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source: trunk/LMDZ.COMMON/makelmdz_fcm @ 2757

Last change on this file since 2757 was 2645, checked in by emillour, 3 years ago
Common Dynamics: Minor improvement in makelmdz_fcm: rename internal variable "INCLUDE" as "INCLUDE_DIR" to avoid collisions with environment variable "INCLUDE" present on some systems. EM
File size: 22.1 KB

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1	#!/bin/bash
2	# $Id: makelmdz_fcm 1615 2012-02-10 15:42:26Z emillour $
3	# This is a script in Bash to compile the GCM and related tools
4	#
5	##set -x
6	set -e
7	########################################################################
8	# options par defaut pour la commande make
9	########################################################################
10
11	dim="96x72x19"
12	physique=lmd
13	filtre=filtrez
14	grille=reg
15	couple=false
16	veget=false
17	sisvat=false
18	rrtm=false
19	dust=false
20	strataer=false
21	chimie=false
22	chemistry=false
23	parallel=none
24	paramem="par"
25	compil_mod=prod
26	io=ioipsl
27	LIBPREFIX=""
28	cosp=false
29	bands=""
30	scatterers=""
31	job=1
32	full=''
33	libphy=false
34
35	arch_defined="FALSE"
36	arch_path="arch"
37	arch_default_path="arch"
38
39	LMDGCM=`/bin/pwd`
40	LIBOGCM=$LMDGCM/libo
41	LIBFGCM=$LMDGCM/libf
42	DYN_COMMON_PATH=$LIBFGCM/dyn3d_common
43	# path for optional packages, but default set to ".void_dir"
44	FILTRE_PATH=$LMDGCM/.void_dir
45	DYN_PHYS_PATH=$LMDGCM/.void_dir
46	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
47	PHY_COMMON_PATH=$LMDGCM/.void_dir
48	RRTM_PATH=$LMDGCM/.void_dir
49	DUST_PATH=$LMDGCM/.void_dir
50	STRATAER_PATH=$LMDGCM/.void_dir
51	SISVAT_PATH=$LMDGCM/.void_dir
52	COSP_PATH=$LMDGCM/.void_dir
53	CHEM_PATH=$LMDGCM/.void_dir
54	CLOUD_PATH=$LMDGCM/.void_dir
55	MUPHY_PATH=$LMDGCM/.void_dir
56	AERONO_PATH=$LMDGCM/.void_dir
57	# Path to fcm utility:
58	##fcm_path=$LMDGCM/tools/fcm/bin
59	##fcm_path=/planeto/mturbet/planeto2-mturbet/FCM_V1.2/bin
60	fcm_path=$(dirname $(which fcm))
61
62	########################################################################
63	# Quelques initialisations de variables du shell.
64	########################################################################
65
66	CPP_KEY=""
67	INCLUDE_DIR=""
68	LIB=""
69	adjnt=""
70	COMPIL_FFLAGS="%PROD_FFLAGS"
71	PARA_FFLAGS=""
72	PARA_LD=""
73	EXT_SRC=""
74
75	########################################################################
76	# lecture des options de mymake
77	########################################################################
78
79	while (($# > 0))
80	do
81	case $1 in
82	"-h") cat <<fin
83	Usage :
84	makelmdz_fcm [options] -arch arch_name exec
85	[-h] : brief help
86	[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim)
87	[-s nscat] : (Generic) Number of radiatively active scatterers
88	[-b IRxVIS] : (Generic) Number of infrared (IR) and visible (VIS) bands for radiative transfer
89	[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
90	[-prod / -dev / -debug] : compilation mode production (default) / developement / debug .
