# PyNCplot
## e.g. # to_OBSstations.py -d bases_antartida.desc -f bases_antartida.dat
# Python to transform from a given stations list format to standard 'OBSstations.csv'
# From L. Fita work in different places: CCRC (Australia), LMD (France)
# More information at: http://www.xn--llusfb-5va.cat/python/PyNCplot
#
# pyNCplot and its component nc_var.py comes with ABSOLUTELY NO WARRANTY. 
# This work is licendes under a Creative Commons 
#   Attribution-ShareAlike 4.0 International License (http://creativecommons.org/licenses/by-sa/4.0)
#
## Python script to indepdententy test different components 
## L. Fita, CIMA. 
####### ####### ##### ##### #### ### ## #

from optparse import OptionParser
import numpy as np
from netCDF4 import Dataset as NetCDFFile
import os
import re
import subprocess as sub
import numpy.ma as ma
import matplotlib as mpl
mpl.use('Agg')
from matplotlib.pylab import *
import matplotlib.pyplot as plt
from mpl_toolkits.basemap import Basemap

# Importing generic tools file 'generic_tools.py' and the others
import generic_tools as gen
import nc_var_tools as ncvar
import drawing_tools as drw
import diag_tools as diag
import geometry_tools as geo

# Importing Fortran modules and the others
import module_ForDef as fdef
import module_ForDiag as fdiag
import module_ForGen as fgen
import module_ForSci as fsci

parser = OptionParser()
parser.add_option("-f", "--StFile", dest="Stfile", help="File with the stations values", metavar="FILENAME")
parser.add_option("-d", "--DescFile", dest="descfile", help="File with the description of the content", metavar="FILENAME")
(opts, args) = parser.parse_args()

main = 'to_OBSstation.py'
#######    #######
## MAIN
    #######
# Expected description values
descstvals = ['station_name', 'WMOid', 'longitude', 'lon_deg', 'lon_min', 'lon_sec', \
  'latitude', 'lat_deg', 'lat_min', 'lat_sec', 'height', 'prov', 'country',          \
  'nice_name', 'add1', 'add2']
DESCstvals = {'station_name': ['S'], 'WMOid': ['I'], 'longitude': ['F'],             \
  'lon_deg': ['I'], 'lon_min': ['I'], 'lon_sec': ['F'],  'latitude': ['F'],          \
  'lat_deg': ['I'], 'lat_min': ['I'], 'lat_sec': ['F'], 'height': ['F'],            \
  'prov': ['S'], 'country': ['S'], 'nice_name': ['S'], 'add1': ['S'], 'add2': ['S']}
directdescstvals = ['station_name', 'WMOid', 'height', 'prov', 'country',            \
  'nice_name', 'add1', 'add2']

# Non numeric values
NOnum = ['sepchar', 'spacec']

ofile = 'sub_OBSstations.csv'

# Reading description 
of = open(opts.descfile, 'r')
vals = {}
for line in of:
    if len(line) > 2 and line[0:1] != '#':
        linevals = line.replace('\n','').replace('\t','').replace('\r',              \
          '').replace(' ','').split('=')
        if not gen.searchInlist(NOnum, linevals[0]):
            vals[linevals[0]] = int(linevals[1])
        else:
            vals[linevals[0]] = linevals[1]

of.close()

lvals = list(vals.keys())
if not gen.searchInlist(lvals, 'sepchar'):
    print gen.errormsg
    print '  ' + main + ": no split character provided !!"
    print "    description file '" + opts.descfile + "' must content one entry as "+ \
      "sepchar = [char] !!"
    quit(-1)
if not gen.searchInlist(lvals, 'Sspacechar'): vals['Ssepchar'] = '!'

spacec = vals['Ssepchar']
# Getting values
oof = open(ofile, 'w')
oif = open(opts.Stfile, 'r')
for line in oif:
    stval = {}
    if len(line) > 2 and line[0:1] != '#':
        linevals = line.replace('\n','').replace('\t','').replace('\r',              \
          '')
        linev = linevals.split(vals['sepchar'])

        if vals.has_key(descstvals[2]) and not vals.has_key(descstvals[3]):
            ic = vals[descstvals[2]]
            av = np.float(linev[ic])
            DMS = gen.angle_DegMinSec(av)
            stval[descstvals[2]] = av
            for i in range(3): stval[descstvals[3+i]] = DMS[i]

        if vals.has_key(descstvals[3]) and not vals.has_key(descstvals[2]):
            ic = vals[descstvals[3]]
            DMS = [int(linev[ic]), int(linev[ic+1]), np.float(linev[ic+2])] 
            av = gen.DegMinSec_angle(DMS[0], DMS[1], DMS[2])
            stval[descstvals[2]] = av
            for i in range(3): stval[descstvals[3+i]] = DMS[i]

        if vals.has_key(descstvals[6]) and not vals.has_key(descstvals[7]):
            ic = vals[descstvals[6]]
            av = np.float(linev[ic])
            DMS = gen.angle_DegMinSec(av)
            stval[descstvals[6]] = lonv
            for i in range(3): stval[descstvals[7+i]] = DMS[i]

        if vals.has_key(descstvals[7]) and not vals.has_key(descstvals[6]):
            ic = vals[descstvals[7]]
            DMS = [int(linev[ic]), int(linev[ic+1]), np.float(linev[ic+2])] 
            av = gen.DegMinSec_angle(DMS[0], DMS[1], DMS[2])
            stval[descstvals[6]] = av
            for i in range(3): stval[descstvals[7+i]] = DMS[i]

        for Sd in directdescstvals:
            Ddescv = DESCstvals[Sd]
            if vals.has_key(Sd):
                ic = vals[Sd]
                stval[Sd] = gen.typemod(linev[ic].replace(spacec, '!'), Ddescv[0])
            else:
                if Ddescv[0] == 'S': missval = '-'
                elif Ddescv[0] == 'I': missval = gen.fillValueI
                elif Ddescv[0] == 'F': missval = gen.fillValueF
                stval[Sd] = missval

        Sline = ''
        for Sd in descstvals:
            if Sd == descstvals[0]: Sline = stval[Sd]
            else: Sline = Sline + ',' + str(stval[Sd])

        oof.write(Sline+'\n')

oif.close()
oof.close()

print main + ": successfull written of file '" + ofile + "' !!"


#quit()