source: lmdz_wrf/trunk/tools/nc_var.py @ 1784

Last change on this file since 1784 was 1742, checked in by lfita, 7 years ago

Fixing example

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1#!/usr/bin/python
2# Python to manage netCDF files.
3# From L. Fita work in different places: CCRC (Australia), LMD (France)
4# More information at: http://www.xn--llusfb-5va.cat/python/PyNCplot
5#
6# pyNCplot and its component nc_var.py comes with ABSOLUTELY NO WARRANTY.
7# This work is licendes under a Creative Commons
8#   Attribution-ShareAlike 4.0 International License (http://creativecommons.org/licenses/by-sa/4.0)
9#
10
11## e.g. # nc_var.py -o lonlat_polygon -f wrfout_d01_1995-01-01_00:00:00 -S star.dat -v XLONG,XLAT
12## e.g. # nc_var.py -o maskvar -f SouthAm_Climzones_masked.nc -S 'geo_em.d01.nc:LANDMASK:Time|0:0' -v region:lon,lat
13## e.g. # nc_var.py -o addDim -S 128 -f SouthAm_Climzones.nc -v Lstring
14## e.g. # nc_var.py -o addVar -S 'reg,Lstring|region_name@name!of!the!regions@-|c' -f SouthAm_Climzones.nc -v regionn
15## e.g. # nc_var.py -o varaddattr -f SouthAm_Climzones.nc -S 'grid_mapping_name|Mercator' -v Mercator
16## e.g. # nc_var.py -o varaddattrk -f SouthAm_Climzones.nc -S 'longitude_of_central_meridian|-60.0|R' -v Mercator
17## e.g. # nc_var.py -o setvar_asciivalues -S 'nombres_zonas.dat' -f SouthAm_Climzones.nc -v regionn
18## e.g. # nc_var.py -o WRF_to_newCF -f wrfout_d01_1995-01-01_00\:00\:00 -S 'XLONG:XLAT:Times:19491201000000:minutes' -v QVAPOR,T2,Q2
19## e.g. # nc_var.py -o reconstruct_matrix_from_vector -f cruncep_halfdeg_1958.nc -S 'nav_lon:nav_lat:-90.:-7.:-67.:15.:latlon:0.5:0.5:0.05' -v all
20
21
22## e.g. ccrc468-17 # ./nc_var.py -v time -f 123/CCRC_NARCliM_Sydney_All_1990-1999_pr10max.nc -o out -S 1:-1
23## e.g. ccrc468-17 # ./nc_var.py -v prac -f xyz/CCRC_NARCliM_Sydney_DAM_1990-1999_prac.nc -o mname -S pluja
24## e.g. ccrc468-17 # ./nc_var.py -v lluis -f CCRC_NARCliM_Sydney_MOM_1990-1999_prac.nc -o addref -S 'prac:standard_name@lluis_variable:long_name@test variable lluis:units@m s-1:0.'
25## e.g. ccrc468-17 # ./nc_var.py -v lluis66 -f ~/UNSW-CCRC-WRF/tools/python/CCRC_NARCliM_Sydney_MOM_1990-1999_prac.nc -o addattr -S 'comment|Lluis Fita-123456'
26## e.g. ccrc468-17 # ./nc_var.py -v lluis66 -f ~/UNSW-CCRC-WRF/tools/python/CCRC_NARCliM_Sydney_MOM_1990-1999_prac.nc -o rmvattr -S 'comment'
27## e.g. acuna # ./nc_var.py -f /d4/lflmd/etudes/WRF_LMDZ/WaquaL/WRF/control/wrfout/wrfout_d01_1979-12-01_00:00:00 -o checkallvars -S 'DateStrLen,Time,soil_layers_stag,bottom_top_stag,bottom_top,west_east_stag,west_east,south_north,south_north_stag:-3,1,2,2,2,-2,-2,-2,-2'
28## e.g. foudre # nc_var.py -f ~/etudes/WRF_LMDZ/tests/wrf_input/AR40.0/wrfout_d01_1979-01-01_00\:00\:00 -o checkallvars -S 'bottom_top_plus1,num_orchidee_soil_levels,lmdz_ksoil_types,DIM0009,DateStrLen,Time,soil_layers_stag,bottom_top_stag,bottom_top,west_east_stag,west_east,south_north,south_north_stag:2,0,0,1,-3,1,2,2,2,-2,-2,-2,-2'
29## e.g. # nc_var.py -o field_stats -f ~/etudes/domains/Polynesie/geo_em.d03.nc -S full -v HGT_M
30## e.g. # nc_var.py -o filter_2dim -S '80,y,x,lon,lat' -f 'tahiti_5m_ll.grd' -v 'z'
31## e.g. # nc_var.py -o selvar -f /home/lluis/PY/met_em.d01.1979-01-01_00:00:00.nc -S 'west_east@XLONG_M,south_north@XLAT_M,num_metgrid_levels@int,Time@Times' -v TT,UU,VV,SKINTEMP
32## e.g. # nc_var.py -o 'Partialmap_Entiremap' -f carteveg5km.nc -S 'longitude,latitude,std,5000.,Goode,Goode_5km.nc' -v vegetation_map
33## e.g. # nc_var.py -o subbasin -f routing.nc -S Caceres,-57.75,-16.25,left
34## e.g. # nc_var.py -o computevar_model -f ~/PY/wrfout_d01_2001-11-11_00:00:00 -S hurs
35## e.g. # nc_var.py -o model_characteristics -f ~/PY/wrfout_d01_2001-11-11_00:00:00 -S WRF
36## e.g. # nc_var.py -o WRF_toCF -f ~/PY/wrfout_d01_2001-11-11_00:00:00 -S XLONG:XLAT:19491201000000:minutes
37## e.g. # nc_var.py -o cleaning_varsfile -f ~/PY/wrfout_d01_2001-11-11_00:00:00 -S T2,XLONG,XLAT,Times
38## e.g. # nc_var.py -o LMDZ_toCF -f LMDZ/AR40/vas_histins_1-1.nc -S 'minutes!since!1949-12-01!00:00:00'
39## e.g. # nc_var.py -o CDO_toCF -f LMDZ/AR40/hfss_reproj-histins.nc
40## e.g. # nc_var.py -o pinterp -f wrfout_d01_2001-11-11_00\:00\:00 -S 100000.:97500.:95000.:92500.:90000.:85000.:80000.:75000.:70000.:65000.:60000.:55000.:50000.:45000.:40000.:35000.:30000.:25000.:20000.:15000.:10000.:5000.:2500.:1000.:500.:250.,1,0 -v WRFt,WRFrh