91	[-c false/MPI1/OMCT] : (Earth) coupling with ocean model : MPI1/OMCT/false (default: false)
92	[-v false/orchidee2.0/orchidee1.9/true] : (Earth) version of the vegetation model to include (default: false)
93	false : no vegetation model
94	orchidee2.0 : compile using ORCHIDEE 2.0 (or more recent version)
95	orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
96	true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
97	[-chimie INCA/false] : (Earth) with INCA chemistry model or without (default: false)
98	[-cosp true/false] : (Earth) add the cosp model (default: false)
99	[-sisvat true/false] : (Earth) compile with/without sisvat package (default: false)
100	[-rrtm true/false] : (Earth) compile with/without rrtm package (default: false)
101	[-dust true/false] : (Earth) compile with/without the dust package by Boucher and co (default: false)
102	[-strataer true/false] : (Earth) compile with/without the strat aer package by Boucher and co (default: false)
103	[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
104	[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
105	[-io ioipsl/mix/xios] : Input/Output library (default: ioipsl)
106	[-include INCLUDES] : extra include path to add
107	[-cpp CPP_KEY] : additional preprocessing definitions
108	[-adjnt] : adjoint model, not operational ...
109	[-mem] : reduced memory dynamics (if in parallel mode)
110	[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
111	[-link LINKS] : additional links with other libraries
112	[-j n] : active parallel compiling on ntask
113	[-full] : full (re-)compilation (from scratch)
114	[-libphy] : only compile physics package (no dynamics or main program)
115	[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
116	[-ext_src path] : path to an additional set of routines to compile with the model
117	[-arch_path path] : path to architecture files (default: $arch_default_path)
118	-arch arch : target architecture
119	exec : executable to build
120	fin
121	exit;;
122
123	"-d")
124	dim=$2 ; shift ; shift ;;
125
126	"-p")
127	physique="$2" ; shift ; shift ;;
128
129	"-s")
130	scatterers=$2 ; shift ; shift ;;
131
132	"-b")
133	bands=$2 ; shift ; shift ;;
134
135	"-g")
136	grille="$2" ; shift ; shift ;;
137
138	"-c")
139	couple="$2" ; shift ; shift ;;
140
141	"-prod")
142	compil_mod="prod" ; shift ;;
143
144	"-dev")
145	compil_mod="dev" ; shift ;;
146
147	"-debug")
148	compil_mod="debug" ; shift ;;
149
150	"-io")
151	io="$2" ; shift ; shift ;;
152
153	"-v")
154	veget="$2" ; shift ; shift ;;
155
156	"-sisvat")
157	sisvat="$2" ; shift ; shift ;;
158
159	"-rrtm")
160	rrtm="$2" ; shift ; shift ;;
161
162	"-dust")
163	dust="$2" ; shift ; shift ;;
164
165	"-strataer")
166	strataer="$2" ; shift ; shift ;;
167
168	"-chimie")
169	chimie="$2" ; shift ; shift ;;
170
171	"-parallel")
172	parallel="$2" ; shift ; shift ;;
173
174	"-include")
