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physiq_mod.F90 @ 2757

Last change on this file since 2757 was 2736, checked in by aslmd, 3 years ago
Changed of callcorrk to physiq_mod
Property svn:executable set to ``*
File size: 114.5 KB

Rev	Line
[1549]	1	module physiq_mod
	2
	3	implicit none
	4
	5	contains
	6
[751]	7	subroutine physiq(ngrid,nlayer,nq, &
[787]	8	nametrac, &
[253]	9	firstcall,lastcall, &
	10	pday,ptime,ptimestep, &
	11	pplev,pplay,pphi, &
	12	pu,pv,pt,pq, &
[1312]	13	flxw, &
[1576]	14	pdu,pdv,pdt,pdq,pdpsrf)
[2663]	15
	16	use ioipsl_getin_p_mod, only: getin_p
[2736]	17	use radinc_h, only : L_NSPECTI,L_NSPECTV,naerkind, corrkdir, banddir
[2060]	18	use watercommon_h, only : RLVTT, Psat_water,epsi,su_watercycle, RV, T_h2o_ice_liq
[2728]	19	use generic_cloud_common_h, only : epsi_generic, Psat_generic
[2129]	20	use thermcell_mod, only: init_thermcell_mod
[1216]	21	use gases_h, only: gnom, gfrac
[2736]	22	use radcommon_h, only: sigma, glat, grav, BWNV, WNOI, DWNI, DWNV, WNOV
[1308]	23	use radii_mod, only: h2o_reffrad, co2_reffrad
[1216]	24	use aerosol_mod, only: iaero_co2, iaero_h2o
[1482]	25	use surfdat_h, only: phisfi, zmea, zstd, zsig, zgam, zthe, &
[1216]	26	dryness, watercaptag
	27	use comdiurn_h, only: coslat, sinlat, coslon, sinlon
[1327]	28	use comsaison_h, only: mu0, fract, dist_star, declin, right_ascen
[1216]	29	use comsoil_h, only: nsoilmx, layer, mlayer, inertiedat
[1543]	30	use geometry_mod, only: latitude, longitude, cell_area
[1542]	31	USE comgeomfi_h, only: totarea, totarea_planet
[1216]	32	USE tracer_h, only: noms, mmol, radius, rho_q, qext, &
	33	alpha_lift, alpha_devil, qextrhor, &
	34	igcm_h2o_ice, igcm_h2o_vap, igcm_dustbin, &
[2728]	35	igcm_co2_ice, nesp, is_chim, is_condensable,constants_epsi_generic
[1525]	36	use time_phylmdz_mod, only: ecritphy, iphysiq, nday
[1669]	37	use phyetat0_mod, only: phyetat0
[1216]	38	use phyredem, only: physdem0, physdem1
[1529]	39	use slab_ice_h, only: capcalocean, capcalseaice,capcalsno, &
	40	noceanmx
[1297]	41	use ocean_slab_mod, only :ocean_slab_init, ocean_slab_ice, &
[1529]	42	ini_surf_heat_transp_mod, &
[1297]	43	ocean_slab_get_vars,ocean_slab_final
	44	use surf_heat_transp_mod,only :init_masquv
[1295]	45	use planetwide_mod, only: planetwide_minval,planetwide_maxval,planetwide_sumval
	46	use mod_phys_lmdz_para, only : is_master
[1308]	47	use planete_mod, only: apoastr, periastr, year_day, peri_day, &
	48	obliquit, nres, z0
[1524]	49	use comcstfi_mod, only: pi, g, rcp, r, rad, mugaz, cpp
	50	use time_phylmdz_mod, only: daysec
[2446]	51	use callkeys_mod, only: albedo_spectral_mode, calladj, calldifv, &
[2603]	52	calllott_nonoro, callrad, callsoil, nosurf, &
	53	callstats, &
[2446]	54	calltherm, CLFvarying, co2cond, corrk, diagdtau, &
	55	diurnal, enertest, fat1au, flatten, j2, &
	56	hydrology, icetstep, intheat, iradia, kastprof, &
	57	lwrite, mass_redistrib, massplanet, meanOLR, &
	58	nearco2cond, newtonian, noseason_day, oblate, &
	59	ok_slab_ocean, photochem, rings_shadow, rmean, &
[2700]	60	season, sedimentation,generic_condensation, &
	61	sourceevol, specOLR, &
[2446]	62	startphy_file, testradtimes, tlocked, &
	63	tracer, UseTurbDiff, water, watercond, &
[2721]	64	waterrain, generic_rain, global1d, szangle
	65	use generic_tracer_index_mod, only: generic_tracer_index
[2299]	66	use nonoro_gwd_ran_mod, only: nonoro_gwd_ran
[2663]	67	use check_fields_mod, only: check_physics_fields
[2595]	68	use conc_mod, only: rnew, cpnew, ini_conc_mod
[1836]	69	use phys_state_var_mod
[2032]	70	use callcorrk_mod, only: callcorrk
[2427]	71	use vdifc_mod, only: vdifc
	72	use turbdiff_mod, only: turbdiff
[1836]	73	use turb_mod, only : q2,sensibFlux,turb_resolved
[2428]	74	use mass_redistribution_mod, only: mass_redistribution
[2701]	75	use condensation_generic_mod, only: condensation_generic
[2736]	76	use datafile_mod, only: datadir
[1836]	77	#ifndef MESOSCALE
[1622]	78	use vertical_layers_mod, only: presnivs, pseudoalt
[1682]	79	use mod_phys_lmdz_omp_data, ONLY: is_omp_master
[1836]	80	#else
	81	use comm_wrf, only : comm_HR_SW, comm_HR_LW, &
	82	comm_CLOUDFRAC,comm_TOTCLOUDFRAC,&
[2058]	83	comm_SURFRAIN,comm_REEVAP,comm_HR_DYN,&
[1836]	84	comm_RAIN,comm_SNOW,comm_ALBEQ,&
	85	comm_FLUXTOP_DN,comm_FLUXABS_SW,&
	86	comm_FLUXTOP_LW,comm_FLUXSURF_SW,&
	87	comm_FLUXSURF_LW,comm_FLXGRD,&
	88	comm_LSCEZ,comm_H2OICE_REFF
	89	#endif
	90
[1623]	91	#ifdef CPP_XIOS
[1622]	92	use xios_output_mod, only: initialize_xios_output, &
	93	update_xios_timestep, &
	94	send_xios_field
[1682]	95	use wxios, only: wxios_context_init, xios_context_finalize
[1623]	96	#endif
[1836]	97
[253]	98	implicit none
	99
	100
	101	!==================================================================
	102	!
	103	! Purpose
	104	! -------
	105	! Central subroutine for all the physics parameterisations in the
	106	! universal model. Originally adapted from the Mars LMDZ model.
	107	!
	108	! The model can be run without or with tracer transport
	109	! depending on the value of "tracer" in file "callphys.def".
	110	!
	111	!
	112	! It includes:
	113	!
[1477]	114	! I. Initialization :
	115	! I.1 Firstcall initializations.
	116	! I.2 Initialization for every call to physiq.
[253]	117	!
[1477]	118	! II. Compute radiative transfer tendencies (longwave and shortwave) :
	119	! II.a Option 1 : Call correlated-k radiative transfer scheme.
	120	! II.b Option 2 : Call Newtonian cooling scheme.
	121	! II.c Option 3 : Atmosphere has no radiative effect.
	122	!
	123	! III. Vertical diffusion (turbulent mixing) :
	124	!
[2060]	125	! IV. Convection :
	126	! IV.a Thermal plume model
	127	! IV.b Dry convective adjusment
[1477]	128	!
	129	! V. Condensation and sublimation of gases (currently just CO2).
	130	!
	131	! VI. Tracers
	132	! VI.1. Water and water ice.
[1801]	133	! VI.2 Photochemistry
	134	! VI.3. Aerosols and particles.
	135	! VI.4. Updates (pressure variations, surface budget).
	136	! VI.5. Slab Ocean.
	137	! VI.6. Surface Tracer Update.
[1477]	138	!
	139	! VII. Surface and sub-surface soil temperature.
	140	!
	141	! VIII. Perform diagnostics and write output files.
	142	!
	143	!
[253]	144	! arguments
	145	! ---------
	146	!
[1477]	147	! INPUT
[253]	148	! -----
[1477]	149	!
[253]	150	! ngrid Size of the horizontal grid.
	151	! nlayer Number of vertical layers.
[1477]	152	! nq Number of advected fields.
	153	! nametrac Name of corresponding advected fields.
	154	!
	155	! firstcall True at the first call.
	156	! lastcall True at the last call.
	157	!
	158	! pday Number of days counted from the North. Spring equinoxe.
	159	! ptime Universal time (0<ptime<1): ptime=0.5 at 12:00 UT.
	160	! ptimestep timestep (s).
	161	!
	162	! pplay(ngrid,nlayer) Pressure at the middle of the layers (Pa).
	163	! pplev(ngrid,nlayer+1) Intermediate pressure levels (Pa).
	164	! pphi(ngrid,nlayer) Geopotential at the middle of the layers (m2.s-2).
	165	!
	166	! pu(ngrid,nlayer) u, zonal component of the wind (ms-1).
	167	! pv(ngrid,nlayer) v, meridional component of the wind (ms-1).
	168	!
	169	! pt(ngrid,nlayer) Temperature (K).
	170	!
	171	! pq(ngrid,nlayer,nq) Advected fields.
	172	!
[1216]	173	! pudyn(ngrid,nlayer) \
[253]	174	! pvdyn(ngrid,nlayer) \ Dynamical temporal derivative for the
[1477]	175	! ptdyn(ngrid,nlayer) / corresponding variables.
[253]	176	! pqdyn(ngrid,nlayer,nq) /
[1312]	177	! flxw(ngrid,nlayer) vertical mass flux (kg/s) at layer lower boundary
[253]	178	!
[1477]	179	! OUTPUT
[253]	180	! ------
	181	!
[1308]	182	! pdu(ngrid,nlayer) \
	183	! pdv(ngrid,nlayer) \ Temporal derivative of the corresponding
	184	! pdt(ngrid,nlayer) / variables due to physical processes.
	185	! pdq(ngrid,nlayer) /
[253]	186	! pdpsrf(ngrid) /
	187	!
	188	!
	189	! Authors
	190	! -------
[1524]	191	! Frederic Hourdin 15/10/93
	192	! Francois Forget 1994
	193	! Christophe Hourdin 02/1997
[253]	194	! Subroutine completely rewritten by F. Forget (01/2000)
	195	! Water ice clouds: Franck Montmessin (update 06/2003)
	196	! Radiatively active tracers: J.-B. Madeleine (10/2008-06/2009)
	197	! New correlated-k radiative scheme: R. Wordsworth (2009)
	198	! Many specifically Martian subroutines removed: R. Wordsworth (2009)
	199	! Improved water cycle: R. Wordsworth / B. Charnay (2010)
	200	! To F90: R. Wordsworth (2010)
[594]	201	! New turbulent diffusion scheme: J. Leconte (2012)
[716]	202	! Loops converted to F90 matrix format: J. Leconte (2012)
[787]	203	! No more ngridmx/nqmx, F90 commons and adaptation to parallel: A. Spiga (2012)
[1477]	204	! Purge of the code : M. Turbet (2015)
[1801]	205	! Photochemical core developped by F. Lefevre: B. Charnay (2017)
[253]	206	!==================================================================
	207
	208
	209	! 0. Declarations :
	210	! ------------------
	211
[1669]	212	include "netcdf.inc"
[253]	213
	214	! Arguments :
	215	! -----------
	216
[1477]	217	! INPUTS:
[253]	218	! -------
	219
[1477]	220	integer,intent(in) :: ngrid ! Number of atmospheric columns.
	221	integer,intent(in) :: nlayer ! Number of atmospheric layers.
	222	integer,intent(in) :: nq ! Number of tracers.
[1984]	223	character*30,intent(in) :: nametrac(nq) ! Names of the tracers taken from dynamics.
[1477]	224
	225	logical,intent(in) :: firstcall ! Signals first call to physics.
	226	logical,intent(in) :: lastcall ! Signals last call to physics.
	227
	228	real,intent(in) :: pday ! Number of elapsed sols since reference Ls=0.
	229	real,intent(in) :: ptime ! "Universal time", given as fraction of sol (e.g.: 0.5 for noon).
	230	real,intent(in) :: ptimestep ! Physics timestep (s).
	231	real,intent(in) :: pplev(ngrid,nlayer+1) ! Inter-layer pressure (Pa).
	232	real,intent(in) :: pplay(ngrid,nlayer) ! Mid-layer pressure (Pa).
	233	real,intent(in) :: pphi(ngrid,nlayer) ! Geopotential at mid-layer (m2s-2).
	234	real,intent(in) :: pu(ngrid,nlayer) ! Zonal wind component (m/s).
	235	real,intent(in) :: pv(ngrid,nlayer) ! Meridional wind component (m/s).
	236	real,intent(in) :: pt(ngrid,nlayer) ! Temperature (K).
	237	real,intent(in) :: pq(ngrid,nlayer,nq) ! Tracers (kg/kg_of_air).
	238	real,intent(in) :: flxw(ngrid,nlayer) ! Vertical mass flux (ks/s) at lower boundary of layer
[253]	239
[1477]	240	! OUTPUTS:
[253]	241	! --------
	242
[1477]	243	! Physical tendencies :
	244
	245	real,intent(out) :: pdu(ngrid,nlayer) ! Zonal wind tendencies (m/s/s).
	246	real,intent(out) :: pdv(ngrid,nlayer) ! Meridional wind tendencies (m/s/s).
	247	real,intent(out) :: pdt(ngrid,nlayer) ! Temperature tendencies (K/s).
	248	real,intent(out) :: pdq(ngrid,nlayer,nq) ! Tracer tendencies (kg/kg_of_air/s).
	249	real,intent(out) :: pdpsrf(ngrid) ! Surface pressure tendency (Pa/s).
	250
[253]	251	! Local saved variables:
	252	! ----------------------
[1622]	253	integer,save :: day_ini ! Initial date of the run (sol since Ls=0).
	254	integer,save :: icount ! Counter of calls to physiq during the run.
	255	!$OMP THREADPRIVATE(day_ini,icount)
	256
[253]	257	! Local variables :
	258	! -----------------
	259
[1477]	260	! Aerosol (dust or ice) extinction optical depth at reference wavelength
[253]	261	! for the "naerkind" optically active aerosols:
	262
[1477]	263	real aerosol(ngrid,nlayer,naerkind) ! Aerosols.
	264	real zh(ngrid,nlayer) ! Potential temperature (K).
	265	real pw(ngrid,nlayer) ! Vertical velocity (m/s). (NOTE : >0 WHEN DOWNWARDS !!)
[1877]	266	real omega(ngrid,nlayer) ! omega velocity (Pa/s, >0 when downward)
[1477]	267
[2721]	268	integer l,ig,ierr,iq,nw,isoil,iesp, igcm_generic_vap, igcm_generic_ice
[2722]	269	logical call_ice_vap_generic ! to call only one time the ice/vap pair of a tracer
[1161]	270
[1477]	271	real zls ! Solar longitude (radians).
	272	real zlss ! Sub solar point longitude (radians).
	273	real zday ! Date (time since Ls=0, calculated in sols).
	274	real zzlay(ngrid,nlayer) ! Altitude at the middle of the atmospheric layers.
	275	real zzlev(ngrid,nlayer+1) ! Altitude at the atmospheric layer boundaries.
[253]	276
[2060]	277	! VARIABLES for the thermal plume model
	278
[2232]	279	real f(ngrid) ! Mass flux norm
	280	real fm(ngrid,nlayer+1) ! Mass flux
	281	real fm_bis(ngrid,nlayer) ! Recasted fm
	282	real entr(ngrid,nlayer) ! Entrainment
	283	real detr(ngrid,nlayer) ! Detrainment
[2105]	284	real dqevap(ngrid,nlayer,nq) ! water tracer mass mixing ratio variations due to evaporation
	285	real dtevap(ngrid,nlayer) ! temperature variation due to evaporation
	286	real zqtherm(ngrid,nlayer,nq) ! vapor mass mixing ratio after evaporation
	287	real zttherm(ngrid,nlayer) ! temperature after evaporation
[2232]	288	real fraca(ngrid,nlayer+1) ! Fraction of the surface that plumes occupies
	289	real zw2(ngrid,nlayer+1) ! Vertical speed
	290	real zw2_bis(ngrid,nlayer) ! Recasted zw2
	291
[1477]	292	! TENDENCIES due to various processes :
[253]	293
[1477]	294	! For Surface Temperature : (K/s)
	295	real zdtsurf(ngrid) ! Cumulated tendencies.
	296	real zdtsurfmr(ngrid) ! Mass_redistribution routine.
	297	real zdtsurfc(ngrid) ! Condense_co2 routine.
	298	real zdtsdif(ngrid) ! Turbdiff/vdifc routines.
	299	real zdtsurf_hyd(ngrid) ! Hydrol routine.
	300
	301	! For Atmospheric Temperatures : (K/s)
	302	real dtlscale(ngrid,nlayer) ! Largescale routine.
[2701]	303	real dtlscale_generic(ngrid,nlayer) ! condensation_generic routine.
[1477]	304	real zdtc(ngrid,nlayer) ! Condense_co2 routine.
[2060]	305	real zdtdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
	306	real zdttherm(ngrid,nlayer) ! Calltherm routine.
[1477]	307	real zdtmr(ngrid,nlayer) ! Mass_redistribution routine.
	308	real zdtrain(ngrid,nlayer) ! Rain routine.
[2721]	309	real zdtrain_generic(ngrid,nlayer) ! Rain_generic routine.
[1477]	310	real dtmoist(ngrid,nlayer) ! Moistadj routine.
	311	real dt_ekman(ngrid,noceanmx), dt_hdiff(ngrid,noceanmx) ! Slab_ocean routine.
	312	real zdtsw1(ngrid,nlayer), zdtlw1(ngrid,nlayer) ! Callcorrk routine.
[2542]	313	real zdtchim(ngrid,nlayer) ! Calchim routine.
