# L. Fita, LMD. October 2016 # Compilation of all required Fortran modules in `camelot' with gcc compilers # A following python 'library' creation is required # FOLLOWING: http://stackoverflow.com/questions/17156125/f2py-exposing-parameters-from-used-modules # FOLLOWING: http://osdir.com/ml/python.f2py.user/2006-08/msg00019.html # module load gnu/4.4.7 # module load python/2.7-anaconda # export LD_LIBRARY_PATH=/opt/anaconda/lib/:$LD_LIBRARY_PATH # Diagnostics compilation _______ # f2py -m module_ForDiag -h module_ForDiag.pyf module_generic.f90 module_ForDiagnosticsVars.f90 module_ForDiagnostics.f90 >& run_f2py_ForDiag_wrapper.log # make # f2py -L/opt/anaconda/lib/ -m module_ForDiag -c --fcompiler=gnu95 module_ForDiag.pyf module_generic.f90 module_ForDiagnosticsVars.f90 module_ForDiagnostics.f90 >& run_f2py_ForDiag_compile.log # Interpolation compilation _______ # f2py -m module_ForInt -h module_ForInt.pyf module_generic.f90 module_ForInterpolate.f90 >& run_f2py_ForInt_wrapper.log # f2py -L/opt/anaconda/lib/ -m module_ForInt -c --fcompiler=gnu95 module_ForInt.pyf module_generic.f90 module_ForInterpolate.f90 >& run_f2py_ForInt_compile.log # # using netcdf4.3.3.1gfortran ## module load netcdf4/4.3.3.1-gfortran FC = /usr/bin/gfortran FCF = -c -fPIC LIB_INC = RM = rm -f F2PY = /opt/canopy-1.3.0/Canopy_64bit/User/bin/f2py -L/opt/anaconda/lib/ --fcompiler=gnu95 #DBGFLAGS = -g -Wall -Wextra -Warray-temporaries -Wconversion -fimplicit-none -fbacktrace -ffree-line-length-0 -fcheck=all -ffpe-trap=zero,overflow,underflow -finit-real=nan NCLIBFOLD = /opt/netcdf43/gfortran/bin/ NCINCFOLD = /opt/netcdf43/gfortran/include/ LIB_NETCDF = -L$(NCLIBFOLD) -lnetcdff -lnetcdf -I$(NCINCFOLD) -static-libgfortran FCFLAGS = $(FCF) $(DBGFLAGS) # Sources for f2py srcs = module_definitions.f90 module_basic.f90 module_generic.f90 module_scientific.f90 distrisrcs = $(srcs) module_DistriCorrection.f90 diagsrcs = $(srcs) module_ForDiagnosticsVars.f90 module_ForDiagnostics.f90 intsrcs = $(srcs) module_ForInterpolate.f90 scisrcs = $(srcs) defsrcs = module_definitions.f90 ####### ###### ##### #### ### ## # MODULES = \ module_definitions.o \ module_basic.o \ module_generic.o \ module_NCgeneric.o \ module_scientific.o \ module_ForInterpolate.o \ module_ForDiagnosticsVars.o \ module_ForDiagnostics.o \ module_DistriCorrection.o FINTMODULES = \ module_definitions.o \ module_basic.o \ module_generic.o \ module_scientific.o \ module_ForInterpolate.o all : \ module_ForDiagnostics.o \ interpolate.o \ DistriCorrection.o \ pydistrimods.o \ pydiagmods.o \ pyintmods.o \ pyscimods.o \ pydefmods.o \ trajectories_overlap.o diags : \ module_ForDiagnostics.o clean : $(RM) *.mod *.o interpolate module_ForDiag.so module_ForInt.so module_ForDistriCorrect.so module_ForSci.so module_ForDef.so ######## ####### ## ######## module_definitions.o: $(FC) $(FCFLAGS) module_definitions.f90 module_basic.o: module_definitions.o $(FC) $(FCFLAGS) module_basic.f90 module_generic.o: module_definitions.o module_basic.o $(FC) $(FCFLAGS) $(LIB_INC) module_generic.f90 module_NCgeneric.o: module_definitions.o module_basic.o module_generic.o $(FC) $(FCFLAGS) $(LIB_NETCDF) $(LIB_INC) module_NCgeneric.f90 module_scientific.o: module_definitions.o module_basic.o module_generic.o $(FC) $(FCFLAGS) module_scientific.f90 module_ForInterpolate.o: module_definitions.o module_generic.o $(FC) $(FCFLAGS) $(LIB_INC) module_ForInterpolate.f90 module_ForDiagnosticsVars.o: module_definitions.o module_basic.o module_generic.o $(FC) $(FCFLAGS) $(LIB_INC) module_ForDiagnosticsVars.f90 module_ForDiagnostics.o: module_definitions.o module_basic.o module_generic.o module_ForDiagnosticsVars.o $(FC) $(FCFLAGS) $(LIB_INC) module_ForDiagnostics.f90 module_DistriCorrection.o: module_definitions.o module_basic.o module_generic.o module_scientific.o $(FC) $(FCFLAGS) module_DistriCorrection.f90 FCEXEFINTCFLAGS = $(FINTMODULES) $(LIB_NETCDF) $(LIB_INC) FCEXECFLAGS = $(MODULES) $(LIB_NETCDF) $(LIB_INC) interpolate.o: module_definitions.o module_basic.o module_generic.o module_scientific.o module_ForInterpolate.o $(FC) $(FCEXEFINTCFLAGS) interpolate.f90 -o interpolate DistriCorrection.o: module_definitions.o module_basic.o module_generic.o module_NCgeneric.o module_scientific.o module_DistriCorrection.o $(FC) $(FCEXECFLAGS) DistriCorrection.f90 -o DistriCorrection pydistrimods.o: $(F2PY) -c -I$(NCINCFOLD) -m module_ForDistriCorrect $(distrisrcs) -L$(NCLIBFOLD) pydiagmods.o: $(F2PY) -c -I$(NCINCFOLD) -m module_ForDiag $(diagsrcs) -L$(NCLIBFOLD) pyintmods.o: $(F2PY) -c -I$(NCINCFOLD) -m module_ForInt $(intsrcs) -L$(NCLIBFOLD) pyscimods.o: $(F2PY) -c -I$(NCINCFOLD) -m module_ForSci $(scisrcs) -L$(NCLIBFOLD) pydefmods.o: $(F2PY) -c -I$(NCINCFOLD) -m module_ForDef $(defsrcs) -L$(NCLIBFOLD) trajectories_overlap.o: module_definitions.o module_basic.o module_generic.o module_NCgeneric.o module_scientific.o $(FC) $(FCEXECFLAGS) trajectories_overlap.f90 -o trajectories_overlap