175	INCLUDE_DIR="$INCLUDE_DIR -I$2" ; shift ; shift ;;
176
177	"-cpp")
178	CPP_KEY="$CPP_KEY $2" ; shift ; shift ;;
179
180	"-adjnt")
181	echo "not operational ... work to be done here ";exit
182	opt_dep="$opt_dep adjnt" ; adjnt="-ladjnt -ldyn3d "
183	optim="$optim -Dadj" ; shift ;;
184
185	"-cosp")
186	cosp="$2" ; shift ; shift ;;
187
188	"-mem")
189	paramem="mem" ; shift ;;
190
191	"-filtre")
192	filtre=$2 ; shift ; shift ;;
193
194	"-link")
195	LIB="$LIB $2" ; shift ; shift ;;
196
197	"-fcm_path")
198	fcm_path=$2 ; shift ; shift ;;
199
200	"-ext_src")
201	EXT_SRC=$2 ; shift ; shift ;;
202
203	"-j")
204	job=$2 ; shift ; shift ;;
205
206	"-full")
207	full="-full" ; shift ;;
208
209	"-libphy")
210	libphy="true" ; shift ;;
211
212	"-arch")
213	arch=$2 ; arch_defined="TRUE" ; shift ; shift ;;
214
215	"-arch_path")
216	arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;;
217
218	*)
219	code="$1" ; shift ;;
220	esac
221	done
222
223	###############################################################
224	# path to fcm
225	###############################################################
226	# handle case when provided path to fcm was given as a relative
227	# path (from makelmdz_fcm script directory) and not an absolute path
228	if [[ ${fcm_path:0:1} != "/" ]] ; then
229	# prepend with makelmdz_fcm location
230	fcm_path=$(cd $(dirname $0) ; pwd)"/"${fcm_path}
231	fi
232
233	# add fcm_path to PATH
234	export PATH=${fcm_path}:${PATH}
235
236	echo "Path to fcm:"
237	echo ${fcm_path}
238
239	#################################
240	# setup arch.env and arch.path #
241	#################################
242	rm -f .void_file
243	echo > .void_file
244	rm -rf .void_dir
245	mkdir .void_dir
246
247	if [[ "$arch_defined" == "TRUE" ]]
248	then
249	rm -f arch.path
250	rm -f arch.env
251
252	if test -f $arch_path/arch-${arch}.path
253	then
254	ln -s $arch_path/arch-${arch}.path arch.path
255	elif test -f $arch_default_path/arch-${arch}.path
256	then
257	ln -s $arch_default_path/arch-${arch}.path arch.path
258	fi
259
260	if test -f $arch_path/arch-${arch}.env
261	then
262	ln -s $arch_path/arch-${arch}.env arch.env
263	elif test -f $arch_default_path/arch-${arch}.env
264	then
265	ln -s $arch_default_path/arch-${arch}.env arch.env
266	else
267	ln -s .void_file arch.env
268	fi
269	# source architecture PATH and ENV files
270	source arch.env
271	source arch.path
272	else
273	echo "You must define a target architecture"
274	exit 1
275	fi
276
277	########################################################################
278	# Definition des clefs CPP, des chemins des includes et modules
279	# et des libraries
280	########################################################################
281
282	if [[ "$compil_mod" == "prod" ]]
283	then
284	COMPIL_FFLAGS="%PROD_FFLAGS"
285	elif [[ "$compil_mod" == "dev" ]]
286	then
287	COMPIL_FFLAGS="%DEV_FFLAGS"
