Changes between Version 4 and Version 5 of WikiCompilation

Timestamp:

Jul 9, 2014, 3:38:04 PM (10 years ago)

Author:

lfita

Comment:

--

WikiCompilation

@@ -7 +7 @@
 
 1.- Copy (not int the repository folder...) folder `WRFV3` to the desired spatial resolution (F77 legacy). As example one for 80x90x39
-  {{{
-     $ cp -R WRFV3 ${WORKDIR}/WRFV3_80x90x39
-  }}}
+{{{
+$ cp -R WRFV3 ${WORKDIR}/WRFV3_80x90x39
+}}}
 
 1.- Go to the `${WORKDIR}` and compile there
-  {{{$ cd ${WORKDIR}/WRFV3_80x90x39}}}
+{{{
+$ cd ${WORKDIR}/WRFV3_80x90x39
+}}}
 
 1.- Define domain size for LMDZ editing file `lmdz/dimensions.h` (see documentation for more details)
-  {{{$ cat lmdz/dimensions.h
-       INTEGER iim,jjm,llm,ndm,wiim,wjjm,wbdym
+{{{
+$ cat lmdz/dimensions.h
+   INTEGER iim,jjm,llm,ndm,wiim,wjjm,wbdym
 
-       PARAMETER (iim= 1, jjm=7031, llm=38,ndm=1,wiim=79,wjjm=89,wbdym=5)}}}
+   PARAMETER (iim= 1, jjm=7031, llm=38,ndm=1,wiim=79,wjjm=89,wbdym=5)
+}}}
 
     jjm = (dimx-1) * (dimy -1) [[br]]
@@ -27 +31 @@
 
 1. run script `tools/prepare_compilation.bash` ('-h', for help. copy netCDF libraries and other staff not automatized)
-  {{{$ ./prepare_compilation.bash [WRF_LMDZsrc] [NETCDFhome] ${WORKDIR}/WRFV3_80x90x39}}}
+{{{
+$ ./prepare_compilation.bash [WRF_LMDZsrc] [NETCDFhome] ${WORKDIR}/WRFV3_80x90x39
+}}}
 
 1. prepare compilation (ready for 'lmd' machines in serial) if not, edit
@@ -36 +42 @@
 1. prepare compilation modifying Registry files (already done, have a look just in case):
   1. `$ ls -lrta Registry/Registry.EM`
-    {{{Registry/Registry.EM -> Registry.EM.LMDZ}}}
+    {{{
+    Registry/Registry.EM -> Registry.EM.LMDZ
+    }}}
   1. $ `ls -lrta Registry/registry.dimspec`
-    {{{Registry/registry.dimspec -> registry.dimspec.lmdz}}}
+{{{
+    Registry/registry.dimspec -> registry.dimspec.lmdz
+}}}
 
 1. Compile as usual
-  {{{$ compile em_real >& compile.log}}}
+{{{
+$ compile em_real >& compile.log
+}}}
 
 1. Compile manually a lmdz subroutine (not working, not  knowing why). Example with gfortran serial in lmdz machines
-  {{{$ cd lmdz
+{{{
+  $ cd lmdz
   $ gfortran -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4   -fconvert=big-endian -frecord-marker=4 -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops  -w -ffree-form -ffree-line-length-none -fconvert=big-endian -frecord-marker=4 -g -O0 -fbacktrace -Wall -fbounds-check -c -L/u/lflmd/bin/gcc_netcdf-4.3.0/lib  -lnetcdf -lnetcdff  -I/u/lflmd/bin/gcc_netcdf-4.3.0/include lmdz_wrf_variables_mod.f90
-  $ cd ..}}}
+  $ cd ..
+}}}
 
 1. run script for second time `tools/prepare_compilation.bash`
-  {{{$ ./prepare_compilation.bash [WRF_LMDZsrc] [NETCDFhome] ${WORKDIR}/WRFV3_80x90x39}}}
+{{{
+$ ./prepare_compilation.bash [WRF_LMDZsrc] [NETCDFhome] ${WORKDIR}/WRFV3_80x90x39
+}}}
 
 1. Recompile as usual
-  {{{$ compile em_real >& compile.log}}}
+{{{
+$ compile em_real >& compile.log
+}}}
 
 1. Checking compilation (empty outputs)
   * `$ cat -n compile.log | grep Error`
-  $ `cat -n compile.log | grep Erreur` (just in case you are in a French speaking computer)
+  * `$ cat -n compile.log | grep Erreur` (just in case you are in a French speaking computer)
 
 1. Running simulation