of 'enertest'
[2875]	1477	else
	1478	! rneb_man, dqmoist are output of moistadj, but used later on
	1479	! so set them to zero if moistadj is not called
	1480	rneb_man(:,:)=0
	1481	dqmoist(:,:,:)=0
	1482	endif ! end of '(.not.calltherm).and.moistadjustment'
[2105]	1483
[1477]	1484	! Large scale condensation/evaporation.
	1485	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1308]	1486	call largescale(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pq,pdt,pdq,dtlscale,dqvaplscale,dqcldlscale,rneb_lsc)
[253]	1487
[1308]	1488	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtlscale(1:ngrid,1:nlayer)
	1489	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap)+dqvaplscale(1:ngrid,1:nlayer)
	1490	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice)+dqcldlscale(1:ngrid,1:nlayer)
[253]	1491
[1477]	1492	! Test energy conservation.
[253]	1493	if(enertest)then
[1016]	1494	lscaledEz(:,:) = cppmass(:,:)dtlscale(:,:)
[787]	1495	do ig=1,ngrid
[728]	1496	lscaledE(ig) = cppSUM(mass(:,:)dtlscale(:,:))
[253]	1497	enddo
[1524]	1498	call planetwide_sumval(cppmassarea(:,:)dtlscale(:,:)/totarea_planet,dEtot)
[1477]	1499
[1524]	1500	if (is_master) print*,'In largescale atmospheric energy change =',dEtot,' W m-2'
[728]	1501
[1477]	1502	! Test water conservation.
[1524]	1503	call planetwide_sumval(massarea(:,:)dqvaplscale(:,:)ptimestep/totarea_planet+ &
	1504	SUM(massarea(:,:)dqcldlscale(:,:))ptimestep/totarea_planet,dWtot)
[1477]	1505
[1524]	1506	if (is_master) print*,'In largescale atmospheric water change =',dWtot,' kg m-2'
[1477]	1507	endif ! end of 'enertest'
[253]	1508
[1477]	1509	! Compute cloud fraction.
[253]	1510	do l = 1, nlayer
[787]	1511	do ig=1,ngrid
[253]	1512	cloudfrac(ig,l)=MAX(rneb_lsc(ig,l),rneb_man(ig,l))
	1513	enddo
	1514	enddo
	1515
[1477]	1516	endif ! end of 'watercond'
[253]	1517
[1477]	1518	! Water ice / liquid precipitation.
	1519	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1989]	1520	zdqrain(1:ngrid,1:nlayer,1:nq) = 0.0 !JL18 need to do that everytimestep if mass redis is on.
	1521
[728]	1522	if(waterrain)then
[253]	1523
[787]	1524	zdqsrain(1:ngrid) = 0.0
	1525	zdqssnow(1:ngrid) = 0.0
[253]	1526
[2871]	1527	call rain(ngrid,nlayer,nq,ptimestep,pplev,pplay,pphi,pt,pdt,pq,pdq, &
[1859]	1528	zdtrain,zdqrain,zdqsrain,zdqssnow,reevap_precip,cloudfrac)
[253]	1529
[1308]	1530	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
[1524]	1531	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
[1308]	1532	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
[1524]	1533	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
[1308]	1534	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain(1:ngrid,1:nlayer)
[1477]	1535
	1536	dqsurf(1:ngrid,igcm_h2o_vap) = dqsurf(1:ngrid,igcm_h2o_vap)+zdqsrain(1:ngrid)
	1537	dqsurf(1:ngrid,igcm_h2o_ice) = dqsurf(1:ngrid,igcm_h2o_ice)+zdqssnow(1:ngrid)
[253]	1538
[1477]	1539	! Test energy conservation.
[651]	1540	if(enertest)then
[1477]	1541
[1524]	1542	call planetwide_sumval(cppmassarea(:,:)zdtrain(:,:)/totarea_planet,dEtot)
	1543	if (is_master) print*,'In rain atmospheric T energy change =',dEtot,' W m-2'
	1544	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
[1542]	1545	call planetwide_sumval(cell_area(:)zdqssnow(:)/totarea_planetRLVTT/cpp,dItot)
[1524]	1546	dItot = dItot + dItot_tmp
	1547	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dVtot_tmp)
[1542]	1548	call planetwide_sumval(cell_area(:)zdqsrain(:)/totarea_planetRLVTT/cpp,dVtot)
[1524]	1549	dVtot = dVtot + dVtot_tmp
	1550	dEtot = dItot + dVtot
[1477]	1551
[1524]	1552	if (is_master) then
[1477]	1553	print*,'In rain dItot =',dItot,' W m-2'
	1554	print*,'In rain dVtot =',dVtot,' W m-2'
	1555	print*,'In rain atmospheric L energy change =',dEtot,' W m-2'
[1524]	1556	endif
[253]	1557
[1477]	1558	! Test water conservation
[1524]	1559	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
	1560	massarea(:,:)zdqrain(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
[1542]	1561	call planetwide_sumval((zdqsrain(:)+zdqssnow(:))cell_area(:)ptimestep/totarea_planet,dWtots)
[1477]	1562
[1524]	1563	if (is_master) then
	1564	print*,'In rain atmospheric water change =',dWtot,' kg m-2'
	1565	print*,'In rain surface water change =',dWtots,' kg m-2'
	1566	print*,'In rain non-cons factor =',dWtot+dWtots,' kg m-2'
	1567	endif
[1477]	1568
	1569	endif ! end of 'enertest'
[253]	1570
[1477]	1571	end if ! enf of 'waterrain'
	1572
	1573	end if ! end of 'water'
[253]	1574
[1801]	1575	! -------------------------
	1576	! VI.2. Photochemistry
[1477]	1577	! -------------------------
[1801]	1578
[2058]	1579	#ifndef MESOSCALE
[1801]	1580	IF (photochem) then
	1581
	1582	DO ig=1,ngrid
	1583	array_zero1(ig)=0.0
	1584	DO l=1,nlayer
	1585	array_zero2(ig,l)=0.
	1586	ENDDO
	1587	ENDDO
	1588
	1589	call calchim_asis(ngrid,nlayer,nq, &
	1590	ptimestep,pplay,pplev,pt,pdt,dist_star,mu0, &
	1591	fract,zzlev,zzlay,zday,pq,pdq,zdqchim,zdqschim, &
	1592	array_zero1,array_zero1, &
[2542]	1593	pu,pdu,pv,pdv,array_zero2,array_zero2,icount,zdtchim)
[1801]	1594
	1595	! increment values of tracers:
[2542]	1596	iesp = 0
	1597	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
	1598	! tracers is zero anyways
	1599	! September 2020: flag is_chim to increment only on chemical species
	1600	IF (is_chim(iq)==1) THEN
	1601	iesp = iesp + 1
	1602	DO l=1,nlayer
	1603	DO ig=1,ngrid
	1604	pdq(ig,l,iq)=pdq(ig,l,iq)+zdqchim(ig,l,iesp)
	1605	ENDDO
[1801]	1606	ENDDO
[2542]	1607	ENDIF
[1801]	1608	ENDDO ! of DO iq=1,nq
	1609
	1610
	1611	! increment surface values of tracers:
	1612	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
	1613	! tracers is zero anyways
	1614	DO ig=1,ngrid
	1615	! dqsurf(ig,iq)=dqsurf(ig,iq)+zdqschim(ig,iq)
	1616	ENDDO
	1617	ENDDO ! of DO iq=1,nq
	1618
[2542]	1619	! increment values of temperature:
	1620	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtchim(1:ngrid,1:nlayer)
	1621
[1801]	1622	END IF ! of IF (photochem)
[2058]	1623	#endif
[1801]	1624
	1625
[1477]	1626	! -------------------------
[1801]	1627	! VI.3. Aerosol particles
	1628	! -------------------------
[2701]	1629
[2700]	1630	!Generic Condensation
	1631	if (generic_condensation) then
[2701]	1632	call condensation_generic(ngrid,nlayer,nq,ptimestep,pplev,pplay, &
[2890]	1633	pt,pq,pdt,pdq,dt_generic_condensation, &
[2724]	1634	dqvaplscale_generic,dqcldlscale_generic,rneb_generic)
[2890]	1635	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dt_generic_condensation(1:ngrid,1:nlayer)
[2700]	1636	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+dqvaplscale_generic(1:ngrid,1:nlayer,1:nq)
	1637	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+dqcldlscale_generic(1:ngrid,1:nlayer,1:nq)
[2714]	1638
	1639	if(enertest)then
	1640	do ig=1,ngrid
[2890]	1641	genericconddE(ig) = cppSUM(mass(:,:)dt_generic_condensation(:,:))
[2714]	1642	enddo
	1643
[2890]	1644	call planetwide_sumval(cppmassarea(:,:)dt_generic_condensation(:,:)/totarea_planet,dEtot)
[2714]	1645
	1646	if (is_master) print*,'In generic condensation atmospheric energy change =',dEtot,' W m-2'
	1647	end if
[2724]	1648
[2726]	1649	if (.not. water) then
	1650	! Compute GCS (Generic Condensable Specie) cloud fraction. For now we can not have both water cloud fraction and GCS cloud fraction
	1651	! Water is the priority
	1652	! If you have set water and generic_condensation, then cloudfrac will be water cloudfrac
	1653	!