288	elif [[ "$compil_mod" == "debug" ]]
289	then
290	COMPIL_FFLAGS="%DEBUG_FFLAGS"
291	fi
292
293	phys_root=$physique
294	if [[ "${physique:0:3}" == "lmd" ]] ; then phys_root=lmd ; fi
295	if [[ "${physique:0:3}" == "mar" ]] ; then phys_root=mar ; fi
296	if [[ "${physique:0:4}" == "mars" ]] ; then phys_root=mars ; fi
297	if [[ "${physique:0:3}" == "std" ]] ; then phys_root=std ; fi
298	if [[ "${physique:0:5}" == "venus" ]] ; then phys_root=venus ; fi
299	if [[ "${physique:0:5}" == "titan" ]] ; then phys_root=titan ; fi
300	if [[ "${physique:0:3}" == "dev" ]] ; then phys_root=dev ; fi
301
302	if [[ "$physique" != "nophys" ]]
303	then
304	#We'll use some physics
305	CPP_KEY="$CPP_KEY CPP_PHYS"
306	if [[ "${phys_root}" == "lmd" ]]
307	then
308	#For lmd physics, default planet type is Earth
309	CPP_KEY="$CPP_KEY CPP_EARTH"
310	fi
311	# set physics common utilities path
312	PHY_COMMON_PATH="${LIBFGCM}/phy_common"
313	# set the dyn/phys interface path
314	DYN_PHYS_PATH="${LIBFGCM}/dynphy_lonlat"
315	DYN_PHYS_SUB_PATH="${LIBFGCM}/dynphy_lonlat/phy${phys_root}"
316	fi
317
318	if [[ "$filtre" == "filtrez" ]]
319	then
320	FILTRE_PATH=${LIBFGCM}/$filtre
321	fi
322
323	if [[ "$chimie" == "INCA" ]]
324	then
325	CPP_KEY="$CPP_KEY INCA"
326	INCLUDE_DIR="$INCLUDE_DIR -I${INCA_INCDIR}"
327	LIB="$LIB -L${INCA_LIBDIR} ${INCA_LIB}"
328	fi
329
330	if [[ "$couple" != "false" ]]
331	then
332	if [[ "$couple" == "MPI1" ]]
333	then
334	CPP_KEY="$CPP_KEY CPP_COUPLE"
335	export OASIS_INCDIR=$LMDGCM/../../prism/X64/build/lib/psmile.MPI1
336	export OASIS_LIBDIR=$LMDGCM/../../prism/X64/lib
337	INCLUDE_DIR="$INCLUDE_DIR -I${OASIS_INCDIR}"
338	LIB="$LIB -L${OASIS_LIBDIR} ${OASIS_LIB}"
339	else
340	CPP_KEY="$CPP_KEY CPP_COUPLE CPP_OMCT"
341	INCLUDE_DIR="$INCLUDE_DIR -I${OASIS_INCDIR}"
342	LIB="$LIB -L${OASIS_LIBDIR} ${OASIS_LIB}"
343	fi
344	fi
345
346	if [[ "$parallel" != "none" && \
347	( "$code" == "newstart" \|\| "$code" == "start2archive" ) ]]
348	then
349	echo "newstart or start2archive utilities should be run in serial!"
350	echo " Compile without -parallel [mpi\|omp\|mpi_omp] option!"
351	exit
352	fi
353
354	if [[ "$parallel" == "mpi" ]]
355	then
356	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI"
357	PARA_FFLAGS="%MPI_FFLAGS"
358	PARA_LD="%MPI_LD"
359	elif [[ "$parallel" == "omp" ]]
360	then
361	CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP"
362	PARA_FFLAGS="%OMP_FFLAGS"
363	PARA_LD="%OMP_LD"
364	elif [[ "$parallel" == "mpi_omp" ]]
365	then
366	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP"
367	PARA_FFLAGS="%MPI_FFLAGS %OMP_FFLAGS"
368	PARA_LD="%MPI_LD %OMP_LD"
369	fi
370
371	if [[ ( "$parallel" == "omp" \|\| "$parallel" == "mpi_omp" ) \
372	&& "$compil_mod" == "debug" ]]
373	then
374	echo "Usually, parallelization with OpenMP requires some optimization."
375	echo "We suggest switching to \"-dev\"."