[1477]	314
	315	! For Surface Tracers : (kg/m2/s)
	316	real dqsurf(ngrid,nq) ! Cumulated tendencies.
[1484]	317	real zdqsurfc(ngrid) ! Condense_co2 routine.
[1477]	318	real zdqsdif(ngrid,nq) ! Turbdiff/vdifc routines.
	319	real zdqssed(ngrid,nq) ! Callsedim routine.
	320	real zdqsurfmr(ngrid,nq) ! Mass_redistribution routine.
	321	real zdqsrain(ngrid), zdqssnow(ngrid) ! Rain routine.
[2721]	322	real zdqsrain_generic(ngrid,nq), zdqssnow_generic(ngrid,nq) ! Rain_generic routine.
[1477]	323	real dqs_hyd(ngrid,nq) ! Hydrol routine.
[1859]	324	real reevap_precip(ngrid) ! re-evaporation flux of precipitation (integrated over the atmospheric column)
[2721]	325	real reevap_precip_generic(ngrid,nq)
[1477]	326
	327	! For Tracers : (kg/kg_of_air/s)
	328	real zdqc(ngrid,nlayer,nq) ! Condense_co2 routine.
	329	real zdqadj(ngrid,nlayer,nq) ! Convadj routine.
	330	real zdqdif(ngrid,nlayer,nq) ! Turbdiff/vdifc routines.
	331	real zdqevap(ngrid,nlayer) ! Turbdiff routine.
[2129]	332	real zdqtherm(ngrid,nlayer,nq) ! Calltherm routine.
[1477]	333	real zdqsed(ngrid,nlayer,nq) ! Callsedim routine.
	334	real zdqmr(ngrid,nlayer,nq) ! Mass_redistribution routine.
	335	real zdqrain(ngrid,nlayer,nq) ! Rain routine.
	336	real dqmoist(ngrid,nlayer,nq) ! Moistadj routine.
	337	real dqvaplscale(ngrid,nlayer) ! Largescale routine.
	338	real dqcldlscale(ngrid,nlayer) ! Largescale routine.
[2721]	339	real dqvaplscale_generic(ngrid,nlayer,nq) ! condensation_generic routine.
	340	real dqcldlscale_generic(ngrid,nlayer,nq) ! condensation_generic routine.
	341	real dq_rain_generic_vap(ngrid,nlayer,nq) ! rain_generic routine
	342	real dq_rain_generic_cld(ngrid,nlayer,nq) ! rain_generic routine
[2542]	343	REAL,allocatable,save :: zdqchim(:,:,:) ! Calchim_asis routine
	344	REAL,allocatable,save :: zdqschim(:,:) ! Calchim_asis routine
[1801]	345
	346	REAL array_zero1(ngrid)
	347	REAL array_zero2(ngrid,nlayer)
[1477]	348
	349	! For Winds : (m/s/s)
[2060]	350	real zdvadj(ngrid,nlayer), zduadj(ngrid,nlayer) ! Convadj routine.
	351	real zdutherm(ngrid,nlayer), zdvtherm(ngrid,nlayer) ! Calltherm routine.
	352	real zdumr(ngrid,nlayer), zdvmr(ngrid,nlayer) ! Mass_redistribution routine.
	353	real zdvdif(ngrid,nlayer), zdudif(ngrid,nlayer) ! Turbdiff/vdifc routines.
	354	real zdhdif(ngrid,nlayer) ! Turbdiff/vdifc routines.
	355	real zdhadj(ngrid,nlayer) ! Convadj routine.
[1477]	356
	357	! For Pressure and Mass :
	358	real zdmassmr(ngrid,nlayer) ! Atmospheric Mass tendency for mass_redistribution (kg_of_air/m2/s).
	359	real zdmassmr_col(ngrid) ! Atmospheric Column Mass tendency for mass_redistribution (kg_of_air/m2/s).
	360	real zdpsrfmr(ngrid) ! Pressure tendency for mass_redistribution routine (Pa/s).
[253]	361
[1477]	362
	363
	364	! Local variables for LOCAL CALCULATIONS:
	365	! ---------------------------------------
[787]	366	real zflubid(ngrid)
[1308]	367	real zplanck(ngrid),zpopsk(ngrid,nlayer)
[253]	368	real ztim1,ztim2,ztim3, z1,z2
	369	real ztime_fin
[1308]	370	real zdh(ngrid,nlayer)
[1194]	371	real gmplanet
[1297]	372	real taux(ngrid),tauy(ngrid)
[1194]	373
[253]	374
[1477]	375	! local variables for DIAGNOSTICS : (diagfi & stat)
	376	! -------------------------------------------------
	377	real ps(ngrid) ! Surface Pressure.
	378	real zt(ngrid,nlayer) ! Atmospheric Temperature.
	379	real zu(ngrid,nlayer),zv(ngrid,nlayer) ! Zonal and Meridional Winds.
	380	real zq(ngrid,nlayer,nq) ! Atmospheric Tracers.
	381	real zdtadj(ngrid,nlayer) ! Convadj Diagnostic.
	382	real zdtdyn(ngrid,nlayer) ! Dynamical Heating (K/s).
[1637]	383	real zdudyn(ngrid,nlayer) ! Dynamical Zonal Wind tendency (m.s-2).
[253]	384
[1477]	385	real reff(ngrid,nlayer) ! Effective dust radius (used if doubleq=T).
	386	real vmr(ngrid,nlayer) ! volume mixing ratio
[253]	387	real time_phys
[597]	388
[1477]	389	real ISR,ASR,OLR,GND,DYN,GSR,Ts1,Ts2,Ts3,TsS ! for Diagnostic.
	390
	391	real qcol(ngrid,nq) ! Tracer Column Mass (kg/m2).
[253]	392
	393	! included by RW for H2O Manabe scheme
[1477]	394	real rneb_man(ngrid,nlayer) ! H2O cloud fraction (moistadj).
	395	real rneb_lsc(ngrid,nlayer) ! H2O cloud fraction (large scale).
[253]	396
	397
[594]	398	! to test energy conservation (RW+JL)
[1308]	399	real mass(ngrid,nlayer),massarea(ngrid,nlayer)
[651]	400	real dEtot, dEtots, AtmToSurf_TurbFlux
[959]	401	real,save :: dEtotSW, dEtotsSW, dEtotLW, dEtotsLW
[1315]	402	!$OMP THREADPRIVATE(dEtotSW, dEtotsSW, dEtotLW, dEtotsLW)
[1477]	403
[594]	404	!JL12 conservation test for mean flow kinetic energy has been disabled temporarily
[1477]	405
	406	real dtmoist_max,dtmoist_min
[1295]	407	real dItot, dItot_tmp, dVtot, dVtot_tmp
[253]	408
	409
[1477]	410	real h2otot ! Total Amount of water. For diagnostic.
	411	real icesrf,liqsrf,icecol,vapcol ! Total Amounts of water (ice,liq,vap). For diagnostic.
[1295]	412	real dWtot, dWtot_tmp, dWtots, dWtots_tmp
[1477]	413	logical,save :: watertest
[1315]	414	!$OMP THREADPRIVATE(watertest)
[253]	415
[1477]	416	real qsat(ngrid,nlayer) ! Water Vapor Volume Mixing Ratio at saturation (kg/kg_of_air).
	417	real RH(ngrid,nlayer) ! Relative humidity.
	418	real psat_tmp
[2724]	419
	420	real qsat_generic(ngrid,nlayer,nq) ! generic condensable tracers (GCS) specific concentration at saturation (kg/kg_of_air).
	421	real RH_generic(ngrid,nlayer,nq) ! generic condensable tracers (GCS) Relative humidity.
	422	real rneb_generic(ngrid,nlayer,nq) ! GCS cloud fraction (generic condensation).
	423	real psat_tmp_generic
[2726]	424	real, save :: metallicity ! metallicity of planet --- is not used here, but necessary to call function Psat_generic
	425	!$OMP THREADPRIVATE(metallicity)
	426
[1477]	427	logical clearsky ! For double radiative transfer call. By BC
	428
[1482]	429	! For Clear Sky Case.
[2485]	430	real fluxsurfabs_sw1(ngrid) ! For SW/LW flux.
[1482]	431	real tau_col1(ngrid) ! For aerosol optical depth diagnostic.
[2537]	432	real OLR_nu1(ngrid,L_NSPECTI) ! Clear sky TOA LW radiation in each IR band
	433	real OSR_nu1(ngrid,L_NSPECTV) ! Clear sky TOA SW radiation in each VI band
	434	real GSR_nu1(ngrid,L_NSPECTV) ! Clear sky Surface SW radiation in each VI band
[2133]	435	real int_dtaui1(ngrid,nlayer,L_NSPECTI),int_dtauv1(ngrid,nlayer,L_NSPECTV) ! For optical thickness diagnostics.
[253]	436	real tf, ntf
	437
[1477]	438	real nconsMAX, vdifcncons(ngrid), cadjncons(ngrid) ! Vdfic water conservation test. By RW
[253]	439
[1477]	440	real muvar(ngrid,nlayer+1) ! For Runaway Greenhouse 1D study. By RW
[253]	441
[787]	442	real reffcol(ngrid,naerkind)
[253]	443
[1477]	444	! Sourceevol for 'accelerated ice evolution'. By RW
[305]	445	real delta_ice,ice_tot
[253]	446	integer num_run
[728]	447	logical,save :: ice_update
[2299]	448	! Non-oro GW tendencies
	449	REAL d_u_hin(ngrid,nlayer), d_v_hin(ngrid,nlayer)
	450	REAL d_t_hin(ngrid,nlayer)
	451	! Diagnostics 2D of gw_nonoro
	452	REAL zustrhi(ngrid), zvstrhi(ngrid)
[996]	453
[1297]	454
	455	real :: tsurf2(ngrid)
[2485]	456	real :: flux_o(ngrid),flux_g(ngrid)
[1297]	457	real :: flux_sens_lat(ngrid)
	458	real :: qsurfint(ngrid,nq)
[2019]	459	#ifdef MESOSCALE
	460	REAL :: lsf_dt(nlayer)
	461	REAL :: lsf_dq(nlayer)
	462	#endif
[1297]	463
[2663]	464	! flags to trigger extra sanity checks
	465	logical, save :: check_physics_inputs=.false.
	466	logical, save :: check_physics_outputs=.false.
	467	!$OPM THREADPRIVATE(check_physics_inputs,check_physics_outputs)
	468
[2133]	469	! Misc
	470	character*2 :: str2
[2736]	471	character(len=10) :: tmp1
	472	character(len=10) :: tmp2
[1477]	473	!==================================================================================================
[253]	474
	475	! -----------------
[1477]	476	! I. INITIALISATION
	477	! -----------------
[253]	478
[1477]	479	! --------------------------------
	480	! I.1 First Call Initialisation.
	481	! --------------------------------
[253]	482	if (firstcall) then
[2663]	483	call getin_p("check_physics_inputs", check_physics_inputs)
	484	call getin_p("check_physics_outputs", check_physics_outputs)
	485
[1883]	486	! Allocate saved arrays (except for 1D model, where this has already
	487	! been done)
[2010]	488	#ifndef MESOSCALE
[1883]	489	if (ngrid>1) call phys_state_var_init(nq)
[2010]	490	#endif
[858]	491
[1477]	492	! Variables set to 0
[253]	493	! ~~~~~~~~~~~~~~~~~~
	494	dtrad(:,:) = 0.0
	495	fluxrad(:) = 0.0
	496	tau_col(:) = 0.0
	497	zdtsw(:,:) = 0.0
	498	zdtlw(:,:) = 0.0
[726]	499
	500
[1477]	501	! Initialize aerosol indexes.
	502	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~
	503	call iniaerosol()
	504
[253]	505
[1477]	506	! Initialize tracer names, indexes and properties.
	507	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	508	IF (.NOT.ALLOCATED(noms)) ALLOCATE(noms(nq)) ! (because noms is an argument of physdem1 whether or not tracer is on)
[253]	509	if (tracer) then
[787]	510	call initracer(ngrid,nq,nametrac)
[1801]	511	if(photochem) then
	512	call ini_conc_mod(ngrid,nlayer)
[2542]	513	IF (.NOT.ALLOCATED(zdqchim)) ALLOCATE(zdqchim(ngrid,nlayer,nesp))
	514	IF (.NOT.ALLOCATED(zdqschim)) ALLOCATE(zdqschim(ngrid,nesp))
[1801]	515	endif
[1477]	516	endif
[253]	517
[1682]	518	#ifdef CPP_XIOS
	519	! Initialize XIOS context
	520	write(,) "physiq: call wxios_context_init"
	521	CALL wxios_context_init
	522	#endif
[726]	523
[1477]	524	! Read 'startfi.nc' file.
[253]	525	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1836]	526	#ifndef MESOSCALE
[1669]	527	call phyetat0(startphy_file, &
	528	ngrid,nlayer,"startfi.nc",0,0,nsoilmx,nq, &
[1477]	529	day_ini,time_phys,tsurf,tsoil,emis,q2,qsurf, &
	530	cloudfrac,totcloudfrac,hice, &
	531	rnat,pctsrf_sic,tslab, tsea_ice,sea_ice)
[1836]	532	#else
	533	emis(:)=0.0
	534	q2(:,:)=0.0
	535	qsurf(:,:)=0.0
	536	day_ini = pday
	537	#endif
	538
	539	#ifndef MESOSCALE
[1669]	540	if (.not.startphy_file) then
	541	! additionnal "academic" initialization of physics
	542	if (is_master) write(,) "Physiq: initializing tsurf(:) to pt(:,1) !!"
	543	tsurf(:)=pt(:,1)
	544	if (is_master) write(,) "Physiq: initializing tsoil(:) to pt(:,1) !!"
	545	do isoil=1,nsoilmx
	546	tsoil(1:ngrid,isoil)=tsurf(1:ngrid)
	547	enddo
	548	if (is_master) write(,) "Physiq: initializing day_ini to pdat !"
	549	day_ini=pday
	550	endif
[1836]	551	#endif
[253]	552	if (pday.ne.day_ini) then
[2299]	553	write(,) "ERROR in physiq.F90:"
	554	write(,) "bad synchronization between physics and dynamics"
	555	write(,) "dynamics day: ",pday
	556	write(,) "physics day: ",day_ini
	557	stop
[253]	558	endif
	559
	560	write (,) 'In physiq day_ini =', day_ini
	561
[1482]	562	! Initialize albedo calculation.
	563	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	564	albedo(:,:)=0.0
[1524]	565	albedo_bareground(:)=0.0
	566	albedo_snow_SPECTV(:)=0.0
	567	albedo_co2_ice_SPECTV(:)=0.0
[1482]	568	call surfini(ngrid,nq,qsurf,albedo,albedo_bareground,albedo_snow_SPECTV,albedo_co2_ice_SPECTV)
	569
	570	! Initialize orbital calculation.
	571	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	572	call iniorbit(apoastr,periastr,year_day,peri_day,obliquit)
	573
	574
	575	if(tlocked)then
	576	print*,'Planet is tidally locked at resonance n=',nres
	577	print*,'Make sure you have the right rotation rate!!!'
	578	endif
	579
[1477]	580	! Initialize oceanic variables.
	581	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	582
	583	if (ok_slab_ocean)then
	584
	585	call ocean_slab_init(ngrid,ptimestep, tslab, &
[1477]	586	sea_ice, pctsrf_sic)
[1297]	587
[1529]	588	call ini_surf_heat_transp_mod()
	589
[1477]	590	knindex(:) = 0
[1297]	591
[1477]	592	do ig=1,ngrid
[1297]	593	zmasq(ig)=1
	594	knindex(ig) = ig
	595	if (nint(rnat(ig)).eq.0) then
	596	zmasq(ig)=0
	597	endif
[1477]	598	enddo
[1297]	599
[1308]	600	CALL init_masquv(ngrid,zmasq)
[1297]	601
[1477]	602	endif ! end of 'ok_slab_ocean'.
[1297]	603
	604
[1477]	605	! Initialize soil.
	606	! ~~~~~~~~~~~~~~~~
[253]	607	if (callsoil) then
[1477]	608
[787]	609	call soil(ngrid,nsoilmx,firstcall,lastcall,inertiedat, &
[1477]	610	ptimestep,tsurf,tsoil,capcal,fluxgrd)
[1297]	611
	612	if (ok_slab_ocean) then
	613	do ig=1,ngrid
	614	if (nint(rnat(ig)).eq.2) then
[1477]	615	capcal(ig)=capcalocean
	616	if (pctsrf_sic(ig).gt.0.5) then
	617	capcal(ig)=capcalseaice
	618	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
	619	capcal(ig)=capcalsno
	620	endif
	621	endif
[1297]	622	endif
	623	enddo
[1477]	624	endif ! end of 'ok_slab_ocean'.
[1297]	625
[1477]	626	else ! else of 'callsoil'.
	627
[253]	628	print*,'WARNING! Thermal conduction in the soil turned off'
[918]	629	capcal(:)=1.e6
[952]	630	fluxgrd(:)=intheat
	631	print*,'Flux from ground = ',intheat,' W m^-2'
[1477]	632
	633	endif ! end of 'callsoil'.
	634
[253]	635	icount=1
	636
[1477]	637	! Decide whether to update ice at end of run.
	638	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	639	ice_update=.false.
	640	if(sourceevol)then
[1315]	641	!$OMP MASTER
[955]	642	open(128,file='num_run',form='formatted', &
	643	status="old",iostat=ierr)
	644	if (ierr.ne.0) then
[1477]	645	write(,) "physiq: Error! No num_run file!"
	646	write(,) " (which is needed for sourceevol option)"
	647	stop
[955]	648	endif
[253]	649	read(128,*) num_run
	650	close(128)
[1315]	651	!$OMP END MASTER
	652	!$OMP BARRIER
[253]	653
[365]	654	if(num_run.ne.0.and.mod(num_run,2).eq.0)then
[253]	655	print*,'Updating ice at end of this year!'
	656	ice_update=.true.
	657	ice_min(:)=1.e4
[1477]	658	endif
	659
	660	endif ! end of 'sourceevol'.
[253]	661
[1477]	662
	663	! Here is defined the type of the surface : Continent or Ocean.
	664	! BC2014 : This is now already done in newstart.
