Index: branches/LMDZ_WRFmeas/WRFV3/configure.serial_lmdz2wrf.lmd_WRFmeas.wrf
===================================================================
--- branches/LMDZ_WRFmeas/WRFV3/configure.serial_lmdz2wrf.lmd_WRFmeas.wrf	(revision 416)
+++ branches/LMDZ_WRFmeas/WRFV3/configure.serial_lmdz2wrf.lmd_WRFmeas.wrf	(revision 416)
@@ -0,0 +1,522 @@
+# configure.wrf
+#
+# This file was automatically generated by the configure script in the
+# top level directory. You may make changes to the settings in this
+# file but be aware they will be overwritten each time you run configure.
+# Ordinarily, it is necessary to run configure once, when the code is
+# first installed.
+#
+# To permanently change options, change the settings for your platform
+# in the file arch/configure.defaults then rerun configure.
+#
+SHELL           =       /bin/sh
+DEVTOP          =       `pwd`
+LIBINCLUDE      =       .
+.SUFFIXES: .F .i .o .f90 .c
+
+#### Get core settings from environment (set in compile script)
+#### Note to add a core, this has to be added to.
+
+COREDEFS = -DEM_CORE=$(WRF_EM_CORE) \
+           -DNMM_CORE=$(WRF_NMM_CORE) -DNMM_MAX_DIM=2600 \
+	   -DCOAMPS_CORE=$(WRF_COAMPS_CORE) \
+	   -DDA_CORE=$(WRF_DA_CORE) \
+           -DEXP_CORE=$(WRF_EXP_CORE)
+
+#### Single location for defining total number of domains.  You need
+#### at least 1 + 2*(number of total nests).  For example, 1 coarse
+#### grid + three fine grids = 1 + 2(3) = 7, so MAX_DOMAINS=7.
+
+MAX_DOMAINS	=	21
+
+#### DM buffer length for the configuration flags.
+
+CONFIG_BUF_LEN	=	32768
+
+#### Size of bitmasks (in 4byte integers) of stream masks for WRF I/O
+
+MAX_HISTORY = 25
+
+IWORDSIZE = 4
+DWORDSIZE = 8
+LWORDSIZE = 4
+
+##############################################################################
+#### The settings in this section are defaults that may be overridden by the 
+#### architecture-specific settings in the next section.  
+##############################################################################
+
+##############################################################################
+#### NOTE:  Do not modify these default values here.  To override these 
+####        values, make changes after "Architecture specific settings".  
+##############################################################################
+
+#### Native size (in bytes) of Fortran REAL data type on this architecture ####
+#### Note:  to change real wordsize (for example, to promote REALs from 
+####        4-byte to 8-byte), modify the definition of RWORDSIZE in the 
+####        section following "Architecture specific settings".  Do not 
+####        change NATIVE_RWORDSIZE as is it architecture-specific.  
+NATIVE_RWORDSIZE = 4
+
+#### Default sed command and script for Fortran source files ####
+#SED_FTN = sed -f $(WRF_SRC_ROOT_DIR)/arch/standard.sed
+SED_FTN = $(WRF_SRC_ROOT_DIR)/tools/standard.exe
+
+# Hack to work around $(PWD) not changing during OSF1 build.  
+# $(IO_GRIB_SHARE_DIR) is reset during the OSF1 build only.  