376	fi
377
378	if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" ]
379	then
380	#NB: option 'true': for backward compatibility. To be used with ORCHIDEE tag 1.9-1.9.6
381	# For this case, cpp flag ORCHIDEE_NOOPENMP must be added to the makelmdz_fcm arguments
382	# option orchidee1.9 : Compile with ORCHIDEE version up to the inclusion of OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
383	INCLUDE_DIR="${INCLUDE_DIR} ${ORCHIDEE_INCDIR}"
384	CPP_KEY="$CPP_KEY CPP_VEGET"
385	# temporary, for Orchidee versions 1.9.* (before openmp activation)
386	if [[ "$veget" == "orchidee1.9" ]] ; then
387	CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP"
388	fi
389	if [[ "$veget" == "orchidee2.0" ]] ; then
390	orch_libs="sechiba parameters stomate parallel orglob orchidee"
391	else
392	orch_libs="sechiba parameters stomate parallel orglob"
393	fi
394	LIB="${LIB} -L${ORCHIDEE_LIBDIR} ${ORCHIDEE_LIB}"
395	elif [[ "$veget" != "false" ]] ; then
396	echo "Option -v $veget does not exist"
397	echo "Use ./makelmdz_fcm -h for more information"
398	exit
399	fi
400
401	if [[ "$sisvat" == "true" ]]
402	then
403	CPP_KEY="$CPP_KEY CPP_SISVAT"
404	SISVAT_PATH="$LIBFGCM/%PHYS/sisvat"
405	fi
406
407	if [[ "$rrtm" == "true" ]]
408	then
409	CPP_KEY="$CPP_KEY CPP_RRTM"
410	RRTM_PATH="$LIBFGCM/%PHYS/rrtm"
411	fi
412
413	if [[ "$dust" == "true" ]]
414	then
415	CPP_KEY="$CPP_KEY CPP_Dust"
416	DUST_PATH="$LIBFGCM/%PHYS/Dust"
417	fi
418
419	if [[ "$strataer" == "true" ]]
420	then
421	CPP_KEY="$CPP_KEY CPP_StratAer"
422	STRATAER_PATH="$LIBFGCM/%PHYS/StratAer"
423	fi
424
425	if [[ $io == ioipsl ]]
426	then
427	CPP_KEY="$CPP_KEY CPP_IOIPSL"
428	INCLUDE_DIR="$INCLUDE_DIR ${IOIPSL_INCDIR}"
429	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB}"
430	elif [[ $io == mix ]]
431	then
432	# For now, xios implies also using ioipsl
433	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS"
434	INCLUDE_DIR="$INCLUDE_DIR ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
435	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB} ${XIOS_LIBDIR} ${XIOS_LIB}"
436	elif [[ $io == xios ]]
437	then
438	# For now, xios implies also using ioipsl
439	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS CPP_IOIPSL_NO_OUTPUT"
440	INCLUDE_DIR="$INCLUDE_DIR ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
441	LIB="$LIB ${IOIPSL_LIBDIR} ${IOIPSL_LIB} ${XIOS_LIBDIR} ${XIOS_LIB}"
442	fi
443
444	if [[ "$cosp" == "true" ]]
445	then
446	CPP_KEY="$CPP_KEY CPP_COSP"
447	COSP_PATH="$LIBFGCM/cosp"
448	# LIB="${LIB} -l${LIBPREFIX}cosp"
449	fi
450
451	# for Titan (but could be used by others as well), there is also "chimtitan"
452	if [[ -d ${LIBFGCM}/chim${physique} ]]
453	then
454	CHEM_PATH="${LIBFGCM}/chim${physique}"
455	INCLUDE_DIR="$INCLUDE_DIR -I${LIBFGCM}/chim${physique}"
456	fi
457
458	# for Titan add microphysics dependencies
459	if [[ -d ${LIBFGCM}/muphy${physique} ]] ; then
460	if ! [ `echo $CPP_KEY \| grep -c "OLD_COMPILO"` -gt 0 ] ; then
461	# add muphy{physique} to the list of files to compile.
462	MUPHY_PATH="${LIBFGCM}/muphy${physique}"
463	# For Titan as we embbed some libraries with CPP keys, we define them:
464	# -DPREC={32\|64\|80} real kind precision (32: simple, 64: double, 80: extended double)
465	# -DHAVE_NC_FTN=1 (mandatory: for support of NetCDF in lintnd).
466	CPP_KEY="$CPP_KEY PREC=64 HAVE_NC_FTN=1"
467	if [[ "${physique}" == "titan" ]] ; then
468	echo "Yaahh you're about to use YAMMS in a GCM..."