	665	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	666	if (.not.ok_slab_ocean) then
[1477]	667
[1297]	668	rnat(:)=1.
[2603]	669	if (.not.nosurf) then ! inertiedat only defined if there is a surface
	670	do ig=1,ngrid
[1477]	671	if(inertiedat(ig,1).gt.1.E4)then
	672	rnat(ig)=0
	673	endif
[2603]	674	enddo
[253]	675
[2603]	676	print*,'WARNING! Surface type currently decided by surface inertia'
	677	print*,'This should be improved e.g. in newstart.F'
	678	endif
[1477]	679	endif ! end of 'ok_slab_ocean'.
[253]	680
[1477]	681
	682	! Initialize surface history variable.
[253]	683	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[728]	684	qsurf_hist(:,:)=qsurf(:,:)
[253]	685
[1637]	686	! Initialize variable for dynamical heating and zonal wind tendency diagnostic
	687	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	688	ztprevious(:,:)=pt(:,:)
[1637]	689	zuprevious(:,:)=pu(:,:)
[253]	690
	691	! Set temperature just above condensation temperature (for Early Mars)
	692	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	693	if(nearco2cond) then
	694	write(,)' WARNING! Starting at Tcond+1K'
	695	do l=1, nlayer
	696	do ig=1,ngrid
	697	pdt(ig,l)= ((-3167.8)/(log(.01*pplay(ig,l))-23.23)+4 &
	698	-pt(ig,l)) / ptimestep
	699	enddo
	700	enddo
	701	endif
	702
[1477]	703	if(meanOLR)then
	704	call system('rm -f rad_bal.out') ! to record global radiative balance.
	705	call system('rm -f tem_bal.out') ! to record global mean/max/min temperatures.
	706	call system('rm -f h2o_bal.out') ! to record global hydrological balance.
[253]	707	endif
	708
	709
[1477]	710	watertest=.false.
	711	if(water)then ! Initialize variables for water cycle
	712
[365]	713	if(enertest)then
	714	watertest = .true.
	715	endif
	716
[728]	717	if(ice_update)then
	718	ice_initial(:)=qsurf(:,igcm_h2o_ice)
	719	endif
[253]	720
	721	endif
[2726]	722
	723	! Set metallicity for GCS
	724	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	725	metallicity=0.0 ! default value --- is not used here but necessary to call function Psat_generic
	726	call getin_p("metallicity",metallicity) ! --- is not used here but necessary to call function Psat_generic
[1477]	727
[2060]	728	! Set some parameters for the thermal plume model
	729	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	730	if (calltherm) then
[2176]	731	CALL init_thermcell_mod(g, rcp, r, pi, T_h2o_ice_liq, RV)
[2060]	732	endif
	733
[253]	734	call su_watercycle ! even if we don't have a water cycle, we might
	735	! need epsi for the wvp definitions in callcorrk.F
[2060]	736	! or RETV, RLvCp for the thermal plume model
[1836]	737	#ifndef MESOSCALE
[1477]	738	if (ngrid.ne.1) then ! Note : no need to create a restart file in 1d.
[1542]	739	call physdem0("restartfi.nc",longitude,latitude,nsoilmx,ngrid,nlayer,nq, &
[2299]	740	ptimestep,pday+nday,time_phys,cell_area, &
	741	albedo_bareground,inertiedat,zmea,zstd,zsig,zgam,zthe)
[1216]	742	endif
[1836]	743	#endif
[2736]	744	if (corrk) then
	745	! We initialise the spectral grid here instead of
	746	! at firstcall of callcorrk so we can output XspecIR, XspecVI
	747	! when using Dynamico
	748	print*, "physiq_mod: Correlated-k data base folder:",trim(datadir)
	749	call getin_p("corrkdir",corrkdir)
	750	print*,"corrkdir = ", corrkdir
	751	write (tmp1, '(i3)') L_NSPECTI
	752	write (tmp2, '(i3)') L_NSPECTV
	753	banddir=trim(trim(adjustl(tmp1))//'x'//trim(adjustl(tmp2)))
	754	banddir=trim(trim(adjustl(corrkdir))//'/'//trim(adjustl(banddir)))
	755	call setspi !Basic infrared properties.
	756	call setspv ! Basic visible properties.
	757	call sugas_corrk ! Set up gaseous absorption properties.
	758	call suaer_corrk ! Set up aerosol optical properties.
	759	endif
[1622]	760	! XIOS outputs
	761	#ifdef CPP_XIOS
	762
	763	write(,) "physiq: call initialize_xios_output"
	764	call initialize_xios_output(pday,ptime,ptimestep,daysec, &
[2736]	765	year_day,presnivs,pseudoalt,WNOI,WNOV)
[1622]	766	#endif
[1682]	767	write(,) "physiq: end of firstcall"
[1477]	768	endif ! end of 'firstcall'
[253]	769
[2663]	770	if (check_physics_inputs) then
	771	!check the validity of input fields coming from the dynamics
	772	call check_physics_fields("begin physiq:", pt, pu, pv, pplev, pq)
	773	endif
	774
[1477]	775	! ------------------------------------------------------
	776	! I.2 Initializations done at every physical timestep:
	777	! ------------------------------------------------------
	778
[1622]	779	#ifdef CPP_XIOS
	780	! update XIOS time/calendar
	781	call update_xios_timestep
	782	#endif
	783
[1477]	784	! Initialize various variables
	785	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1297]	786
[253]	787	if ( .not.nearco2cond ) then
[1308]	788	pdt(1:ngrid,1:nlayer) = 0.0
[1477]	789	endif
	790	zdtsurf(1:ngrid) = 0.0
[1308]	791	pdq(1:ngrid,1:nlayer,1:nq) = 0.0
[1477]	792	dqsurf(1:ngrid,1:nq)= 0.0
	793	pdu(1:ngrid,1:nlayer) = 0.0
	794	pdv(1:ngrid,1:nlayer) = 0.0
[787]	795	pdpsrf(1:ngrid) = 0.0
[1477]	796	zflubid(1:ngrid) = 0.0
[1297]	797	flux_sens_lat(1:ngrid) = 0.0
	798	taux(1:ngrid) = 0.0
	799	tauy(1:ngrid) = 0.0
[253]	800
[1477]	801	zday=pday+ptime ! Compute time, in sols (and fraction thereof).
[1297]	802
[1477]	803	! Compute Stellar Longitude (Ls), and orbital parameters.
	804	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	805	if (season) then
	806	call stellarlong(zday,zls)
	807	else
[2300]	808	call stellarlong(noseason_day,zls)
[253]	809	end if
	810
[1329]	811	call orbite(zls,dist_star,declin,right_ascen)
[1477]	812
[1329]	813	if (tlocked) then
	814	zlss=Mod(-(2.pi(zday/year_day)nres - right_ascen),2.pi)
	815	elseif (diurnal) then
[1524]	816	zlss=-2.pi(zday-.5)
[1329]	817	else if(diurnal .eqv. .false.) then
	818	zlss=9999.
	819	endif
[1194]	820
	821
[1477]	822	! Compute variations of g with latitude (oblate case).
	823	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	824	if (oblate .eqv. .false.) then
	825	glat(:) = g
	826	else if (flatten .eq. 0.0 .or. J2 .eq. 0.0 .or. Rmean .eq. 0.0 .or. MassPlanet .eq. 0.0) then
	827	print*,'I need values for flatten, J2, Rmean and MassPlanet to compute glat (else set oblate=.false.)'
	828	call abort
	829	else
	830	gmplanet = MassPlanetgrav1e24
	831	do ig=1,ngrid
[1542]	832	glat(ig)= gmplanet/(Rmean*2) (1.D0 + 0.75 J2 - 2.0flatten/3. + (2.flatten - 15./4. J2) * cos(2. * (pi/2. - latitude(ig))))
[1477]	833	end do
	834	endif
[1297]	835
[1477]	836	! Compute geopotential between layers.
	837	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1308]	838	zzlay(1:ngrid,1:nlayer)=pphi(1:ngrid,1:nlayer)
	839	do l=1,nlayer
[1477]	840	zzlay(1:ngrid,l)= zzlay(1:ngrid,l)/glat(1:ngrid)
[1194]	841	enddo
[728]	842
[787]	843	zzlev(1:ngrid,1)=0.
[1477]	844	zzlev(1:ngrid,nlayer+1)=1.e7 ! Dummy top of last layer above 10000 km...
[728]	845
[253]	846	do l=2,nlayer
	847	do ig=1,ngrid
	848	z1=(pplay(ig,l-1)+pplev(ig,l))/(pplay(ig,l-1)-pplev(ig,l))
	849	z2=(pplev(ig,l)+pplay(ig,l))/(pplev(ig,l)-pplay(ig,l))
	850	zzlev(ig,l)=(z1zzlay(ig,l-1)+z2zzlay(ig,l))/(z1+z2)
	851	enddo
[1477]	852	enddo
[253]	853
[1477]	854	! Compute potential temperature
	855	! Note : Potential temperature calculation may not be the same in physiq and dynamic...
	856	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[597]	857	do l=1,nlayer
[787]	858	do ig=1,ngrid
[253]	859	zpopsk(ig,l)=(pplay(ig,l)/pplev(ig,1))**rcp
[597]	860	zh(ig,l)=pt(ig,l)/zpopsk(ig,l)
[1194]	861	mass(ig,l) = (pplev(ig,l) - pplev(ig,l+1))/glat(ig)
[1542]	862	massarea(ig,l)=mass(ig,l)*cell_area(ig)
[253]	863	enddo
	864	enddo
	865
[1312]	866	! Compute vertical velocity (m/s) from vertical mass flux
[1346]	867	! w = F / (rhoarea) and rho = P/(rT)
[1477]	868	! But first linearly interpolate mass flux to mid-layers
	869	do l=1,nlayer-1
	870	pw(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
	871	enddo
	872	pw(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
	873	do l=1,nlayer
	874	pw(1:ngrid,l)=(pw(1:ngrid,l)rpt(1:ngrid,l)) / &
[1542]	875	(pplay(1:ngrid,l)*cell_area(1:ngrid))
[1477]	876	enddo
[1877]	877	! omega in Pa/s
	878	do l=1,nlayer-1
	879	omega(1:ngrid,l)=0.5*(flxw(1:ngrid,l)+flxw(1:ngrid,l+1))
	880	enddo
	881	omega(1:ngrid,nlayer)=0.5*flxw(1:ngrid,nlayer) ! since flxw(nlayer+1)=0
	882	do l=1,nlayer
	883	omega(1:ngrid,l)=g*omega(1:ngrid,l)/cell_area(1:ngrid)
	884	enddo
[1194]	885
[1801]	886	! ----------------------------------------------------------------
	887	! Compute mean mass, cp, and R
	888	! --------------------------------
[2058]	889	#ifndef MESOSCALE
[1801]	890	if(photochem) then
	891	call concentrations(ngrid,nlayer,nq,pplay,pt,pdt,pq,pdq,ptimestep)
	892	endif
[2058]	893	#endif
[1801]	894
[1477]	895	!---------------------------------
	896	! II. Compute radiative tendencies
	897	!---------------------------------
[253]	898
	899	if (callrad) then
[526]	900	if( mod(icount-1,iradia).eq.0.or.lastcall) then
[253]	901
[1477]	902	! Compute local stellar zenith angles
	903	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	904	if (tlocked) then
	905	! JL14 corrects tidally resonant (and inclined) cases. nres=omega_rot/omega_orb
	906	ztim1=SIN(declin)
	907	ztim2=COS(declin)*COS(zlss)
	908	ztim3=COS(declin)*SIN(zlss)
[253]	909
[1477]	910	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
	911	ztim1,ztim2,ztim3,mu0,fract, flatten)
[253]	912
[1477]	913	elseif (diurnal) then
	914	ztim1=SIN(declin)
	915	ztim2=COS(declin)COS(2.pi*(zday-.5))
	916	ztim3=-COS(declin)SIN(2.pi*(zday-.5))
[253]	917
[1477]	918	call stelang(ngrid,sinlon,coslon,sinlat,coslat, &
	919	ztim1,ztim2,ztim3,mu0,fract, flatten)
	920	else if(diurnal .eqv. .false.) then
[253]	921
[1542]	922	call mucorr(ngrid,declin,latitude,mu0,fract,10000.,rad,flatten)
[1161]	923	! WARNING: this function appears not to work in 1D
[253]	924
[2470]	925	if ((ngrid.eq.1).and.(global1d)) then ! Fixed zenith angle 'szangle' in 1D simulations w/ globally-averaged sunlight.
	926	mu0 = cos(pi*szangle/180.0)
	927	!print*,'acosz=',mu0,', szangle=',szangle
	928	endif
	929
[1477]	930	endif
[1161]	931
[1477]	932	! Eclipse incoming sunlight (e.g. Saturn ring shadowing).
[1429]	933	if(rings_shadow) then
	934	call call_rings(ngrid, ptime, pday, diurnal)
	935	endif
[1133]	936
[1329]	937
[1477]	938	if (corrk) then
	939
	940	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	941	! II.a Call correlated-k radiative transfer scheme
	942	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	943	if(kastprof)then
	944	print*,'kastprof should not = true here'
	945	call abort
	946	endif
[1524]	947	if(water) then
[1308]	948	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,1:nlayer,igcm_h2o_vap))
[1524]	949	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi-1.e0)*pq(1:ngrid,nlayer,igcm_h2o_vap))
	950	! take into account water effect on mean molecular weight
[2728]	951	elseif(generic_condensation) then
	952	do iq=1,nq
	953
	954	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
	955
	956	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
	957
	958	epsi_generic=constants_epsi_generic(iq)
	959
	960	muvar(1:ngrid,1:nlayer)=mugaz/(1.e0+(1.e0/epsi_generic-1.e0)*pq(1:ngrid,1:nlayer,igcm_generic_vap))
	961	muvar(1:ngrid,nlayer+1)=mugaz/(1.e0+(1.e0/epsi_generic-1.e0)*pq(1:ngrid,nlayer,igcm_generic_vap))
	962
	963	endif
	964	end do ! do iq=1,nq loop on tracers
	965	! take into account generic condensable specie (GCS) effect on mean molecular weight
	966
[1524]	967	else
[1308]	968	muvar(1:ngrid,1:nlayer+1)=mugaz
[1524]	969	endif
[538]	970
[1297]	971
[1477]	972	if(ok_slab_ocean) then
	973	tsurf2(:)=tsurf(:)
	974	do ig=1,ngrid
	975	if (nint(rnat(ig))==0) then
	976	tsurf(ig)=((1.-pctsrf_sic(ig))tslab(ig,1)4+pctsrf_sic(ig)tsea_ice(ig)4)0.25
	977	endif
	978	enddo
	979	endif !(ok_slab_ocean)
[1297]	980
[1477]	981	! standard callcorrk
	982	clearsky=.false.
[1482]	983	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
	984	albedo,albedo_equivalent,emis,mu0,pplev,pplay,pt, &
	985	tsurf,fract,dist_star,aerosol,muvar, &
	986	zdtlw,zdtsw,fluxsurf_lw,fluxsurf_sw, &
	987	fluxsurfabs_sw,fluxtop_lw, &
[2537]	988	fluxabs_sw,fluxtop_dn,OLR_nu,OSR_nu,GSR_nu, &
[2133]	989	int_dtaui,int_dtauv, &
[1482]	990	tau_col,cloudfrac,totcloudfrac, &
	991	clearsky,firstcall,lastcall)
[1297]	992
[1482]	993	! Option to call scheme once more for clear regions
[1477]	994	if(CLFvarying)then
[253]	995
[1477]	996	! ---> PROBLEMS WITH ALLOCATED ARRAYS : temporary solution in callcorrk: do not deallocate if CLFvarying ...
	997	clearsky=.true.
[1482]	998	call callcorrk(ngrid,nlayer,pq,nq,qsurf, &
[2537]	999	albedo,albedo_equivalent1,emis,mu0,pplev,pplay,pt, &
[1482]	1000	tsurf,fract,dist_star,aerosol,muvar, &
	1001	zdtlw1,zdtsw1,fluxsurf_lw1,fluxsurf_sw1, &
	1002	fluxsurfabs_sw1,fluxtop_lw1, &
[2537]	1003	fluxabs_sw1,fluxtop_dn,OLR_nu1,OSR_nu1,GSR_nu1, &
[2133]	1004	int_dtaui1,int_dtauv1, &
[1482]	1005	tau_col1,cloudfrac,totcloudfrac, &
[1477]	1006	clearsky,firstcall,lastcall)
	1007	clearsky = .false. ! just in case.
[253]	1008
[1477]	1009	! Sum the fluxes and heating rates from cloudy/clear cases
	1010	do ig=1,ngrid
	1011	tf=totcloudfrac(ig)
[1482]	1012	ntf=1.-tf
	1013	fluxsurf_lw(ig) = ntffluxsurf_lw1(ig) + tffluxsurf_lw(ig)
	1014	fluxsurf_sw(ig) = ntffluxsurf_sw1(ig) + tffluxsurf_sw(ig)
	1015	albedo_equivalent(ig) = ntfalbedo_equivalent1(ig) + tfalbedo_equivalent(ig)
	1016	fluxsurfabs_sw(ig) = ntffluxsurfabs_sw1(ig) + tffluxsurfabs_sw(ig)
	1017	fluxtop_lw(ig) = ntffluxtop_lw1(ig) + tffluxtop_lw(ig)
	1018	fluxabs_sw(ig) = ntffluxabs_sw1(ig) + tffluxabs_sw(ig)
	1019	tau_col(ig) = ntftau_col1(ig) + tftau_col(ig)
[253]	1020
[1477]	1021	zdtlw(ig,1:nlayer) = ntfzdtlw1(ig,1:nlayer) + tfzdtlw(ig,1:nlayer)
	1022	zdtsw(ig,1:nlayer) = ntfzdtsw1(ig,1:nlayer) + tfzdtsw(ig,1:nlayer)
[253]	1023
[2537]	1024	OSR_nu(ig,1:L_NSPECTV) = ntfOSR_nu1(ig,1:L_NSPECTV) + tfOSR_nu(ig,1:L_NSPECTV)
	1025	GSR_nu(ig,1:L_NSPECTV) = ntfGSR_nu1(ig,1:L_NSPECTV) + tfGSR_nu(ig,1:L_NSPECTV)
[1524]	1026	OLR_nu(ig,1:L_NSPECTI) = ntfOLR_nu1(ig,1:L_NSPECTI) + tfOLR_nu(ig,1:L_NSPECTI)
[2446]	1027	if (diagdtau) then
	1028	int_dtauv(ig,:,1:L_NSPECTV) = ntfint_dtauv1(ig,:,1:L_NSPECTV) + tfint_dtauv(ig,:,1:L_NSPECTV)
	1029	int_dtaui(ig,:,1:L_NSPECTI) = ntfint_dtaui1(ig,:,1:L_NSPECTI) + tfint_dtaui(ig,:,1:L_NSPECTI)
	1030	endif
[1482]	1031	enddo
[253]	1032
[1477]	1033	endif ! end of CLFvarying.