41## e.g. # nc_var.py -o pinterp -f /media/ExtDiskC_ext4/DATA/etudes/WRF_LMDZ/WaquaL_highres/short_copies/LMDZ/AR40/histins_19790101000000-19790304000000_short.nc -S 100000.:97500.:95000.:92500.:90000.:85000.:80000.:75000.:70000.:65000.:60000.:55000.:50000.:45000.:40000.:35000.:30000.:25000.:20000.:15000.:10000.:5000.:2500.:1000.:500.:250.,1,0 -v temp,ovap
42## e.g. # nc_var.py -o reproject -f analysis/LMDZ/AR40/hurs_histins.nc -S 'lon,lat,analysis/WRF/current/hurs_wrfout.nc,lon,lat,npp,time@time' -v hurs
43## e.g. # nc_var.py -o field_stats_dim -f /home/lluis/PY/wrfout_d01_2001-11-11_00:00:00 -S 'full,None,None,west_east,XLONG,False' -v 'T2'
44## e.g. # nc_var.py -o compute_opersvarsfiles -S 'west_east|XLONG|-1;south_north|XLAT|-1;Time|Times|3@add|wrfout_d01_2001-11-11_00:00:00|T2%west_east|XLONG|-1;south_north|XLAT|-1;Time|Times|3@subc,273.15|wrfout_d01_2001-11-11_00:00:00|None' -v 'tempC,air!temperature,C'
45## e.g. # nc_var.py -o compute_opersvarsfiles -S 'lon|lon|-1;lat|lat|-1;time_counter|time_counter|-1@forwrdderiv,1,1,2|/ccc/store/cont003/gen7593/fitaborl/etudes/DynamicoESM/aquaplanet/AR40/19800101000000-19810101000000/histday.nc|t2m' -v 'tasderiv,x-derivative|of|air|temperature,K
46## e.g. # nc_var.py -o getvars_tofile -S soils_param_Zobler_textXIOS.nc -f soils_param_colorXIOS.nc -v 'soiltext,soiltexttypes'
47## e.g. # nc_var.py -o addVar -S 'lon,lat|mask@mask@1|f' -f new_ORCHIDEE_13PFTmap_2010_cmpi6_LUH2v2h.nc -v mask
48## e.g. # nc_var.py -o setvar_nc -S 'new_ORCHIDEE_13PFTmap_2010_cmpi6_LUH2v2h.nc,maxvegetfrac,veget;0' -f new_ORCHIDEE_13PFTmap_2010_cmpi6_LUH2v2h.nc -v mask
49## e.g. $ nc_var.py -o VarVal_FillValue -S '0.,eq,std' -f new_lai2D.nc -v LAI
50## e.g. # nc_var.py -o rm_FillValue -f new_ORCHIDEE_13PFTmap_2010_cmpi6_LUH2v2h.nc -S 0 -v mask
51## e.g. # nc_var.py -o curve_section -f /home/lluis/PY/test.nc -S 'gridline,x,y,8.,8.,16.,16.,32' -v all
52## e.g. # nc_var.py -o merge_files -S 'plev|plev,time|time:merged.nc' -f 'ncobs/AliceSprings/snd_94326_198201-198201.nc,ncobs/AliceSprings/snd_94326_198202-198202.nc' -v 'plev,time'
53
54from optparse import OptionParser
55import numpy as np
56from netCDF4 import Dataset as NetCDFFile
57import os
58import re
59import nc_var_tools as ncvar
60# Using 'generic_tools.py'
61import generic_tools as gen
62
63# addDim: Operation to add a new dimension in a file
64# addVar: Operation to add a new variable in a file using exisintg dimensions
65# addvals: Function to add values to a given variable at a given dimension
66# CDO_toCF: Function to pass a CDO output file to CF-conventions
67# chdimname: Changing the name of the dimension
68# changevartype: Function to change the type of a variable (when possible)
69# checkallvars: Function to check all variables of a file
70# checkAllValues: Function to check for variables with along all their dimensions with the same value in a file
71# checkNaNs: Function to check for NaN values over all variables in a file
72# chgtimestep: Function to change the values of a given time-step of a variable inside a netCDF for values from a nother file
73# chvarname: Changing the name of the variable
74# cleaning_varsfile: Function to keep a list of varibales from a file
75# compute_deaccum: Function to compute deaccum: deaccumulation of a variable (VAR[t+1]-VAR[t])
76# compute_opersvarsfiles: Function to compute opersvarfiles: operation of variables from different files
77# compute_opervaralltime: Function to compute opervaralltime: operation of variable successible allover the time-steps
78# compute_opervartimes: Function to compute opervartimes: operation of variable for a given sub-set of time-steps
79# compute_tevolboxtraj: Function to compute tevolboxtraj: temporal evolution at a given point along a box following a trajectory
80# computevar_model: Function to provide the way to compute a CF-variable providing its name
81# curve_section: Function to provide a section of a file following a given curve
82# DatesFiles: Function to find different time values on a series of WRF files in a folder
83# DataSetSection: Function to get a section (values along a dimension) of a given data-set
84# DataSetSection_multidims: Function to get a section (values along multiple dimensions) of a given data-set
85# DataSetSection_multivars: Function to get a section (values along multiple variables) of a given data-set