469	fi
470	fi
471	fi
472
473	# for Venus (but could be used by others as well), there is also "phyvenus/cloudvenus"
474	if [[ -d ${LIBFGCM}/phy${physique}/cloud${physique} ]]
475	then
476	CLOUD_PATH="${LIBFGCM}/phy${physique}/cloud${physique}"
477	INCLUDE_DIR="$INCLUDE_DIR -I${LIBFGCM}/phy${physique}/cloud${physique}"
478	fi
479
480	# for Mars (but could be used by others as well), there is also "aeronomars"
481	if [[ -d ${LIBFGCM}/aerono${physique} ]]
482	then
483	AERONO_PATH="${LIBFGCM}/aerono${physique}"
484	INCLUDE_DIR="$INCLUDE_DIR -I${LIBFGCM}/aerono${physique}"
485	fi
486
487	# NETCDF library include/library paths
488	INCLUDE_DIR="$INCLUDE_DIR ${NETCDF_INCDIR}"
489	LIB="$LIB ${NETCDF_LIBDIR} ${NETCDF_LIB}"
490
491	########################################################################
492	# calcul du nombre de dimensions
493	########################################################################
494
495
496	dim_full=$dim
497	dim=`echo $dim \| sed -e 's/[^0-9]/ /g'`
498	set $dim
499	dimc=$#
500	echo calcul de la dimension
501	echo dim $dim
502	echo dimc $dimc
503
504
505	########################################################################
506	# Gestion des dimensions du modele.
507	# on cree ou remplace le fichier des dimensions
508	########################################################################
509
510	cd $LIBFGCM/grid
511	if [[ -f dimensions.h ]]
512	then
513	echo 'ATTENTION: vous etes sans doute en train de compiler le modele par ailleurs'
514	echo "Attendez que la premiere compilation soit terminee pour relancer la suivante."
515	echo "Si vous etes sur que vous ne compilez pas le modele par ailleurs,"
516	echo vous pouvez continuer en repondant oui.
517	echo "Voulez-vous vraiment continuer?"
518	echo ""
519	echo "WARNING: you are probably already compiling the model somewhere else."
520	echo "Wait until the first compilation is finished before launching this one."
521	echo "If you are sure that you are not compiling elsewhere, just answer "
522	echo "yes (or 'oui') to the question below to proceed."
523	echo "Do you wish to continue?"
524	read reponse
525	if [[ $reponse == "oui" \|\| $reponse == "yes" ]]
526	then
527	\rm -f $LIBFGCM/grid/dimensions.h
528	else
529	exit
530	fi
531	fi
532
533
534	cd $LIBFGCM/grid/dimension
535	./makdim $dim
536	if (($? != 0))
537	then
538	exit 1
539	fi
540
541	cat $LIBFGCM/grid/dimensions.h
542	cd $LMDGCM
543
544	if [[ "$bands" != "" ]]
545	then
546	# Generic model, recreate bands.h (IR & VIS bands for radiative transfer)
547	bands=$(echo $bands \| sed -e 's/[^0-9]/ /g')
548	cd $LIBFGCM/phy$physique/bands
549	./makbands $bands
550	cat $LIBFGCM/phy$physique/bands.h
551	cd $LMDGCM
552	fi
553
554	if [[ "$scatterers" != "" ]]
555	then
556	if [[ -f $LIBFGCM/phy$physique/scatterers/make_scatterers ]]
557	then
558	# Generic model, recreate scatterers.h
559	cd $LIBFGCM/phy$physique/scatterers
560	./make_scatterers $scatterers
561	cat $LIBFGCM/phy$physique/scatterers.h
562	cd $LMDGCM
563	else
564	echo "Error: you should not use the -s # option with -p $physique"
565	exit
566	fi
567	fi
568
569
570	########################################################################
571	# Differentes dynamiques (3d, 2d, 1d)
572	########################################################################
573
574	dimension=`echo $dim \| wc -w`
575	echo dimension $dimension
576
577	if (( $dimension == 3 ))
578	then
579	cd $LIBFGCM/grid
580	\rm fxyprim.h
581	cp -p fxy_${grille}.h fxyprim.h
582	#else
583	# echo "Probleme dans les dimensions de la dynamique !!"