[253]	1034
[1477]	1035	if(ok_slab_ocean) then
	1036	tsurf(:)=tsurf2(:)
	1037	endif
[1297]	1038
	1039
[1482]	1040	! Radiative flux from the sky absorbed by the surface (W.m-2).
[1477]	1041	GSR=0.0
[1482]	1042	fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)+fluxsurfabs_sw(1:ngrid)
[253]	1043
[1477]	1044	!if(noradsurf)then ! no lower surface; SW flux just disappears
[1542]	1045	! GSR = SUM(fluxsurf_sw(1:ngrid)*cell_area(1:ngrid))/totarea
[1477]	1046	! fluxrad_sky(1:ngrid)=emis(1:ngrid)*fluxsurf_lw(1:ngrid)
	1047	! print*,'SW lost in deep atmosphere = ',GSR,' W m^-2'
	1048	!endif
[253]	1049
[1477]	1050	! Net atmospheric radiative heating rate (K.s-1)
	1051	dtrad(1:ngrid,1:nlayer)=zdtsw(1:ngrid,1:nlayer)+zdtlw(1:ngrid,1:nlayer)
[1498]	1052
	1053	! Late initialization of the Ice Spectral Albedo. We needed the visible bands to do that !
	1054	if (firstcall .and. albedo_spectral_mode) then
	1055	call spectral_albedo_calc(albedo_snow_SPECTV)
	1056	endif
[253]	1057
[1477]	1058	elseif(newtonian)then
[1482]	1059
	1060	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1061	! II.b Call Newtonian cooling scheme
	1062	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1477]	1063	call newtrelax(ngrid,nlayer,mu0,sinlat,zpopsk,pt,pplay,pplev,dtrad,firstcall)
[253]	1064
[1477]	1065	zdtsurf(1:ngrid) = +(pt(1:ngrid,1)-tsurf(1:ngrid))/ptimestep
	1066	! e.g. surface becomes proxy for 1st atmospheric layer ?
[253]	1067
[1477]	1068	else
	1069
	1070	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1071	! II.c Atmosphere has no radiative effect
	1072	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1073	fluxtop_dn(1:ngrid) = fract(1:ngrid)mu0(1:ngrid)Fat1AU/dist_star**2
	1074	if(ngrid.eq.1)then ! / by 4 globally in 1D case...
	1075	fluxtop_dn(1) = fract(1)Fat1AU/dist_star*2/2.0
	1076	endif
	1077	fluxsurf_sw(1:ngrid) = fluxtop_dn(1:ngrid)
[1482]	1078	print*,'------------WARNING---WARNING------------' ! by MT2015.
	1079	print*,'You are in corrk=false mode, '
[1498]	1080	print*,'and the surface albedo is taken equal to the first visible spectral value'
	1081
	1082	fluxsurfabs_sw(1:ngrid) = fluxtop_dn(1:ngrid)*(1.-albedo(1:ngrid,1))
	1083	fluxrad_sky(1:ngrid) = fluxsurfabs_sw(1:ngrid)
[1477]	1084	fluxtop_lw(1:ngrid) = emis(1:ngrid)sigmatsurf(1:ngrid)**4
[253]	1085
[1477]	1086	dtrad(1:ngrid,1:nlayer)=0.0 ! no atmospheric radiative heating
[253]	1087
[1477]	1088	endif ! end of corrk
[253]	1089
[1477]	1090	endif ! of if(mod(icount-1,iradia).eq.0)
[787]	1091
[253]	1092
[1477]	1093	! Transformation of the radiative tendencies
	1094	! ------------------------------------------
	1095	zplanck(1:ngrid)=tsurf(1:ngrid)*tsurf(1:ngrid)
	1096	zplanck(1:ngrid)=emis(1:ngrid)sigmazplanck(1:ngrid)*zplanck(1:ngrid)
	1097	fluxrad(1:ngrid)=fluxrad_sky(1:ngrid)-zplanck(1:ngrid)
	1098	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+dtrad(1:ngrid,1:nlayer)
	1099
	1100	! Test of energy conservation
	1101	!----------------------------
[253]	1102	if(enertest)then
[1524]	1103	call planetwide_sumval(cppmassarea(:,:)zdtsw(:,:)/totarea_planet,dEtotSW)
	1104	call planetwide_sumval(cppmassarea(:,:)zdtlw(:,:)/totarea_planet,dEtotLW)
[1542]	1105	!call planetwide_sumval(fluxsurf_sw(:)(1.-albedo_equivalent(:))cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
	1106	call planetwide_sumval(fluxsurfabs_sw(:)*cell_area(:)/totarea_planet,dEtotsSW) !JL13 carefull, albedo can have changed since the last time we called corrk
	1107	call planetwide_sumval((fluxsurf_lw(:)emis(:)-zplanck(:))cell_area(:)/totarea_planet,dEtotsLW)
[1524]	1108	dEzRadsw(:,:)=cppmass(:,:)zdtsw(:,:)
	1109	dEzRadlw(:,:)=cppmass(:,:)zdtlw(:,:)
	1110	if (is_master) then
[1477]	1111	print*,'---------------------------------------------------------------'
	1112	print*,'In corrk SW atmospheric heating =',dEtotSW,' W m-2'
	1113	print*,'In corrk LW atmospheric heating =',dEtotLW,' W m-2'
	1114	print*,'atmospheric net rad heating (SW+LW) =',dEtotLW+dEtotSW,' W m-2'
	1115	print*,'In corrk SW surface heating =',dEtotsSW,' W m-2'
	1116	print*,'In corrk LW surface heating =',dEtotsLW,' W m-2'
	1117	print*,'surface net rad heating (SW+LW) =',dEtotsLW+dEtotsSW,' W m-2'
[1524]	1118	endif
[1477]	1119	endif ! end of 'enertest'
[253]	1120
	1121	endif ! of if (callrad)
	1122
	1123
[1477]	1124
	1125	! --------------------------------------------
	1126	! III. Vertical diffusion (turbulent mixing) :
	1127	! --------------------------------------------
	1128
[253]	1129	if (calldifv) then
[526]	1130
[787]	1131	zflubid(1:ngrid)=fluxrad(1:ngrid)+fluxgrd(1:ngrid)
[253]	1132
[1477]	1133	! JL12 the following if test is temporarily there to allow us to compare the old vdifc with turbdiff.
[1524]	1134	if (UseTurbDiff) then
	1135
[1477]	1136	call turbdiff(ngrid,nlayer,nq,rnat, &
[2427]	1137	ptimestep,capcal, &
[1477]	1138	pplay,pplev,zzlay,zzlev,z0, &
	1139	pu,pv,pt,zpopsk,pq,tsurf,emis,qsurf, &
	1140	pdt,pdq,zflubid, &
	1141	zdudif,zdvdif,zdtdif,zdtsdif, &
[1524]	1142	sensibFlux,q2,zdqdif,zdqevap,zdqsdif, &
[2427]	1143	taux,tauy)
[594]	1144
[1524]	1145	else
	1146
[1477]	1147	zdh(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
[594]	1148
[1477]	1149	call vdifc(ngrid,nlayer,nq,rnat,zpopsk, &
	1150	ptimestep,capcal,lwrite, &
	1151	pplay,pplev,zzlay,zzlev,z0, &
	1152	pu,pv,zh,pq,tsurf,emis,qsurf, &
	1153	zdh,pdq,zflubid, &
	1154	zdudif,zdvdif,zdhdif,zdtsdif, &
[2427]	1155	sensibFlux,q2,zdqdif,zdqsdif)
[253]	1156
[1477]	1157	zdtdif(1:ngrid,1:nlayer)=zdhdif(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
[1524]	1158	zdqevap(1:ngrid,1:nlayer)=0.
[594]	1159
[1477]	1160	end if !end of 'UseTurbDiff'
[594]	1161
[2121]	1162	zdtsurf(1:ngrid)=zdtsurf(1:ngrid)+zdtsdif(1:ngrid)
	1163
[1836]	1164	!!! this is always done, except for turbulence-resolving simulations
	1165	if (.not. turb_resolved) then
	1166	pdv(1:ngrid,1:nlayer)=pdv(1:ngrid,1:nlayer)+zdvdif(1:ngrid,1:nlayer)
	1167	pdu(1:ngrid,1:nlayer)=pdu(1:ngrid,1:nlayer)+zdudif(1:ngrid,1:nlayer)
	1168	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtdif(1:ngrid,1:nlayer)
	1169	endif
[1477]	1170
[1297]	1171	if(ok_slab_ocean)then
	1172	flux_sens_lat(1:ngrid)=(zdtsdif(1:ngrid)*capcal(1:ngrid)-fluxrad(1:ngrid))
	1173	endif
	1174
	1175
[253]	1176	if (tracer) then
[1308]	1177	pdq(1:ngrid,1:nlayer,1:nq)=pdq(1:ngrid,1:nlayer,1:nq)+ zdqdif(1:ngrid,1:nlayer,1:nq)
[787]	1178	dqsurf(1:ngrid,1:nq)=dqsurf(1:ngrid,1:nq) + zdqsdif(1:ngrid,1:nq)
[253]	1179	end if ! of if (tracer)
	1180
[1477]	1181
	1182	! test energy conservation
[253]	1183	!-------------------------
	1184	if(enertest)then
[1477]	1185
[1524]	1186	dEzdiff(:,:)=cppmass(:,:)zdtdif(:,:)
[253]	1187	do ig = 1, ngrid
[1524]	1188	dEdiff(ig)=SUM(dEzdiff (ig,:))+ sensibFlux(ig)! subtract flux to the ground
	1189	dEzdiff(ig,1)= dEzdiff(ig,1)+ sensibFlux(ig)! subtract flux to the ground
[253]	1190	enddo
[1477]	1191
[1542]	1192	call planetwide_sumval(dEdiff(:)*cell_area(:)/totarea_planet,dEtot)
[1524]	1193	dEdiffs(:)=capcal(:)*zdtsdif(:)-zflubid(:)-sensibFlux(:)
[1542]	1194	call planetwide_sumval(dEdiffs(:)*cell_area(:)/totarea_planet,dEtots)
	1195	call planetwide_sumval(sensibFlux(:)*cell_area(:)/totarea_planet,AtmToSurf_TurbFlux)
[1477]	1196
[1524]	1197	if (is_master) then
[1477]	1198
	1199	if (UseTurbDiff) then
[1524]	1200	print*,'In TurbDiff sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
	1201	print*,'In TurbDiff non-cons atm nrj change =',dEtot,' W m-2'
[1477]	1202	print*,'In TurbDiff (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
[1524]	1203	else
	1204	print*,'In vdifc sensible flux (atm=>surf) =',AtmToSurf_TurbFlux,' W m-2'
	1205	print*,'In vdifc non-cons atm nrj change =',dEtot,' W m-2'
	1206	print*,'In vdifc (correc rad+latent heat) surf nrj change =',dEtots,' W m-2'
	1207	end if
	1208	endif ! end of 'is_master'
[1477]	1209
	1210	! JL12 : note that the black body radiative flux emitted by the surface has been updated by the implicit scheme but not given back elsewhere.
	1211	endif ! end of 'enertest'
[253]	1212
[1477]	1213
	1214	! Test water conservation.
[253]	1215	if(watertest.and.water)then
[1477]	1216
[1524]	1217	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
[1542]	1218	call planetwide_sumval(zdqsdif(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots_tmp)
[253]	1219	do ig = 1, ngrid
[1524]	1220	vdifcncons(ig)=SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_vap))
	1221	enddo
	1222	call planetwide_sumval(massarea(:,:)zdqdif(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
[1542]	1223	call planetwide_sumval(zdqsdif(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1224	dWtot = dWtot + dWtot_tmp
	1225	dWtots = dWtots + dWtots_tmp
[651]	1226	do ig = 1, ngrid
[1524]	1227	vdifcncons(ig)=vdifcncons(ig) + SUM(mass(ig,:)*zdqdif(ig,:,igcm_h2o_ice))
	1228	enddo
	1229	call planetwide_maxval(vdifcncons(:),nconsMAX)
[253]	1230
[1524]	1231	if (is_master) then
[1477]	1232	print*,'---------------------------------------------------------------'
	1233	print*,'In difv atmospheric water change =',dWtot,' kg m-2'
	1234	print*,'In difv surface water change =',dWtots,' kg m-2'
	1235	print*,'In difv non-cons factor =',dWtot+dWtots,' kg m-2'
	1236	print*,'In difv MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
[1524]	1237	endif
[253]	1238
[1477]	1239	endif ! end of 'watertest'
[253]	1240	!-------------------------
	1241
[1477]	1242	else ! calldifv
[253]	1243
	1244	if(.not.newtonian)then
	1245
[787]	1246	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + (fluxrad(1:ngrid) + fluxgrd(1:ngrid))/capcal(1:ngrid)
[253]	1247
	1248	endif
	1249
[1477]	1250	endif ! end of 'calldifv'
[253]	1251
	1252
[2060]	1253	!-------------------
	1254	! IV. Convection :
	1255	!-------------------
	1256
	1257	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
	1258	! IV.a Thermal plume model :
	1259	! ~~~~~~~~~~~~~~~~~~~~~~~~~~
	1260
	1261	IF (calltherm) THEN
[2127]	1262
	1263	! AB: We need to evaporate ice before calling thermcell_main.
[2105]	1264	IF (water) THEN
	1265	CALL evap(ngrid,nlayer,nq,ptimestep,pt,pq,pdq,pdt,dqevap,dtevap,zqtherm,zttherm)
	1266	ELSE
[2114]	1267	zttherm(:,:) = pt(:,:) + pdt(:,:) * ptimestep
	1268	zqtherm(:,:,:) = pq(:,:,:) + pdq(:,:,:) * ptimestep
[2105]	1269	ENDIF
	1270
[2127]	1271	CALL thermcell_main(ngrid, nlayer, nq, ptimestep, firstcall, &
	1272	pplay, pplev, pphi, zpopsk, &
	1273	pu, pv, zttherm, zqtherm, &
	1274	zdutherm, zdvtherm, zdttherm, zdqtherm, &
[2232]	1275	fm, entr, detr, zw2, fraca)
[2060]	1276
	1277	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdutherm(1:ngrid,1:nlayer)
	1278	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvtherm(1:ngrid,1:nlayer)
	1279	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdttherm(1:ngrid,1:nlayer)
	1280
[2127]	1281	IF (tracer) THEN
	1282	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqtherm(1:ngrid,1:nlayer,1:nq)
[2060]	1283	ENDIF
	1284
	1285	ENDIF ! end of 'calltherm'
	1286
	1287	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1288	! IV.b Dry convective adjustment :
	1289	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[253]	1290
	1291	if(calladj) then
	1292
[1308]	1293	zdh(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)/zpopsk(1:ngrid,1:nlayer)
	1294	zduadj(1:ngrid,1:nlayer)=0.0
	1295	zdvadj(1:ngrid,1:nlayer)=0.0
	1296	zdhadj(1:ngrid,1:nlayer)=0.0
[253]	1297
	1298
[1477]	1299	call convadj(ngrid,nlayer,nq,ptimestep, &
	1300	pplay,pplev,zpopsk, &
	1301	pu,pv,zh,pq, &
	1302	pdu,pdv,zdh,pdq, &
	1303	zduadj,zdvadj,zdhadj, &
[2232]	1304	zdqadj)
[253]	1305
[1308]	1306	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zduadj(1:ngrid,1:nlayer)
	1307	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvadj(1:ngrid,1:nlayer)
	1308	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer)
	1309	zdtadj(1:ngrid,1:nlayer) = zdhadj(1:ngrid,1:nlayer)*zpopsk(1:ngrid,1:nlayer) ! for diagnostic only
[1283]	1310
[253]	1311	if(tracer) then
[1308]	1312	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqadj(1:ngrid,1:nlayer,1:nq)
[253]	1313	end if
	1314
[1477]	1315	! Test energy conservation
[253]	1316	if(enertest)then
[1524]	1317	call planetwide_sumval(cppmassarea(:,:)zdtadj(:,:)/totarea_planet,dEtot)
[1295]	1318	if (is_master) print*,'In convadj atmospheric energy change =',dEtot,' W m-2'
[253]	1319	endif
	1320
[1477]	1321	! Test water conservation
[253]	1322	if(watertest)then
[1524]	1323	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dWtot_tmp)
[253]	1324	do ig = 1, ngrid
[1524]	1325	cadjncons(ig)=SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_vap))
	1326	enddo
	1327	call planetwide_sumval(massarea(:,:)zdqadj(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
	1328	dWtot = dWtot + dWtot_tmp
[651]	1329	do ig = 1, ngrid
[1524]	1330	cadjncons(ig)=cadjncons(ig) + SUM(mass(ig,:)*zdqadj(ig,:,igcm_h2o_ice))
	1331	enddo
	1332	call planetwide_maxval(cadjncons(:),nconsMAX)
[253]	1333
[1295]	1334	if (is_master) then
[1524]	1335	print*,'In convadj atmospheric water change =',dWtot,' kg m-2'
[1477]	1336	print*,'In convadj MAX non-cons factor =',nconsMAX,' kg m-2 s-1'
[1524]	1337	endif
[1477]	1338
	1339	endif ! end of 'watertest'
[787]	1340
[1477]	1341	endif ! end of 'calladj'
[2299]	1342	!----------------------------------------------
	1343	! Non orographic Gravity Waves:
	1344	!---------------------------------------------
	1345	IF (calllott_nonoro) THEN
	1346
[2595]	1347	CALL nonoro_gwd_ran(ngrid,nlayer,ptimestep, &
	1348	cpnew, rnew, &
	1349	pplay, &
[2299]	1350	zmax_th, &! max altitude reached by thermals (m)
	1351	pt, pu, pv, &
	1352	pdt, pdu, pdv, &
	1353	zustrhi,zvstrhi, &
	1354	d_t_hin, d_u_hin, d_v_hin)
	1355
	1356	! Update tendencies
	1357	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) &
	1358	+ d_t_hin(1:ngrid,1:nlayer)
	1359	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) &
	1360	+ d_u_hin(1:ngrid,1:nlayer)
	1361	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) &
	1362	+ d_v_hin(1:ngrid,1:nlayer)
	1363	print*,'du_nonoro: max ', maxval(d_u_hin), 'min ', minval(d_u_hin)
	1364	print*,'dv_nonoro: max ', maxval(d_v_hin), 'min ', minval(d_v_hin)
	1365
	1366	ENDIF ! of IF (calllott_nonoro)
	1367
	1368
[2060]	1369
[1477]	1370	!-----------------------------------------------
	1371	! V. Carbon dioxide condensation-sublimation :
	1372	!-----------------------------------------------
[253]	1373
	1374	if (co2cond) then
[1477]	1375
[253]	1376	if (.not.tracer) then
	1377	print*,'We need a CO2 ice tracer to condense CO2'
	1378	call abort
	1379	endif
[1477]	1380	call condense_co2(ngrid,nlayer,nq,ptimestep, &
	1381	capcal,pplay,pplev,tsurf,pt, &
[1485]	1382	pdt,zdtsurf,pq,pdq, &
	1383	qsurf,zdqsurfc,albedo,emis, &
[1482]	1384	albedo_bareground,albedo_co2_ice_SPECTV, &
[1485]	1385	zdtc,zdtsurfc,pdpsrf,zdqc)
[253]	1386
[1484]	1387	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtc(1:ngrid,1:nlayer)
	1388	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfc(1:ngrid)
[728]	1389
[1484]	1390	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+ zdqc(1:ngrid,1:nlayer,1:nq)
	1391	dqsurf(1:ngrid,igcm_co2_ice) = dqsurf(1:ngrid,igcm_co2_ice) + zdqsurfc(1:ngrid)
[253]	1392
	1393	! test energy conservation
	1394	if(enertest)then
[1524]	1395	call planetwide_sumval(cppmassarea(:,:)zdtc(:,:)/totarea_planet,dEtot)
[1542]	1396	call planetwide_sumval(capcal(:)zdtsurfc(:)cell_area(:)/totarea_planet,dEtots)
[1524]	1397	if (is_master) then
	1398	print*,'In co2cloud atmospheric energy change =',dEtot,' W m-2'
[1477]	1399	print*,'In co2cloud surface energy change =',dEtots,' W m-2'
[1524]	1400	endif
[253]	1401	endif
	1402
[1477]	1403	endif ! end of 'co2cond'
[253]	1404
	1405
[1477]	1406	!---------------------------------------------
	1407	! VI. Specific parameterizations for tracers
	1408	!---------------------------------------------
[253]	1409
[1477]	1410	if (tracer) then
	1411
	1412	! ---------------------
	1413	! VI.1. Water and ice
	1414	! ---------------------
[253]	1415	if (water) then
[2105]	1416
[1477]	1417	! Water ice condensation in the atmosphere
[728]	1418	if(watercond.and.(RLVTT.gt.1.e-8))then
[1477]	1419
[2105]	1420	if (.not.calltherm) then
	1421	dqmoist(1:ngrid,1:nlayer,1:nq)=0.
