source: trunk/LMDZ.COMMON/libf/evolution/deftank/PCMrun.job @ 3554

Last change on this file since 3554 was 3518, checked in by jbclement, 6 weeks ago

PEM:
Committing the right correction in previous commit (r3516) would have been better...
JBC

  • Property svn:executable set to *
File size: 2.4 KB
RevLine 
[3349]1#!/bin/bash
2#SBATCH --job-name=jobPCM0
3#SBATCH --account=cin0391
4### GENOA nodes accommodate 96 cores
5#SBATCH --constraint=GENOA
6### Number of Nodes to use
7#SBATCH --nodes=1
[3351]8#SBATCH --ntasks-per-node=24
[3349]9#SBATCH --cpus-per-task=4
10#SBATCH --threads-per-core=1 # --hint=nomultithread
11###SBATCH --exclusive
[3403]12#SBATCH --output=jobPCM_%j.out
[3416]13#SBATCH --time=10:00:00
[3349]14
[3351]15# A few parameters that might need to be changed depending on your setup
16# Path to the arch.env to source:
[3349]17source ../trunk/LMDZ.COMMON/arch.env
18
[3403]19# Number of threads to use (must be the same as "#SBATCH --cpus-per-task=" above)
20export OMP_NUM_THREADS=$SLURM_CPUS_PER_TASK
[3349]21export OMP_STACKSIZE=400M
22
[3351]23# Name of executable for the PCM:
24exePCM="gcm_64x48x32_phymars_para.e"
[3495]25
26# Execution command:
[3518]27exe_cmd="srun --cpu-bind=threads --label -c${OMP_NUM_THREADS:=1} $exePCM"
[3351]28########################################################################
29
[3403]30
31ulimit -s unlimited
32
[3354]33# Running the PCM
[3351]34echo "Run PCM $iPCM is starting."
[3349]35read i_myear n_myear convert_years iPCM iPEM nPCM nPCM_ini < info_PEM.txt
36cp run_PCM.def run.def
[3518]37eval "$exe_cmd > out_runPCM${iPCM} 2>&1"
[3495]38if [ ! -f "restartfi.nc" ] || ! (tail -n 100 out_runPCM${iPCM} | grep -iq "everything is cool!"); then # Check if it ended abnormally
[3349]39    echo "Error: the run PCM $iPCM crashed!"
40    echo "Be careful: there may be dependent jobs remaining in the SLURM queue with status 'DependencyNeverSatisfied'! You can cancel them by executing the script \"kill_launchPEM.sh\"."
41    exit 1
42fi
[3354]43
[3349]44# Copy data files and prepare the next run
45mv out_runPCM${iPCM} out_PCM/run${iPCM}
[3386]46if [ -f "diagfi.nc" ]; then
47    mv diagfi.nc diags/diagfi${iPCM}.nc
48fi
[3349]49if [ -f "diagsoil.nc" ]; then
50    mv diagsoil.nc diags/diagsoil${iPCM}.nc
51fi
52if [ -f "stats.nc" ]; then
53    mv stats.nc diags/stats${iPCM}.nc
54fi
55k=0
56if [ $(echo "$k < 1" | bc -l) -eq 1 ]; then # Only the last 2 years are taken for the PEM
57    mv Xdiurnalave.nc diags/data2reshape${iPCM}.nc
58else
59    cp Xdiurnalave.nc diags/data2reshape${iPCM}.nc
60    mv Xdiurnalave.nc data2reshape_Y${k}.nc
61fi
62cp restartfi.nc starts/restartfi${iPCM}.nc
63mv restartfi.nc startfi.nc
64if [ -f "restart.nc" ]; then
65    cp restart.nc starts/restart${iPCM}.nc
66    mv restart.nc start.nc
67elif [ -f "restart1D.txt" ]; then
68    cp restart1D.txt starts/restart1D${iPCM}.txt
69    mv restart1D.txt start1D.txt
70fi
71((iPCM++))
72((i_myear++))
73sed -i "1s/.*/$i_myear $n_myear $convert_years $iPCM $iPEM $nPCM $nPCM_ini/" info_PEM.txt
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