| 1 | #!/bin/bash |
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| 2 | #SBATCH --job-name=jobPCM0 |
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| 3 | #SBATCH --account=cin0391 |
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| 4 | ### GENOA nodes accommodate 96 cores |
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| 5 | #SBATCH --constraint=GENOA |
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| 6 | ### Number of Nodes to use |
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| 7 | #SBATCH --nodes=1 |
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| 8 | #SBATCH --ntasks-per-node=24 |
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| 9 | #SBATCH --cpus-per-task=4 |
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| 10 | #SBATCH --threads-per-core=1 # --hint=nomultithread |
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| 11 | ###SBATCH --exclusive |
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| 12 | #SBATCH --output=jobPCM_%j.out |
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| 13 | #SBATCH --time=10:00:00 |
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| 14 | |
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| 15 | # A few parameters that might need to be changed depending on your setup |
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| 16 | # Path to the arch.env to source: |
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| 17 | source ../trunk/LMDZ.COMMON/arch.env |
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| 18 | |
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| 19 | # Number of threads to use (must be the same as "#SBATCH --cpus-per-task=" above) |
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| 20 | export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK |
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| 21 | export OMP_STACKSIZE=400M |
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| 22 | |
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| 23 | # Name of executable for the PCM: |
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| 24 | exePCM="gcm_64x48x32_phymars_para.e" |
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| 25 | ######################################################################## |
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| 26 | |
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| 27 | |
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| 28 | ulimit -s unlimited |
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| 29 | |
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| 30 | # Running the PCM |
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| 31 | echo "Run PCM $iPCM is starting." |
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| 32 | read i_myear n_myear convert_years iPCM iPEM nPCM nPCM_ini < info_PEM.txt |
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| 33 | cp run_PCM.def run.def |
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| 34 | srun --cpu-bind=threads --label -c${OMP_NUM_THREADS:=1} $exePCM > out_runPCM${iPCM} 2>&1 |
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| 35 | if [ ! -f "restartfi.nc" ] || ! (tail -n 1 out_runPCM${iPCM} | grep -iq "everything is cool!"); then # Check if it ended abnormally |
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| 36 | echo "Error: the run PCM $iPCM crashed!" |
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| 37 | echo "Be careful: there may be dependent jobs remaining in the SLURM queue with status 'DependencyNeverSatisfied'! You can cancel them by executing the script \"kill_launchPEM.sh\"." |
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| 38 | exit 1 |
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| 39 | fi |
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| 40 | |
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| 41 | # Copy data files and prepare the next run |
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| 42 | mv out_runPCM${iPCM} out_PCM/run${iPCM} |
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| 43 | if [ -f "diagfi.nc" ]; then |
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| 44 | mv diagfi.nc diags/diagfi${iPCM}.nc |
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| 45 | fi |
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| 46 | if [ -f "diagsoil.nc" ]; then |
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| 47 | mv diagsoil.nc diags/diagsoil${iPCM}.nc |
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| 48 | fi |
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| 49 | if [ -f "stats.nc" ]; then |
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| 50 | mv stats.nc diags/stats${iPCM}.nc |
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| 51 | fi |
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| 52 | k=0 |
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| 53 | if [ $(echo "$k < 1" | bc -l) -eq 1 ]; then # Only the last 2 years are taken for the PEM |
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| 54 | mv Xdiurnalave.nc diags/data2reshape${iPCM}.nc |
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| 55 | else |
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| 56 | cp Xdiurnalave.nc diags/data2reshape${iPCM}.nc |
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| 57 | mv Xdiurnalave.nc data2reshape_Y${k}.nc |
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| 58 | fi |
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| 59 | cp restartfi.nc starts/restartfi${iPCM}.nc |
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| 60 | mv restartfi.nc startfi.nc |
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| 61 | if [ -f "restart.nc" ]; then |
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| 62 | cp restart.nc starts/restart${iPCM}.nc |
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| 63 | mv restart.nc start.nc |
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| 64 | elif [ -f "restart1D.txt" ]; then |
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| 65 | cp restart1D.txt starts/restart1D${iPCM}.txt |
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| 66 | mv restart1D.txt start1D.txt |
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| 67 | fi |
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| 68 | ((iPCM++)) |
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| 69 | ((i_myear++)) |
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| 70 | sed -i "1s/.*/$i_myear $n_myear $convert_years $iPCM $iPEM $nPCM $nPCM_ini/" info_PEM.txt |
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