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2 | \catcode`:\active |
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3 | \catcode`;\active |
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4 | \catcode`!\active |
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5 | \catcode`?\active |
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6 | \bibstyle{abbrv} |
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7 | \select@language{english} |
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8 | \@writefile{toc}{\select@language{english}} |
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9 | \@writefile{lof}{\select@language{english}} |
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11 | \select@language{english} |
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12 | \@writefile{toc}{\select@language{english}} |
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13 | \@writefile{lof}{\select@language{english}} |
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14 | \@writefile{lot}{\select@language{english}} |
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15 | \@writefile{toc}{\contentsline {chapter}{\numberline {1}Introduction}{3}} |
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16 | \@writefile{lof}{\addvspace {10\p@ }} |
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17 | \@writefile{lot}{\addvspace {10\p@ }} |
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18 | \select@language{english} |
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19 | \@writefile{toc}{\select@language{english}} |
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20 | \@writefile{lof}{\select@language{english}} |
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21 | \@writefile{lot}{\select@language{english}} |
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22 | \@writefile{toc}{\contentsline {chapter}{\numberline {2}Main features of the model}{4}} |
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23 | \@writefile{lof}{\addvspace {10\p@ }} |
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24 | \@writefile{lot}{\addvspace {10\p@ }} |
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25 | \newlabel{sc:apercu}{{2}{4}} |
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26 | \@writefile{toc}{\contentsline {section}{\numberline {2.1}Basic principles}{4}} |
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27 | \@writefile{toc}{\contentsline {section}{\numberline {2.2}Dynamical-Physical separation}{4}} |
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28 | \@writefile{lof}{\contentsline {figure}{\numberline {2.1}{\ignorespaces Physical/dynamical interface}}{5}} |
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29 | \newlabel{fg:fidyn}{{2.1}{5}} |
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30 | \@writefile{toc}{\contentsline {section}{\numberline {2.3}Grid boxes:}{5}} |
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31 | \@writefile{toc}{\contentsline {subsection}{\numberline {2.3.1}Horizontal grids}{5}} |
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32 | \@writefile{lof}{\contentsline {figure}{\numberline {2.2}{\ignorespaces Dynamical and physical grids for a 6 $\times $ 7 horizontal resolution. In the dynamics (but not in the physics) winds u and v are on specific staggered grids. Other dynamical variables are on the dynamical ``scalar'' grid. The physics uses the same ``scalar'' grid for all the variables, except that nodes are indexed in a single vector containing NGRID=2+(JM-1)$\times $IM points when counting from the north pole. N.B.: In the Fortran program, the following variables are used: {\tt iim=IM , iip1=IM+1, jjm=JM , jjp1=JM+1}.}}{6}} |
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33 | \newlabel{fg:grid}{{2.2}{6}} |
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34 | \@writefile{toc}{\contentsline {subsection}{\numberline {2.3.2}Vertical grids}{7}} |
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35 | \@writefile{lof}{\contentsline {figure}{\numberline {2.3}{\ignorespaces hybrides}}{7}} |
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36 | \newlabel{fg:hybrid}{{2.3}{7}} |
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37 | \@writefile{lof}{\contentsline {figure}{\numberline {2.4}{\ignorespaces Vertical grid description of the {\tt llm (or nlayer)} atmospheric layers in the programming code ({\tt llm} is the variable used in the dynamical part, and {\tt nlayer} is used in the physical part). Variables {\tt ap, bp} and {\tt aps, bps} indicate the hybrid levels at the interlayer levels and at middle of the layers respectively. Pressure at the interlayer is $Plev(l)=ap(l)+bp(l) \times Ps$ and pressure in the middle of the layer is defined by $Play(l)=aps(l)+bps(l) \times Ps$, (where $Ps$ is surface pressure). Sigma coordinates are merely a specific case of hybrid coordinates such that $aps=0$ and $bps=P/Ps$. Note that for the hybrid coordinates, $bps=0$ above $\sim 50$~km, leading to purely pressure levels. The user can choose whether to run the model using hybrid coordinates or not by setting variable {\tt hybrid} in run.def to True or False.}}{8}} |
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38 | \newlabel{fg:sigma}{{2.4}{8}} |
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39 | \@writefile{toc}{\contentsline {section}{\numberline {2.4}Variables used in the model}{9}} |
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40 | \@writefile{toc}{\contentsline {subsection}{\numberline {2.4.1}Dynamical variables}{9}} |
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41 | \@writefile{toc}{\contentsline {subsection}{\numberline {2.4.2}Physical variables}{9}} |
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42 | \@writefile{toc}{\contentsline {subsection}{\numberline {2.4.3}Tracers}{10}} |
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43 | \citation{Holt:79} |
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44 | \citation{LeVa:89} |
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45 | \citation{Arak:77} |
