[3076] | 1 | PROGRAM reshape_XIOS_output |
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[2855] | 2 | |
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| 3 | !======================================================================= |
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[3786] | 4 | ! Purpose: Read XIOS NetCDF files and convert them onto the PCM grid. |
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| 5 | ! XIOS longitudes run from -180 to +180 (exclusive). So we append |
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| 6 | ! the first longitude value again at the end in the output to |
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| 7 | ! complete the grid. Done for the two PCM years. |
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[2855] | 8 | ! |
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[3786] | 9 | ! Authors: RV & LL (original), JBC (optimized) |
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[2855] | 10 | !======================================================================= |
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[3786] | 11 | |
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[3076] | 12 | use netcdf |
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[3836] | 13 | use parse_args_mod, only: parse_args |
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[2850] | 14 | |
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[3076] | 15 | implicit none |
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[2850] | 16 | |
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[3786] | 17 | ! Variables for NetCDF I/O and bookkeeping |
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| 18 | integer :: state |
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| 19 | integer :: ncid_in, ncid_out |
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| 20 | integer :: ndims, nvars, nGlobalAtts, unlimDimID |
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| 21 | integer, allocatable, dimension(:) :: dimids_in, varids_in |
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| 22 | integer, allocatable, dimension(:) :: dimids_out, varids_out |
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[2850] | 23 | |
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[3786] | 24 | ! Store each input dimension name and length |
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| 25 | character(30), allocatable, dimension(:) :: dimNames |
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| 26 | integer, allocatable, dimension(:) :: dimLens |
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[3579] | 27 | |
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[3786] | 28 | ! Which input‐index corresponds to lon/lat/time/soil (–1 if not present) |
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| 29 | integer :: idx_lon_in = -1 |
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| 30 | integer :: idx_lat_in = -1 |
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| 31 | integer :: idx_time_in = -1 |
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| 32 | integer :: idx_soil_in = -1 |
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| 33 | |
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| 34 | ! Lengths of key dims (input), plus output lon length |
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| 35 | integer :: len_lon_in, len_lat_in, len_time_in, len_soil_in |
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| 36 | integer :: len_lon_out |
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| 37 | |
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| 38 | ! Loop and variable bookkeeping |
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| 39 | integer :: i, j, k |
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| 40 | integer :: numDimsVar, numAttsVar |
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[3836] | 41 | character(100) :: varName |
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[3786] | 42 | integer :: xtypeVar |
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| 43 | integer, allocatable, dimension(:) :: dimids_var_in |
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| 44 | |
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| 45 | ! Buffers for reading/writing when first‐dim = lon (max‐sized) |
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| 46 | real, allocatable, dimension(:) :: buf1D_in, buf1D_out |
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| 47 | real, allocatable, dimension(:,:) :: buf2D_in, buf2D_out |
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| 48 | real, allocatable, dimension(:,:,:) :: buf3D_in, buf3D_out |
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| 49 | real, allocatable, dimension(:,:,:,:) :: buf4D_in, buf4D_out |
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| 50 | |
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| 51 | ! Temporaries for "non‐lon‐first" variables |
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| 52 | real, allocatable, dimension(:) :: tmp1D |
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| 53 | real, allocatable, dimension(:,:) :: tmp2D |
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| 54 | real, allocatable, dimension(:,:,:) :: tmp3D |
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| 55 | real, allocatable, dimension(:,:,:,:) :: tmp4D |
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| 56 | |
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| 57 | ! Temporaries for dimension inquiries |
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| 58 | integer :: thisLen |
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| 59 | integer :: len1, len2, len3, len4 |
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| 60 | integer :: lenDim2, lenDim3, lenDim4 |
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| 61 | character(30) :: tmpDimName |
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| 62 | |
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| 63 | logical :: uses_lon_first |
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| 64 | |