86# DYNAMICO_toCF: Function to pass a DYNAMICO original file to CF-conventions
87# dimToUnlimited: Operation to create an unlimited dimension from an existing one
88# dimVar_creation: Function to add a 1D variable with the size of a given dimension in a file
89# fattradd: Adding attributes from a reference file
90# fdimadd: Adding dimension from another reference file
91# fgaddattr: Adding global attributes from a reference file
92# field_stats: Function to retrieve statistics from a field
93# field_stats_dim: Function to retrieve statistics from a field along dimensions
94# file_creation: Operation to create a file with one variable with a given set of dimensions
95# file_oper_alongdims: Function to operate a file along different dimensions of a variable
96# filter_2dim: Function to filter along 2 dimensions (moving grid-box means of a given size) values of the netCDF file
97# flipdim: flips the value following one dimension
98# fvaradd: Adding variable (and all its attributes and dimensions) from a reference file to a file
99# gaddattrk: Add a global attribute to a netCDF caring about the type. Removes previous attribute if it exist
100# gaddattr: Add a global attribute to a netCDF. Removes previous attribute if it exist
101# get_attribute: Function to get an attribute from a netCDF file
102# get_namelist_vars: Function to get namelist-like  values ([varname] = [value])
103# get_Variables: Function to get a list of variables from an existing file
104# getvalues_lonlat: Function to retrieve the values from the closest grid point to a set of longitude, latitude values
105# getvars_tofile: Function to get variables from a file and pass them to another one
106# grattr: Function to read a global atribute
107# grmattr: Removing a global attribute
108# idims: Give all the dimensions names of a file
109# igattrs: Give all the global attributes of a file
110# increaseDimvar: Function to increase with 1 dimension an existing variable within a netcdf file. Values of
111#   the variable will be repeated along the new dimension
112# isgattrs: Give a single global attribute of a file and its type
113# isvattrs: Give a single attribute of a variable
114# ivars: Give all the variable names of a file
115# ivattrs: Give all the attributes of a variable and its type
116# LMDZ_toCF: Function to pass a LMDZ original file to CF-conventions
117# lonlat_polygon: Function to define a lon/lat region giving the coordinates of the vertexs of a given polygon
118# maskvar: Function to mask a variable using another variable to mask it. Only need to share at least 1 dimension with the same size (no need same name)
119# merge_files: Function to merge variables from two files
120# model_characteristics: Function to provide major characterisitcs of a given model output
121# mthDYNAMICO_toCF: Function to pass a mthDYNAMICO original file to CF-conventions
122# ncreplace: Function to replace something from a netCDF file
123# ncstepdiff: Function to compute differencies between time-steps (deacumulate) a netCDF file
124# netcdf_concatenation: Function to concatenate netCDF files for a given set of variables
125# netcdf_fold_concatenation: Function to concatenate netCDF files in a given folder for a given set of variables
126# netcdf_fold_concatenation_HMT: Function to concatenate netCDF files in a given folder for a given set of variables
127#   giving Header, Middle, Tail for the name files
128# reconstruct_matrix_from_vector: Function to reconstruct a 2D matrix from a pair of syncronized vectors with the positions on x and y coordinates
129# reproject: Function to reproject values to another one
130# rm_FillValue: Operation to remove the _FillValue from a variable inside a netCDF file
131# Partialmap_Entiremap: Function to transform from a partial global map (e.g.: only land points) to an entire one
132#   Coincidence of points is done throughout a first guess from fractions of the total domain of search
133# Partialmap_EntiremapFor: Function to transform from a partial global map (e.g.: only land points) to an entire one
134#   using Fortran code Coincidence of points is done throughout a first guess from fractions of the total domain of search
135# Partialmap_EntiremapForExact: Function to transform from a partial global map (e.g.: only land points) to an entire