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46 | \@writefile{toc}{\contentsline {chapter}{\numberline {3}3D Dynamical Code}{11}} |
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47 | \@writefile{lof}{\addvspace {10\p@ }} |
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48 | \@writefile{lot}{\addvspace {10\p@ }} |
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49 | \newlabel{sc:dynamic}{{3}{11}} |
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50 | \@writefile{toc}{\contentsline {section}{\numberline {3.1}Discretisation of the dynamical equations}{11}} |
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51 | \@writefile{toc}{\contentsline {paragraph}{la pression extensive:}{11}} |
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52 | \@writefile{lof}{\contentsline {figure}{\numberline {3.1}{\ignorespaces Grille obtenue avec 96 points en longitude et 73 en latitude et un zoom d'un facteur 3 centr\'e sur la m\'edit\'erann\'ee (grille utilis\'ee au laboratoire par Ali Harzallah)}}{12}} |
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53 | \newlabel{fg:zoom}{{3.1}{12}} |
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54 | \@writefile{lof}{\contentsline {figure}{\numberline {3.2}{\ignorespaces Disposition des variables dans la grille du LMD}}{13}} |
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55 | \newlabel{fg:grille}{{3.2}{13}} |
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56 | \@writefile{toc}{\contentsline {paragraph}{les trois composantes du flux de masse:}{13}} |
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57 | \@writefile{toc}{\contentsline {paragraph}{le facteur de Coriolis multipli\'e par l'aire de la maille:}{13}} |
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58 | \@writefile{toc}{\contentsline {paragraph}{la vorticit\'e potentielle absolue:}{13}} |
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59 | \@writefile{toc}{\contentsline {paragraph}{l'\'energie cin\'etique}{13}} |
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60 | \@writefile{toc}{\contentsline {paragraph}{\'equations du mouvement:}{13}} |
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61 | \newlabel{eq:u1}{{3.5}{13}} |
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62 | \newlabel{eq:v1}{{3.6}{13}} |
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63 | \@writefile{toc}{\contentsline {paragraph}{\'equation thermodynamique:}{14}} |
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64 | \newlabel{eq:thermo}{{3.7}{14}} |
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65 | \@writefile{toc}{\contentsline {paragraph}{\'equation hydrostatique:}{14}} |
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66 | \@writefile{toc}{\contentsline {paragraph}{\'equations de continuit\'e:}{14}} |
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67 | \newlabel{eq:cont1}{{3.9}{14}} |
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68 | \newlabel{eq:cont2}{{3.10}{14}} |
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69 | \@writefile{toc}{\contentsline {section}{\numberline {3.2}High latitude filters}{14}} |
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70 | \@writefile{toc}{\contentsline {section}{\numberline {3.3}Dissipation}{14}} |
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71 | \@writefile{toc}{\contentsline {section}{\numberline {3.4}Sponge layer}{15}} |
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72 | \citation{Forg:99} |
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73 | \citation{Forg:99} |
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74 | \citation{Lewi:99} |
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75 | \@writefile{toc}{\contentsline {chapter}{\numberline {4}Physical parameterizations of the generic model: some references}{16}} |
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76 | \@writefile{lof}{\addvspace {10\p@ }} |
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77 | \@writefile{lot}{\addvspace {10\p@ }} |
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78 | \newlabel{sc:phystd}{{4}{16}} |
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79 | \@writefile{toc}{\contentsline {section}{\numberline {4.1}General}{16}} |
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80 | \@writefile{toc}{\contentsline {paragraph}{General references:}{16}} |
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81 | \@writefile{toc}{\contentsline {section}{\numberline {4.2}Radiative transfer}{16}} |
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82 | \@writefile{toc}{\contentsline {subsection}{\numberline {4.2.1}\bf Absorption/emission and diffusion by dust:}{16}} |
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83 | \citation{Toon:89} |
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84 | \citation{Forg:98grl} |
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85 | \citation{Fouq:80} |
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86 | \citation{Ocke:97} |
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87 | \citation{Clan:91} |
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88 | \citation{Hour:93} |
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89 | \citation{Forg:98} |
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90 | \citation{Hour:99} |
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91 | \citation{Mont:04jgr} |
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92 | \@writefile{toc}{\contentsline {section}{\numberline {4.3}Subgrid atmospheric dynamical processes}{17}} |
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93 | \@writefile{toc}{\contentsline {subsection}{\numberline {4.3.1}Turbulent diffusion in the upper layer}{17}} |
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94 | \@writefile{toc}{\contentsline {subsection}{\numberline {4.3.2}Convection}{17}} |
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95 | \@writefile{toc}{\contentsline {section}{\numberline {4.4}Surface thermal conduction}{17}} |
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96 | \@writefile{toc}{\contentsline {section}{\numberline {4.5}CO$_2$ Condensation}{17}} |