+IO_GRIB_SHARE_DIR = 
+
+#### ESMF switches                 ####
+#### These are set up by Config.pl ####
+# switch to use separately installed ESMF library for coupling:  1==true
+ESMF_COUPLING       = 0
+# select dependences on module_utility.o
+ESMF_MOD_DEPENDENCE = $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90/module_utility.o
+# select -I options for external/io_esmf vs. external/esmf_time_f90
+ESMF_IO_INC         = -I$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90
+# select -I options for separately installed ESMF library, if present
+ESMF_MOD_INC        =  $(ESMF_IO_INC)
+# select cpp token for external/io_esmf vs. external/esmf_time_f90
+ESMF_IO_DEFS        = 
+# select build target for external/io_esmf vs. external/esmf_time_f90
+ESMF_TARGET         = esmf_time
+
+##############################################################################
+
+LIBWRFLIB = libwrflib.a
+
+
+#### Architecture specific settings ####
+
+# Settings for x86_64 Linux, gfortran compiler with gcc   (serial)
+#
+DMPARALLEL      =        1
+OMPCPP          =       # -D_OPENMP
+OMP             =       # -fopenmp
+OMPCC           =       # -fopenmp
+SFC             =       gfortran
+SCC             =       gcc
+CCOMP           =       gcc
+DM_FC           =       mpif90 -f90=$(SFC)
+DM_CC           =       mpicc -cc=$(SCC)
+FC              =        $(SFC)
+CC              =       $(SCC) -DFSEEKO64_OK 
+LD              =       $(FC)
+RWORDSIZE       =       $(NATIVE_RWORDSIZE)
+PROMOTION       =       # -fdefault-real-8  # uncomment manually
+ARCH_LOCAL      =       -DNONSTANDARD_SYSTEM_SUBR
+CFLAGS_LOCAL    =       -w -O3 -c -DLANDREAD_STUB
+LDFLAGS_LOCAL   =       
+CPLUSPLUSLIB    =       
+ESMF_LDFLAG     =       $(CPLUSPLUSLIB)
+FCOPTIM         =       -O3 -ftree-vectorize -ftree-loop-linear -funroll-loops
+FCREDUCEDOPT	=       $(FCOPTIM)
+FCNOOPT		=       -O0
+FCDEBUG         =       # -g $(FCNOOPT)
+FORMAT_FIXED    =       -ffixed-form
+FORMAT_FREE     =       -ffree-form -ffree-line-length-none
+FCSUFFIX        =       
+BYTESWAPIO      =       -fconvert=big-endian -frecord-marker=4
+FCBASEOPTS_NO_G =       -w $(FORMAT_FREE) $(BYTESWAPIO)
+FCBASEOPTS      =       $(FCBASEOPTS_NO_G) $(FCDEBUG)
+MODULE_SRCH_FLAG =     
+TRADFLAG        =      -traditional
+CPP             =      /lib/cpp -C -P
+AR              =      ar
+ARFLAGS         =      ru
+M4              =      m4 -G
+RANLIB          =      ranlib
+CC_TOOLS        =      $(SCC) 
+
+###########################################################
+######################
+# POSTAMBLE
+
+FGREP = fgrep -iq
+
+ARCHFLAGS       =    $(COREDEFS) -DIWORDSIZE=$(IWORDSIZE) -DDWORDSIZE=$(DWORDSIZE) -DRWORDSIZE=$(RWORDSIZE) -DLWORDSIZE=$(LWORDSIZE) \
+                     $(ARCH_LOCAL) \
+                     $(DA_ARCHFLAGS) \
+                      -DDM_PARALLEL \
+                      -DSTUBMPI \
+                      -DNETCDF \
+                      -DLMDZ \
+                      -DWRFMEAS \
+                       \
+                       \
+                       \
+                       \
+                       \
+                       \
+                      -DUSE_ALLOCATABLES \
+                      -DGRIB1 \
+                      -DINTIO \
+                      -DLIMIT_ARGS \
+                      -DCONFIG_BUF_LEN=$(CONFIG_BUF_LEN) \
+                      -DMAX_DOMAINS_F=$(MAX_DOMAINS) \
+                      -DMAX_HISTORY=$(MAX_HISTORY) \
+		      -DNMM_NEST=$(WRF_NMM_NEST)