	1654	! If you have set generic_condensation (and not water) and you have set several GCS
	1655	! then cloudfrac will be only the cloudfrac of the last generic tracer
	1656	! (Because it is rewritten every tracer in the loop)
	1657	!
	1658	! Maybe one should create a cloudfrac_generic(ngrid,nlayer,nq) with 3 dimensions, the last one for tracers
[2724]	1659
	1660	! Let's loop on tracers
[2802]	1661	cloudfrac(:,:)=0.0
[2724]	1662	do iq=1,nq
	1663	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
	1664	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
	1665	do l = 1, nlayer
	1666	do ig=1,ngrid
[2802]	1667	cloudfrac(ig,l)=rneb_generic(ig,l,iq)
[2724]	1668	enddo
	1669	enddo
	1670	endif
	1671	end do ! do iq=1,nq loop on tracers
	1672	endif ! .not. water
	1673
[2700]	1674	endif !generic_condensation
[253]	1675
[2721]	1676	!Generic Rain
	1677
	1678	if (generic_rain) then
	1679
	1680	zdqsrain_generic(1:ngrid,1:nq) = 0.0
	1681	zdqssnow_generic(1:ngrid,1:nq) = 0.0
	1682
[2891]	1683	call rain_generic(ngrid,nlayer,nq,ptimestep,pplev,pplay,pphi,pt,pdt,pq,pdq, &
[2721]	1684	zdtrain_generic,dq_rain_generic_vap,dq_rain_generic_cld, &
	1685	zdqsrain_generic,zdqssnow_generic,reevap_precip_generic,cloudfrac)
	1686
	1687	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
	1688	+ dq_rain_generic_vap(1:ngrid,1:nlayer,1:nq)
	1689	! only the parts with indexes of generic vapor tracers are filled in dq_rain_generic_vap, other parts are 0.
	1690	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
	1691	+ dq_rain_generic_cld(1:ngrid,1:nlayer,1:nq)
	1692	! only the parts with indexes of generic ice(cloud) tracers are filled in dq_rain_generic_cld, other parts are 0.
	1693
	1694	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain_generic(1:ngrid,1:nlayer)
	1695
	1696	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq)+zdqsrain_generic(1:ngrid,1:nq)
	1697
	1698	! Test energy conservation.
	1699	if(enertest)then
	1700
	1701	call planetwide_sumval(cppmassarea(:,:)zdtrain_generic(:,:)/totarea_planet,dEtot)
	1702	if (is_master) print*,'In rain_generic atmospheric T energy change =',dEtot,' W m-2'
	1703
	1704	! Test conservationfor each generic condensable specie (GCS) tracer
	1705
	1706	! Let's loop on tracers
	1707
	1708	do iq=1,nq
	1709
[2722]	1710	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
[2721]	1711
[2722]	1712	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
[2721]	1713
	1714	call planetwide_sumval(massarea(:,:)dq_rain_generic_cld(:,:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
	1715	call planetwide_sumval(cell_area(:)zdqssnow_generic(:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dItot)
	1716	dItot = dItot + dItot_tmp
	1717	call planetwide_sumval(massarea(:,:)dq_rain_generic_vap(:,:,igcm_generic_vap)ptimestep/totarea_planet,dVtot_tmp)
	1718	call planetwide_sumval(cell_area(:)zdqsrain_generic(:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dVtot)
	1719	dVtot = dVtot + dVtot_tmp
	1720	dEtot = dItot + dVtot
	1721
	1722	if (is_master) then
	1723	print*,'In rain_generic dItot =',dItot,' W m-2'
	1724	print*,'In rain_generic dVtot =',dVtot,' W m-2'
	1725	print*,'In rain_generic atmospheric L energy change =',dEtot,' W m-2'
	1726	endif
	1727
	1728	call planetwide_sumval(massarea(:,:)dq_rain_generic_vap(:,:,igcm_generic_vap)ptimestep/totarea_planet+ &
	1729	massarea(:,:)dq_rain_generic_cld(:,:,igcm_generic_ice)ptimestep/totarea_planet,dWtot)
	1730	call planetwide_sumval((zdqsrain_generic(:,igcm_generic_ice)+zdqssnow_generic(:,igcm_generic_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
	1731
	1732	if (is_master) then
	1733	print*,'In rain_generic atmospheric generic tracer change =',dWtot,' kg m-2'
	1734	print*,'In rain_generic surface generic tracer change =',dWtots,' kg m-2'
	1735	print*,'In rain_generic non-cons factor =',dWtot+dWtots,' kg m-2'
	1736	endif
	1737
	1738	endif
	1739
	1740	end do ! do iq=1,nq loop on tracers
	1741
	1742	endif ! end of 'enertest'
	1743
	1744	endif !generic_rain
	1745
[1477]	1746	! Sedimentation.
	1747	if (sedimentation) then
[2802]	1748
[1477]	1749	zdqsed(1:ngrid,1:nlayer,1:nq) = 0.0
	1750	zdqssed(1:ngrid,1:nq) = 0.0
[253]	1751
[1477]	1752	if(watertest)then
	1753
	1754	iq=igcm_h2o_ice
[1524]	1755	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
	1756	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
	1757	if (is_master) then
	1758	print*,'Before sedim pq =',dWtot,' kg m-2'
[1477]	1759	print*,'Before sedim pdq =',dWtots,' kg m-2'
[1524]	1760	endif
[1477]	1761	endif
	1762
	1763	call callsedim(ngrid,nlayer,ptimestep, &
	1764	pplev,zzlev,pt,pdt,pq,pdq, &
	1765	zdqsed,zdqssed,nq)
[253]	1766
[1477]	1767	if(watertest)then
	1768	iq=igcm_h2o_ice
[1524]	1769	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
	1770	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
	1771	if (is_master) then
	1772	print*,'After sedim pq =',dWtot,' kg m-2'
	1773	print*,'After sedim pdq =',dWtots,' kg m-2'
	1774	endif
[1477]	1775	endif
[253]	1776
[1477]	1777	! Whether it falls as rain or snow depends only on the surface temperature
	1778	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqsed(1:ngrid,1:nlayer,1:nq)
	1779	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqssed(1:ngrid,1:nq)
[253]	1780
[1477]	1781	! Test water conservation
	1782	if(watertest)then
[1524]	1783	call planetwide_sumval(massarea(:,:)(zdqsed(:,:,igcm_h2o_vap)+zdqsed(:,:,igcm_h2o_ice))ptimestep/totarea_planet,dWtot)
[1542]	1784	call planetwide_sumval((zdqssed(:,igcm_h2o_vap)+zdqssed(:,igcm_h2o_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1785	if (is_master) then
	1786	print*,'In sedim atmospheric ice change =',dWtot,' kg m-2'
	1787	print*,'In sedim surface ice change =',dWtots,' kg m-2'
	1788	print*,'In sedim non-cons factor =',dWtot+dWtots,' kg m-2'
	1789	endif
[1477]	1790	endif
[253]	1791
[1477]	1792	end if ! end of 'sedimentation'
[253]	1793
	1794
[1477]	1795	! ---------------
[1801]	1796	! VI.4. Updates
[1477]	1797	! ---------------
[253]	1798
[1477]	1799	! Updating Atmospheric Mass and Tracers budgets.