	1422	dtmoist(1:ngrid,1:nlayer)=0.
[1477]	1423
[2105]	1424	! Moist Convective Adjustment.
	1425	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
	1426	call moistadj(ngrid,nlayer,nq,pt,pq,pdq,pplev,pplay,dtmoist,dqmoist,ptimestep,rneb_man)
[1524]	1427
[2105]	1428	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
	1429	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap)
	1430	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
	1431	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_ice)
	1432	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtmoist(1:ngrid,1:nlayer)
	1433
	1434	! Test energy conservation.
	1435	if(enertest)then
	1436	call planetwide_sumval(cppmassarea(:,:)dtmoist(:,:)/totarea_planet,dEtot)
	1437	call planetwide_maxval(dtmoist(:,:),dtmoist_max)
	1438	call planetwide_minval(dtmoist(:,:),dtmoist_min)
	1439	madjdEz(:,:)=cppmass(:,:)dtmoist(:,:)
	1440
	1441	do ig=1,ngrid
	1442	madjdE(ig) = cppSUM(mass(:,:)dtmoist(:,:))
	1443	enddo
	1444
	1445	if (is_master) then
	1446	print*,'In moistadj atmospheric energy change =',dEtot,' W m-2'
	1447	print,'In moistadj MAX atmospheric energy change =',dtmoist_maxptimestep,'K/step'
	1448	print,'In moistadj MIN atmospheric energy change =',dtmoist_minptimestep,'K/step'
	1449	endif
	1450
	1451	call planetwide_sumval(massarea(:,:)dqmoist(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
	1452	massarea(:,:)dqmoist(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
	1453	if (is_master) print*,'In moistadj atmospheric water change =',dWtot,' kg m-2'
	1454
	1455	endif ! end of 'enertest'
[2176]	1456	endif ! end of '.not.calltherm'
[2105]	1457
[1477]	1458	! Large scale condensation/evaporation.
	1459	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1308]	1460	call largescale(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pq,pdt,pdq,dtlscale,dqvaplscale,dqcldlscale,rneb_lsc)
[253]	1461
[1308]	1462	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtlscale(1:ngrid,1:nlayer)
	1463	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap)+dqvaplscale(1:ngrid,1:nlayer)
	1464	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice)+dqcldlscale(1:ngrid,1:nlayer)
[253]	1465
[1477]	1466	! Test energy conservation.
[253]	1467	if(enertest)then
[1016]	1468	lscaledEz(:,:) = cppmass(:,:)dtlscale(:,:)
[787]	1469	do ig=1,ngrid
[728]	1470	lscaledE(ig) = cppSUM(mass(:,:)dtlscale(:,:))
[253]	1471	enddo
[1524]	1472	call planetwide_sumval(cppmassarea(:,:)dtlscale(:,:)/totarea_planet,dEtot)
[1477]	1473
[1524]	1474	if (is_master) print*,'In largescale atmospheric energy change =',dEtot,' W m-2'
[728]	1475
[1477]	1476	! Test water conservation.
[1524]	1477	call planetwide_sumval(massarea(:,:)dqvaplscale(:,:)ptimestep/totarea_planet+ &
	1478	SUM(massarea(:,:)dqcldlscale(:,:))ptimestep/totarea_planet,dWtot)
[1477]	1479
[1524]	1480	if (is_master) print*,'In largescale atmospheric water change =',dWtot,' kg m-2'
[1477]	1481	endif ! end of 'enertest'
[253]	1482
[1477]	1483	! Compute cloud fraction.
[253]	1484	do l = 1, nlayer
[787]	1485	do ig=1,ngrid
[253]	1486	cloudfrac(ig,l)=MAX(rneb_lsc(ig,l),rneb_man(ig,l))
	1487	enddo
	1488	enddo
	1489
[1477]	1490	endif ! end of 'watercond'
[253]	1491
[1477]	1492	! Water ice / liquid precipitation.
	1493	! ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[1989]	1494	zdqrain(1:ngrid,1:nlayer,1:nq) = 0.0 !JL18 need to do that everytimestep if mass redis is on.
	1495
[728]	1496	if(waterrain)then
[253]	1497
[787]	1498	zdqsrain(1:ngrid) = 0.0
	1499	zdqssnow(1:ngrid) = 0.0
[253]	1500
[1309]	1501	call rain(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pdt,pq,pdq, &
[1859]	1502	zdtrain,zdqrain,zdqsrain,zdqssnow,reevap_precip,cloudfrac)
[253]	1503
[1308]	1504	pdq(1:ngrid,1:nlayer,igcm_h2o_vap) = pdq(1:ngrid,1:nlayer,igcm_h2o_vap) &
[1524]	1505	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
[1308]	1506	pdq(1:ngrid,1:nlayer,igcm_h2o_ice) = pdq(1:ngrid,1:nlayer,igcm_h2o_ice) &
[1524]	1507	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
[1308]	1508	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain(1:ngrid,1:nlayer)
[1477]	1509
	1510	dqsurf(1:ngrid,igcm_h2o_vap) = dqsurf(1:ngrid,igcm_h2o_vap)+zdqsrain(1:ngrid)
	1511	dqsurf(1:ngrid,igcm_h2o_ice) = dqsurf(1:ngrid,igcm_h2o_ice)+zdqssnow(1:ngrid)
[253]	1512
[1477]	1513	! Test energy conservation.
[651]	1514	if(enertest)then
[1477]	1515
[1524]	1516	call planetwide_sumval(cppmassarea(:,:)zdtrain(:,:)/totarea_planet,dEtot)
	1517	if (is_master) print*,'In rain atmospheric T energy change =',dEtot,' W m-2'
	1518	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
[1542]	1519	call planetwide_sumval(cell_area(:)zdqssnow(:)/totarea_planetRLVTT/cpp,dItot)
[1524]	1520	dItot = dItot + dItot_tmp
	1521	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet,dVtot_tmp)
[1542]	1522	call planetwide_sumval(cell_area(:)zdqsrain(:)/totarea_planetRLVTT/cpp,dVtot)
[1524]	1523	dVtot = dVtot + dVtot_tmp
	1524	dEtot = dItot + dVtot
[1477]	1525
[1524]	1526	if (is_master) then
[1477]	1527	print*,'In rain dItot =',dItot,' W m-2'
	1528	print*,'In rain dVtot =',dVtot,' W m-2'
	1529	print*,'In rain atmospheric L energy change =',dEtot,' W m-2'
[1524]	1530	endif
[253]	1531
[1477]	1532	! Test water conservation
[1524]	1533	call planetwide_sumval(massarea(:,:)zdqrain(:,:,igcm_h2o_vap)ptimestep/totarea_planet+ &
	1534	massarea(:,:)zdqrain(:,:,igcm_h2o_ice)ptimestep/totarea_planet,dWtot)
[1542]	1535	call planetwide_sumval((zdqsrain(:)+zdqssnow(:))cell_area(:)ptimestep/totarea_planet,dWtots)
[1477]	1536
[1524]	1537	if (is_master) then
	1538	print*,'In rain atmospheric water change =',dWtot,' kg m-2'
	1539	print*,'In rain surface water change =',dWtots,' kg m-2'
	1540	print*,'In rain non-cons factor =',dWtot+dWtots,' kg m-2'
	1541	endif
[1477]	1542
	1543	endif ! end of 'enertest'
[253]	1544
[1477]	1545	end if ! enf of 'waterrain'
	1546
	1547	end if ! end of 'water'
[253]	1548
[1801]	1549	! -------------------------
	1550	! VI.2. Photochemistry
[1477]	1551	! -------------------------
[1801]	1552
[2058]	1553	#ifndef MESOSCALE
[1801]	1554	IF (photochem) then
	1555
	1556	DO ig=1,ngrid
	1557	array_zero1(ig)=0.0
	1558	DO l=1,nlayer
	1559	array_zero2(ig,l)=0.
	1560	ENDDO
	1561	ENDDO
	1562
	1563	call calchim_asis(ngrid,nlayer,nq, &
	1564	ptimestep,pplay,pplev,pt,pdt,dist_star,mu0, &
	1565	fract,zzlev,zzlay,zday,pq,pdq,zdqchim,zdqschim, &
	1566	array_zero1,array_zero1, &
[2542]	1567	pu,pdu,pv,pdv,array_zero2,array_zero2,icount,zdtchim)
[1801]	1568
	1569	! increment values of tracers:
[2542]	1570	iesp = 0
	1571	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
	1572	! tracers is zero anyways
	1573	! September 2020: flag is_chim to increment only on chemical species
	1574	IF (is_chim(iq)==1) THEN
	1575	iesp = iesp + 1
	1576	DO l=1,nlayer
	1577	DO ig=1,ngrid
	1578	pdq(ig,l,iq)=pdq(ig,l,iq)+zdqchim(ig,l,iesp)
	1579	ENDDO
[1801]	1580	ENDDO
[2542]	1581	ENDIF
[1801]	1582	ENDDO ! of DO iq=1,nq
	1583
	1584
	1585	! increment surface values of tracers:
	1586	DO iq=1,nq ! loop on all tracers; tendencies for non-chemistry
	1587	! tracers is zero anyways
	1588	DO ig=1,ngrid
	1589	! dqsurf(ig,iq)=dqsurf(ig,iq)+zdqschim(ig,iq)
	1590	ENDDO
	1591	ENDDO ! of DO iq=1,nq
	1592
[2542]	1593	! increment values of temperature:
	1594	pdt(1:ngrid,1:nlayer)=pdt(1:ngrid,1:nlayer)+zdtchim(1:ngrid,1:nlayer)
	1595
[1801]	1596	END IF ! of IF (photochem)
[2058]	1597	#endif
[1801]	1598
	1599
[1477]	1600	! -------------------------
[1801]	1601	! VI.3. Aerosol particles
	1602	! -------------------------
[2701]	1603
[2700]	1604	!Generic Condensation
	1605	if (generic_condensation) then
[2701]	1606	call condensation_generic(ngrid,nlayer,nq,ptimestep,pplev,pplay, &
[2700]	1607	pt,pq,pdt,pdq,dtlscale_generic, &
[2724]	1608	dqvaplscale_generic,dqcldlscale_generic,rneb_generic)
[2700]	1609	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+dtlscale_generic(1:ngrid,1:nlayer)
	1610	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+dqvaplscale_generic(1:ngrid,1:nlayer,1:nq)
	1611	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq)+dqcldlscale_generic(1:ngrid,1:nlayer,1:nq)
[2714]	1612
	1613	if(enertest)then
	1614	do ig=1,ngrid
	1615	genericconddE(ig) = cppSUM(mass(:,:)dtlscale_generic(:,:))
	1616	enddo
	1617
	1618	call planetwide_sumval(cppmassarea(:,:)dtlscale_generic(:,:)/totarea_planet,dEtot)
	1619
	1620	if (is_master) print*,'In generic condensation atmospheric energy change =',dEtot,' W m-2'
	1621	end if
[2724]	1622
[2726]	1623	if (.not. water) then
	1624	! Compute GCS (Generic Condensable Specie) cloud fraction. For now we can not have both water cloud fraction and GCS cloud fraction
	1625	! Water is the priority
	1626	! If you have set water and generic_condensation, then cloudfrac will be water cloudfrac
	1627	!
	1628	! If you have set generic_condensation (and not water) and you have set several GCS
	1629	! then cloudfrac will be only the cloudfrac of the last generic tracer
	1630	! (Because it is rewritten every tracer in the loop)
	1631	!
	1632	! Maybe one should create a cloudfrac_generic(ngrid,nlayer,nq) with 3 dimensions, the last one for tracers
[2724]	1633
	1634	! Let's loop on tracers
	1635	do iq=1,nq
	1636
	1637	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
	1638
	1639	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
	1640	do l = 1, nlayer
	1641	do ig=1,ngrid
	1642	cloudfrac(ig,l)=MAX(rneb_generic(ig,l,iq),rneb_man(ig,l))
	1643	enddo
	1644	enddo
	1645	endif
	1646	end do ! do iq=1,nq loop on tracers
	1647	endif ! .not. water
	1648
[2700]	1649	endif !generic_condensation
[253]	1650
[2721]	1651	!Generic Rain
	1652
	1653	if (generic_rain) then
	1654
	1655	zdqsrain_generic(1:ngrid,1:nq) = 0.0
	1656	zdqssnow_generic(1:ngrid,1:nq) = 0.0
	1657
	1658	call rain_generic(ngrid,nlayer,nq,ptimestep,pplev,pplay,pt,pdt,pq,pdq, &
	1659	zdtrain_generic,dq_rain_generic_vap,dq_rain_generic_cld, &
	1660	zdqsrain_generic,zdqssnow_generic,reevap_precip_generic,cloudfrac)
	1661
	1662	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
	1663	+ dq_rain_generic_vap(1:ngrid,1:nlayer,1:nq)
	1664	! only the parts with indexes of generic vapor tracers are filled in dq_rain_generic_vap, other parts are 0.
	1665	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) &
	1666	+ dq_rain_generic_cld(1:ngrid,1:nlayer,1:nq)
	1667	! only the parts with indexes of generic ice(cloud) tracers are filled in dq_rain_generic_cld, other parts are 0.
	1668
	1669	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer)+zdtrain_generic(1:ngrid,1:nlayer)
	1670
	1671	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq)+zdqsrain_generic(1:ngrid,1:nq)
	1672
	1673	! Test energy conservation.