136#   one using Fortran code with exact location Coincidence of points is done throughout a first guess from fractions of
137#   the total domain of search
138# pinterp: Function to vertically interpolate using subroutines from the p_interp.F90 NCAR program
139# remapnn: Function to remap to the nearest neightbor a variable using projection from another file
140# seasmean: Function to compute the seasonal mean of a variable
141# sellonlatbox: Function to select a lotlan box from a data-set
142# sellonlatlevbox: Function to select a lotlan box and a given level from a data-set
143# selvar: Function to select a series of variables from a netcdf file. Variables with
144# setvar_asciivalues: Function to set de values of a variable with an ASCII file (common Fortran-like format)
145# setvar_nc: Operation to set values of a variable from values of an other one
146# sorttimesmat: Function to sort the time values of a given file
147# spacemean: Function to retrieve a space mean series from a multidimensional variable of a file
148# SpatialWeightedMean: Function to compute the spatial mean using weights from a netCDF file
149# statcompare_files: Python script to statistically compare two different files
150# subbasin: Function to retrieve the subbasin (all the sub-flows untila a given lon,lat)
151# submns: Function to retrieve a series of months from a file
152# subyrs: Function to retrieve a series of years from a file
153# TimeInf: Function to print all the information from the variable time
154# time_reset: Function to re-set the time axis of a file
155# TimeSplitmat: Function to transform a file with CFtimes to a matrix [Nyear,Nmonth,Nday,Nhour,Nminute,Nsecond]
156# timemean: Function to retrieve a time mean series from a multidimensional variable of a file
157# valmod: Function to modify the value of a variable
158# valmod_dim: Function to modify the value of a variable at a given dimension and value
159# varaddattrk: Add an attribute to a variable caring about the type
160# varaddattr: Add an attribute to a variable. Removes previous attribute if it exists
161# varaddref: Function to add a variable in an existing file copying characteristics from an existing one
162# var_creation: Operation to create a new variable in a file with a given set of dimensions
163# varout: Function when we want to output variable values
164# varrmattr: Removing an attribute from a variable
165# varrm: Removing a variable from a file
166# VarVal_FillValue: Function to transform a given value from a given variable to _FillValue in a netCDF file
167# vrattr: Function to remove an atribute from a variable
168# WRF_d0Nref: Function for the generation of an extra WRF domain from a given one
169# WRF_CFlonlat_creation: Function to add a CF-convention longitude/latitude variables in a WRF file
170# WRF_CFtime_creation: Function to add a CF-convention time unit in a WRF file
171# WRF_CFxtime_creation: Function to add a CF-convention time unit in a WRF file using variable 'XTIME'
172# WRF_toCF: Function to pass a WRF original file to CF-conventions
173# WRF_to_newCF: Function to pass a WRF original file to new CF-conventions file
174
175operations=['addDim', 'addVar', 'addvals', 'CDO_toCF', 'chdimname', 'changevartype', \
176  'checkallvars', 'checkAllValues', 'checkNaNs',                                     \
177  'chgtimestep', 'chvarname', 'cleaning_varsfile', 'compute_deaccum',                \
178  'compute_opersvarsfiles',                                                          \
179  'compute_opervaralltime', 'compute_opervartimes', 'compute_tevolboxtraj',          \
180  'computevar_model', 'curve_section', 'DatesFiles',                                 \
181  'DataSetSection', 'DataSetSection_multidims', 'DataSetSection_multivars',          \
182  'DYNAMICO_toCF', 'dimToUnlimited', 'dimVar_creation',                              \
183  'fattradd',                                                                        \
184  'fdimadd', 'fgaddattr', 'field_stats', 'field_stats_dim', 'file_creation',         \
185  'file_oper_alongdims', 'filter_2dim',                                              \
186  'flipdim', 'fvaradd', 'gaddattrk', 'gaddattr', 'get_attribute',                    \
187  'get_namelist_vars', 'get_Variables',                                              \
188  'getvalues_lonlat', 'getvars_tofile', 'grattr',                                    \