+CFLAGS          =    $(CFLAGS_LOCAL) -DDM_PARALLEL -DSTUBMPI \
+                      -DMAX_HISTORY=$(MAX_HISTORY)
+FCFLAGS         =    $(FCOPTIM) $(FCBASEOPTS)
+ESMF_LIB_FLAGS  =    
+ ESMF_IO_LIB     =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
+ESMF_IO_LIB_EXT =    -L$(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 -lesmf_time
+INCLUDE_MODULES =    $(MODULE_SRCH_FLAG) \
+                     $(ESMF_MOD_INC) $(ESMF_LIB_FLAGS) \
+                      -I$(WRF_SRC_ROOT_DIR)/main \
+                      -I$(WRF_SRC_ROOT_DIR)/external/io_netcdf \
+                      -I$(WRF_SRC_ROOT_DIR)/external/io_int \
+                      -I$(WRF_SRC_ROOT_DIR)/frame \
+                      -I$(WRF_SRC_ROOT_DIR)/share \
+                      -I$(WRF_SRC_ROOT_DIR)/phys \
+                      -I$(WRF_SRC_ROOT_DIR)/chem -I$(WRF_SRC_ROOT_DIR)/inc \
+                      -I$(NETCDFPATH)/include \
+                      -I$(WRF_SRC_ROOT_DIR)/lmdz
+                      
+REGISTRY        =    Registry
+
+ LIB_BUNDLED     = \
+                      $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5/libfftpack.a \
+                      $(WRF_SRC_ROOT_DIR)/external/io_grib1/libio_grib1.a \
+                      $(WRF_SRC_ROOT_DIR)/external/io_grib_share/libio_grib_share.a \
+                      $(WRF_SRC_ROOT_DIR)/external/io_int/libwrfio_int.a \
+                      $(ESMF_IO_LIB) \
+                      $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a \
+                      $(WRF_SRC_ROOT_DIR)/frame/module_internal_header_util.o \
+                      $(WRF_SRC_ROOT_DIR)/frame/pack_utils.o 
+
+ LIB_EXTERNAL    = \
+                      -L$(WRF_SRC_ROOT_DIR)/external/io_netcdf -lwrfio_nf -L${HOME}/bin/gcc_netcdf-4.3.0/lib  -lnetcdf -lnetcdff $(WRF_SRC_ROOT_DIR)/lmdz/lmdz.a 
+
+LIB             =    $(LIB_BUNDLED) $(LIB_EXTERNAL) $(LIB_LOCAL)
+LDFLAGS         =    $(OMP) $(FCFLAGS) $(LDFLAGS_LOCAL) 
+ENVCOMPDEFS     =    
+WRF_CHEM	=	0 
+CPPFLAGS        =    $(ARCHFLAGS) $(ENVCOMPDEFS) -I$(LIBINCLUDE) $(TRADFLAG) 
+NETCDFPATH      =    ${HOME}/bin/gcc_netcdf-4.3.0
+PNETCDFPATH     =    
+
+bundled:  wrf_ioapi_includes wrfio_grib_share wrfio_grib1 wrfio_int esmf_time fftpack 
+external:  wrfio_nf   $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a gen_comms_rsllite module_dm_rsllite $(ESMF_TARGET)
+
+lmdza: $(WRF_SRC_ROOT_DIR)/lmdz/lmdz.a
+
+######################
+externals: bundled external
+
+gen_comms_serial :
+	( /bin/rm -f $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c )
+
+module_dm_serial :
+	( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; cat module_dm_stubs.F >> module_dm.F ; fi )
+
+gen_comms_rsllite :
+	( if [ ! -e $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ] ; then \
+          /bin/cp $(WRF_SRC_ROOT_DIR)/tools/gen_comms_warning $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; \
+          cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/gen_comms.c >> $(WRF_SRC_ROOT_DIR)/tools/gen_comms.c ; fi )
+
+module_dm_rsllite :
+	( if [ ! -e module_dm.F ] ; then /bin/cp module_dm_warning module_dm.F ; \
+          cat $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/module_dm.F >> module_dm.F ; fi )
+
+wrfio_nf : 
+	( cd $(WRF_SRC_ROOT_DIR)/external/io_netcdf ; \
+          make NETCDFPATH="$(NETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
+          CC="$(SCC)" CFLAGS="$(CFLAGS)" \
+          FC="$(SFC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
+
+wrfio_pnf : 
+	( cd $(WRF_SRC_ROOT_DIR)/external/io_pnetcdf ; \
