# L. Fita, CIMA. November 2018 # Compilation of all required Fortran modules in CIMA's `tupa' with gcc compilers and anaconda environment # NOTE: One will not be able to compile all the set of programs within an anaconda environment # due to problems with anaconda. Installation of netcdf4 colides with installed libnetcdff # - netcdf4 # The following packages will be downloaded: # # package | build # ---------------------------|----------------- # libnetcdf-4.6.1 | h10edf3e_2 1.3 MB # # The following NEW packages will be INSTALLED: # # netcdf4: 1.4.2-py27h4b4f87f_0 # # The following packages will be REMOVED: # # libnetcdff: 4.4.4-0 matthewharrison # # The following packages will be UPDATED: # # libnetcdf: 4.4.0-hf6ef953_0 matthewharrison --> 4.6.1-h10edf3e_2 ##### # Because of that, Makefile is splitted in two compilation sub-sets ## # $ make pymods: compilation of Fortran modules used in the python scripts # $ make NCfortran: compiation of Fortran modules and main programs which require # netCDF-fortran interface: (for: DistriCorrection and trajectories_overlap) # $ make: compiles all components ## # A following python 'library' creation is required ## Compilation # make >& run_make.log FC = gfortran FCF = -c LIB_INC = RM = rm -f F2PY = /home/lluis.fita/anaconda2/bin/f2py F2PYF = DBGFLAGS = -g -Wall -Wextra -Warray-temporaries -Wconversion -fimplicit-none -fbacktrace -ffree-line-length-0 #-fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan NCLIBFOLD = /home/lluis.fita/anaconda2/lib NCINCFOLD = /home/lluis.fita/anaconda2/include NCLIBFFOLD = /home/lluis.fita/anaconda2/lib NCINCFFOLD = /home/lluis.fita/anaconda2/include LIB_NETCDF = -L$(NCLIBFOLD) -L$(NCLIBFFOLD) -lnetcdff -lnetcdf -I$(NCINCFOLD) -I$(NCINCFFOLD) FCFLAGS = $(FCF) #$(DBGFLAGS) # Sources for f2py srcs = module_definitions.f90 module_basic.f90 module_generic.f90 module_scientific.f90 distrisrcs = $(srcs) module_DistriCorrection.f90 diagsrcs = $(srcs) module_ForDiagnosticsVars.f90 module_ForDiagnostics.f90 intsrcs = $(srcs) module_ForInterpolate.f90 scisrcs = $(srcs) defsrcs = module_definitions.f90 ####### ###### ##### #### ### ## # MODULES = \ module_definitions.o \ module_basic.o \ module_generic.o \ module_scientific.o \ module_ForInterpolate.o \ module_ForDiagnosticsVars.o \ module_ForDiagnostics.o FINTMODULES = \ module_definitions.o \ module_basic.o \ module_generic.o \ module_scientific.o \ module_ForInterpolate.o FEXECMODULES = \ module_definitions.o \ module_basic.o \ module_generic.o \ module_scientific.o \ module_NCgeneric.o \ module_ForInterpolate.o \ module_DistriCorrection.o all : \ module_ForDiagnostics.o \ interpolate.o \ DistriCorrection.o \ pydistrimods.o \ pydiagmods.o \ pyintmods.o \ pyscimods.o \ pydefmods.o \ trajectories_overlap.o pymods : \ module_ForDiagnostics.o \ pydistrimods.o \ pydiagmods.o \ pyintmods.o \ pyscimods.o \ pydefmods.o NCfortran : \ module_definitions.o \ module_basic.o \ module_generic.o \ module_NCgeneric.o \ module_ForInterpolate.o \ DistriCorrection.o \ trajectories_overlap.o diags : \ module_ForDiagnostics.o clean : $(RM) *.mod *.o interpolate module_ForDiag.so module_ForInt.so module_ForDistriCorrect.so module_ForSci.so module_ForDef.so ######## ####### ## ######## module_definitions.o: $(FC) $(FCFLAGS) module_definitions.f90 module_basic.o: module_definitions.o $(FC) $(FCFLAGS) module_basic.f90 module_generic.o: module_definitions.o module_basic.o $(FC) $(FCFLAGS) $(LIB_INC) module_generic.f90 module_NCgeneric.o: module_definitions.o module_basic.o module_generic.o $(FC) $(FCFLAGS) $(LIB_NETCDF) $(LIB_INC) module_NCgeneric.f90 module_scientific.o: module_definitions.o module_basic.o module_generic.o $(FC) $(FCFLAGS) module_scientific.f90 module_ForInterpolate.o: module_definitions.o module_generic.o $(FC) $(FCFLAGS) $(LIB_INC) module_ForInterpolate.f90 module_ForDiagnosticsVars.o: module_definitions.o module_basic.o module_generic.o module_scientific.o $(FC) $(FCFLAGS) $(LIB_INC) module_ForDiagnosticsVars.f90 module_ForDiagnostics.o: module_definitions.o module_basic.o module_generic.o module_ForDiagnosticsVars.o $(FC) $(FCFLAGS) $(LIB_INC) module_ForDiagnostics.f90 module_DistriCorrection.o: module_definitions.o module_basic.o module_generic.o module_scientific.o $(FC) $(FCFLAGS) module_DistriCorrection.f90 FCEXEFINTCFLAGS = $(FINTMODULES) $(LIB_NETCDF) $(LIB_INC) FCEXECFLAGS = $(FEXECMODULES) $(LIB_NETCDF) $(LIB_INC) interpolate.o: module_definitions.o module_basic.o module_generic.o module_scientific.o module_ForInterpolate.o $(FC) $(FCEXEFINTCFLAGS) interpolate.f90 -o interpolate DistriCorrection.o: module_definitions.o module_basic.o module_generic.o module_NCgeneric.o module_scientific.o module_DistriCorrection.o $(FC) $(FCEXECFLAGS) DistriCorrection.f90 -o DistriCorrection pydistrimods.o: $(F2PY) -c $(F2PYF) -I$(NCINCFOLD) -m module_ForDistriCorrect $(distrisrcs) -L$(NCLIBFOLD) pydiagmods.o: $(F2PY) -c $(F2PYF) -I$(NCINCFOLD) -m module_ForDiag $(diagsrcs) -L$(NCLIBFOLD) pyintmods.o: $(F2PY) -c $(F2PYF) -I$(NCINCFOLD) -m module_ForInt $(intsrcs) -L$(NCLIBFOLD) pyscimods.o: $(F2PY) -c $(F2PYF) -I$(NCINCFOLD) -m module_ForSci $(scisrcs) -L$(NCLIBFOLD) pydefmods.o: $(F2PY) -c $(F2PYF) -I$(NCINCFOLD) -m module_ForDef $(defsrcs) -L$(NCLIBFOLD) trajectories_overlap.o: module_definitions.o module_basic.o module_generic.o module_NCgeneric.o module_scientific.o $(FC) $(FCEXECFLAGS) trajectories_overlap.f90 -o trajectories_overlap