	1674	if(enertest)then
	1675
	1676	call planetwide_sumval(cppmassarea(:,:)zdtrain_generic(:,:)/totarea_planet,dEtot)
	1677	if (is_master) print*,'In rain_generic atmospheric T energy change =',dEtot,' W m-2'
	1678
	1679	! Test conservationfor each generic condensable specie (GCS) tracer
	1680
	1681	! Let's loop on tracers
	1682
	1683	do iq=1,nq
	1684
[2722]	1685	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
[2721]	1686
[2722]	1687	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
[2721]	1688
	1689	call planetwide_sumval(massarea(:,:)dq_rain_generic_cld(:,:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dItot_tmp)
	1690	call planetwide_sumval(cell_area(:)zdqssnow_generic(:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dItot)
	1691	dItot = dItot + dItot_tmp
	1692	call planetwide_sumval(massarea(:,:)dq_rain_generic_vap(:,:,igcm_generic_vap)ptimestep/totarea_planet,dVtot_tmp)
	1693	call planetwide_sumval(cell_area(:)zdqsrain_generic(:,igcm_generic_ice)/totarea_planetRLVTT/cpp,dVtot)
	1694	dVtot = dVtot + dVtot_tmp
	1695	dEtot = dItot + dVtot
	1696
	1697	if (is_master) then
	1698	print*,'In rain_generic dItot =',dItot,' W m-2'
	1699	print*,'In rain_generic dVtot =',dVtot,' W m-2'
	1700	print*,'In rain_generic atmospheric L energy change =',dEtot,' W m-2'
	1701	endif
	1702
	1703	call planetwide_sumval(massarea(:,:)dq_rain_generic_vap(:,:,igcm_generic_vap)ptimestep/totarea_planet+ &
	1704	massarea(:,:)dq_rain_generic_cld(:,:,igcm_generic_ice)ptimestep/totarea_planet,dWtot)
	1705	call planetwide_sumval((zdqsrain_generic(:,igcm_generic_ice)+zdqssnow_generic(:,igcm_generic_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
	1706
	1707	if (is_master) then
	1708	print*,'In rain_generic atmospheric generic tracer change =',dWtot,' kg m-2'
	1709	print*,'In rain_generic surface generic tracer change =',dWtots,' kg m-2'
	1710	print*,'In rain_generic non-cons factor =',dWtot+dWtots,' kg m-2'
	1711	endif
	1712
	1713	endif
	1714
	1715	end do ! do iq=1,nq loop on tracers
	1716
	1717	endif ! end of 'enertest'
	1718
	1719	endif !generic_rain
	1720
[1477]	1721	! Sedimentation.
	1722	if (sedimentation) then
	1723
	1724	zdqsed(1:ngrid,1:nlayer,1:nq) = 0.0
	1725	zdqssed(1:ngrid,1:nq) = 0.0
[253]	1726
[1477]	1727	if(watertest)then
	1728
	1729	iq=igcm_h2o_ice
[1524]	1730	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
	1731	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
	1732	if (is_master) then
	1733	print*,'Before sedim pq =',dWtot,' kg m-2'
[1477]	1734	print*,'Before sedim pdq =',dWtots,' kg m-2'
[1524]	1735	endif
[1477]	1736	endif
	1737
	1738	call callsedim(ngrid,nlayer,ptimestep, &
	1739	pplev,zzlev,pt,pdt,pq,pdq, &
	1740	zdqsed,zdqssed,nq)
[253]	1741
[1477]	1742	if(watertest)then
	1743	iq=igcm_h2o_ice
[1524]	1744	call planetwide_sumval(massarea(:,:)pq(:,:,iq)ptimestep/totarea_planet,dWtot)
	1745	call planetwide_sumval(massarea(:,:)pdq(:,:,iq)ptimestep/totarea_planet,dWtots)
	1746	if (is_master) then
	1747	print*,'After sedim pq =',dWtot,' kg m-2'
	1748	print*,'After sedim pdq =',dWtots,' kg m-2'
	1749	endif
[1477]	1750	endif
[253]	1751
[1477]	1752	! Whether it falls as rain or snow depends only on the surface temperature
	1753	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqsed(1:ngrid,1:nlayer,1:nq)
	1754	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqssed(1:ngrid,1:nq)
[253]	1755
[1477]	1756	! Test water conservation
	1757	if(watertest)then
[1524]	1758	call planetwide_sumval(massarea(:,:)(zdqsed(:,:,igcm_h2o_vap)+zdqsed(:,:,igcm_h2o_ice))ptimestep/totarea_planet,dWtot)
[1542]	1759	call planetwide_sumval((zdqssed(:,igcm_h2o_vap)+zdqssed(:,igcm_h2o_ice))cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1760	if (is_master) then
	1761	print*,'In sedim atmospheric ice change =',dWtot,' kg m-2'
	1762	print*,'In sedim surface ice change =',dWtots,' kg m-2'
	1763	print*,'In sedim non-cons factor =',dWtot+dWtots,' kg m-2'
	1764	endif
[1477]	1765	endif
[253]	1766
[1477]	1767	end if ! end of 'sedimentation'
[253]	1768
	1769
[1477]	1770	! ---------------
[1801]	1771	! VI.4. Updates
[1477]	1772	! ---------------
[253]	1773
[1477]	1774	! Updating Atmospheric Mass and Tracers budgets.
[728]	1775	if(mass_redistrib) then
	1776
[1477]	1777	zdmassmr(1:ngrid,1:nlayer) = mass(1:ngrid,1:nlayer) * &
[1524]	1778	( zdqevap(1:ngrid,1:nlayer) &
	1779	+ zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap) &
	1780	+ dqmoist(1:ngrid,1:nlayer,igcm_h2o_vap) &
	1781	+ dqvaplscale(1:ngrid,1:nlayer) )
[863]	1782
	1783	do ig = 1, ngrid
[1524]	1784	zdmassmr_col(ig)=SUM(zdmassmr(ig,1:nlayer))
[863]	1785	enddo
[728]	1786
[1524]	1787	call writediagfi(ngrid,"mass_evap","mass gain"," ",3,zdmassmr)
	1788	call writediagfi(ngrid,"mass_evap_col","mass gain col"," ",2,zdmassmr_col)
	1789	call writediagfi(ngrid,"mass","mass","kg/m2",3,mass)
[728]	1790
[1524]	1791	call mass_redistribution(ngrid,nlayer,nq,ptimestep, &
[1477]	1792	rnat,capcal,pplay,pplev,pt,tsurf,pq,qsurf, &
[1524]	1793	pu,pv,pdt,zdtsurf,pdq,pdu,pdv,zdmassmr, &
	1794	zdtmr,zdtsurfmr,zdpsrfmr,zdumr,zdvmr,zdqmr,zdqsurfmr)
	1795
[1308]	1796	pdq(1:ngrid,1:nlayer,1:nq) = pdq(1:ngrid,1:nlayer,1:nq) + zdqmr(1:ngrid,1:nlayer,1:nq)
[1477]	1797	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + zdqsurfmr(1:ngrid,1:nq)
	1798	pdt(1:ngrid,1:nlayer) = pdt(1:ngrid,1:nlayer) + zdtmr(1:ngrid,1:nlayer)
	1799	pdu(1:ngrid,1:nlayer) = pdu(1:ngrid,1:nlayer) + zdumr(1:ngrid,1:nlayer)
	1800	pdv(1:ngrid,1:nlayer) = pdv(1:ngrid,1:nlayer) + zdvmr(1:ngrid,1:nlayer)
[1524]	1801	pdpsrf(1:ngrid) = pdpsrf(1:ngrid) + zdpsrfmr(1:ngrid)
[1477]	1802	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurfmr(1:ngrid)
[1524]	1803
	1804	endif
[728]	1805
[1477]	1806	! ------------------
[1801]	1807	! VI.5. Slab Ocean
[1477]	1808	! ------------------
[728]	1809
[1477]	1810	if (ok_slab_ocean)then
[728]	1811
[1477]	1812	do ig=1,ngrid
	1813	qsurfint(:,igcm_h2o_ice)=qsurf(:,igcm_h2o_ice)
	1814	enddo
[1297]	1815
[1477]	1816	call ocean_slab_ice(ptimestep, &
	1817	ngrid, knindex, tsea_ice, fluxrad, &
	1818	zdqssnow, qsurf(:,igcm_h2o_ice), &
	1819	- zdqsdif(:,igcm_h2o_vap), &
	1820	flux_sens_lat,tsea_ice, pctsrf_sic, &
	1821	taux,tauy,icount)
[1297]	1822
	1823
[1477]	1824	call ocean_slab_get_vars(ngrid,tslab, &
	1825	sea_ice, flux_o, &
	1826	flux_g, dt_hdiff, &
	1827	dt_ekman)
	1828
[1297]	1829	do ig=1,ngrid
	1830	if (nint(rnat(ig)).eq.1)then
[1477]	1831	tslab(ig,1) = 0.
	1832	tslab(ig,2) = 0.
	1833	tsea_ice(ig) = 0.
	1834	sea_ice(ig) = 0.
	1835	pctsrf_sic(ig) = 0.
	1836	qsurf(ig,igcm_h2o_ice) = qsurfint(ig,igcm_h2o_ice)
[1297]	1837	endif
	1838	enddo
	1839
[1477]	1840	endif ! end of 'ok_slab_ocean'
[1297]	1841
[1477]	1842	! -----------------------------
[1801]	1843	! VI.6. Surface Tracer Update
[1477]	1844	! -----------------------------
[1297]	1845
[253]	1846	if(hydrology)then
[1297]	1847
[1482]	1848	call hydrol(ngrid,nq,ptimestep,rnat,tsurf,qsurf,dqsurf,dqs_hyd, &
	1849	capcal,albedo,albedo_bareground, &
[1524]	1850	albedo_snow_SPECTV,albedo_co2_ice_SPECTV, &
[1482]	1851	mu0,zdtsurf,zdtsurf_hyd,hice,pctsrf_sic, &
[1477]	1852	sea_ice)
[253]	1853
[1484]	1854	zdtsurf(1:ngrid) = zdtsurf(1:ngrid) + zdtsurf_hyd(1:ngrid)
	1855	dqsurf(1:ngrid,1:nq) = dqsurf(1:ngrid,1:nq) + dqs_hyd(1:ngrid,1:nq)
	1856
	1857	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
[253]	1858
[1477]	1859	! Test energy conservation
[253]	1860	if(enertest)then
[1542]	1861	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf_hyd(:)/totarea_planet,dEtots)
[1524]	1862	if (is_master) print*,'In hydrol surface energy change =',dEtots,' W m-2'
[253]	1863	endif
	1864
	1865	! test water conservation
	1866	if(watertest)then
[1542]	1867	call planetwide_sumval(dqs_hyd(:,igcm_h2o_ice)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1868	if (is_master) print*,'In hydrol surface ice change =',dWtots,' kg m-2'
[1542]	1869	call planetwide_sumval(dqs_hyd(:,igcm_h2o_vap)cell_area(:)ptimestep/totarea_planet,dWtots)
[1524]	1870	if (is_master) then
[1477]	1871	print*,'In hydrol surface water change =',dWtots,' kg m-2'
	1872	print*,'---------------------------------------------------------------'
[1524]	1873	endif
[253]	1874	endif
	1875
[1477]	1876	else ! of if (hydrology)
[253]	1877
[1484]	1878	qsurf(1:ngrid,1:nq) = qsurf(1:ngrid,1:nq) + ptimestep*dqsurf(1:ngrid,1:nq)
[253]	1879
[1477]	1880	end if ! of if (hydrology)
[253]	1881
[1477]	1882	! Add qsurf to qsurf_hist, which is what we save in diagfi.nc. At the same time, we set the water
	1883	! content of ocean gridpoints back to zero, in order to avoid rounding errors in vdifc, rain.
[622]	1884	qsurf_hist(:,:) = qsurf(:,:)
[253]	1885
	1886	if(ice_update)then
[787]	1887	ice_min(1:ngrid)=min(ice_min(1:ngrid),qsurf(1:ngrid,igcm_h2o_ice))
[253]	1888	endif
	1889
[1477]	1890	endif! end of if 'tracer'
[253]	1891
	1892
[1477]	1893	!------------------------------------------------
	1894	! VII. Surface and sub-surface soil temperature
	1895	!------------------------------------------------
[253]	1896
[1477]	1897
	1898	! Increment surface temperature
[1297]	1899	if(ok_slab_ocean)then
	1900	do ig=1,ngrid
	1901	if (nint(rnat(ig)).eq.0)then
	1902	zdtsurf(ig)= (tslab(ig,1) &
	1903	+ pctsrf_sic(ig)*(tsea_ice(ig)-tslab(ig,1))-tsurf(ig))/ptimestep
	1904	endif
	1905	tsurf(ig)=tsurf(ig)+ptimestep*zdtsurf(ig)
	1906	enddo
	1907
	1908	else
	1909	tsurf(1:ngrid)=tsurf(1:ngrid)+ptimestep*zdtsurf(1:ngrid)
[1477]	1910	endif ! end of 'ok_slab_ocean'
[1297]	1911
[1477]	1912
	1913	! Compute soil temperatures and subsurface heat flux.
[253]	1914	if (callsoil) then
[787]	1915	call soil(ngrid,nsoilmx,.false.,lastcall,inertiedat, &
[1477]	1916	ptimestep,tsurf,tsoil,capcal,fluxgrd)
[253]	1917	endif
	1918
[1297]	1919
	1920	if (ok_slab_ocean) then
[1477]	1921
	1922	do ig=1,ngrid
	1923
	1924	fluxgrdocean(ig)=fluxgrd(ig)
	1925	if (nint(rnat(ig)).eq.0) then
[1297]	1926	capcal(ig)=capcalocean
	1927	fluxgrd(ig)=0.
	1928	fluxgrdocean(ig)=pctsrf_sic(ig)flux_g(ig)+(1-pctsrf_sic(ig))(dt_hdiff(ig,1)+dt_ekman(ig,1))
[1477]	1929	do iq=1,nsoilmx
	1930	tsoil(ig,iq)=tsurf(ig)
	1931	enddo
	1932	if (pctsrf_sic(ig).gt.0.5) then
	1933	capcal(ig)=capcalseaice
	1934	if (qsurf(ig,igcm_h2o_ice).gt.0.) then
	1935	capcal(ig)=capcalsno
	1936	endif
	1937	endif
	1938	endif
	1939
	1940	enddo
	1941
	1942	endif !end of 'ok_slab_ocean'
[1297]	1943
[1477]	1944
	1945	! Test energy conservation
[253]	1946	if(enertest)then
[1542]	1947	call planetwide_sumval(cell_area(:)capcal(:)zdtsurf(:)/totarea_planet,dEtots)
[1524]	1948	if (is_master) print*,'Surface energy change =',dEtots,' W m-2'
[253]	1949	endif
	1950
	1951
[1477]	1952	!---------------------------------------------------
	1953	! VIII. Perform diagnostics and write output files
	1954	!---------------------------------------------------
	1955
	1956	! Note : For output only: the actual model integration is performed in the dynamics.
	1957
	1958
[253]	1959
[1477]	1960	! Temperature, zonal and meridional winds.
[1308]	1961	zt(1:ngrid,1:nlayer) = pt(1:ngrid,1:nlayer) + pdt(1:ngrid,1:nlayer)*ptimestep
	1962	zu(1:ngrid,1:nlayer) = pu(1:ngrid,1:nlayer) + pdu(1:ngrid,1:nlayer)*ptimestep
	1963	zv(1:ngrid,1:nlayer) = pv(1:ngrid,1:nlayer) + pdv(1:ngrid,1:nlayer)*ptimestep
[2176]	1964
	1965	! Recast thermal plume vertical velocity array for outputs
	1966	IF (calltherm) THEN
	1967	DO ig=1,ngrid
	1968	DO l=1,nlayer
	1969	zw2_bis(ig,l) = zw2(ig,l)
[2232]	1970	fm_bis(ig,l) = fm(ig,l)
[2176]	1971	ENDDO
	1972	ENDDO
	1973	ENDIF
[253]	1974
[1477]	1975	! Diagnostic.
[1637]	1976	zdtdyn(1:ngrid,1:nlayer) = (pt(1:ngrid,1:nlayer)-ztprevious(1:ngrid,1:nlayer)) / ptimestep
[1308]	1977	ztprevious(1:ngrid,1:nlayer) = zt(1:ngrid,1:nlayer)
[253]	1978
[1637]	1979	zdudyn(1:ngrid,1:nlayer) = (pu(1:ngrid,1:nlayer)-zuprevious(1:ngrid,1:nlayer)) / ptimestep
	1980	zuprevious(1:ngrid,1:nlayer) = zu(1:ngrid,1:nlayer)
	1981
[253]	1982	if(firstcall)then
[1308]	1983	zdtdyn(1:ngrid,1:nlayer)=0.0
[1637]	1984	zdudyn(1:ngrid,1:nlayer)=0.0
[253]	1985	endif
	1986
[1477]	1987	! Dynamical heating diagnostic.
[253]	1988	do ig=1,ngrid
[1637]	1989	fluxdyn(ig)= SUM(zdtdyn(ig,:) mass(ig,:))cpp
[253]	1990	enddo
	1991
[1477]	1992	! Tracers.
[1308]	1993	zq(1:ngrid,1:nlayer,1:nq) = pq(1:ngrid,1:nlayer,1:nq) + pdq(1:ngrid,1:nlayer,1:nq)*ptimestep
[253]	1994
[1477]	1995	! Surface pressure.