+          make NETCDFPATH="$(PNETCDFPATH)" RANLIB="$(RANLIB)" CPP="$(CPP) $(ARCHFLAGS)" \
+          FC="$(FC) $(PROMOTION) $(FCFLAGS)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
+
+wrfio_grib_share :
+	( cd $(WRF_SRC_ROOT_DIR)/external/io_grib_share ; \
+          make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
+          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive) 
+
+wrfio_grib1 :
+	( cd $(WRF_SRC_ROOT_DIR)/external/io_grib1 ; \
+          make CC="$(SCC)" CFLAGS="$(CFLAGS)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
+          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" archive)
+
+wrfio_grib2 :
+	( cd $(WRF_SRC_ROOT_DIR)/external/io_grib2 ; \
+          make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
+          CPP="$(CPP)" \
+          FC="$(SFC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
+          FIXED="$(FORMAT_FIXED)" archive)
+
+wrfio_int : 
+	( cd $(WRF_SRC_ROOT_DIR)/external/io_int ; \
+          make CC="$(CC)" RM="$(RM)" RANLIB="$(RANLIB)" CPP="$(CPP)" \
+          FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" FGREP="$(FGREP)" \
+          TRADFLAG="$(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ARCHFLAGS="$(ARCHFLAGS)" all )
+
+esmf_time : 
+	( cd $(WRF_SRC_ROOT_DIR)/external/esmf_time_f90 ; \
+          make FC="$(SFC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" \
+          CPP="$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
+
+fftpack :
+	( cd $(WRF_SRC_ROOT_DIR)/external/fftpack/fftpack5 ; \
+          make FC="$(SFC)" FFLAGS="$(PROMOTION) $(FCDEBUG) $(FCBASEOPTS)" RANLIB="$(RANLIB)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
+
+atm_ocn :
+	( cd $(WRF_SRC_ROOT_DIR)/external/atm_ocn ; \
+          make CC="$(SCC)" CFLAGS="$(CFLAGS) " RM="$(RM)" RANLIB="$(RANLIB)" \
+          CPP="$(CPP)" \
+          FC="$(DM_FC) $(PROMOTION) -I. $(FCDEBUG) $(FCBASEOPTS) $(FCSUFFIX)" TRADFLAG="-traditional" AR="$(AR)" ARFLAGS="$(ARFLAGS)" \
+          FIXED="$(FORMAT_FIXED)" )
+
+$(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a :
+	( cd $(WRF_SRC_ROOT_DIR)/external/RSL_LITE ; make CC="$(CC) $(CFLAGS)" \
+          FC="$(FC) $(FCFLAGS) $(PROMOTION) $(BYTESWAPIO)" \
+          CPP="$(CPP) -I. $(ARCHFLAGS) $(TRADFLAG)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" ;\
+          $(RANLIB) $(WRF_SRC_ROOT_DIR)/external/RSL_LITE/librsl_lite.a )
+
+######################
+#	Macros, these should be generic for all machines
+
+LN	=	ln -sf
+MAKE	=	make -i -r
+RM	= 	rm -f
+
+
+# These sub-directory builds are identical across all architectures
+
+wrf_ioapi_includes :
+	( cd $(WRF_SRC_ROOT_DIR)/external/ioapi_share ; \
+          $(MAKE) NATIVE_RWORDSIZE="$(NATIVE_RWORDSIZE)" RWORDSIZE="$(RWORDSIZE)" AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
+
+wrfio_esmf :
+	( cd $(WRF_SRC_ROOT_DIR)/external/io_esmf ; \
+          make FC="$(FC) $(PROMOTION) $(FCDEBUG) $(FCBASEOPTS) $(ESMF_MOD_INC)" \
+          RANLIB="$(RANLIB)" CPP="$(CPP) $(POUND_DEF) " AR="$(AR)" ARFLAGS="$(ARFLAGS)" )
+
+#	There is probably no reason to modify these rules
+
+.F.i:
+	$(RM) $@
+	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.F > $@
+	mv $*.i $(DEVTOP)/pick/$*.f90
+	cp $*.F $(DEVTOP)/pick
+
+.F.o:
+	$(RM) $@
+	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
+	$(SED_FTN) $*.bb | $(CPP) > $*.f90
+	$(RM) $*.b $*.bb
+	@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
+          echo COMPILING $*.F for 4DVAR ; \