[728]	1800	if(mass_redistrib) then
	1801
[1477]	1802	zdmassmr(1:ngrid,1:nlayer) = mass(1:ngrid,1:nlayer) * &
[1524]	1803	( zdqevap(1:ngrid,1:nlayer) &
	1804	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap) &
	1805	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap) &
	1806	+ dqvaplscale(1:ngrid,1:nlayer) )
[863]	1807
	1808	do ig = 1, ngrid
[1524]	1809	zdmassmr_col(ig)=SUM(zdmassmr(ig,1:nlayer))
[863]	1810	enddo
[728]	1811
[1524]	1812	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
	1813	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
	1814	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
[728]	1815
[1524]	1816	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
[1477]	1817	rnat,capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
[1524]	1818	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
	1819	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
	1820
[1308]	1821	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqmr(1:ngrid,1:nlayer,1:nq)
[1477]	1822	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqsurfmr(1:ngrid,1:nq)
	1823	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdtmr(1:ngrid,1:nlayer)
	1824	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdumr(1:ngrid,1:nlayer)
	1825	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvmr(1:ngrid,1:nlayer)
[1524]	1826	pdpsrf(1:ngrid) = pdpsrf(1:ngrid) + zdpsrfmr(1:ngrid)
[1477]	1827	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfmr(1:ngrid)
[1524]	1828
	1829	endif
[728]	1830
[1477]	1831	! ------------------
[1801]	1832	! VI.5. Slab Ocean
[1477]	1833	! ------------------
[728]	1834
[1477]	1835	if (ok_slab_ocean)then
[728]	1836
[1477]	1837	do ig=1,ngrid
	1838	qsurfint(:,igcm_h2o_ice)=qsurf(:,igcm_h2o_ice)
	1839	enddo
[1297]	1840
[1477]	1841	call ocean_slab_ice(ptimestep, &
	1842	ngrid, knindex, tsea_ice, fluxrad, &
	1843	zdqssnow, qsurf(:,igcm_h2o_ice), &
	1844	- zdqsdif(:,igcm_h2o_vap), &
	1845	flux_sens_lat,tsea_ice, pctsrf_sic, &
	1846	taux,tauy,icount)
[1297]	1847
	1848
[1477]	1849	call ocean_slab_get_vars(ngrid,tslab, &
	1850	sea_ice, flux_o, &
	1851	flux_g, dt_hdiff, &
	1852	dt_ekman)
	1853
[1297]	1854	do ig=1,ngrid
	1855	if (nint(rnat(ig)).eq.1)then
[1477]	1856	tslab(ig,1) = 0.
	1857	tslab(ig,2) = 0.
	1858	tsea_ice(ig) = 0.
	1859	sea_ice(ig) = 0.
	1860	pctsrf_sic(ig) = 0.
	1861	qsurf(ig,igcm_h2o_ice) = qsurfint(ig,igcm_h2o_ice)
[1297]	1862	endif
	1863	enddo
	1864
[1477]	1865	endif ! end of 'ok_slab_ocean'
[1297]	1866
[1477]	1867	! -----------------------------
[1801]	1868	! VI.6. Surface Tracer Update
[1477]	1869	! -----------------------------
[1297]	1870
[253]	1871	if(hydrology)then
[1297]	1872
[1482]	1873	call hydrol(ngrid,nq,ptimestep,rnat,tsurf,qsurf,dqsurf,dqs_hyd, &
	1874	capcal,albedo,albedo_bareground, &
[1524]	1875	albedo_snow_SPECTV,albedo_co2_ice_SPECTV, &
[1482]	1876	mu0,zdtsurf,zdtsurf_hyd,hice,pctsrf_sic, &
[1477]	1877	sea_ice)
[253]	1878
[1484]	1879	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurf_hyd(1:ngrid)
	1880	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + dqs_hyd(1:ngrid,1:nq)
	1881
	1882	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
[253]	1883
[1477]	1884	! Test energy conservation
[253]	1885	if(enertest)then
[1542]	1886	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf_hyd(:)/totarea_planet,dEtots)
[1524]	1887	if (is_master) print*,'In hydrol surface energy change =',dEtots,' W m-2'
[253]	1888	endif
	1889
	1890	! test water conservation
	1891	if(watertest)then
[1542]	1892	call planetwide_sumval(dqs_hyd(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1893	if (is_master) print*,'In hydrol surface ice change =',dWtots,' kg m-2'
[1542]	1894	call planetwide_sumval(dqs_hyd(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1895	if (is_master) then
[1477]	1896	print*,'In hydrol surface water change =',dWtots,' kg m-2'
	1897	print*,'---------------------------------------------------------------'
[1524]	1898	endif
[253]	1899	endif
	1900
[1477]	1901	else ! of if (hydrology)
[253]	1902
[1484]	1903	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
[253]	1904
[1477]	1905	end if ! of if (hydrology)
[253]	1906
[1477]	1907	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
	1908	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
[622]	1909	qsurf_hist(:,:) = qsurf(:,:)
[253]	1910
	1911	if(ice_update)then
[787]	1912	ice_min(1:ngrid)=min(ice_min(1:ngrid),qsurf(1:ngrid,igcm_h2o_ice))
[253]	1913	endif
	1914
[1477]	1915	endif! end of if 'tracer'
[253]	1916
	1917
[1477]	1918	!------------------------------------------------
	1919	! VII. Surface and sub-surface soil temperature
	1920	!------------------------------------------------
[253]	1921
[1477]	1922
	1923	! Increment surface temperature
[1297]	1924	if(ok_slab_ocean)then
	1925	do ig=1,ngrid
	1926	if (nint(rnat(ig)).eq.0)then
	1927	zdtsurf(ig)= (tslab(ig,1) &
	1928	+ pctsrf_sic(ig)*(tsea_ice(ig)-tslab(ig,1))-tsurf(ig))/ptimestep
	1929	endif
	1930	tsurf(ig)=tsurf(ig)+ptimestep*zdtsurf(ig)
	1931	enddo
	1932
	1933	else
	1934	tsurf(1:ngrid)=tsurf(1:ngrid)+ptimestep*zdtsurf(1:ngrid)
[1477]	1935	endif ! end of 'ok_slab_ocean'
[1297]	1936
[1477]	1937
	1938	! Compute soil temperatures and subsurface heat flux.
[253]	1939	if (callsoil) then
[787]	1940	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
[1477]	1941	ptimestep,tsurf,tsoil,capcal,fluxgrd)
[253]	1942	endif
	1943
[1297]	1944
	1945	if (ok_slab_ocean) then
[1477]	1946
	1947	do ig=1,ngrid
	1948
	1949	fluxgrdocean(ig)=fluxgrd(ig)
	1950	if (nint(rnat(ig)).eq.0) then
[1297]	1951	capcal(ig)=capcalocean
	1952	fluxgrd(ig)=0.
