Changeset 1556 in lmdz_wrf for trunk

Timestamp:

May 9, 2017, 3:46:27 PM (8 years ago)

Author:

lfita

Message:

Adding:

• fortran-netcdf libraries installation
• compilation of the Fortran code

File:

• trunk/tools/documentation/install.html (modified) (4 diffs)

trunk/tools/documentation/install.html

@@ -14 +14 @@
       <LI>as root</LI>
       <DIV CLASS="codetxt">$ su</DIV>
-      <LI>install subversion, version control packaes</LI>
+      <LI>install subversion, version control packages</LI>
       <DIV CLASS="codetxt"># apt-get install subversion</DIV>
       <LI>install GIT, different paradigm version control</LI>
@@ -23 +23 @@
 
       <LI>get netcdf libraries tools and applications (cdo and nco are also installed maybe not required...)</LI>
-      <DIV CLASS="codetxt"># apt-get install netcdf-bin netcdf-dbg libnetcdf-dev netcdf-doc ncview cdo nco</DIV>
+      <DIV CLASS="codetxt"># apt-get install netcdf-bin netcdf-dbg libnetcdf-dev netcdf-doc libnetcdff-dbg libnetcdff-dev libnetcdff-doc ncview cdo nco</DIV>
 
       <LI>get hdf5</LI>
@@ -34 +34 @@
       <DIV CLASS="codetxt"># apt-get install dvipng</DIV>
 
-      <LI>install netcdf4, python API interface to netCDF files</LI>
+      <LI>install <A CLASS="la" HREF="http://unidata.github.io/netcdf4-python/">netcdf4</A>, python API interface to netCDF files</LI>
         <OL>
           <LI> Some new linux distributions (at least Debian >8) provide the netcdf4 API in the package systems:</LI>
             <DIV CLASS="codetxt"># apt-get install python-netcdf4</DIV>
-          <LI> Otherwise, it can be manually done. Be careful with interferencies with anaconda (some issues on mixture of netcdf libraries have been detected). 
+          <LI> Otherwise, it can be manually done. Be careful with interferences with anaconda (some issues on mixture of netcdf libraries have been detected). Make sure, that if you use anaconda, that the netcdf libraries installed are with netcdf4 capabilities.
           <UL>
             <LI>Following <A CLASS="la" HREF="https://github.com/Unidata/netcdf4-python"  TARGET="_blank">https://github.com/Unidata/netcdf4-python</A>)</LI>
@@ -66 +66 @@
       $ ln -s Makefile.[machine].[compiler] ./Makefile
       </DIV>
-      At the end one should have: 
-      <PRE><CODE>
-      module_ForDiag.so
-      module_ForInt.so
-      </CODE></PRE>
-
+      <LI>In order to create a python 'library' from the fortran codes, one need to follow these steps (example for machine called `foudre')</LI>
+      <OL>
+        <LI>Preparing the fortran-python bridge of the `diagnostics' related module</LI>
+          <DIV CLASS="codetxt">
+            $ f2py -m module_ForDiag -h module_ForDiag.pyf module_generic.F90 module_ForDiagnosticsVars.F90 module_ForDiagnostics.F90 >& run_f2py_ForDiag_wrapper.log
+          </DIV>
+        <LI>Creation of the binary objects of the Fortran codes</LI>
+          <DIV CLASS="codetxt">
+            $ make
+          </DIV>
+        <LI>Creation of the fortran-python `diagnostics' related module</LI>
+          <DIV CLASS="codetxt">
+            $ f2py -m module_ForDiag -c --f90exec=/usr/bin/gfortran-4.7 module_ForDiag.pyf module_generic.F90 module_ForDiagnosticsVars.F90 module_ForDiagnostics.F90 >& run_f2py_ForDiag_compile.log
+          </DIV>
+        <LI>Preparing the fortran-python bridge of the `interpolation' related module</LI>
+          <DIV CLASS="codetxt">
+            $ f2py -m module_ForInt -h module_ForInt.pyf module_generic.F90 module_ForInterpolate.F90  >& run_f2py_ForInt_wrapper.log
+          </DIV>
+        <LI>Creation of the fortran-python `diagnostics' related module</LI>
+          <DIV CLASS="codetxt">
+            $ f2py -m module_ForInt -c --f90exec=/usr/bin/gfortran-4.7 module_ForInt.pyf module_generic.F90 module_ForInterpolate.F90  >& run_f2py_ForInt_compile.log
+          </DIV>
+        <LI>At the end one should have: </LI>
+          <PRE><CODE>
+          module_ForDiag.so
+          module_ForInt.so
+          </CODE></PRE>
+        </OL>
       </OL>