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| 65 | ! For looping over two "years" |
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| 66 | integer :: numyear |
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| 67 | character(4) :: str |
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| 68 | |
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| 69 | ! For deleting existing output |
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| 70 | integer :: cstat |
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| 71 | logical :: exists |
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| 72 | |
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| 73 | ! CODE |
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[3836] | 74 | ! Parse command-line options |
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| 75 | call parse_args() |
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[3579] | 76 | |
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[3786] | 77 | ! Main loop: two PCM years |
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[3076] | 78 | do numyear = 1,2 |
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[3786] | 79 | write(str,'(I1.1)') numyear |
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| 80 | write(*,*) "> Reshaping variables from ""data2reshape_Y"//trim(str)//".nc""..." |
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[3181] | 81 | |
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[3786] | 82 | ! Open input file (read‐only) |
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| 83 | state = nf90_open("data2reshape_Y"//trim(str)//".nc",mode = nf90_nowrite,ncid = ncid_in) |
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[3076] | 84 | if (state /= nf90_noerr) call handle_err(state) |
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[2850] | 85 | |
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[3786] | 86 | ! If output exists, delete it |
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| 87 | inquire(file = "data_PCM_Y"//trim(str)//".nc",exist = exists) |
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| 88 | if (exists) then |
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| 89 | call execute_command_line("rm data_PCM_Y"//trim(str)//".nc",cmdstat = cstat) |
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[3106] | 90 | if (cstat > 0) then |
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| 91 | error stop 'Command exection failed!' |
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| 92 | else if (cstat < 0) then |
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| 93 | error stop 'Command execution not supported!' |
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| 94 | endif |
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| 95 | endif |
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[3786] | 96 | |
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| 97 | ! Create output file in define mode |
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| 98 | state = nf90_create("data_PCM_Y"//trim(str)//".nc",cmode = or(nf90_noclobber,nf90_64bit_offset),ncid = ncid_out) |
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[3076] | 99 | if (state /= nf90_noerr) call handle_err(state) |
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[2850] | 100 | |
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[3786] | 101 | ! Inquire input for dims, vars, global atts, unlimited dim ID |
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| 102 | state = nf90_inquire(ncid_in,ndims,nvars,nGlobalAtts,unlimDimID) |
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[3076] | 103 | if (state /= nf90_noerr) call handle_err(state) |
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[2850] | 104 | |
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[3786] | 105 | ! Allocate arrays for dim IDs, var IDs, names, lengths |
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| 106 | allocate(dimids_in(ndims),varids_in(nvars),dimids_out(ndims),varids_out(nvars),dimNames(ndims),dimLens(ndims)) |
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[2850] | 107 | |
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[3786] | 108 | ! Get the dimension IDs and then query each for its name and length |
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| 109 | state = nf90_inq_dimids(ncid_in,ndims,dimids_in,unlimDimID) |
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[3076] | 110 | if (state /= nf90_noerr) call handle_err(state) |
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[2850] | 111 | |
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[3076] | 112 | do i = 1,ndims |
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[3786] | 113 | state = nf90_inquire_dimension(ncid_in,dimids_in(i),dimNames(i),dimLens(i)) |
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[3076] | 114 | if (state /= nf90_noerr) call handle_err(state) |
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[3786] | 115 | |
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| 116 | select case (trim(dimNames(i))) |
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| 117 | case ("lon","longitude") |
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| 118 | idx_lon_in = i |
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| 119 | len_lon_in = dimLens(i) |
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| 120 | case ("lat","latitude") |
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| 121 | idx_lat_in = i |
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| 122 | len_lat_in = dimLens(i) |
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| 123 | case ("time_counter","Time") |
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| 124 | idx_time_in = i |
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| 125 | len_time_in = dimLens(i) |
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| 126 | case ("soil_layers","subsurface_layers") |
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| 127 | idx_soil_in = i |
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| 128 | len_soil_in = dimLens(i) |