189  'grmattr', 'idims', 'igattrs', 'increaseDimvar', 'isgattrs',                       \
190  'isvattrs', 'ivars', 'ivattrs', 'LMDZ_toCF', 'lonlat_polygon', 'maskvar',          \
191  'merge_files', 'model_characteristics',                                            \
192  'mthDYNAMICO_toCF', 'ncreplace', 'ncstepdiff', 'netcdf_concatenation',             \
193  'netcdf_fold_concatenation',                                                       \
194  'netcdf_fold_concatenation_HMT', 'reproject', 'Partialmap_Entiremap',              \
195  'Partialmap_EntiremapFor', 'Partialmap_EntiremapForExact',                         \
196  'pinterp', 'reconstruct_matrix_from_vector', 'remapnn', 'rm_FillValue',            \
197  'seasmean', 'sellonlatbox', 'sellonlatlevbox', 'selvar', 'setvar_asciivalues',     \
198  'setvar_nc', 'sorttimesmat', 'spacemean', 'SpatialWeightedMean',                   \
199  'statcompare_files',                                                               \
200  'subbasin', 'submns', 'subyrs', 'TimeInf', 'time_reset',                           \
201  'TimeSplitmat', 'timemean', 'valmod', 'valmod_dim','varaddattrk', 'varaddattr',    \
202  'varaddref',                                                                       \
203  'var_creation', 'varout', 'varoutold', 'varrmattr', 'varrm', 'VarVal_FillValue',   \
204  'vrattr', 'WRF_d0Nref',                                                            \
205  'WRF_CFlonlat_creation', 'WRF_CFtime_creation', 'WRF_CFxtime_creation',            \
206  'list_operations', 'WRF_toCF', 'WRF_to_newCF']
207
208### Options
209##string_operation="operation to make: " + '\n' + " out, output values -S inidim1,[inidim2,...]:enddim1,[enddim2,...]"
210string_operation="""operation to make:
211  addgattr, add a new global attribute: addatr -S [attrname]|[attrvalue]
212  addvattr, add a new attribute to any given variable: addatr -S [attrname]|[attrvalue]
213  addref, add a new variable with dimension and attributes from an already existing 'variable ref' in the file and -S [variable ref]:[attr name]@[value]:[[attr2]@[value2], ...]:[value/file with values]  mname, modify name -S newname
214  checkallvalrs: Function to check all variables of a file: -S [dimn1],[[dimn2],...,[dimnN]]:[dim1],[[dim2],...,[dimN]]
215  mname, modify name -S newname
216  out, output values -S inidim1,[inidim2,...]:enddim1,[enddim2,...]
217  valmod, modifiy values of variable -S [modification]:
218     sumc,[constant]: add [constant] to variables values
219     subc,[constant]: substract [constant] to variables values
220     mulc,[constant]: multipy by [constant] to variables values
221     divc,[constant]: divide by [constant] to variables values
222  rmgattr, remove a global attribute: rmgattr -S [attrname]
223  rmvattr, remove an attribute to any given variable: rmvattr -S [attrname]
224"""
225
226#print string_operation
227
228operationnames = "'" + gen.numVector_String(operations, "', '") + "'"
229
230parser = OptionParser()
231parser.add_option("-f", "--netCDF_file", dest="ncfile", help="file to use", 
232  metavar="FILE")
233parser.add_option("-o", "--operation", type='choice', dest="operation", 
234  choices=operations, help="operation to make: " + operationnames, metavar="OPER")
235parser.add_option("-S", "--valueS", dest="values", 
236  help="values to use according to the operation (when applicable); '-h' specific help of the operation", metavar="VALUES")
237parser.add_option("-v", "--variable", dest="varname",
238  help="variable to use (when applicable)", metavar="VAR")
239
240(opts, args) = parser.parse_args()
241
242#if opts.help:
243#  parser.print_help()
244#  print string_operation
245#  sys.exit()
246
247#######    #######
248## MAIN
249    #######
250
251# Operations which file name is not a real file
252NotCheckingFile = ['DatesFiles', 'compute_opersvarsfiles', 'file_creation',          \
253  'list_operations', 'merge_files',                                                  \
254  'model_characteristics', 'netcdf_concatenation', 'netcdf_fold_concatenation',      \
255  'netcdf_fold_concatenation_HMT']
256
257####### ###### ##### #### ### ## #
258errormsg='ERROR -- error -- ERROR -- error'
259
260varn=opts.varname
261oper=opts.operation
262
263if opts.operation is None:
264    print errormsg
265    print '  No operation provided !!'