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97 | \@writefile{toc}{\contentsline {section}{\numberline {4.6}Tracer transport and sources}{17}} |
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98 | \@writefile{toc}{\contentsline {chapter}{\numberline {5}Running the model: a practice simulation}{19}} |
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99 | \@writefile{lof}{\addvspace {10\p@ }} |
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100 | \@writefile{lot}{\addvspace {10\p@ }} |
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101 | \newlabel{loc:contact1}{{5}{19}} |
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102 | \@writefile{toc}{\contentsline {section}{\numberline {5.1}Installing the model from SVN}{19}} |
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103 | \@writefile{toc}{\contentsline {section}{\numberline {5.2}Installing the model without SVN}{21}} |
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104 | \@writefile{toc}{\contentsline {section}{\numberline {5.3}Compiling the model}{21}} |
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105 | \newlabel{sc:run1}{{5.3}{21}} |
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106 | \@writefile{toc}{\contentsline {section}{\numberline {5.4}Input files (initial states and def files)}{22}} |
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107 | \@writefile{toc}{\contentsline {section}{\numberline {5.5}Running the model}{22}} |
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108 | \@writefile{lof}{\contentsline {figure}{\numberline {5.1}{\ignorespaces Input/output data}}{23}} |
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109 | \newlabel{fig:inout}{{5.1}{23}} |
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110 | \@writefile{toc}{\contentsline {section}{\numberline {5.6}Visualizing the output files}{24}} |
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111 | \@writefile{toc}{\contentsline {subsection}{\numberline {5.6.1}Using GrAds to visualize outputs}{24}} |
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112 | \newlabel{loc:visu}{{5.6.1}{24}} |
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113 | \@writefile{toc}{\contentsline {section}{\numberline {5.7}Resuming a simulation}{25}} |
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114 | \@writefile{toc}{\contentsline {section}{\numberline {5.8}Chain simulations}{25}} |
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115 | \@writefile{toc}{\contentsline {section}{\numberline {5.9}Creating and modifying initial states}{25}} |
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116 | \newlabel{sc:newstart}{{5.9}{25}} |
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117 | \@writefile{toc}{\contentsline {subsection}{\numberline {5.9.1}Using program ``newstart''}{25}} |
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118 | \@writefile{toc}{\contentsline {subsection}{\numberline {5.9.2}Creating the initial start\_archive.nc file }{27}} |
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119 | \@writefile{toc}{\contentsline {subsection}{\numberline {5.9.3}Changing the horizontal or vertical grid resolution}{27}} |
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120 | \@writefile{toc}{\contentsline {chapter}{\numberline {6}Program organization and compilation script}{28}} |
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121 | \@writefile{lof}{\addvspace {10\p@ }} |
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122 | \@writefile{lot}{\addvspace {10\p@ }} |
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123 | \newlabel{sc:info}{{6}{28}} |
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124 | \newlabel{loc:contenu}{{6}{28}} |
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125 | \@writefile{toc}{\contentsline {section}{\numberline {6.1}Organization of the model source files}{28}} |
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126 | \@writefile{toc}{\contentsline {section}{\numberline {6.2}Programming}{29}} |
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127 | \@writefile{toc}{\contentsline {section}{\numberline {6.3}Model organization}{29}} |
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128 | \@writefile{toc}{\contentsline {section}{\numberline {6.4}Compiling the model}{29}} |
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129 | \newlabel{sc:compil1}{{6.4}{29}} |
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130 | \@writefile{lof}{\contentsline {figure}{\numberline {6.1}{\ignorespaces Organigram of subroutine function physiq.F90}}{30}} |
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131 | \newlabel{fg:organi_phys}{{6.1}{30}} |
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132 | \@writefile{toc}{\contentsline {paragraph}{Help manual for the makegcm script}{31}} |
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133 | \@writefile{toc}{\contentsline {chapter}{\numberline {7}Input/Output}{33}} |
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134 | \@writefile{lof}{\addvspace {10\p@ }} |
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135 | \@writefile{lot}{\addvspace {10\p@ }} |
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136 | \newlabel{sc:io}{{7}{33}} |
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137 | \@writefile{toc}{\contentsline {section}{\numberline {7.1}NetCDF format}{33}} |
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138 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.1.1}NetCDF file editor: ncdump}{33}} |
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139 | \@writefile{toc}{\contentsline {paragraph}{Main commands for ncdump}{33}} |
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140 | \@writefile{lof}{\contentsline {figure}{\numberline {7.1}{\ignorespaces Example of temperature data (in this case for present-day Mars) at a given time using GrADS visualization}}{34}} |
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141 | \newlabel{fg:grads}{{7.1}{34}} |