+          $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
+          mv $*.f90.tmp $*.f90 ; \
+        fi
+	if $(FGREP) '!$$OMP' $*.f90 ; then \
+          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
+	  $(FC) -o $@ -c $(FCFLAGS) $(OMP) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
+        else \
+          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
+	  $(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $*.f90 ; \
+        fi
+        
+
+.F.f90:
+	$(RM) $@
+	$(SED_FTN) $*.F > $*.b 
+	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b  > $@
+	$(RM) $*.b
+
+.f90.o:
+	$(RM) $@
+	$(FC) -o $@ -c $(FCFLAGS) $(PROMOTION) $(FCSUFFIX) $*.f90
+
+setfeenv.o : setfeenv.c
+	$(RM) $@
+	$(CCOMP) -o $@ -c $(CFLAGS) $(OMPCC) $*.c
+
+.c.o:
+	$(RM) $@
+	$(CC) -o $@ -c $(CFLAGS) $*.c
+
+# A little more adventurous.  Allow full opt on 
+# mediation_integrate.o \
+# shift_domain_em.o \
+# solve_em.o  <-- gets a little kick from SOLVE_EM_SPECIAL too, if defined
+# mediation_feedback_domain.o : mediation_feedback_domain.F
+# mediation_force_domain.o : mediation_force_domain.F
+# mediation_interp_domain.o : mediation_interp_domain.F
+
+# compile these without high optimization to speed compile
+convert_nmm.o : convert_nmm.F
+init_modules_em.o : init_modules_em.F
+input_wrf.o : input_wrf.F
+module_io.o : module_io.F
+module_comm_dm.o : module_comm_dm.F
+module_comm_dm_0.o : module_comm_dm_0.F
+module_comm_dm_1.o : module_comm_dm_1.F
+module_comm_dm_2.o : module_comm_dm_2.F
+module_comm_dm_3.o : module_comm_dm_3.F
+module_comm_nesting_dm.o : module_comm_nesting_dm.F
+module_configure.o : module_configure.F
+module_dm.o : module_dm.F
+module_domain.o : module_domain.F
+module_domain_type.o : module_domain_type.F
+module_alloc_space_0.o : module_alloc_space_0.F
+module_alloc_space_1.o : module_alloc_space_1.F
+module_alloc_space_2.o : module_alloc_space_2.F
+module_alloc_space_3.o : module_alloc_space_3.F
+module_alloc_space_4.o : module_alloc_space_4.F
+module_alloc_space_5.o : module_alloc_space_5.F
+module_alloc_space_6.o : module_alloc_space_6.F
+module_alloc_space_7.o : module_alloc_space_7.F
+module_alloc_space_8.o : module_alloc_space_8.F
+module_alloc_space_9.o : module_alloc_space_9.F
+module_tiles.o : module_tiles.F
+module_fddaobs_rtfdda.o : module_fddaobs_rtfdda.F
+module_initialize.o : module_initialize.F
+module_physics_init.o : module_physics_init.F 
+module_initialize_b_wave.o : module_initialize_b_wave.F
+module_initialize_hill2d_x.o : module_initialize_hill2d_x.F
+module_initialize_quarter_ss.o : module_initialize_quarter_ss.F
+module_initialize_real.o : module_initialize_real.F
+module_initialize_real.o: module_initialize_real.F
+module_initialize_squall2d_x.o : module_initialize_squall2d_x.F
+module_initialize_squall2d_y.o : module_initialize_squall2d_y.F
+module_integrate.o : module_integrate.F
+module_io_mm5.o : module_io_mm5.F
+module_io_wrf.o : module_io_wrf.F
+module_si_io.o : module_si_io.F
+module_state_description.o : module_state_description.F 
+output_wrf.o : output_wrf.F
+solve_interface.o : solve_interface.F
+start_domain.o : start_domain.F
+start_domain_nmm.o : start_domain_nmm.F
+start_em.o : start_em.F
+wrf_bdyin.o : wrf_bdyin.F
+wrf_bdyout.o : wrf_bdyout.F
+wrf_ext_read_field.o : wrf_ext_read_field.F
+wrf_ext_write_field.o : wrf_ext_write_field.F
+wrf_fddaobs_in.o : wrf_fddaobs_in.F
+wrf_histin.o : wrf_histin.F
+wrf_histout.o : wrf_histout.F
+wrf_inputin.o : wrf_inputin.F
+wrf_inputout.o : wrf_inputout.F
+wrf_restartin.o : wrf_restartin.F