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| 129 | case default |
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| 130 | ! nothing special |
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| 131 | end select |
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| 132 | |
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| 133 | ! Define the same dimension in the output, except lon becoming (len_lon_in + 1) |
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| 134 | if (i == idx_lon_in) then |
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| 135 | len_lon_out = len_lon_in + 1 |
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| 136 | state = nf90_def_dim(ncid_out,trim(dimNames(i)),len_lon_out,dimids_out(i)) |
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| 137 | else |
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| 138 | state = nf90_def_dim(ncid_out,trim(dimNames(i)),dimLens(i),dimids_out(i)) |
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[3076] | 139 | endif |
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| 140 | if (state /= nf90_noerr) call handle_err(state) |
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| 141 | enddo |
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[2850] | 142 | |
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[3786] | 143 | ! Ensure mandatory dims exist |
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| 144 | if (idx_lon_in < 0 .or. idx_lat_in < 0) error stop "Input is missing mandatory 'lon' or 'lat' dimension." |
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| 145 | if (idx_time_in < 0) len_time_in = 1 |
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| 146 | if (idx_soil_in < 0) len_soil_in = 1 |
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| 147 | |
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| 148 | ! Allocate only the "lon‐first" buffers (max‐sized) once |
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| 149 | allocate(buf1D_in(len_lon_in),buf1D_out(len_lon_out)) |
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| 150 | allocate(buf2D_in(len_lon_in,len_lat_in),buf2D_out(len_lon_out, len_lat_in)) |
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| 151 | allocate(buf3D_in(len_lon_in,len_lat_in,len_time_in),buf3D_out(len_lon_out,len_lat_in,len_time_in)) |
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| 152 | allocate(buf4D_in(len_lon_in,len_lat_in,len_soil_in,len_time_in),buf4D_out(len_lon_out,len_lat_in,len_soil_in,len_time_in)) |
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| 153 | |
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| 154 | ! Get all variable IDs |
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| 155 | state = nf90_inq_varids(ncid_in,nvars,varids_in) |
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| 156 | if (state /= nf90_noerr) call handle_err(state) |
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| 157 | |
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| 158 | ! Loop over each variable to define it in the output |
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[3076] | 159 | do i = 1,nvars |
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[3786] | 160 | ! Inquire name, xtype, ndims, natts |
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| 161 | state = nf90_inquire_variable(ncid_in,varids_in(i),name = varName,xtype = xtypeVar,ndims = numDimsVar,natts = numAttsVar) |
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[3076] | 162 | if (state /= nf90_noerr) call handle_err(state) |
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[3786] | 163 | write(*,*) 'Treatment of '//varName |
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| 164 | |
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| 165 | allocate(dimids_var_in(numDimsVar)) |
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| 166 | state = nf90_inquire_variable(ncid_in,varids_in(i),name = varName,xtype = xtypeVar,ndims = numDimsVar,dimids = dimids_var_in,natts = numAttsVar) |
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[3076] | 167 | if (state /= nf90_noerr) call handle_err(state) |
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[3786] | 168 | |
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| 169 | ! Detect if this variable first dimension is "lon" |
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| 170 | if (numDimsVar >= 1 .and. dimids_var_in(1) == dimids_in(idx_lon_in)) then |
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| 171 | uses_lon_first = .true. |
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| 172 | else |
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| 173 | uses_lon_first = .false. |
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[3076] | 174 | endif |
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[3786] | 175 | |
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| 176 | ! Build the output‐dimids list: replace the first dim with the output lon if needed |
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| 177 | if (uses_lon_first) dimids_var_in(1) = dimids_out(idx_lon_in) |
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| 178 | do j = 2,numDimsVar |
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| 179 | ! Map each subsequent input dim to its output dim |
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| 180 | do k = 1,ndims |
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| 181 | if (dimids_var_in(j) == dimids_in(k)) then |
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| 182 | dimids_var_in(j) = dimids_out(k) |
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| 183 | exit |
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| 184 | endif |
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| 185 | enddo |
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| 186 | enddo |
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| 187 | |
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| 188 | ! Define this variable (same name, same xtype, but new dimids) |