[787]	1996	ps(1:ngrid) = pplev(1:ngrid,1) + pdpsrf(1:ngrid)*ptimestep
[253]	1997
	1998
	1999
[1477]	2000	! Surface and soil temperature information
[1542]	2001	call planetwide_sumval(cell_area(:)*tsurf(:)/totarea_planet,Ts1)
[1295]	2002	call planetwide_minval(tsurf(:),Ts2)
	2003	call planetwide_maxval(tsurf(:),Ts3)
[253]	2004	if(callsoil)then
[1542]	2005	TsS = SUM(cell_area(:)*tsoil(:,nsoilmx))/totarea ! mean temperature at bottom soil layer
[1699]	2006	if (is_master) then
	2007	print*,' ave[Tsurf] min[Tsurf] max[Tsurf] ave[Tdeep]'
	2008	print*,Ts1,Ts2,Ts3,TsS
	2009	end if
[959]	2010	else
[1699]	2011	if (is_master) then
	2012	print*,' ave[Tsurf] min[Tsurf] max[Tsurf]'
[1477]	2013	print*,Ts1,Ts2,Ts3
[1524]	2014	endif
[959]	2015	end if
[253]	2016
	2017
[1477]	2018	! Check the energy balance of the simulation during the run
[253]	2019	if(corrk)then
	2020
[1542]	2021	call planetwide_sumval(cell_area(:)*fluxtop_dn(:)/totarea_planet,ISR)
	2022	call planetwide_sumval(cell_area(:)*fluxabs_sw(:)/totarea_planet,ASR)
	2023	call planetwide_sumval(cell_area(:)*fluxtop_lw(:)/totarea_planet,OLR)
	2024	call planetwide_sumval(cell_area(:)*fluxgrd(:)/totarea_planet,GND)
	2025	call planetwide_sumval(cell_area(:)*fluxdyn(:)/totarea_planet,DYN)
[787]	2026	do ig=1,ngrid
[253]	2027	if(fluxtop_dn(ig).lt.0.0)then
	2028	print*,'fluxtop_dn has gone crazy'
	2029	print*,'fluxtop_dn=',fluxtop_dn(ig)
	2030	print*,'tau_col=',tau_col(ig)
	2031	print*,'aerosol=',aerosol(ig,:,:)
	2032	print*,'temp= ',pt(ig,:)
	2033	print*,'pplay= ',pplay(ig,:)
	2034	call abort
	2035	endif
	2036	end do
	2037
[787]	2038	if(ngrid.eq.1)then
[253]	2039	DYN=0.0
	2040	endif
[1524]	2041
	2042	if (is_master) then
[1477]	2043	print*,' ISR ASR OLR GND DYN [W m^-2]'
	2044	print*, ISR,ASR,OLR,GND,DYN
[1524]	2045	endif
[253]	2046
[1295]	2047	if(enertest .and. is_master)then
[651]	2048	print*,'SW flux/heating difference SW++ - ASR = ',dEtotSW+dEtotsSW-ASR,' W m-2'
	2049	print*,'LW flux/heating difference LW++ - OLR = ',dEtotLW+dEtotsLW+OLR,' W m-2'
	2050	print*,'LW energy balance LW++ + ASR = ',dEtotLW+dEtotsLW+ASR,' W m-2'
[253]	2051	endif
	2052
[1295]	2053	if(meanOLR .and. is_master)then
[1216]	2054	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
[253]	2055	! to record global radiative balance
[588]	2056	open(92,file="rad_bal.out",form='formatted',position='append')
[651]	2057	write(92,*) zday,ISR,ASR,OLR
[253]	2058	close(92)
[588]	2059	open(93,file="tem_bal.out",form='formatted',position='append')
[1295]	2060	if(callsoil)then
[1524]	2061	write(93,*) zday,Ts1,Ts2,Ts3,TsS
	2062	else
	2063	write(93,*) zday,Ts1,Ts2,Ts3
	2064	endif
[253]	2065	close(93)
	2066	endif
	2067	endif
	2068
[1477]	2069	endif ! end of 'corrk'
[253]	2070
[651]	2071
[1477]	2072	! Diagnostic to test radiative-convective timescales in code.
[253]	2073	if(testradtimes)then
[588]	2074	open(38,file="tau_phys.out",form='formatted',position='append')
[253]	2075	ig=1
	2076	do l=1,nlayer
	2077	write(38,*) -1./pdt(ig,l),pt(ig,l),pplay(ig,l)
	2078	enddo
	2079	close(38)
[726]	2080	print*,'As testradtimes enabled,'
	2081	print*,'exiting physics on first call'
[253]	2082	call abort
	2083	endif
	2084
[1477]	2085
	2086	! Compute column amounts (kg m-2) if tracers are enabled.
[253]	2087	if(tracer)then
[787]	2088	qcol(1:ngrid,1:nq)=0.0
[253]	2089	do iq=1,nq
[1477]	2090	do ig=1,ngrid
	2091	qcol(ig,iq) = SUM( zq(ig,1:nlayer,iq) * mass(ig,1:nlayer))
	2092	enddo
[253]	2093	enddo
	2094
[1477]	2095	! Generalised for arbitrary aerosols now. By LK
[787]	2096	reffcol(1:ngrid,1:naerkind)=0.0
[728]	2097	if(co2cond.and.(iaero_co2.ne.0))then
[1308]	2098	call co2_reffrad(ngrid,nlayer,nq,zq,reffrad(1,1,iaero_co2))
[787]	2099	do ig=1,ngrid
[1308]	2100	reffcol(ig,iaero_co2) = SUM(zq(ig,1:nlayer,igcm_co2_ice)reffrad(ig,1:nlayer,iaero_co2)mass(ig,1:nlayer))
[253]	2101	enddo
[728]	2102	endif
	2103	if(water.and.(iaero_h2o.ne.0))then
[1308]	2104	call h2o_reffrad(ngrid,nlayer,zq(1,1,igcm_h2o_ice),zt, &
[858]	2105	reffrad(1,1,iaero_h2o),nueffrad(1,1,iaero_h2o))
[787]	2106	do ig=1,ngrid
[1308]	2107	reffcol(ig,iaero_h2o) = SUM(zq(ig,1:nlayer,igcm_h2o_ice)reffrad(ig,1:nlayer,iaero_h2o)mass(ig,1:nlayer))
[728]	2108	enddo
	2109	endif
[253]	2110
[1477]	2111	endif ! end of 'tracer'
[253]	2112
	2113
[1477]	2114	! Test for water conservation.
[253]	2115	if(water)then
	2116
[1542]	2117	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_ice)/totarea_planet,icesrf)
	2118	call planetwide_sumval(cell_area(:)*qsurf_hist(:,igcm_h2o_vap)/totarea_planet,liqsrf)
	2119	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_ice)/totarea_planet,icecol)
	2120	call planetwide_sumval(cell_area(:)*qcol(:,igcm_h2o_vap)/totarea_planet,vapcol)
[253]	2121
[651]	2122	h2otot = icesrf + liqsrf + icecol + vapcol
[1524]	2123
	2124	if (is_master) then
[1477]	2125	print*,' Total water amount [kg m^-2]: ',h2otot
	2126	print*,' Surface ice Surface liq. Atmos. con. Atmos. vap. [kg m^-2] '
	2127	print*, icesrf,liqsrf,icecol,vapcol
[1524]	2128	endif
[253]	2129
[1295]	2130	if(meanOLR .and. is_master)then
[1216]	2131	if((ngrid.gt.1) .or. (mod(icount-1,ecritphy).eq.0))then
[253]	2132	! to record global water balance
[588]	2133	open(98,file="h2o_bal.out",form='formatted',position='append')
[651]	2134	write(98,*) zday,icesrf,liqsrf,icecol,vapcol
[253]	2135	close(98)
	2136	endif
	2137	endif
	2138
	2139	endif
	2140
	2141
[1477]	2142	! Calculate RH (Relative Humidity) for diagnostic.
[253]	2143	if(water)then
[1477]	2144
[253]	2145	do l = 1, nlayer
[787]	2146	do ig=1,ngrid
[728]	2147	call Psat_water(zt(ig,l),pplay(ig,l),psat_tmp,qsat(ig,l))
[253]	2148	RH(ig,l) = zq(ig,l,igcm_h2o_vap) / qsat(ig,l)
	2149	enddo
	2150	enddo
	2151
[1477]	2152	! Compute maximum possible H2O column amount (100% saturation).
[253]	2153	do ig=1,ngrid
[1477]	2154	H2Omaxcol(ig) = SUM( qsat(ig,:) * mass(ig,:))
[253]	2155	enddo
	2156
[1477]	2157	endif ! end of 'water'
[253]	2158
[2724]	2159	! Calculate RH_generic (Generic Relative Humidity) for diagnostic.
	2160	if(generic_condensation)then
	2161	do iq=1,nq
[996]	2162
[2724]	2163	call generic_tracer_index(nq,iq,igcm_generic_vap,igcm_generic_ice,call_ice_vap_generic)
	2164
	2165	if (call_ice_vap_generic) then ! to call only one time the ice/vap pair of a tracer
	2166
	2167	do l = 1, nlayer
	2168	do ig=1,ngrid
	2169	call Psat_generic(zt(ig,l),pplay(ig,l),metallicity,psat_tmp_generic,qsat_generic(ig,l,iq))
	2170	RH_generic(ig,l,iq) = zq(ig,l,igcm_generic_vap) / qsat_generic(ig,l,iq)
	2171	enddo
	2172	enddo
	2173
	2174	end if
	2175
	2176	end do ! iq=1,nq
	2177
	2178	endif ! end of 'generic_condensation'
	2179
	2180
[1699]	2181	if (is_master) print,'--> Ls =',zls180./pi
[1477]	2182
	2183
	2184	!----------------------------------------------------------------------
[253]	2185	! Writing NetCDF file "RESTARTFI" at the end of the run
[1477]	2186	!----------------------------------------------------------------------
	2187
[253]	2188	! Note: 'restartfi' is stored just before dynamics are stored
	2189	! in 'restart'. Between now and the writting of 'restart',
	2190	! there will have been the itau=itau+1 instruction and
	2191	! a reset of 'time' (lastacll = .true. when itau+1= itaufin)
	2192	! thus we store for time=time+dtvr
	2193
	2194
	2195
[1477]	2196	if(lastcall) then
	2197	ztime_fin = ptime + ptimestep/(float(iphysiq)*daysec)
[305]	2198
[1477]	2199	! Update surface ice distribution to iterate to steady state if requested
	2200	if(ice_update)then
[253]	2201
[1477]	2202	do ig=1,ngrid
[305]	2203
[1477]	2204	delta_ice = (qsurf(ig,igcm_h2o_ice)-ice_initial(ig))
	2205
	2206	! add multiple years of evolution
	2207	qsurf_hist(ig,igcm_h2o_ice) = qsurf_hist(ig,igcm_h2o_ice) + delta_ice*icetstep
[305]	2208
[1477]	2209	! if ice has gone -ve, set to zero
	2210	if(qsurf_hist(ig,igcm_h2o_ice).lt.0.0)then
	2211	qsurf_hist(ig,igcm_h2o_ice) = 0.0
	2212	endif
[305]	2213
[1477]	2214	! if ice is seasonal, set to zero (NEW)
	2215	if(ice_min(ig).lt.0.01)then
	2216	qsurf_hist(ig,igcm_h2o_ice) = 0.0
	2217	endif
[253]	2218
[1477]	2219	enddo
[305]	2220
[1477]	2221	! enforce ice conservation
[1542]	2222	ice_tot= SUM(qsurf_hist(:,igcm_h2o_ice)*cell_area(:) )/SUM(cell_area(:))
[1477]	2223	qsurf_hist(:,igcm_h2o_ice) = qsurf_hist(:,igcm_h2o_ice)*(icesrf/ice_tot)
[305]	2224
[1477]	2225	endif
[1836]	2226	#ifndef MESOSCALE
	2227
[1477]	2228	if (ngrid.ne.1) then
	2229	write(,)'PHYSIQ: for physdem ztime_fin =',ztime_fin
	2230
	2231	call physdem1("restartfi.nc",nsoilmx,ngrid,nlayer,nq, &
	2232	ptimestep,ztime_fin, &
	2233	tsurf,tsoil,emis,q2,qsurf_hist, &
	2234	cloudfrac,totcloudfrac,hice, &
	2235	rnat,pctsrf_sic,tslab,tsea_ice,sea_ice)
	2236	endif
[1836]	2237	#endif
[1477]	2238	if(ok_slab_ocean) then
	2239	call ocean_slab_final!(tslab, seaice)
	2240	end if
[1297]	2241
[1682]	2242	endif ! end of 'lastcall'
[253]	2243
[861]	2244
[1477]	2245	!-----------------------------------
[253]	2246	! Saving statistics :
[1477]	2247	!-----------------------------------
[253]	2248
[1477]	2249	! Note :("stats" stores and accumulates 8 key variables in file "stats.nc"
	2250	! which can later be used to make the statistic files of the run:
	2251	! "stats") only possible in 3D runs !!!
	2252
[253]	2253
[1477]	2254	if (callstats) then
[253]	2255
[1477]	2256	call wstats(ngrid,"ps","Surface pressure","Pa",2,ps)
	2257	call wstats(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	2258	call wstats(ngrid,"fluxsurf_lw", &
	2259	"Thermal IR radiative flux to surface","W.m-2",2, &
	2260	fluxsurf_lw)
	2261	call wstats(ngrid,"fluxtop_lw", &
	2262	"Thermal IR radiative flux to space","W.m-2",2, &
	2263	fluxtop_lw)
	2264
[253]	2265	! call wstats(ngrid,"fluxsurf_sw", &
	2266	! "Solar radiative flux to surface","W.m-2",2, &
[1477]	2267	! fluxsurf_sw_tot)
[253]	2268	! call wstats(ngrid,"fluxtop_sw", &
	2269	! "Solar radiative flux to space","W.m-2",2, &
	2270	! fluxtop_sw_tot)
[526]	2271
[253]	2272
[1477]	2273	call wstats(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
	2274	call wstats(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
	2275	call wstats(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
[1482]	2276	!call wstats(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
	2277	!call wstats(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
[1477]	2278	call wstats(ngrid,"p","Pressure","Pa",3,pplay)
	2279	call wstats(ngrid,"temp","Atmospheric temperature","K",3,zt)
	2280	call wstats(ngrid,"u","Zonal (East-West) wind","m.s-1",3,zu)
	2281	call wstats(ngrid,"v","Meridional (North-South) wind","m.s-1",3,zv)
	2282	call wstats(ngrid,"w","Vertical (down-up) wind","m.s-1",3,pw)
	2283	call wstats(ngrid,"q2","Boundary layer eddy kinetic energy","m2.s-2",3,q2)
[526]	2284
[1477]	2285	if (tracer) then
	2286	do iq=1,nq
	2287	call wstats(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
	2288	call wstats(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
	2289	'kg m^-2',2,qsurf(1,iq) )
	2290	call wstats(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
[526]	2291	'kg m^-2',2,qcol(1,iq) )
[1477]	2292
	2293	! call wstats(ngrid,trim(noms(iq))//'_reff', &
[726]	2294	! trim(noms(iq))//'_reff', &
	2295	! 'm',3,reffrad(1,1,iq))
[1477]	2296
	2297	end do
	2298
[253]	2299	if (water) then
[1308]	2300	vmr=zq(1:ngrid,1:nlayer,igcm_h2o_vap)*mugaz/mmol(igcm_h2o_vap)
[1477]	2301	call wstats(ngrid,"vmr_h2ovapor", &
	2302	"H2O vapour volume mixing ratio","mol/mol", &
	2303	3,vmr)
	2304	endif
[253]	2305
[1477]	2306	endif ! end of 'tracer'
[253]	2307
[1477]	2308	if(watercond.and.CLFvarying)then
	2309	call wstats(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
	2310	call wstats(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
	2311	call wstats(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
	2312	call wstats(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
	2313	call wstats(ngrid,"RH","relative humidity"," ",3,RH)
	2314	endif
[1297]	2315
[1477]	2316	if (ok_slab_ocean) then
[1297]	2317	call wstats(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
	2318	call wstats(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
	2319	call wstats(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
	2320	call wstats(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
	2321	call wstats(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
	2322	call wstats(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
	2323	call wstats(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
	2324	call wstats(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
	2325	call wstats(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
	2326	call wstats(ngrid,"rnat","nature of the surface","",2,rnat)
[1477]	2327	endif
[1297]	2328
[1477]	2329	if(lastcall) then
	2330	write (,) "Writing stats..."
	2331	call mkstats(ierr)
	2332	endif
	2333
	2334	endif ! end of 'callstats'
[253]	2335
[1836]	2336	#ifndef MESOSCALE
	2337
[1477]	2338	!-----------------------------------------------------------------------------------------------------
	2339	! OUTPUT in netcdf file "DIAGFI.NC", containing any variable for diagnostic
	2340	!
	2341	! Note 1 : output with period "ecritphy", set in "run.def"
	2342	!
	2343	! Note 2 : writediagfi can also be called from any other subroutine for any variable,
	2344	! but its preferable to keep all the calls in one place ...