266    print "  an operation must be provided as '-o [operationname]' "
267    quit(-1)
268
269if opts.ncfile is not None and not os.path.isfile(opts.ncfile) and                   \
270  not gen.searchInlist(NotCheckingFile,oper):
271    print errormsg
272    print '  File ' + opts.ncfile + ' does not exist !!'
273    quit(-1)
274elif opts.ncfile is None and not gen.searchInlist(NotCheckingFile,oper) and          \
275  opts.values != 'h':
276    print errormsg
277    print '  No file provided !!'
278    print "  a file must be provided as '-f [filename]' "
279    quit(-1)
280
281if oper == 'addDim':
282    ncvar.addDim(opts.values, opts.ncfile, opts.varname)
283elif oper == 'addVar':
284    ncvar.addVar(opts.values, opts.ncfile, opts.varname)
285elif oper == 'addvals':
286    ncvar.addvals(opts.values, opts.ncfile, opts.varname)
287elif oper == 'CDO_toCF':
288    ncvar.CDO_toCF(opts.ncfile)
289elif oper == 'chdimname':
290    ncvar.chdimname(opts.values, opts.ncfile)
291elif oper == 'changevartype':
292    ncvar.changevartype(opts.values, opts.ncfile, opts.varname)
293elif oper == 'checkallvars':
294    ncvar.checkallvars(opts.values, opts.ncfile)
295elif oper == 'checkAllValues':
296    ncvar.checkAllValues(opts.values, opts.ncfile)
297elif oper == 'checkNaNs':
298    ncvar.checkNaNs(opts.values, opts.ncfile)
299elif oper == 'chgtimestep':
300    ncvar.chgtimestep(opts.values, opts.ncfile, opts.varname)
301elif oper == 'chvarname':
302    ncvar.chvarname(opts.values, opts.ncfile, opts.varname)
303elif oper == 'cleaning_varsfile':
304    ncvar.cleaning_varsfile(opts.values, opts.ncfile)
305elif oper == 'compute_deaccum':
306    ncvar.compute_deaccum(opts.values, opts.ncfile, opts.varname)
307elif oper == 'compute_opersvarsfiles':
308    ncvar.compute_opersvarsfiles(opts.values, opts.varname)
309elif oper == 'compute_opervaralltime':
310    ncvar.compute_opervaralltime(opts.values, opts.ncfile, opts.varname)
311elif oper == 'compute_opervartimes':
312    ncvar.compute_opervartimes(opts.values, opts.ncfile, opts.varname)
313elif oper == 'compute_tevolboxtraj':
314    ncvar.compute_tevolboxtraj(opts.values, opts.ncfile, opts.varname)
315elif oper == 'computevar_model':
316    ncvar.computevar_model(opts.values, opts.ncfile)
317elif oper == 'curve_section':
318    ncvar.curve_section(opts.values, opts.ncfile, opts.varname)
319elif oper == 'DataSetSection':
320    ncvar.DataSetSection(opts.values, opts.ncfile)
321elif oper == 'DataSetSection_multidims':
322    ncvar.DataSetSection_multidims(opts.values, opts.ncfile, opts.varname)
323elif oper == 'DataSetSection_multivars':
324    ncvar.DataSetSection_multivars(opts.values, opts.ncfile, opts.varname)
325elif oper == 'DatesFiles':
326    ncvar.DatesFiles(opts.values, opts.ncfile, opts.varname)
327elif oper == 'DYNAMICO_toCF':
328    ncvar.DYNAMICO_toCF(opts.values, opts.ncfile)
329elif oper == 'dimToUnlimited':
330    ncvar.dimToUnlimited(opts.values, opts.ncfile)
331elif oper == 'dimVar_creation':
332    ncvar.dimVar_creation(opts.values, opts.ncfile)
333elif oper == 'fattradd':
334    ncvar.fattradd(var, opts.values, opts.ncfile)
335elif oper == 'fdimadd':
336    ncvar.fdimadd(opts.values, opts.ncfile)
337elif oper == 'fgaddattr':
338    ncvar.fgaddattr(opts.values, opts.ncfile)
339elif oper == 'file_creation':
340    ncvar.file_creation(opts.values, opts.ncfile, opts.varname)
341elif oper == 'file_oper_alongdims':
342    ncvar.file_oper_alongdims(opts.values, opts.ncfile, opts.varname)
343elif oper == 'field_stats':
344    ncvar.field_stats(opts.values, opts.ncfile, opts.varname)
345elif oper == 'field_stats_dim':
346    ncvar.field_stats_dim(opts.values, opts.ncfile, opts.varname)