	1953	fluxgrdocean(ig)=pctsrf_sic(ig)flux_g(ig)+(1-pctsrf_sic(ig))(dt_hdiff(ig,1)+dt_ekman(ig,1))
[1477]	1954	do iq=1,nsoilmx
	1955	tsoil(ig,iq)=tsurf(ig)
	1956	enddo
	1957	if (pctsrf_sic(ig).gt.0.5) then
	1958	capcal(ig)=capcalseaice
	1959	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
	1960	capcal(ig)=capcalsno
	1961	endif
	1962	endif
	1963	endif
	1964
	1965	enddo
	1966
	1967	endif !end of 'ok_slab_ocean'
[1297]	1968
[1477]	1969
	1970	! Test energy conservation
[253]	1971	if(enertest)then
[1542]	1972	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
[1524]	1973	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
[253]	1974	endif
	1975
	1976
[1477]	1977	!---------------------------------------------------
	1978	! VIII. Perform diagnostics and write output files
	1979	!---------------------------------------------------
	1980
	1981	! Note : For output only: the actual model integration is performed in the dynamics.
	1982
	1983
[253]	1984
[1477]	1985	! Temperature, zonal and meridional winds.
[1308]	1986	zt(1:ngrid,1:nlayer) = pt(1:ngrid,1:nlayer) + pdt(1:ngrid,1:nlayer)*ptimestep
	1987	zu(1:ngrid,1:nlayer) = pu(1:ngrid,1:nlayer) + pdu(1:ngrid,1:nlayer)*ptimestep
	1988	zv(1:ngrid,1:nlayer) = pv(1:ngrid,1:nlayer) + pdv(1:ngrid,1:nlayer)*ptimestep
[2176]	1989
	1990	! Recast thermal plume vertical velocity array for outputs
	1991	IF (calltherm) THEN
	1992	DO ig=1,ngrid
	1993	DO l=1,nlayer
	1994	zw2_bis(ig,l) = zw2(ig,l)
[2232]	1995	fm_bis(ig,l) = fm(ig,l)
[2176]	1996	ENDDO
	1997	ENDDO
	1998	ENDIF
[253]	1999
[1477]	2000	! Diagnostic.
[1637]	2001	zdtdyn(1:ngrid,1:nlayer) = (pt(1:ngrid,1:nlayer)-ztprevious(1:ngrid,1:nlayer)) / ptimestep
[1308]	2002	ztprevious(1:ngrid,1:nlayer) = zt(1:ngrid,1:nlayer)
[253]	2003
[1637]	2004	zdudyn(1:ngrid,1:nlayer) = (pu(1:ngrid,1:nlayer)-zuprevious(1:ngrid,1:nlayer)) / ptimestep
	2005	zuprevious(1:ngrid,1:nlayer) = zu(1:ngrid,1:nlayer)
	2006
[253]	2007	if(firstcall)then
[1308]	2008	zdtdyn(1:ngrid,1:nlayer)=0.0
[1637]	2009	zdudyn(1:ngrid,1:nlayer)=0.0
[253]	2010	endif
	2011
[1477]	2012	! Dynamical heating diagnostic.
[253]	2013	do ig=1,ngrid
[1637]	2014	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
[253]	2015	enddo
	2016
[1477]	2017	! Tracers.
[1308]	2018	zq(1:ngrid,1:nlayer,1:nq) = pq(1:ngrid,1:nlayer,1:nq) + pdq(1:ngrid,1:nlayer,1:nq)*ptimestep
[253]	2019
[1477]	2020	! Surface pressure.
[787]	2021	ps(1:ngrid) = pplev(1:ngrid,1) + pdpsrf(1:ngrid)*ptimestep
[253]	2022
	2023
	2024
[1477]	2025	! Surface and soil temperature information
[1542]	2026	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
[1295]	2027	call planetwide_minval(tsurf(:),Ts2)
	2028	call planetwide_maxval(tsurf(:),Ts3)
[253]	2029	if(callsoil)then
[1542]	2030	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
[1699]	2031	if (is_master) then
	2032	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
	2033	print*,Ts1,Ts2,Ts3,TsS
	2034	end if
[959]	2035	else
[1699]	2036	if (is_master) then
	2037	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
[1477]	2038	print*,Ts1,Ts2,Ts3
[1524]	2039	endif
[959]	2040	end if
[253]	2041
	2042
[1477]	2043	! Check the energy balance of the simulation during the run
[253]	2044	if(corrk)then
	2045
[1542]	2046	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
	2047	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
	2048	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
	2049	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
	2050	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
[787]	2051	do ig=1,ngrid
[253]	2052	if(fluxtop_dn(ig).lt.0.0)then
	2053	print*,'fluxtop_dn has gone crazy'
	2054	print*,'fluxtop_dn=',fluxtop_dn(ig)
	2055	print*,'tau_col=',tau_col(ig)
	2056	print*,'aerosol=',aerosol(ig,:,:)
	2057	print*,'temp= ',pt(ig,:)
	2058	print*,'pplay= ',pplay(ig,:)
	2059	call abort
	2060	endif
	2061	end do
	2062
[787]	2063	if(ngrid.eq.1)then
[253]	2064	DYN=0.0
	2065	endif
[1524]	2066
	2067	if (is_master) then
[1477]	2068	print*,' ISR ASR OLR GND DYN [W m^-2]'
	2069	print*, ISR,ASR,OLR,GND,DYN
[1524]	2070	endif
[253]	2071
[1295]	2072	if(enertest .and. is_master)then
[651]	2073	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
	2074	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
	2075	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
[253]	2076	endif
	2077
[1295]	2078	if(meanOLR .and. is_master)then
[1216]	2079	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
[253]	2080	! to record global radiative balance
[588]	2081	open(92,file="rad_bal.out",form='formatted',position='append')
[651]	2082	write(92,*) zday,ISR,ASR,OLR
[253]	2083	close(92)
[588]	2084	open(93,file="tem_bal.out",form='formatted',position='append')
[1295]	2085	if(callsoil)then
[1524]	2086	write(93,*) zday,Ts1,Ts2,Ts3,TsS
	2087	else
	2088	write(93,*) zday,Ts1,Ts2,Ts3
	2089	endif
[253]	2090	close(93)
	2091	endif
	2092	endif
	2093
[1477]	2094	endif ! end of 'corrk'
[253]	2095
[651]	2096
[1477]	2097	! Diagnostic to test radiative-convective timescales in code.
[253]	2098	if(testradtimes)then
[588]	2099	open(38,file="tau_phys.out",form='formatted',position='append')
[253]	2100	ig=1
	2101	do l=1,nlayer
	2102	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
	2103	enddo
	2104	close(38)
[726]	2105	print*,'As testradtimes enabled,'
	2106	print*,'exiting physics on first call'
[253]	2107	call abort
	2108	endif
	2109
[1477]	2110
	2111	! Compute column amounts (kg m-2) if tracers are enabled.
[253]	2112	if(tracer)then
[787]	2113	qcol(1:ngrid,1:nq)=0.0
[253]	2114	do iq=1,nq
[1477]	2115	do ig=1,ngrid
	2116	qcol(ig,iq) = SUM( zq(ig,1:nlayer,iq) * mass(ig,1:nlayer))
	2117	enddo
[253]	2118	enddo
	2119
[1477]	2120	! Generalised for arbitrary aerosols now. By LK
[787]	2121	reffcol(1:ngrid,1:naerkind)=0.0
[728]	2122	if(co2cond.and.(iaero_co2.ne.0))then
[1308]	2123	call co2_reffrad(ngrid,nlayer,nq,zq,reffrad(1,1,iaero_co2))
[787]	2124	do ig=1,ngrid
[1308]	2125	reffcol(ig,iaero_co2) = SUM(zq(ig,1:nlayer,igcm_co2_ice)reffrad(ig,1:nlayer,iaero_co2)mass(ig,1:nlayer))
[253]	2126	enddo
[728]	2127	endif
	2128	if(water.and.(iaero_h2o.ne.0))then
[1308]	2129	call h2o_reffrad(ngrid,nlayer,zq(1,1,igcm_h2o_ice),zt, &
[858]	2130	reffrad(1,1,iaero_h2o),nueffrad(1,1,iaero_h2o))
[787]	2131	do ig=1,ngrid
[1308]	2132	reffcol(ig,iaero_h2o) = SUM(zq(ig,1:nlayer,igcm_h2o_ice)reffrad(ig,1:nlayer,iaero_h2o)mass(ig,1:nlayer))
[728]	2133	enddo
	2134	endif
[253]	2135
[1477]	2136	endif ! end of 'tracer'
[253]	2137
	2138
[1477]	2139	! Test for water conservation.