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| 189 | state = nf90_def_var(ncid_out,trim(varName),xtypeVar,dimids_var_in,varids_out(i)) |
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| 190 | if (state /= nf90_noerr) call handle_err(state) |
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| 191 | |
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| 192 | deallocate(dimids_var_in) |
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[3076] | 193 | enddo |
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[2850] | 194 | |
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[3786] | 195 | ! Done defining all dims and vars exit define mode exactly once |
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| 196 | state = nf90_enddef(ncid_out) |
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[3076] | 197 | if (state /= nf90_noerr) call handle_err(state) |
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[3786] | 198 | |
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| 199 | ! Loop over each variable to read from input and write to output |
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| 200 | do i = 1,nvars |
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| 201 | ! Re‐inquire metadata so we know dimids_var_in and numDimsVar |
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| 202 | state = nf90_inquire_variable(ncid_in,varids_in(i),name = varName,xtype = xtypeVar,ndims = numDimsVar,natts = numAttsVar) |
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| 203 | if (state /= nf90_noerr) call handle_err(state) |
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| 204 | |
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| 205 | allocate(dimids_var_in(numDimsVar)) |
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| 206 | state = nf90_inquire_variable(ncid_in, varids_in(i),name = varName,xtype = xtypeVar,ndims = numDimsVar,dimids = dimids_var_in,natts = numAttsVar) |
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| 207 | if (state /= nf90_noerr) call handle_err(state) |
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| 208 | |
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| 209 | ! Detect again if first dim = lon |
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| 210 | if (numDimsVar >= 1 .and. dimids_var_in(1) == dimids_in(idx_lon_in)) then |
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| 211 | uses_lon_first = .true. |
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| 212 | else |
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| 213 | uses_lon_first = .false. |
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| 214 | endif |
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| 215 | |
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| 216 | select case (numDimsVar) |
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| 217 | case (1) |
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| 218 | if (uses_lon_first) then |
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| 219 | ! 1D lon sequence: read len_lon_in, extend to len_lon_out |
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| 220 | state = nf90_get_var(ncid_in,varids_in(i),buf1D_in) |
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| 221 | if (state /= nf90_noerr) call handle_err(state) |
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| 222 | |
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| 223 | buf1D_out(1:len_lon_in) = buf1D_in(1:len_lon_in) |
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| 224 | buf1D_out(len_lon_out) = buf1D_in(1) ! repeat first lon at end |
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| 225 | |
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| 226 | state = nf90_put_var(ncid_out,varids_out(i),buf1D_out) |
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| 227 | if (state /= nf90_noerr) call handle_err(state) |
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| 228 | |
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| 229 | else |
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| 230 | ! Some other 1D (e.g. lat or time). Allocate exact 1D temp: |
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| 231 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(1),tmpDimName, thisLen) |
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| 232 | if (state /= nf90_noerr) call handle_err(state) |
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| 233 | |
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| 234 | allocate(tmp1D(thisLen)) |
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| 235 | state = nf90_get_var(ncid_in,varids_in(i),tmp1D(1:thisLen)) |
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| 236 | if (state /= nf90_noerr) call handle_err(state) |
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| 237 | |
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| 238 | state = nf90_put_var(ncid_out,varids_out(i),tmp1D(1:thisLen)) |
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| 239 | if (state /= nf90_noerr) call handle_err(state) |
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| 240 | |
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| 241 | deallocate(tmp1D) |
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| 242 | endif |
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| 243 | |
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| 244 | case (2) |
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| 245 | if (uses_lon_first) then |
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| 246 | ! 2D with first dim = lon (len_lon_in × lenDim2) |
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| 247 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(2),tmpDimName,lenDim2) |
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| 248 | if (state /= nf90_noerr) call handle_err(state) |
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| 249 | |
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| 250 | state = nf90_get_var(ncid_in,varids_in(i),buf2D_in(1:len_lon_in,1:lenDim2)) |
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| 251 | if (state /= nf90_noerr) call handle_err(state) |
