| 1 | #!/bin/bash |
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| 2 | ### Partition to use |
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| 3 | #SBATCH --account=cin0391 |
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| 4 | #SBATCH --constraint=GENOA |
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| 5 | ### Number of nodes/cores to use |
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| 6 | #SBATCH --nodes=1 |
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| 7 | #SBATCH --ntasks-per-node=1 |
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| 8 | #SBATCH --cpus-per-task=1 |
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| 9 | #SBATCH --threads-per-core=1 # --hint=nomultithread |
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| 10 | ### Job information |
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| 11 | #SBATCH --job-name=jobPEM1 |
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| 12 | #SBATCH --output=jobPEM_%j.out |
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| 13 | #SBATCH --time=24:00:00 |
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| 14 | #SBATCH --mem=64G |
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| 15 | |
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| 16 | ######################################################################## |
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| 17 | # Modify here the parameters depending on your setup |
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| 18 | #################################################### |
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| 19 | # Path to the arch.env to source: |
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| 20 | source ../trunk/LMDZ.COMMON/arch.env |
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| 21 | |
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| 22 | # Name of executable for the PEM: |
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| 23 | exePEM="pem_64x48x32_phymars_seq.e" |
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| 24 | |
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| 25 | # Argument for the PEM execution ("--auto-exit" for SLURM and PBS/TORQUE | "" when the script is not run as a job): |
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| 26 | arg_pem="--auto-exit" |
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| 27 | ######################################################################## |
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| 28 | |
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| 29 | |
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| 30 | ulimit -s unlimited |
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| 31 | |
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| 32 | # Running the PEM |
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| 33 | read i_myear n_myear convert_years iPCM iPEM nPCM nPCM_ini < info_PEM.txt |
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| 34 | echo "Run \"PEM $iPEM\" is starting." |
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| 35 | cp run_PEM.def run.def |
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| 36 | eval "./$exePEM $arg_pem > run.log 2>&1" |
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| 37 | if [ ! -f "restartfi.nc" ] || ! (tail -n 100 run.log | grep -iq "so far, so good!"); then # Check if it ended abnormally |
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| 38 | echo "Error: the run \"PEM $iPEM\" crashed!" |
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| 39 | exit 1 |
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| 40 | fi |
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| 41 | |
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| 42 | # Copy data files and prepare the next run |
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| 43 | mv run.log logs/runPEM${iPEM}.log |
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| 44 | if [ -f "diagpem.nc" ]; then |
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| 45 | mv diagpem.nc diags/diagpem${iPEM}.nc |
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| 46 | fi |
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| 47 | if [ -f "diagsoilpem.nc" ]; then |
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| 48 | mv diagsoilpem.nc diags/diagsoilpem${iPEM}.nc |
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| 49 | fi |
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| 50 | cp restartpem.nc starts/restartpem${iPEM}.nc |
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| 51 | mv restartpem.nc startpem.nc |
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| 52 | cp restartfi.nc starts/restartfi_postPEM${iPEM}.nc |
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| 53 | mv restartfi.nc startfi.nc |
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| 54 | if [ -f "restart.nc" ]; then |
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| 55 | cp restart.nc starts/restart_postPEM${iPEM}.nc |
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| 56 | mv restart.nc start.nc |
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| 57 | elif [ -f "restart1D.txt" ]; then |
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| 58 | cp restart1D.txt starts/restart1D_postPEM${iPEM}.txt |
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| 59 | mv restart1D.txt start1D.txt |
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| 60 | fi |
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| 61 | |
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| 62 | # Launch the next cycle |
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| 63 | #if [ "$(awk 'END{print $NF}' info_PEM.txt)" -eq 7 ]; then |
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| 64 | # read i_myear n_myear convert_years iPCM iPEM nPCM nPCM_ini < info_PEM.txt |
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| 65 | # ./launchPEM.sh cont # Continue the PEM run if it stopped because of job time limit |
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| 66 | #else |
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| 67 | ./launchPEM.sh new |
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| 68 | #fi |
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