[253]	2140	if(water)then
	2141
[1542]	2142	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_ice)/totarea_planet,icesrf)
	2143	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_vap)/totarea_planet,liqsrf)
	2144	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_ice)/totarea_planet,icecol)
	2145	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_vap)/totarea_planet,vapcol)
[253]	2146
[651]	2147	h2otot = icesrf + liqsrf + icecol + vapcol
[1524]	2148
	2149	if (is_master) then
[1477]	2150	print*,' Total water amount [kg m^-2]: ',h2otot
	2151	print*,' Surface ice Surface liq. Atmos. con. Atmos. vap. [kg m^-2] '
	2152	print*, icesrf,liqsrf,icecol,vapcol
[1524]	2153	endif
[253]	2154
[1295]	2155	if(meanOLR .and. is_master)then
[1216]	2156	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
[253]	2157	! to record global water balance
[588]	2158	open(98,file="h2o_bal.out",form='formatted',position='append')
[651]	2159	write(98,*) zday,icesrf,liqsrf,icecol,vapcol
[253]	2160	close(98)
	2161	endif
	2162	endif
	2163
	2164	endif
	2165
	2166
[1477]	2167	! Calculate RH (Relative Humidity) for diagnostic.
[253]	2168	if(water)then
[1477]	2169
[253]	2170	do l = 1, nlayer
[787]	2171	do ig=1,ngrid
[728]	2172	call Psat_water(zt(ig,l),pplay(ig,l),psat_tmp,qsat(ig,l))
[253]	2173	RH(ig,l) = zq(ig,l,igcm_h2o_vap) / qsat(ig,l)
	2174	enddo
	2175	enddo
	2176
[1477]	2177	! Compute maximum possible H2O column amount (100% saturation).
[253]	2178	do ig=1,ngrid
[1477]	2179	H2Omaxcol(ig) = SUM( qsat(ig,:) * mass(ig,:))
[253]	2180	enddo
	2181
[1477]	2182	endif ! end of 'water'
[253]	2183
[2724]	2184	! Calculate RH_generic (Generic Relative Humidity) for diagnostic.
	2185	if(generic_condensation)then
[2802]	2186	RH_generic(:,:,:)=0.0
[2724]	2187	do iq=1,nq
[996]	2188
[2724]	2189	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
	2190
	2191	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
	2192
	2193	do l = 1, nlayer
	2194	do ig=1,ngrid
	2195	call Psat_generic(zt(ig,l),pplay(ig,l),metallicity,psat_tmp_generic,qsat_generic(ig,l,iq))
	2196	RH_generic(ig,l,iq) = zq(ig,l,igcm_generic_vap) / qsat_generic(ig,l,iq)
	2197	enddo
	2198	enddo
	2199
	2200	end if
	2201
	2202	end do ! iq=1,nq
	2203
	2204	endif ! end of 'generic_condensation'
	2205
	2206
[1699]	2207	if (is_master) print,'--> Ls =',zls180./pi
[1477]	2208
	2209
	2210	!----------------------------------------------------------------------
[253]	2211	! Writing NetCDF file "RESTARTFI" at the end of the run
[1477]	2212	!----------------------------------------------------------------------
	2213
[253]	2214	! Note: 'restartfi' is stored just before dynamics are stored
	2215	! in 'restart'. Between now and the writting of 'restart',
	2216	! there will have been the itau=itau+1 instruction and
	2217	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
	2218	! thus we store for time=time+dtvr
	2219
	2220
	2221
[1477]	2222	if(lastcall) then
	2223	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
[305]	2224
[1477]	2225	! Update surface ice distribution to iterate to steady state if requested
	2226	if(ice_update)then
[253]	2227
[1477]	2228	do ig=1,ngrid
[305]	2229
[1477]	2230	delta_ice = (qsurf(ig,igcm_h2o_ice)-ice_initial(ig))
	2231
	2232	! add multiple years of evolution
	2233	qsurf_hist(ig,igcm_h2o_ice) = qsurf_hist(ig,igcm_h2o_ice) + delta_ice*icetstep
[305]	2234
[1477]	2235	! if ice has gone -ve, set to zero
	2236	if(qsurf_hist(ig,igcm_h2o_ice).lt.0.0)then
	2237	qsurf_hist(ig,igcm_h2o_ice) = 0.0
	2238	endif
[305]	2239
[1477]	2240	! if ice is seasonal, set to zero (NEW)
	2241	if(ice_min(ig).lt.0.01)then
	2242	qsurf_hist(ig,igcm_h2o_ice) = 0.0
	2243	endif
[253]	2244
[1477]	2245	enddo
[305]	2246
[1477]	2247	! enforce ice conservation
[1542]	2248	ice_tot= SUM(qsurf_hist(:,igcm_h2o_ice)*cell_area(:) )/SUM(cell_area(:))
[1477]	2249	qsurf_hist(:,igcm_h2o_ice) = qsurf_hist(:,igcm_h2o_ice)*(icesrf/ice_tot)
[305]	2250
[1477]	2251	endif
[1836]	2252	#ifndef MESOSCALE
	2253
[1477]	2254	if (ngrid.ne.1) then
	2255	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
	2256
	2257	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
	2258	ptimestep,ztime_fin, &
	2259	tsurf,tsoil,emis,q2,qsurf_hist, &
	2260	cloudfrac,totcloudfrac,hice, &
	2261	rnat,pctsrf_sic,tslab,tsea_ice,sea_ice)
	2262	endif
[1836]	2263	#endif
[1477]	2264	if(ok_slab_ocean) then
	2265	call ocean_slab_final!(tslab, seaice)
	2266	end if
[1297]	2267
[1682]	2268	endif ! end of 'lastcall'
[253]	2269
[861]	2270
[2958]	2271	! -----------------------------------------------------------------
	2272	! WSTATS: Saving statistics
	2273	! -----------------------------------------------------------------
	2274	! ("stats" stores and accumulates key variables in file "stats.nc"
	2275	! which can later be used to make the statistic files of the run:
	2276	! if flag "callstats" from callphys.def is .true.)