347elif oper == 'filter_2dim':
348    ncvar.filter_2dim(opts.values, opts.ncfile, opts.varname)
349elif oper == 'flipdim':
350    ncvar.flipdim(opts.values, opts.ncfile, opts.varname)
351elif oper == 'fvaradd':
352    ncvar.fvaradd(opts.values, opts.ncfile)
353elif oper == 'gaddattrk':
354    ncvar.gaddattrk(opts.values, opts.ncfile)
355elif oper == 'gaddattr':
356    ncvar.gaddattr(opts.values, opts.ncfile)
357elif oper == 'get_attribute':
358    ncvar.get_attribute(opts.values, opts.ncfile, opts.varname)
359elif oper == 'get_namelist_vars':
360    ncvar.get_namelist_vars(opts.values, opts.ncfile)
361elif oper == 'get_Variables':
362    ncvar.get_Variables(opts.values, opts.ncfile, opts.varname)
363elif oper == 'getvalues_lonlat':
364    ncvar.getvalues_lonlat(opts.values, opts.ncfile)
365elif oper == 'getvars_tofile':
366    ncvar.getvars_tofile(opts.values, opts.ncfile, opts.varname)
367elif oper == 'grattr':
368    ncvar.grattr(opts.values, opts.ncfile)
369elif oper == 'grmattr':
370    ncvar.grmattr(opts.values, opts.ncfile)
371elif oper == 'idims':
372    ncvar.idims(opts.ncfile)
373elif oper == 'igattrs':
374    ncvar.igattrs(opts.ncfile)
375elif oper == 'increaseDimvar':
376    ncvar.increaseDimvar(opts.values, opts.ncfile, opts.varname)
377elif oper == 'isgattrs':
378    ncvar.isgattrs(opts.values, opts.ncfile)
379elif oper == 'isvattrs':
380    ncvar.isvattrs(opts.values, opts.ncfile, opts.varname)
381elif oper == 'ivars':
382    ncvar.ivars(opts.ncfile)
383elif oper == 'ivattrs':
384    ncvar.ivattrs(opts.ncfile, opts.varname)
385elif oper == 'list_operations':
386# From: http://www.diveintopython.net/power_of_introspection/all_together.html
387    object = ncvar
388    for opern in operations:
389        if  opern != 'list_operations': 
390            print opern + '_______ ______ _____ ____ ___ __ _'
391            print getattr(object, opern).__doc__
392elif oper == 'LMDZ_toCF':
393    ncvar.LMDZ_toCF(opts.values, opts.ncfile)
394elif oper == 'lonlat_polygon':
395    ncvar.lonlat_polygon(opts.values, opts.ncfile, opts.varname)
396elif oper == 'maskvar':
397    ncvar.maskvar(opts.values, opts.ncfile, opts.varname)
398elif oper == 'merge_files':
399    ncvar.merge_files(opts.values, opts.ncfile, opts.varname)
400elif oper == 'model_characteristics':
401    ncvar.model_characteristics(opts.values, opts.ncfile)
402elif oper == 'mthDYNAMICO_toCF':
403    ncvar.mthDYNAMICO_toCF(opts.values, opts.ncfile)
404elif oper == 'ncreplace':
405    ncvar.ncreplace(opts.values, opts.ncfile, opts.varname)
406elif oper == 'ncstepdiff':
407    ncvar.ncstepdiff(opts.values, opts.ncfile, opts.varname)
408elif oper == 'netcdf_concatenation':
409    ncvar.netcdf_concatenation(opts.ncfile)
410elif oper == 'netcdf_fold_concatenation':
411    ncvar.netcdf_fold_concatenation(opts.values, opts.ncfile, opts.varname)
412elif oper == 'netcdf_fold_concatenation_HMT':
413    ncvar.netcdf_fold_concatenation_HMT(opts.values, opts.ncfile, opts.varname)
414elif oper == 'opersvarsfiles':
415    ncvar.compute_opersvarsfiles(opts.values, opts.varname)
416elif oper == 'pinterp':
417    ncvar.pinterp(opts.values, opts.ncfile, opts.varname)
418elif oper == 'remapnn':
419    ncvar.remapnn(opts.values, opts.ncfile, opts.varname)
420elif oper == 'Partialmap_Entiremap':
421    ncvar.Partialmap_Entiremap(opts.values, opts.ncfile, opts.varname)
422elif oper == 'Partialmap_EntiremapFor':
423    ncvar.Partialmap_EntiremapFor(opts.values, opts.ncfile, opts.varname)
424elif oper == 'Partialmap_EntiremapForExact':
425    ncvar.Partialmap_EntiremapForExact(opts.values, opts.ncfile, opts.varname)
426elif oper == 'reconstruct_matrix_from_vector':