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142 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.1.2}Graphic visualization of the NetCDF files using GrAds}{34}} |
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143 | \@writefile{toc}{\contentsline {section}{\numberline {7.2}Input and parameter files}{34}} |
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144 | \newlabel{loc:entrees}{{7.2}{34}} |
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145 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.2.1}run.def}{35}} |
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146 | \newlabel{vb:run.def}{{7.2.1}{35}} |
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147 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.2.2}callphys.def}{37}} |
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148 | \newlabel{sc:callphys.def}{{7.2.2}{37}} |
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149 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.2.3}traceur.def}{39}} |
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150 | \newlabel{sc:traceur.def}{{7.2.3}{39}} |
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151 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.2.4}z2sig.def}{39}} |
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152 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.2.5}Initialization files: start and startfi}{40}} |
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153 | \@writefile{lof}{\contentsline {figure}{\numberline {7.2}{\ignorespaces Organization of NetCDF files }}{41}} |
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154 | \newlabel{fg:netcdf}{{7.2}{41}} |
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155 | \@writefile{toc}{\contentsline {paragraph}{Physical and dynamical headers}{43}} |
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156 | \@writefile{toc}{\contentsline {paragraph}{Surface conditions}{43}} |
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157 | \@writefile{toc}{\contentsline {paragraph}{Physical and dynamical state variables}{43}} |
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158 | \@writefile{toc}{\contentsline {paragraph}{The ``control'' array}{44}} |
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159 | \@writefile{toc}{\contentsline {section}{\numberline {7.3}Output files}{46}} |
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160 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.3.1}NetCDF restart files - restart.nc and restartfi.nc}{46}} |
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161 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.3.2} NetCDF file - diagfi.nc}{46}} |
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162 | \@writefile{toc}{\contentsline {subsection}{\numberline {7.3.3}Stats files}{47}} |
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163 | \@writefile{toc}{\contentsline {chapter}{\numberline {8}Water Cycle Simulation}{51}} |
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164 | \@writefile{lof}{\addvspace {10\p@ }} |
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165 | \@writefile{lot}{\addvspace {10\p@ }} |
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166 | \newlabel{sc:water}{{8}{51}} |
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167 | \@writefile{toc}{\contentsline {chapter}{\numberline {9}1D version of the generic model}{54}} |
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168 | \@writefile{lof}{\addvspace {10\p@ }} |
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169 | \@writefile{lot}{\addvspace {10\p@ }} |
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170 | \newlabel{sc:rcm1d}{{9}{54}} |
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171 | \@writefile{toc}{\contentsline {section}{\numberline {9.1}Compilation}{54}} |
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172 | \@writefile{toc}{\contentsline {section}{\numberline {9.2}1-D runs and input files}{54}} |
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173 | \@writefile{toc}{\contentsline {section}{\numberline {9.3}Output data}{56}} |
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174 | \@writefile{toc}{\contentsline {chapter}{\numberline {10}Zoomed simulations}{57}} |
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175 | \@writefile{lof}{\addvspace {10\p@ }} |
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176 | \@writefile{lot}{\addvspace {10\p@ }} |
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177 | \newlabel{sc:zoom}{{10}{57}} |
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178 | \@writefile{toc}{\contentsline {section}{\numberline {10.1}To define the zoomed area}{57}} |
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179 | \@writefile{toc}{\contentsline {section}{\numberline {10.2}Making a zoomed initial state}{57}} |
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180 | \@writefile{toc}{\contentsline {section}{\numberline {10.3}Running a zoomed simulation and stability issue}{58}} |
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181 | \@writefile{toc}{\contentsline {chapter}{\numberline {11}Changing the radiative transfer properties}{59}} |
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182 | \@writefile{lof}{\addvspace {10\p@ }} |
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183 | \@writefile{lot}{\addvspace {10\p@ }} |
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184 | \newlabel{sc:kspectrum}{{11}{59}} |
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185 | \@writefile{toc}{\contentsline {section}{\numberline {11.1}Producing the high-resolution data}{59}} |
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186 | \@writefile{toc}{\contentsline {section}{\numberline {11.2}Performing the correlated-k conversion}{60}} |
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187 | \bibdata{newfred.bib} |
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188 | \@writefile{toc}{\contentsline {section}{\numberline {11.3}Implementing the absorption data in the GCM}{61}} |
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189 | \bibstyle{plain} |
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