[253]	2277
	2278
[1477]	2279	call wstats(ngrid,"ps","Surface pressure","Pa",2,ps)
	2280	call wstats(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	2281	call wstats(ngrid,"fluxsurf_lw", &
	2282	"Thermal IR radiative flux to surface","W.m-2",2, &
	2283	fluxsurf_lw)
	2284	call wstats(ngrid,"fluxtop_lw", &
	2285	"Thermal IR radiative flux to space","W.m-2",2, &
	2286	fluxtop_lw)
	2287
[253]	2288	! call wstats(ngrid,"fluxsurf_sw", &
	2289	! "Solar radiative flux to surface","W.m-2",2, &
[1477]	2290	! fluxsurf_sw_tot)
[253]	2291	! call wstats(ngrid,"fluxtop_sw", &
	2292	! "Solar radiative flux to space","W.m-2",2, &
	2293	! fluxtop_sw_tot)
[526]	2294
[253]	2295
[1477]	2296	call wstats(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
	2297	call wstats(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
	2298	call wstats(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
[1482]	2299	!call wstats(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
	2300	!call wstats(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
[1477]	2301	call wstats(ngrid,"p","Pressure","Pa",3,pplay)
	2302	call wstats(ngrid,"temp","Atmospheric temperature","K",3,zt)
	2303	call wstats(ngrid,"u","Zonal (East-West) wind","m.s-1",3,zu)
	2304	call wstats(ngrid,"v","Meridional (North-South) wind","m.s-1",3,zv)
	2305	call wstats(ngrid,"w","Vertical (down-up) wind","m.s-1",3,pw)
	2306	call wstats(ngrid,"q2","Boundary layer eddy kinetic energy","m2.s-2",3,q2)
[526]	2307
[1477]	2308	if (tracer) then
	2309	do iq=1,nq
	2310	call wstats(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
	2311	call wstats(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
	2312	'kg m^-2',2,qsurf(1,iq) )
	2313	call wstats(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
[526]	2314	'kg m^-2',2,qcol(1,iq) )
[1477]	2315
	2316	! call wstats(ngrid,trim(noms(iq))//'_reff', &
[726]	2317	! trim(noms(iq))//'_reff', &
	2318	! 'm',3,reffrad(1,1,iq))
[1477]	2319
	2320	end do
	2321
[253]	2322	if (water) then
[1308]	2323	vmr=zq(1:ngrid,1:nlayer,igcm_h2o_vap)*mugaz/mmol(igcm_h2o_vap)
[1477]	2324	call wstats(ngrid,"vmr_h2ovapor", &
	2325	"H2O vapour volume mixing ratio","mol/mol", &
	2326	3,vmr)
	2327	endif
[253]	2328
[1477]	2329	endif ! end of 'tracer'
[253]	2330
[1477]	2331	if(watercond.and.CLFvarying)then
	2332	call wstats(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
	2333	call wstats(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
	2334	call wstats(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
	2335	call wstats(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
	2336	call wstats(ngrid,"RH","relative humidity"," ",3,RH)
	2337	endif
[1297]	2338
[1477]	2339	if (ok_slab_ocean) then
[1297]	2340	call wstats(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
	2341	call wstats(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
	2342	call wstats(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
	2343	call wstats(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
	2344	call wstats(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
	2345	call wstats(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
	2346	call wstats(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
	2347	call wstats(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
	2348	call wstats(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
	2349	call wstats(ngrid,"rnat","nature of the surface","",2,rnat)
[1477]	2350	endif
[1297]	2351
[2958]	2352	if(lastcall.and.callstats) then
[1477]	2353	write (,) "Writing stats..."
	2354	call mkstats(ierr)
	2355	endif
	2356
[253]	2357
[1836]	2358	#ifndef MESOSCALE
	2359
[1477]	2360	!-----------------------------------------------------------------------------------------------------
	2361	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
	2362	!
	2363	! Note 1 : output with period "ecritphy", set in "run.def"
	2364	!
	2365	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
	2366	! but its preferable to keep all the calls in one place ...
	2367	!-----------------------------------------------------------------------------------------------------
[253]	2368
[1477]	2369	call writediagfi(ngrid,"Ls","solar longitude","deg",0,zls*180./pi)
	2370	call writediagfi(ngrid,"Lss","sub solar longitude","deg",0,zlss*180./pi)
	2371	call writediagfi(ngrid,"RA","right ascension","deg",0,right_ascen*180./pi)
	2372	call writediagfi(ngrid,"Declin","solar declination","deg",0,declin*180./pi)
	2373	call writediagfi(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	2374	call writediagfi(ngrid,"ps","Surface pressure","Pa",2,ps)
	2375	call writediagfi(ngrid,"temp","temperature","K",3,zt)
	2376	call writediagfi(ngrid,"teta","potential temperature","K",3,zh)
	2377	call writediagfi(ngrid,"u","Zonal wind","m.s-1",3,zu)
	2378	call writediagfi(ngrid,"v","Meridional wind","m.s-1",3,zv)
	2379	call writediagfi(ngrid,"w","Vertical wind","m.s-1",3,pw)
	2380	call writediagfi(ngrid,"p","Pressure","Pa",3,pplay)
	2381
[965]	2382	! Subsurface temperatures
[969]	2383	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	2384	! call writediagsoil(ngrid,"temp","temperature","K",3,tsoil)
[965]	2385
[1477]	2386	! Oceanic layers
	2387	if(ok_slab_ocean) then
	2388	call writediagfi(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
	2389	call writediagfi(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
	2390	call writediagfi(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
	2391	call writediagfi(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
	2392	call writediagfi(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
	2393	call writediagfi(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
	2394	call writediagfi(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
	2395	call writediagfi(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
	2396	call writediagfi(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
	2397	call writediagfi(ngrid,"rnat","nature of the surface","",2,rnat)
	2398	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
	2399	call writediagfi(ngrid,"latentFlux","latent heat flux","w.m^-2",2,zdqsdif(:,igcm_h2o_vap)*RLVTT)
	2400	endif
	2401
[2060]	2402	! Thermal plume model
	2403	if (calltherm) then
[2232]	2404	call writediagfi(ngrid,'entr','Entrainment','kg m$^{-2}$ s$^{-1}$', 3, entr)
	2405	call writediagfi(ngrid,'detr','Detrainment','kg m$^{-2}$ s$^{-1}$', 3, detr)
	2406	call writediagfi(ngrid,'fm','Mass flux','kg m$^{-2}$ s$^{-1}$', 3, fm_bis)
[2176]	2407	call writediagfi(ngrid,'w_plm','Squared vertical velocity','m s$^{-1}$', 3, zw2_bis)
[2060]	2408	call writediagfi(ngrid,'fraca','Updraft fraction','', 3, fraca)
	2409	endif
[2299]	2410
	2411	! GW non-oro outputs
	2412	if (calllott_nonoro) then
[2595]	2413	call WRITEDIAGFI(ngrid,"dugwno","GW non-oro dU","m/s2", 3,d_u_hin)
	2414	call WRITEDIAGFI(ngrid,"dvgwno","GW non-oro dV","m/s2", 3,d_v_hin)
[2299]	2415	endif
[2060]	2416
[1477]	2417	! Total energy balance diagnostics
	2418	if(callrad.and.(.not.newtonian))then
	2419
[1482]	2420	!call writediagfi(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
	2421	!call writediagfi(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
[1477]	2422	call writediagfi(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
	2423	call writediagfi(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
	2424	call writediagfi(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
	2425	call writediagfi(ngrid,"shad","rings"," ", 2, fract)
	2426
[1016]	2427	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
	2428	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
	2429	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
	2430	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
	2431	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
	2432	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
[1477]	2433
	2434	if(ok_slab_ocean) then
	2435	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrdocean)
	2436	else
	2437	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrd)
	2438	endif
	2439
	2440	call writediagfi(ngrid,"DYN","dynamical heat input","W m-2",2,fluxdyn)
	2441
	2442	endif ! end of 'callrad'
[1524]	2443
[1477]	2444	if(enertest) then
	2445
[1524]	2446	if (calldifv) then
[1477]	2447
[1524]	2448	call writediagfi(ngrid,"q2","turbulent kinetic energy","J.kg^-1",3,q2)
[1477]	2449	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
	2450
[1524]	2451	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
	2452	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
	2453	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
	2454
	2455	endif
[1477]	2456
[1524]	2457	if (corrk) then
	2458	call writediagfi(ngrid,"dEzradsw","radiative heating","w.m^-2",3,dEzradsw)
	2459	call writediagfi(ngrid,"dEzradlw","radiative heating","w.m^-2",3,dEzradlw)
	2460	endif
[1477]	2461
	2462	if(watercond) then
	2463
[1524]	2464	call writediagfi(ngrid,"lscaledE","heat from largescale","W m-2",2,lscaledE)
[2871]	2465	if ((.not.calltherm).and.moistadjustment) then
	2466	call writediagfi(ngrid,"madjdE","heat from moistadj","W m-2",2,madjdE)
	2467	endif
[1524]	2468	call writediagfi(ngrid,"qsatatm","atm qsat"," ",3,qsat)
[1477]	2469
[1524]	2470	! call writediagfi(ngrid,"lscaledEz","heat from largescale","W m-2",3,lscaledEz)
	2471	! call writediagfi(ngrid,"madjdEz","heat from moistadj","W m-2",3,madjdEz)
	2472	! call writediagfi(ngrid,"h2o_max_col","maximum H2O column amount","kg.m^-2",2,H2Omaxcol)
[253]	2473
[1477]	2474	endif
[2714]	2475
	2476	if (generic_condensation) then
	2477
	2478	call writediagfi(ngrid,"genericconddE","heat from generic condensation","W m-2",2,genericconddE)
[2890]	2479	call writediagfi(ngrid,"dt_generic_condensation","heating from generic condensation","K s-1",3,dt_generic_condensation)
[2714]	2480
	2481	endif
[1477]	2482
	2483	endif ! end of 'enertest'
[253]	2484
[2133]	2485	! Diagnostics of optical thickness
[2138]	2486	! Warning this is exp(-tau), I let you postproc with -log to have tau itself - JVO 19
[2133]	2487	if (diagdtau) then
	2488	do nw=1,L_NSPECTV
	2489	write(str2,'(i2.2)') nw
[2138]	2490	call writediagfi(ngrid,'dtauv'//str2,'Layer optical thickness attenuation in VI band '//str2,'',1,int_dtauv(:,nlayer:1:-1,nw))
[2133]	2491	enddo
	2492	do nw=1,L_NSPECTI
	2493	write(str2,'(i2.2)') nw
[2138]	2494	call writediagfi(ngrid,'dtaui'//str2,'Layer optical thickness attenuation in IR band '//str2,'',1,int_dtaui(:,nlayer:1:-1,nw))
[2133]	2495	enddo
	2496	endif
[1477]	2497
[2133]	2498
[1477]	2499	! Temporary inclusions for heating diagnostics.