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| 252 | |
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| 253 | buf2D_out(1:len_lon_in,1:lenDim2) = buf2D_in(1:len_lon_in,1:lenDim2) |
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| 254 | buf2D_out(len_lon_out,1:lenDim2) = buf2D_in(1,1:lenDim2) |
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| 255 | |
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| 256 | state = nf90_put_var(ncid_out,varids_out(i),buf2D_out(1:len_lon_out,1:lenDim2)) |
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| 257 | if (state /= nf90_noerr) call handle_err(state) |
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| 258 | |
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| 259 | else |
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| 260 | ! Some other 2D (no lon‐extension). Allocate exact 2D temp: |
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| 261 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(1),tmpDimName,len1) |
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| 262 | if (state /= nf90_noerr) call handle_err(state) |
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| 263 | state = nf90_inquire_dimension(ncid_in, dimids_var_in(2),tmpDimName,len2) |
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| 264 | if (state /= nf90_noerr) call handle_err(state) |
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| 265 | |
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| 266 | allocate(tmp2D(len1,len2)) |
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| 267 | state = nf90_get_var(ncid_in,varids_in(i),tmp2D(1:len1,1:len2)) |
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| 268 | if (state /= nf90_noerr) call handle_err(state) |
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| 269 | |
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| 270 | state = nf90_put_var(ncid_out, varids_out(i), tmp2D(1:len1,1:len2)) |
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| 271 | if (state /= nf90_noerr) call handle_err(state) |
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| 272 | |
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| 273 | deallocate(tmp2D) |
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| 274 | endif |
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| 275 | |
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| 276 | case (3) |
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| 277 | if (uses_lon_first) then |
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| 278 | ! 3D with first dim = lon (len_lon_in × lenDim2 × lenDim3) |
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| 279 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(2),tmpDimName,lenDim2) |
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| 280 | if (state /= nf90_noerr) call handle_err(state) |
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| 281 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(3),tmpDimName,lenDim3) |
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| 282 | if (state /= nf90_noerr) call handle_err(state) |
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| 283 | |
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| 284 | state = nf90_get_var(ncid_in,varids_in(i),buf3D_in(1:len_lon_in,1:lenDim2,1:lenDim3)) |
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| 285 | if (state /= nf90_noerr) call handle_err(state) |
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| 286 | |
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| 287 | buf3D_out(1:len_lon_in,1:lenDim2,1:lenDim3) = buf3D_in(1:len_lon_in,1:lenDim2,1:lenDim3) |
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| 288 | buf3D_out(len_lon_out,1:lenDim2,1:lenDim3) = buf3D_in(1,1:lenDim2,1:lenDim3) |
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| 289 | |
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| 290 | state = nf90_put_var(ncid_out,varids_out(i),buf3D_out(1:len_lon_out,1:lenDim2,1:lenDim3)) |
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| 291 | if (state /= nf90_noerr) call handle_err(state) |
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| 292 | |
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| 293 | else |
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| 294 | ! Some other 3D (no lon‐extension). Allocate exact 3D temp: |
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| 295 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(1),tmpDimName,len1) |
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| 296 | if (state /= nf90_noerr) call handle_err(state) |
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| 297 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(2),tmpDimName,len2) |
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| 298 | if (state /= nf90_noerr) call handle_err(state) |
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| 299 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(3),tmpDimName,len3) |
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| 300 | if (state /= nf90_noerr) call handle_err(state) |
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| 301 | |
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| 302 | allocate(tmp3D(len1,len2,len3)) |
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| 303 | state = nf90_get_var(ncid_in,varids_in(i),tmp3D(1:len1,1:len2,1:len3)) |
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| 304 | if (state /= nf90_noerr) call handle_err(state) |
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| 305 | |
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| 306 | state = nf90_put_var(ncid_out,varids_out(i),tmp3D(1:len1,1:len2,1:len3)) |
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| 307 | if (state /= nf90_noerr) call handle_err(state) |
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| 308 | |
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| 309 | deallocate(tmp3D) |
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| 310 | endif |
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| 311 | |
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| 312 | case (4) |