427    ncvar.reconstruct_matrix_from_vector(opts.values, opts.ncfile, opts.varname)
428elif oper == 'reproject':
429    ncvar.reproject(opts.values, opts.ncfile, opts.varname)
430elif oper == 'rm_FillValue':
431    ncvar.rm_FillValue(opts.values, opts.ncfile, opts.varname)
432elif oper == 'seasmean':
433    ncvar.seasmean(timename, opts.ncfile, opts.varname)
434elif oper == 'sellonlatbox':
435    ncvar.sellonlatbox(opts.values, opts.ncfile, opts.varname)
436elif oper == 'sellonlatlevbox':
437    ncvar.sellonlatlevbox(opts.values, opts.ncfile, opts.varname)
438elif oper == 'selvar':
439    ncvar.selvar(opts.values, opts.ncfile, opts.varname)
440elif oper == 'setvar_asciivalues':
441    ncvar.setvar_asciivalues(opts.values, opts.ncfile, opts.varname)
442elif oper == 'setvar_nc':
443    ncvar.setvar_nc(opts.values, opts.ncfile, opts.varname)
444elif oper == 'sorttimesmat':
445    ncvar.sorttimesmat(opts.ncfile, opts.varname)
446elif oper == 'spacemean':
447    ncvar.spacemean(opts.ncfile, opts.varname)
448elif oper == 'SpatialWeightedMean':
449    ncvar.SpatialWeightedMean(opts.values, opts.ncfile, opts.varname)
450elif oper == 'statcompare_files':
451    ncvar.statcompare_files(opts.values)
452elif oper == 'subbasin':
453    ncvar.subbasin(opts.values, opts.ncfile)
454elif oper == 'submns':
455    ncvar.submns(opts.values, opts.ncfile, opts.varname)
456elif oper == 'subyrs':
457    ncvar.subyrs(opts.values, opts.ncfile, opts.varname)
458elif oper == 'TimeInf':
459    ncvar.TimeInf(opts.ncfile, opts.varname)
460elif oper == 'time_reset':
461    ncvar.time_reset(opts.values, opts.ncfile, opts.varname)
462elif oper == 'TimeSplitmat':
463    ncvar.TimeSplitmat(opts.values, opts.ncfile, opts.varname)
464elif oper == 'timemean':
465    ncvar.timemean(opts.values, opts.ncfile, opts.varname)
466elif oper == 'valmod':
467    ncvar.valmod(opts.values, opts.ncfile, opts.varname)
468elif oper == 'valmod_dim':
469    ncvar.valmod_dim(opts.values, opts.ncfile, opts.varname)
470elif oper == 'varaddattrk':
471    ncvar.varaddattrk(opts.values, opts.ncfile, opts.varname)
472elif oper == 'varaddattr':
473    ncvar.varaddattr(opts.values, opts.ncfile, opts.varname)
474elif oper == 'varaddref':
475    ncvar.varaddref(opts.values, opts.ncfile, opts.varname)
476elif oper == 'var_creation':
477    ncvar.var_creation(opts.values, opts.ncfile, opts.varname)
478elif oper == 'varout':
479    ncvar.varout(opts.values, opts.ncfile, opts.varname)
480elif oper == 'varoutold':
481    ncvar.varoutold(opts.values, opts.ncfile, opts.varname)
482elif oper == 'varrmattr':
483    ncvar.varrmattr(opts.values, opts.ncfile, opts.varname)
484elif oper == 'varrm':
485    ncvar.varrm(opts.ncfile, opts.varname)
486elif oper == 'VarVal_FillValue':
487    ncvar.VarVal_FillValue(opts.values, opts.ncfile, opts.varname)
488elif oper == 'vrattr':
489    ncvar.vrattr(opts.values, opts.ncfile, opts.varname)
490elif oper == 'WRF_d0Nref':
491    ncvar.WRF_d0Nref(opts.values, opts.ncfile)
492elif oper == 'WRF_CFlonlat_creation':
493    ncvar.WRF_CFlonlat_creation(opts.values, opts.ncfile, opts.varname)
494elif oper == 'WRF_CFtime_creation':
495    ncvar.WRF_CFtime_creation(opts.values, opts.ncfile, opts.varname)
496elif oper == 'WRF_CFxtime_creation':
497    ncvar.WRF_CFxtime_creation(opts.values, opts.ncfile, opts.varname)
498elif oper == 'WRF_toCF':
499    ncvar.WRF_toCF(opts.values, opts.ncfile)
500elif oper == 'WRF_to_newCF':
501    ncvar.WRF_to_newCF(opts.values, opts.ncfile, opts.varname)
502else:
503    print errormsg
504    print '   The operation ' + oper + ' is not ready !!'
505    print errormsg
506    quit()
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