584	# echo "Non reactive pour l'instant !!!"
585	fi
586
587	if (( $dimension == 1 ))
588	then
589	## Sanity check: 1D models should be used in serial
590	if [[ $parallel != "none" ]]
591	then
592	echo "Error: a 1D model should not be compiled with "
593	echo " -parallel [mpi\|omp\|mpi_omp] option!"
594	exit
595	fi
596	CPP_KEY="$CPP_KEY CPP_1D"
597	##in 1D, add dyn3d to include path (because main prog is in physics)
598	INCLUDE_DIR="$INCLUDE_DIR -Ilibf/dyn3d -Ilibf/dyn3d_common"
599	## no filtre in 1d:
600	FILTRE_PATH=$LMDGCM/.void_dir
601	## no need to compile all routines in dyn3d_common either:
602	DYN_COMMON_PATH=$LMDGCM/.void_dir
603	## no need to compile all routines in dynlmdz_phy... ;
604	## (because key ones are included in 1D main program)
605	DYN_PHYS_PATH=$LMDGCM/.void_dir
606	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
607	fi
608
609	######################################################################
610	# Traitement special pour le nouveau rayonnement de Laurent Li.
611	# ---> YM desactive pour le traitemement en parallele
612	######################################################################
613
614	#if [[ -f $libf/phy$physique/raddim.h ]]
615	#then
616	# if [[ -f $libf/phy$physique/raddim.$dimh.h ]]
617	#then
618	# \rm -f $libf/phy$physique/raddim.h
619	# cp -p $libf/phy$physique/raddim.$dimh.h $libf/phy$physique/raddim.h
620	# echo $libf/phy$physique/raddim.$dimh.h
621	# cat $libf/phy$physique/raddim.h
622	# else
623	# echo On peut diminuer la taille de l executable en creant
624	# echo le fichier $libf/phy$physique/raddim.$dimh.h
625	# \cp -p $libf/phy$physique/raddim.defaut.h $libf/phy$physique/raddim.h
626	# fi
627	#fi
628
629	######################################################################
630	# Gestion du filtre qui n'existe qu'en 3d.
631	######################################################################
632
633	if (( `expr $dimc \> 2` == 1 ))
634	then
635	filtre="FILTRE=$filtre"
636	else
637	filtre="FILTRE= L_FILTRE= "
638	fi
639	echo MACRO FILTRE $filtre
640
641	echo $dimc
642
643
644
645	######################################################################
646	# Creation du suffixe de la configuration
647	######################################################################
648
649
650	SUFF_NAME=_${dim_full}
651	SUFF_NAME=${SUFF_NAME}_phy${physique}
652
653	if [[ "$parallel" != "none" ]]
654	then
655	SUFF_NAME=${SUFF_NAME}_para
656	DYN=dyn${dimc}d${paramem}
657	if [[ "$paramem" == "mem" ]]
658	then
659	SUFF_NAME=${SUFF_NAME}_${paramem}
660	fi
661	else
662	SUFF_NAME=${SUFF_NAME}_seq
663	if (( $dimension == 1 ))
664	then
665	# dynamics-related routines in"dyn1d" subdirectory of phy${physique}
666	DYN=phy${physique}/dyn1d
667	else
668	DYN=dyn${dimc}d
669	fi
670	fi
671
672	if [[ $veget != "false" ]]
673	then
674	SUFF_NAME=${SUFF_NAME}_orch