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| 313 | if (uses_lon_first) then ! 4D with first dim = lon (len_lon_in × lenDim2 × lenDim3 × lenDim4) |
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| 314 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(2),tmpDimName,lenDim2) |
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| 315 | if (state /= nf90_noerr) call handle_err(state) |
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| 316 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(3),tmpDimName,lenDim3) |
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| 317 | if (state /= nf90_noerr) call handle_err(state) |
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| 318 | state = nf90_inquire_dimension(ncid_in,dimids_var_in(4),tmpDimName,lenDim4) |
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| 319 | if (state /= nf90_noerr) call handle_err(state) |
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| 320 | |
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| 321 | state = nf90_get_var(ncid_in,varids_in(i),buf4D_in(1:len_lon_in,1:lenDim2,1:lenDim3,1:lenDim4)) |
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| 322 | if (state /= nf90_noerr) call handle_err(state) |
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| 323 | |
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| 324 | buf4D_out(1:len_lon_in,1:lenDim2,1:lenDim3,1:lenDim4) = buf4D_in(1:len_lon_in, 1:lenDim2,1:lenDim3,1:lenDim4) |
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| 325 | buf4D_out(len_lon_out,1:lenDim2,1:lenDim3,1:lenDim4) = buf4D_in(1,1:lenDim2,1:lenDim3,1:lenDim4) |
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| 326 | |
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| 327 | state = nf90_put_var(ncid_out,varids_out(i),buf4D_out(1:len_lon_out,1:lenDim2,1:lenDim3,1:lenDim4)) |
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| 328 | if (state /= nf90_noerr) call handle_err(state) |
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| 329 | |
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| 330 | else ! Some other 4D (no lon‐extension). Allocate exact 4D temp: |
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| 331 | state = nf90_inquire_dimension(ncid_in, dimids_var_in(1),tmpDimName,len1) |
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| 332 | if (state /= nf90_noerr) call handle_err(state) |
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| 333 | state = nf90_inquire_dimension(ncid_in, dimids_var_in(2),tmpDimName,len2) |
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| 334 | if (state /= nf90_noerr) call handle_err(state) |
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| 335 | state = nf90_inquire_dimension(ncid_in, dimids_var_in(3),tmpDimName,len3) |
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| 336 | if (state /= nf90_noerr) call handle_err(state) |
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| 337 | state = nf90_inquire_dimension(ncid_in, dimids_var_in(4),tmpDimName,len4) |
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| 338 | if (state /= nf90_noerr) call handle_err(state) |
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| 339 | |
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| 340 | allocate(tmp4D(len1,len2,len3,len4)) |
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| 341 | state = nf90_get_var(ncid_in,varids_in(i),tmp4D(1:len1,1:len2,1:len3,1:len4)) |
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| 342 | if (state /= nf90_noerr) call handle_err(state) |
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| 343 | |
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| 344 | state = nf90_put_var(ncid_out,varids_out(i),tmp4D(1:len1,1:len2,1:len3,1:len4)) |
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| 345 | if (state /= nf90_noerr) call handle_err(state) |
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| 346 | |
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| 347 | deallocate(tmp4D) |
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| 348 | endif |
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| 349 | |
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| 350 | case default |
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| 351 | cycle ! Skip variables with 0 dims |
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| 352 | end select |
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| 353 | |
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| 354 | deallocate(dimids_var_in) |
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| 355 | enddo |
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| 356 | |
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| 357 | ! Close both NetCDF files |
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| 358 | state = nf90_close(ncid_in) |
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[3076] | 359 | if (state /= nf90_noerr) call handle_err(state) |
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[3786] | 360 | state = nf90_close(ncid_out) |
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[3076] | 361 | if (state /= nf90_noerr) call handle_err(state) |
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[2850] | 362 | |
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[3786] | 363 | ! Deallocate everything |
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| 364 | deallocate(dimids_in,dimids_out,varids_in,varids_out,dimNames,dimLens) |
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| 365 | deallocate(buf1D_in,buf1D_out,buf2D_in,buf2D_out,buf3D_in,buf3D_out,buf4D_in,buf4D_out) |
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| 366 | |
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| 367 | write(*,*) "> ""data2reshape_Y"//trim(str)//".nc"" processed!" |
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[2850] | 368 | enddo |
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| 369 | |
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[3076] | 370 | END PROGRAM reshape_XIOS_output |
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