[2831]	2500	call writediagfi(ngrid,"zdtsw","SW heating","T s-1",3,zdtsw)
	2501	call writediagfi(ngrid,"zdtlw","LW heating","T s-1",3,zdtlw)
[2299]	2502	call writediagfi(ngrid,"dtrad","radiative heating","K s-1",3,dtrad)
[2831]	2503	call writediagfi(ngrid,"zdtdyn","Dyn. heating","T s-1",3,zdtdyn)
[1477]	2504
	2505	! For Debugging.
[368]	2506	!call writediagfi(ngrid,'rnat','Terrain type',' ',2,real(rnat))
[253]	2507	!call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
[1477]	2508
[253]	2509
[1477]	2510	! Output aerosols.
	2511	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
[1524]	2512	call writediagfi(ngrid,'CO2ice_reff','CO2ice_reff','m',3,reffrad(1,1,iaero_co2))
[1477]	2513	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
[1524]	2514	call writediagfi(ngrid,'H2Oice_reff','H2Oice_reff','m',3,reffrad(:,:,iaero_h2o))
[1477]	2515	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
[1524]	2516	call writediagfi(ngrid,'CO2ice_reffcol','CO2ice_reffcol','um kg m^-2',2,reffcol(1,iaero_co2))
[1477]	2517	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
[1524]	2518	call writediagfi(ngrid,'H2Oice_reffcol','H2Oice_reffcol','um kg m^-2',2,reffcol(1,iaero_h2o))
[253]	2519
[1477]	2520	! Output tracers.
	2521	if (tracer) then
	2522
	2523	do iq=1,nq
	2524	call writediagfi(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
	2525	call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
	2526	'kg m^-2',2,qsurf_hist(1,iq) )
	2527	call writediagfi(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
	2528	'kg m^-2',2,qcol(1,iq) )
[787]	2529	! call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
[1477]	2530	! 'kg m^-2',2,qsurf(1,iq) )
[253]	2531
[1477]	2532	if(watercond.or.CLFvarying)then
	2533	call writediagfi(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
	2534	call writediagfi(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
	2535	call writediagfi(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
	2536	call writediagfi(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
[1524]	2537	call writediagfi(ngrid,"RH","relative humidity"," ",3,RH)
[1477]	2538	endif
[253]	2539
[1477]	2540	if(waterrain)then
	2541	call writediagfi(ngrid,"rain","rainfall","kg m-2 s-1",2,zdqsrain)
	2542	call writediagfi(ngrid,"snow","snowfall","kg m-2 s-1",2,zdqssnow)
[1859]	2543	call writediagfi(ngrid,"reevap","reevaporation of precipitation","kg m-2 s-1",2,reevap_precip)
[1477]	2544	endif
[253]	2545
[2724]	2546	if(generic_condensation)then
	2547	call writediagfi(ngrid,"rneb_generic","GCS cloud fraction (generic condensation)"," ",3,rneb_generic)
	2548	call writediagfi(ngrid,"CLF","GCS cloud fraction"," ",3,cloudfrac)
	2549	call writediagfi(ngrid,"RH_generic","GCS relative humidity"," ",3,RH_generic)
	2550	endif
	2551
[2721]	2552	if(generic_rain)then
	2553	call writediagfi(ngrid,"rain","generic rainfall","kg m-2 s-1",2,zdqsrain_generic)
	2554	call writediagfi(ngrid,"snow","generic snowfall","kg m-2 s-1",2,zdqssnow_generic)
	2555	call writediagfi(ngrid,"reevap","generic reevaporation of precipitation","kg m-2 s-1",2,reevap_precip_generic)
	2556	endif
	2557
[1477]	2558	if((hydrology).and.(.not.ok_slab_ocean))then
	2559	call writediagfi(ngrid,"hice","oceanic ice height","m",2,hice)
	2560	endif
[253]	2561
[1477]	2562	if(ice_update)then
	2563	call writediagfi(ngrid,"ice_min","min annual ice","m",2,ice_min)
	2564	call writediagfi(ngrid,"ice_ini","initial annual ice","m",2,ice_initial)
	2565	endif
[253]	2566
[2803]	2567	! do ig=1,ngrid
	2568	! if(tau_col(ig).gt.1.e3)then
	2569	! print*,'WARNING: tau_col=',tau_col(ig)
	2570	! print*,'at ig=',ig,'in PHYSIQ'
	2571	! endif
	2572	! end do
[253]	2573
[1477]	2574	call writediagfi(ngrid,"tau_col","Total aerosol optical depth","[]",2,tau_col)
[253]	2575
[1477]	2576	enddo ! end of 'nq' loop
	2577
	2578	endif ! end of 'tracer'
[253]	2579
[1477]	2580
	2581	! Output spectrum.
[526]	2582	if(specOLR.and.corrk)then
[728]	2583	call writediagspecIR(ngrid,"OLR3D","OLR(lon,lat,band)","W/m^2/cm^-1",3,OLR_nu)
	2584	call writediagspecVI(ngrid,"OSR3D","OSR(lon,lat,band)","W/m^2/cm^-1",3,OSR_nu)
[2537]	2585	call writediagspecVI(ngrid,"GSR3D","GSR(lon,lat,band)","W/m^2/cm^-1",3,GSR_nu)
[526]	2586	endif
[253]	2587
[1836]	2588	#else
[2865]	2589	comm_HR_SW(1:ngrid,1:nlayer) = zdtsw(1:ngrid,1:nlayer)
	2590	comm_HR_LW(1:ngrid,1:nlayer) = zdtlw(1:ngrid,1:nlayer)
[2871]	2591	comm_ALBEQ(1:ngrid)=albedo_equivalent(1:ngrid)
	2592	if (.not.calldifv) comm_LATENT_HF(:)=0.0
[2865]	2593	if ((tracer).and.(water)) then
	2594	comm_CLOUDFRAC(1:ngrid,1:nlayer)=cloudfrac(1:ngrid,1:nlayer)
	2595	comm_TOTCLOUDFRAC(1:ngrid)=totcloudfrac(1:ngrid)
	2596	comm_SURFRAIN(1:ngrid)=zdqsrain(1:ngrid)
	2597	comm_DQVAP(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_h2o_vap)
[2871]	2598	comm_DQICE(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_h2o_ice)
[2865]	2599	comm_H2OICE_REFF(1:ngrid,1:nlayer)=reffrad(1:ngrid,1:nlayer,iaero_h2o)
	2600	comm_REEVAP(1:ngrid)=reevap_precip(1:ngrid)
	2601	comm_DTRAIN(1:ngrid,1:nlayer)=zdtrain(1:ngrid,1:nlayer)
	2602	comm_DTLSC(1:ngrid,1:nlayer)=dtlscale(1:ngrid,1:nlayer)
	2603	comm_RH(1:ngrid,1:nlayer)=RH(1:ngrid,1:nlayer)
[2890]	2604
	2605	else if ((tracer).and.(generic_condensation).and.(.not. water)) then
	2606
	2607	! If you have set generic_condensation (and not water) and you have set several GCS
	2608	! then the outputs given to WRF will be only the ones for the last generic tracer
	2609	! (Because it is rewritten every tracer in the loop)
	2610	! WRF can take only one moist tracer
	2611
	2612	do iq=1,nq
	2613	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
	2614
	2615	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
	2616
	2617	reffrad_generic_zeros_for_wrf(:,:) = 1.