675	fi
676
677	if [[ $couple != "false" ]]
678	then
679	SUFF_NAME=${SUFF_NAME}_couple
680	fi
681
682	if [[ $chimie == "INCA" ]]
683	then
684	SUFF_NAME=${SUFF_NAME}_inca
685	fi
686
687	if [[ $libphy == "true" ]]
688	then
689	# special case where we compile only the physics
690	DYN=$LMDGCM/.void_dir
691	DYN_COMMON_PATH=$LMDGCM/.void_dir
692	FILTRE_PATH=$LMDGCM/.void_dir
693	DYN_PHYS_PATH=$LMDGCM/.void_dir
694	DYN_PHYS_SUB_PATH=$LMDGCM/.void_dir
695	#and there is no main program to generate
696	code=""
697	SUFF_NAME=""
698	else
699	SUFF_NAME=${SUFF_NAME}.e
700	fi
701
702	cd $LMDGCM
703	config_fcm="config.fcm"
704	rm -f $config_fcm
705	touch $config_fcm
706
707	echo "%ARCH $arch" >> $config_fcm
708	echo "%INCDIR $INCLUDE_DIR" >> $config_fcm
709	echo "%LIB $LIB" >> $config_fcm
710	echo "%ROOT_PATH $PWD" >> $config_fcm
711	echo "%LIBF $LIBFGCM" >> $config_fcm
712	echo "%LIBO $LIBOGCM" >> $config_fcm
713	echo "%DYN $DYN" >> $config_fcm
714	echo "%DYN_COMMON $DYN_COMMON_PATH" >> $config_fcm
715	echo "%PHY_COMMON $PHY_COMMON_PATH" >> $config_fcm
716	echo "%FILTRE $FILTRE_PATH" >> $config_fcm
717	echo "%PHYS phy${physique}" >> $config_fcm
718	echo "%DYN_PHYS $DYN_PHYS_PATH" >> $config_fcm
719	echo "%DYN_PHYS_SUB $DYN_PHYS_SUB_PATH" >> $config_fcm
720	echo "%RRTM $RRTM_PATH" >> $config_fcm
721	echo "%DUST $DUST_PATH" >> $config_fcm
722	echo "%STRATAER $STRATAER_PATH" >> $config_fcm
723	echo "%SISVAT $SISVAT_PATH" >> $config_fcm
724	echo "%COSP $COSP_PATH" >> $config_fcm
725	echo "%CHEM $CHEM_PATH" >> $config_fcm
726	echo "%CLOUD $CLOUD_PATH" >> $config_fcm
727	echo "%MUPHY $MUPHY_PATH" >> $config_fcm
728	echo "%AERONO $AERONO_PATH" >> $config_fcm
729	echo "%CPP_KEY $CPP_KEY" >> $config_fcm
730	echo "%EXEC $code" >> $config_fcm
731	echo "%SUFF_NAME $SUFF_NAME" >> $config_fcm
732	echo "%COMPIL_FFLAGS $COMPIL_FFLAGS" >> $config_fcm
733	echo "%PARA_FFLAGS $PARA_FFLAGS" >> $config_fcm
734	echo "%PARA_LD $PARA_LD" >> $config_fcm
735	echo "%EXT_SRC $EXT_SRC" >> $config_fcm
736
737	# setup arch.fcm and arch.opt
738	rm -f arch.fcm
739	rm -f arch.opt
740	ln -s arch/arch-${arch}.fcm arch.fcm
741	if test -f arch/arch-${arch}.opt && [ $compil_mod = "prod" ]
742	then
743	ln -s arch/arch-${arch}.opt arch.opt
744	else
745	ln -s .void_file arch.opt
746	fi
747
748	# cleanup before compiling
749	rm -f bin/${code}${SUFF_NAME}.e
750	rm -f $LIBOGCM/${arch}${SUFF_NAME}/.config/fcm.bld.lock
751	./build_gcm ${fcm_path} -j $job $full
752
753	rm -rf tmp_src
754	rm -rf config
755	ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config config
756	ln -s $LIBOGCM/${arch}${SUFF_NAME}/.config/ppsrc tmp_src
757
758
759	if [[ -r $LIBFGCM/grid/dimensions.h ]]
760	then
761	# Cleanup: remove dimension.h file
762	\rm -f $LIBFGCM/grid/dimensions.h
763	fi

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