	2345	!-----------------------------------------------------------------------------------------------------
[253]	2346
[1477]	2347	call writediagfi(ngrid,"Ls","solar longitude","deg",0,zls*180./pi)
	2348	call writediagfi(ngrid,"Lss","sub solar longitude","deg",0,zlss*180./pi)
	2349	call writediagfi(ngrid,"RA","right ascension","deg",0,right_ascen*180./pi)
	2350	call writediagfi(ngrid,"Declin","solar declination","deg",0,declin*180./pi)
	2351	call writediagfi(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	2352	call writediagfi(ngrid,"ps","Surface pressure","Pa",2,ps)
	2353	call writediagfi(ngrid,"temp","temperature","K",3,zt)
	2354	call writediagfi(ngrid,"teta","potential temperature","K",3,zh)
	2355	call writediagfi(ngrid,"u","Zonal wind","m.s-1",3,zu)
	2356	call writediagfi(ngrid,"v","Meridional wind","m.s-1",3,zv)
	2357	call writediagfi(ngrid,"w","Vertical wind","m.s-1",3,pw)
	2358	call writediagfi(ngrid,"p","Pressure","Pa",3,pplay)
	2359
[965]	2360	! Subsurface temperatures
[969]	2361	! call writediagsoil(ngrid,"tsurf","Surface temperature","K",2,tsurf)
	2362	! call writediagsoil(ngrid,"temp","temperature","K",3,tsoil)
[965]	2363
[1477]	2364	! Oceanic layers
	2365	if(ok_slab_ocean) then
	2366	call writediagfi(ngrid,"pctsrf_sic","pct ice/sea","",2,pctsrf_sic)
	2367	call writediagfi(ngrid,"tsea_ice","tsea_ice","K",2,tsea_ice)
	2368	call writediagfi(ngrid,"sea_ice","sea ice","kg/m2",2,sea_ice)
	2369	call writediagfi(ngrid,"tslab1","tslab1","K",2,tslab(:,1))
	2370	call writediagfi(ngrid,"tslab2","tslab2","K",2,tslab(:,2))
	2371	call writediagfi(ngrid,"dt_hdiff1","dt_hdiff1","K/s",2,dt_hdiff(:,1))
	2372	call writediagfi(ngrid,"dt_hdiff2","dt_hdiff2","K/s",2,dt_hdiff(:,2))
	2373	call writediagfi(ngrid,"dt_ekman1","dt_ekman1","K/s",2,dt_ekman(:,1))
	2374	call writediagfi(ngrid,"dt_ekman2","dt_ekman2","K/s",2,dt_ekman(:,2))
	2375	call writediagfi(ngrid,"rnat","nature of the surface","",2,rnat)
	2376	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
	2377	call writediagfi(ngrid,"latentFlux","latent heat flux","w.m^-2",2,zdqsdif(:,igcm_h2o_vap)*RLVTT)
	2378	endif
	2379
[2060]	2380	! Thermal plume model
	2381	if (calltherm) then
[2232]	2382	call writediagfi(ngrid,'entr','Entrainment','kg m$^{-2}$ s$^{-1}$', 3, entr)
	2383	call writediagfi(ngrid,'detr','Detrainment','kg m$^{-2}$ s$^{-1}$', 3, detr)
	2384	call writediagfi(ngrid,'fm','Mass flux','kg m$^{-2}$ s$^{-1}$', 3, fm_bis)
[2176]	2385	call writediagfi(ngrid,'w_plm','Squared vertical velocity','m s$^{-1}$', 3, zw2_bis)
[2060]	2386	call writediagfi(ngrid,'fraca','Updraft fraction','', 3, fraca)
	2387	endif
[2299]	2388
	2389	! GW non-oro outputs
	2390	if (calllott_nonoro) then
[2595]	2391	call WRITEDIAGFI(ngrid,"dugwno","GW non-oro dU","m/s2", 3,d_u_hin)
	2392	call WRITEDIAGFI(ngrid,"dvgwno","GW non-oro dV","m/s2", 3,d_v_hin)
[2299]	2393	endif
[2060]	2394
[1477]	2395	! Total energy balance diagnostics
	2396	if(callrad.and.(.not.newtonian))then
	2397
[1482]	2398	!call writediagfi(ngrid,"ALB","Surface albedo"," ",2,albedo_equivalent)
	2399	!call writediagfi(ngrid,"ALB_1st","First Band Surface albedo"," ",2,albedo(:,1))
[1477]	2400	call writediagfi(ngrid,"ISR","incoming stellar rad.","W m-2",2,fluxtop_dn)
	2401	call writediagfi(ngrid,"ASR","absorbed stellar rad.","W m-2",2,fluxabs_sw)
	2402	call writediagfi(ngrid,"OLR","outgoing longwave rad.","W m-2",2,fluxtop_lw)
	2403	call writediagfi(ngrid,"shad","rings"," ", 2, fract)
	2404
[1016]	2405	! call writediagfi(ngrid,"ASRcs","absorbed stellar rad (cs).","W m-2",2,fluxabs_sw1)
	2406	! call writediagfi(ngrid,"OLRcs","outgoing longwave rad (cs).","W m-2",2,fluxtop_lw1)
	2407	! call writediagfi(ngrid,"fluxsurfsw","sw surface flux.","W m-2",2,fluxsurf_sw)
	2408	! call writediagfi(ngrid,"fluxsurflw","lw back radiation.","W m-2",2,fluxsurf_lw)
	2409	! call writediagfi(ngrid,"fluxsurfswcs","sw surface flux (cs).","W m-2",2,fluxsurf_sw1)
	2410	! call writediagfi(ngrid,"fluxsurflwcs","lw back radiation (cs).","W m-2",2,fluxsurf_lw1)
[1477]	2411
	2412	if(ok_slab_ocean) then
	2413	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrdocean)
	2414	else
	2415	call writediagfi(ngrid,"GND","heat flux from ground","W m-2",2,fluxgrd)
	2416	endif
	2417
	2418	call writediagfi(ngrid,"DYN","dynamical heat input","W m-2",2,fluxdyn)
	2419
	2420	endif ! end of 'callrad'
[1524]	2421
[1477]	2422	if(enertest) then
	2423
[1524]	2424	if (calldifv) then
[1477]	2425
[1524]	2426	call writediagfi(ngrid,"q2","turbulent kinetic energy","J.kg^-1",3,q2)
[1477]	2427	call writediagfi(ngrid,"sensibFlux","sensible heat flux","w.m^-2",2,sensibFlux)
	2428
[1524]	2429	! call writediagfi(ngrid,"dEzdiff","turbulent diffusion heating (-sensible flux)","w.m^-2",3,dEzdiff)
	2430	! call writediagfi(ngrid,"dEdiff","integrated turbulent diffusion heating (-sensible flux)","w.m^-2",2,dEdiff)
	2431	! call writediagfi(ngrid,"dEdiffs","In TurbDiff (correc rad+latent heat) surf nrj change","w.m^-2",2,dEdiffs)
	2432
	2433	endif
[1477]	2434
[1524]	2435	if (corrk) then
	2436	call writediagfi(ngrid,"dEzradsw","radiative heating","w.m^-2",3,dEzradsw)
	2437	call writediagfi(ngrid,"dEzradlw","radiative heating","w.m^-2",3,dEzradlw)
	2438	endif
[1477]	2439
	2440	if(watercond) then
	2441
[1524]	2442	call writediagfi(ngrid,"lscaledE","heat from largescale","W m-2",2,lscaledE)
	2443	call writediagfi(ngrid,"madjdE","heat from moistadj","W m-2",2,madjdE)
	2444	call writediagfi(ngrid,"qsatatm","atm qsat"," ",3,qsat)
[1477]	2445
[1524]	2446	! call writediagfi(ngrid,"lscaledEz","heat from largescale","W m-2",3,lscaledEz)
	2447	! call writediagfi(ngrid,"madjdEz","heat from moistadj","W m-2",3,madjdEz)
	2448	! call writediagfi(ngrid,"h2o_max_col","maximum H2O column amount","kg.m^-2",2,H2Omaxcol)
[253]	2449
[1477]	2450	endif
[2714]	2451
	2452	if (generic_condensation) then
	2453
	2454	call writediagfi(ngrid,"genericconddE","heat from generic condensation","W m-2",2,genericconddE)
	2455
	2456	endif
[1477]	2457
	2458	endif ! end of 'enertest'
[253]	2459
[2133]	2460	! Diagnostics of optical thickness
[2138]	2461	! Warning this is exp(-tau), I let you postproc with -log to have tau itself - JVO 19
[2133]	2462	if (diagdtau) then
	2463	do nw=1,L_NSPECTV
	2464	write(str2,'(i2.2)') nw
[2138]	2465	call writediagfi(ngrid,'dtauv'//str2,'Layer optical thickness attenuation in VI band '//str2,'',1,int_dtauv(:,nlayer:1:-1,nw))
[2133]	2466	enddo
	2467	do nw=1,L_NSPECTI
	2468	write(str2,'(i2.2)') nw
[2138]	2469	call writediagfi(ngrid,'dtaui'//str2,'Layer optical thickness attenuation in IR band '//str2,'',1,int_dtaui(:,nlayer:1:-1,nw))
[2133]	2470	enddo
	2471	endif
[1477]	2472
[2133]	2473
[1477]	2474	! Temporary inclusions for heating diagnostics.
	2475	!call writediagfi(ngrid,"zdtsw","SW heating","T s-1",3,zdtsw)
	2476	!call writediagfi(ngrid,"zdtlw","LW heating","T s-1",3,zdtlw)
[2299]	2477	call writediagfi(ngrid,"dtrad","radiative heating","K s-1",3,dtrad)
[1477]	2478	! call writediagfi(ngrid,"zdtdyn","Dyn. heating","T s-1",3,zdtdyn)
	2479
	2480	! For Debugging.
[368]	2481	!call writediagfi(ngrid,'rnat','Terrain type',' ',2,real(rnat))
[253]	2482	!call writediagfi(ngrid,'pphi','Geopotential',' ',3,pphi)
[1477]	2483
[253]	2484
[1477]	2485	! Output aerosols.
	2486	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
[1524]	2487	call writediagfi(ngrid,'CO2ice_reff','CO2ice_reff','m',3,reffrad(1,1,iaero_co2))
[1477]	2488	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
[1524]	2489	call writediagfi(ngrid,'H2Oice_reff','H2Oice_reff','m',3,reffrad(:,:,iaero_h2o))
[1477]	2490	if (igcm_co2_ice.ne.0.and.iaero_co2.ne.0) &
[1524]	2491	call writediagfi(ngrid,'CO2ice_reffcol','CO2ice_reffcol','um kg m^-2',2,reffcol(1,iaero_co2))
[1477]	2492	if (igcm_h2o_ice.ne.0.and.iaero_h2o.ne.0) &
[1524]	2493	call writediagfi(ngrid,'H2Oice_reffcol','H2Oice_reffcol','um kg m^-2',2,reffcol(1,iaero_h2o))
[253]	2494
[1477]	2495	! Output tracers.
	2496	if (tracer) then
	2497
	2498	do iq=1,nq
	2499	call writediagfi(ngrid,noms(iq),noms(iq),'kg/kg',3,zq(1,1,iq))
	2500	call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
	2501	'kg m^-2',2,qsurf_hist(1,iq) )
	2502	call writediagfi(ngrid,trim(noms(iq))//'_col',trim(noms(iq))//'_col', &
	2503	'kg m^-2',2,qcol(1,iq) )
	2504
[787]	2505	! call writediagfi(ngrid,trim(noms(iq))//'_surf',trim(noms(iq))//'_surf', &
[1477]	2506	! 'kg m^-2',2,qsurf(1,iq) )
[253]	2507
[1477]	2508	if(watercond.or.CLFvarying)then
	2509	call writediagfi(ngrid,"rneb_man","H2O cloud fraction (conv)"," ",3,rneb_man)
	2510	call writediagfi(ngrid,"rneb_lsc","H2O cloud fraction (large scale)"," ",3,rneb_lsc)
	2511	call writediagfi(ngrid,"CLF","H2O cloud fraction"," ",3,cloudfrac)
	2512	call writediagfi(ngrid,"CLFt","H2O column cloud fraction"," ",2,totcloudfrac)
[1524]	2513	call writediagfi(ngrid,"RH","relative humidity"," ",3,RH)
[1477]	2514	endif
[253]	2515
[1477]	2516	if(waterrain)then
	2517	call writediagfi(ngrid,"rain","rainfall","kg m-2 s-1",2,zdqsrain)
	2518	call writediagfi(ngrid,"snow","snowfall","kg m-2 s-1",2,zdqssnow)
[1859]	2519	call writediagfi(ngrid,"reevap","reevaporation of precipitation","kg m-2 s-1",2,reevap_precip)
[1477]	2520	endif
[253]	2521
[2724]	2522	if(generic_condensation)then
	2523	call writediagfi(ngrid,"rneb_generic","GCS cloud fraction (generic condensation)"," ",3,rneb_generic)
	2524	call writediagfi(ngrid,"CLF","GCS cloud fraction"," ",3,cloudfrac)
	2525	call writediagfi(ngrid,"RH_generic","GCS relative humidity"," ",3,RH_generic)
	2526	endif
	2527
[2721]	2528	if(generic_rain)then
	2529	call writediagfi(ngrid,"rain","generic rainfall","kg m-2 s-1",2,zdqsrain_generic)
	2530	call writediagfi(ngrid,"snow","generic snowfall","kg m-2 s-1",2,zdqssnow_generic)
	2531	call writediagfi(ngrid,"reevap","generic reevaporation of precipitation","kg m-2 s-1",2,reevap_precip_generic)
	2532	endif
	2533
[1477]	2534	if((hydrology).and.(.not.ok_slab_ocean))then
	2535	call writediagfi(ngrid,"hice","oceanic ice height","m",2,hice)
	2536	endif
[253]	2537
[1477]	2538	if(ice_update)then
	2539	call writediagfi(ngrid,"ice_min","min annual ice","m",2,ice_min)
	2540	call writediagfi(ngrid,"ice_ini","initial annual ice","m",2,ice_initial)
	2541	endif
[253]	2542
[1477]	2543	do ig=1,ngrid
	2544	if(tau_col(ig).gt.1.e3)then
	2545	print*,'WARNING: tau_col=',tau_col(ig)
	2546	print*,'at ig=',ig,'in PHYSIQ'
	2547	endif
	2548	end do
[253]	2549
[1477]	2550	call writediagfi(ngrid,"tau_col","Total aerosol optical depth","[]",2,tau_col)
[253]	2551
[1477]	2552	enddo ! end of 'nq' loop
	2553
	2554	endif ! end of 'tracer'
[253]	2555
[1477]	2556
	2557	! Output spectrum.
[526]	2558	if(specOLR.and.corrk)then
[728]	2559	call writediagspecIR(ngrid,"OLR3D","OLR(lon,lat,band)","W/m^2/cm^-1",3,OLR_nu)
	2560	call writediagspecVI(ngrid,"OSR3D","OSR(lon,lat,band)","W/m^2/cm^-1",3,OSR_nu)
[2537]	2561	call writediagspecVI(ngrid,"GSR3D","GSR(lon,lat,band)","W/m^2/cm^-1",3,GSR_nu)
[526]	2562	endif
[253]	2563
[1836]	2564	#else
	2565	comm_HR_SW(1:ngrid,1:nlayer) = zdtsw(1:ngrid,1:nlayer)
	2566	comm_HR_LW(1:ngrid,1:nlayer) = zdtlw(1:ngrid,1:nlayer)
[2019]	2567	if ((tracer).and.(water)) then
	2568	comm_CLOUDFRAC(1:ngrid,1:nlayer)=cloudfrac(1:ngrid,1:nlayer)
	2569	comm_TOTCLOUDFRAC(1:ngrid)=totcloudfrac(1:ngrid)
	2570	comm_RAIN(1:ngrid,1:nlayer)=zdqrain(1:ngrid,1:nlayer,igcm_h2o_vap)
	2571	comm_SURFRAIN(1:ngrid)=zdqsrain(1:ngrid)
	2572	comm_SNOW(1:ngrid,1:nlayer)=zdqrain(1:ngrid,1:nlayer,igcm_h2o_ice)
	2573	comm_ALBEQ(1:ngrid)=albedo_equivalent(1:ngrid)
	2574	comm_H2OICE_REFF(1:ngrid,1:nlayer)=reffrad(1:ngrid,1:nlayer,iaero_h2o)
	2575	comm_REEVAP(1:ngrid)=reevap_precip(1:ngrid)
	2576	endif
[1836]	2577	comm_FLUXTOP_DN(1:ngrid)=fluxtop_dn(1:ngrid)
	2578	comm_FLUXABS_SW(1:ngrid)=fluxabs_sw(1:ngrid)
	2579	comm_FLUXTOP_LW(1:ngrid)=fluxtop_lw(1:ngrid)
	2580	comm_FLUXSURF_SW(1:ngrid)=fluxsurf_sw(1:ngrid)
	2581	comm_FLUXSURF_LW(1:ngrid)=fluxsurf_lw(1:ngrid)
	2582	comm_FLXGRD(1:ngrid)=fluxgrd(1:ngrid)
	2583	comm_LSCEZ(1:ngrid,1:nlayer)=lscaledEz(1:ngrid,1:nlayer)
	2584	sensibFlux(1:ngrid) = zflubid(1:ngrid) - capcal(1:ngrid)*zdtsdif(1:ngrid) !!! ????
[2019]	2585
	2586	if (turb_resolved) then
	2587	open(17,file='lsf.txt',form='formatted',status='old')
	2588	rewind(17)
	2589	DO l=1,nlayer
	2590	read(17,*) lsf_dt(l),lsf_dq(l)
	2591	ENDDO
	2592	close(17)
	2593	do ig=1,ngrid
	2594	if ((tracer).and.(water)) then
	2595	pdq(ig,:,igcm_h2o_vap) = pdq(ig,:,igcm_h2o_vap) + lsf_dq(:)
	2596	endif
	2597	pdt(ig,:) = pdt(ig,:) + lsf_dt(:)
	2598	comm_HR_DYN(ig,:) = lsf_dt(:)
	2599	enddo
	2600	endif
[1836]	2601	#endif
	2602
[1622]	2603	! XIOS outputs
	2604	#ifdef CPP_XIOS
	2605	! Send fields to XIOS: (NB these fields must also be defined as
	2606	! <field id="..." /> in context_lmdz_physics.xml to be correctly used)
[1626]	2607	CALL send_xios_field("ls",zls)
	2608
[1622]	2609	CALL send_xios_field("ps",ps)
	2610	CALL send_xios_field("area",cell_area)
[2060]	2611
[1622]	2612	CALL send_xios_field("temperature",zt)
	2613	CALL send_xios_field("u",zu)
	2614	CALL send_xios_field("v",zv)
[1877]	2615	CALL send_xios_field("omega",omega)
[2060]	2616
[2114]	2617	IF (calltherm) THEN
[2176]	2618	CALL send_xios_field('w_plm',zw2_bis)
[2232]	2619	CALL send_xios_field('entr',entr)
	2620	CALL send_xios_field('detr',detr)
	2621	! CALL send_xios_field('fm',fm_bis)
	2622	! CALL send_xios_field('fraca',fraca)
[2114]	2623	ENDIF
[2127]	2624
[2114]	2625	IF (water) THEN
	2626	CALL send_xios_field('h2o_vap',zq(:,:,igcm_h2o_vap))
	2627	CALL send_xios_field('h2o_ice',zq(:,:,igcm_h2o_ice))
	2628	ENDIF
	2629
[1877]	2630	CALL send_xios_field("ISR",fluxtop_dn)
	2631	CALL send_xios_field("OLR",fluxtop_lw)
[2733]	2632	CALL send_xios_field("ASR",fluxabs_sw)
[2734]	2633
	2634	if (specOLR .and. corrk) then
	2635	call send_xios_field("OLR3D",OLR_nu)
	2636	call send_xios_field("IR_Bandwidth",DWNI)
	2637	call send_xios_field("VI_Bandwidth",DWNV)
	2638	call send_xios_field("OSR3D",OSR_nu)
	2639	call send_xios_field("GSR3D",GSR_nu)
	2640	endif
	2641
[1682]	2642	if (lastcall.and.is_omp_master) then
	2643	write(,) "physiq: call xios_context_finalize"
	2644	call xios_context_finalize
	2645	endif
[1622]	2646	#endif
[2060]	2647
[2663]	2648	if (check_physics_outputs) then
	2649	! Check the validity of updated fields at the end of the physics step
	2650	call check_physics_fields("end of physiq:", zt, zu, zv, pplev, zq)
	2651	endif
	2652
[253]	2653	icount=icount+1
[2060]	2654
	2655	end subroutine physiq
	2656
	2657	end module physiq_mod

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