+wrf_restartout.o : wrf_restartout.F
+wrf_tsin.o : wrf_tsin.F
+nl_get_0_routines.o : nl_get_0_routines.F
+nl_get_1_routines.o : nl_get_1_routines.F
+nl_set_0_routines.o : nl_set_0_routines.F
+nl_set_1_routines.o : nl_set_1_routines.F
+
+convert_nmm.o \
+init_modules_em.o \
+module_dm.o \
+module_fddaobs_rtfdda.o \
+module_initialize.o \
+module_initialize_b_wave.o \
+module_initialize_hill2d_x.o \
+module_initialize_quarter_ss.o \
+module_initialize_real.o \
+module_initialize_squall2d_x.o \
+module_initialize_squall2d_y.o \
+module_integrate.o \
+module_io_mm5.o \
+module_io_wrf.o \
+module_si_io.o \
+module_tiles.o \
+output_wrf.o \
+solve_interface.o \
+start_domain.o \
+start_domain_nmm.o \
+shift_domain_nmm.o \
+start_em.o \
+wrf_fddaobs_in.o \
+wrf_tsin.o :
+	$(RM) $@
+	$(SED_FTN) $*.F > $*.b 
+	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
+	$(RM) $*.b
+	@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
+          echo COMPILING $*.F for 4DVAR ; \
+          $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
+          mv $*.f90.tmp $*.f90 ; \
+        fi
+	if $(FGREP) '!$$OMP' $*.f90 ; then \
+          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
+	  $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
+        else \
+          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
+	  $(FC) -c $(PROMOTION) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
+        fi
+
+#solve_em.o :
+#	$(RM) $@
+#	$(SED_FTN) $*.F > $*.b 
+#	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $*.b  > $*.f90
+#	$(RM) $*.b
+#	$(FC) -o $@ -c $(FCFLAGS) $(MODULE_DIRS) $(PROMOTION) $(FCSUFFIX) $(SOLVE_EM_SPECIAL) $(OMP) $*.f90
+
+module_sf_ruclsm.o : module_sf_ruclsm.F
+
+module_sf_ruclsm.o :
+	$(RM) $@
+	$(SED_FTN) $*.F > $*.b 
+	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.b  > $*.f90
+	$(RM) $*.b
+	if $(FGREP) '!$$OMP' $*.f90 ; then \
+          echo COMPILING $*.F WITH OMP ; \
+          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITH OMP ; fi ; \
+	  $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $(OMP) $*.f90 ; \
+        else \
+          if [ -n "$(OMP)" ] ; then echo COMPILING $*.F WITHOUT OMP ; fi ; \
+	  $(FC) -c $(PROMOTION) $(FCREDUCEDOPT) $(FCBASEOPTS) $(MODULE_DIRS) $(FCSUFFIX) $*.f90 ; \
+        fi
+
+# compile without OMP
+input_wrf.o \
+module_domain.o \
+module_domain_type.o \
+module_physics_init.o \
+module_io.o \
+wrf_bdyin.o \
+wrf_bdyout.o \
+wrf_ext_read_field.o \
+wrf_ext_write_field.o \
+wrf_histin.o \
+wrf_histout.o \
+wrf_inputin.o \
+wrf_inputout.o \
+wrf_restartin.o \
+wrf_restartout.o \
+module_state_description.o \
+module_alloc_space.o \
+module_alloc_space_0.o \
+module_alloc_space_1.o \
+module_alloc_space_2.o \
+module_alloc_space_3.o \
+module_alloc_space_4.o \
+module_alloc_space_5.o \
+module_alloc_space_6.o \
+module_alloc_space_7.o \
+module_alloc_space_8.o \
+module_alloc_space_9.o \
+module_comm_dm.o \
+module_comm_dm_0.o \
+module_comm_dm_1.o \
+module_comm_dm_2.o \
+module_comm_dm_3.o \
+module_comm_nesting_dm.o \
+module_configure.o :
+	$(RM) $@
+	$(CPP) -I$(WRF_SRC_ROOT_DIR)/inc $(CPPFLAGS) $(OMPCPP) $*.F  > $*.bb
+	$(SED_FTN) $*.bb | $(CPP) > $*.f90
+	@ if echo $(ARCHFLAGS) | $(FGREP) 'DVAR4D'; then \
+          echo COMPILING $*.F for 4DVAR ; \
+          $(WRF_SRC_ROOT_DIR)/var/build/da_name_space.pl $*.f90 > $*.f90.tmp ; \
+          mv $*.f90.tmp $*.f90 ; \
+        fi
+	$(RM) $*.b $*.bb
+	$(FC) -c $(PROMOTION) $(FCSUFFIX) $(FCNOOPT) $(FCBASEOPTS) $(MODULE_DIRS) $*.f90