	2618
	2619	comm_CLOUDFRAC(1:ngrid,1:nlayer) = cloudfrac(1:ngrid,1:nlayer)
	2620	comm_TOTCLOUDFRAC(1:ngrid) = totcloudfrac(1:ngrid) !??????
	2621	comm_SURFRAIN(1:ngrid) = zdqsrain_generic(1:ngrid,iq)
	2622	comm_DQVAP(1:ngrid,1:nlayer) = pdq(1:ngrid,1:nlayer,igcm_generic_vap)
	2623	comm_DQICE(1:ngrid,1:nlayer)=pdq(1:ngrid,1:nlayer,igcm_generic_ice)
	2624	comm_H2OICE_REFF(1:ngrid,1:nlayer) = reffrad_generic_zeros_for_wrf(1:ngrid,1:nlayer) ! for now zeros !
	2625	!comm_H2OICE_REFF(1:ngrid,1:nlayer) = 0*zdtrain_generic(1:ngrid,1:nlayer) ! for now zeros !
	2626	comm_REEVAP(1:ngrid) = reevap_precip_generic(1:ngrid,iq)
	2627	comm_DTRAIN(1:ngrid,1:nlayer) = zdtrain_generic(1:ngrid,1:nlayer)
	2628	comm_DTLSC(1:ngrid,1:nlayer) = dt_generic_condensation(1:ngrid,1:nlayer)
	2629	comm_RH(1:ngrid,1:nlayer) = RH_generic(1:ngrid,1:nlayer,iq)
	2630
	2631	endif
	2632	end do ! do iq=1,nq loop on tracers
	2633
[2871]	2634	else
	2635	comm_CLOUDFRAC(1:ngrid,1:nlayer)=0.
	2636	comm_TOTCLOUDFRAC(1:ngrid)=0.
	2637	comm_SURFRAIN(1:ngrid)=0.
	2638	comm_DQVAP(1:ngrid,1:nlayer)=0.
	2639	comm_DQICE(1:ngrid,1:nlayer)=0.
	2640	comm_H2OICE_REFF(1:ngrid,1:nlayer)=0.
	2641	comm_REEVAP(1:ngrid)=0.
	2642	comm_DTRAIN(1:ngrid,1:nlayer)=0.
	2643	comm_DTLSC(1:ngrid,1:nlayer)=0.
	2644	comm_RH(1:ngrid,1:nlayer)=0.
[2890]	2645
	2646	endif ! if water, if generic_condensation, else
	2647
[2865]	2648	comm_FLUXTOP_DN(1:ngrid)=fluxtop_dn(1:ngrid)
	2649	comm_FLUXABS_SW(1:ngrid)=fluxabs_sw(1:ngrid)
	2650	comm_FLUXTOP_LW(1:ngrid)=fluxtop_lw(1:ngrid)
	2651	comm_FLUXSURF_SW(1:ngrid)=fluxsurf_sw(1:ngrid)
	2652	comm_FLUXSURF_LW(1:ngrid)=fluxsurf_lw(1:ngrid)
	2653	comm_FLXGRD(1:ngrid)=fluxgrd(1:ngrid)
	2654	sensibFlux(1:ngrid) = zflubid(1:ngrid) - capcal(1:ngrid)*zdtsdif(1:ngrid) !!! ????
	2655	comm_HR_DYN(1:ngrid,1:nlayer) = zdtdyn(1:ngrid,1:nlayer)
[2019]	2656
[2867]	2657	! if (turb_resolved) then
	2658	! open(17,file='lsf.txt',form='formatted',status='old')
	2659	! rewind(17)
	2660	! DO l=1,nlayer
	2661	! read(17,*) lsf_dt(l),lsf_dq(l)
	2662	! ENDDO
	2663	! close(17)
	2664	! do ig=1,ngrid
	2665	! if ((tracer).and.(water)) then
	2666	! pdq(ig,:,igcm_h2o_vap) = pdq(ig,:,igcm_h2o_vap) + lsf_dq(:)
	2667	! endif
	2668	! pdt(ig,:) = pdt(ig,:) + lsf_dt(:)
	2669	! comm_HR_DYN(ig,:) = lsf_dt(:)
	2670	! enddo
	2671	! endif
[1836]	2672	#endif
	2673
[1622]	2674	! XIOS outputs
	2675	#ifdef CPP_XIOS
	2676	! Send fields to XIOS: (NB these fields must also be defined as
	2677	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
[1626]	2678	CALL send_xios_field("ls",zls)
	2679
[1622]	2680	CALL send_xios_field("ps",ps)
	2681	CALL send_xios_field("area",cell_area)
[2839]	2682	CALL send_xios_field("p",pplay)
[1622]	2683	CALL send_xios_field("temperature",zt)
	2684	CALL send_xios_field("u",zu)
	2685	CALL send_xios_field("v",zv)
[1877]	2686	CALL send_xios_field("omega",omega)
[2060]	2687
[2114]	2688	IF (calltherm) THEN
[2176]	2689	CALL send_xios_field('w_plm',zw2_bis)
[2232]	2690	CALL send_xios_field('entr',entr)
	2691	CALL send_xios_field('detr',detr)
	2692	! CALL send_xios_field('fm',fm_bis)
	2693	! CALL send_xios_field('fraca',fraca)
[2114]	2694	ENDIF
[2127]	2695
[2114]	2696	IF (water) THEN
	2697	CALL send_xios_field('h2o_vap',zq(:,:,igcm_h2o_vap))
	2698	CALL send_xios_field('h2o_ice',zq(:,:,igcm_h2o_ice))
[2985]	2699
	2700	CALL send_xios_field('h2o_layer1',zq(:,1,igcm_h2o_vap))
	2701	CALL send_xios_field('co2_layer1',zq(:,1,igcm_co2_ice))
	2702	CALL send_xios_field('tsurf',tsurf)
	2703	CALL send_xios_field('co2ice',qsurf(1:ngrid,igcm_co2_ice))
	2704	CALL send_xios_field('h2o_ice_s',qsurf(1:ngrid,igcm_h2o_ice))
[2114]	2705	ENDIF
[2891]	2706
[1877]	2707	CALL send_xios_field("ISR",fluxtop_dn)
	2708	CALL send_xios_field("OLR",fluxtop_lw)
[2733]	2709	CALL send_xios_field("ASR",fluxabs_sw)
[2734]	2710
	2711	if (specOLR .and. corrk) then
	2712	call send_xios_field("OLR3D",OLR_nu)
	2713	call send_xios_field("IR_Bandwidth",DWNI)
	2714	call send_xios_field("VI_Bandwidth",DWNV)
	2715	call send_xios_field("OSR3D",OSR_nu)
	2716	call send_xios_field("GSR3D",GSR_nu)
	2717	endif
	2718
[1682]	2719	if (lastcall.and.is_omp_master) then
	2720	write(,) "physiq: call xios_context_finalize"
	2721	call xios_context_finalize
	2722	endif
[1622]	2723	#endif
[2060]	2724
[2663]	2725	if (check_physics_outputs) then
	2726	! Check the validity of updated fields at the end of the physics step
	2727	call check_physics_fields("end of physiq:", zt, zu, zv, pplev, zq)
	2728	endif
	2729
[253]	2730	icount=icount+1
[2060]	2731
	2732	end subroutine physiq
	2733
	2734	end module physiq_mod

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