source: lmdz_wrf/trunk/tools/documentation/install.html @ 1412

Last change on this file since 1412 was 1356, checked in by lfita, 8 years ago

Fixing `install.html' on getting python4
Including `diagnostics.py'
File size: 3.5 KB
RevLine 
[1273]1<HTML>
2  <HEAD>
3    <META HTTP-EQUIV="Content-Type" CONTENT="text/html; CHARSET=utf-8"/>
4    <LINK REL="stylesheet" TYPE="text/css" HREF="PyNCplot.css"/>
5  </HEAD>
6
7  <!--BODY STYLE="color:rgb(240,240,240);font-size:1em;"-->
8  <BODY CLASS="genintro"> 
9    <H1>Installation guide</H1>
10    A step-by-step instructions to follow in order to install all the required packages and tools. <BR>
11
12    Example of installation in a Debian 8 as root:
13    <OL>
14      <LI>as root</LI>
15      <DIV CLASS="codetxt">$ su</DIV>
16      <LI>install subversion, version control packaes</LI>
17      <DIV CLASS="codetxt"># apt-get install subversion</DIV>
18      <LI>install GIT, different paradigm version control</LI>
19      <DIV CLASS="codetxt"># apt-get install git</DIV>
20
21      <LI>get python and its necessary applications</LI>
22      <DIV CLASS="codetxt"># apt-get install python python-scipy python-numpy cython cython-dbg</DIV>
23
24      <LI>get netcdf libraries tools and applications (cdo and nco are also installed maybe not required...)</LI>
25      <DIV CLASS="codetxt"># apt-get install netcdf-bin netcdf-dbg libnetcdf-dev netcdf-doc ncview cdo nco</DIV>
26
27      <LI>get hdf5</LI>
28      <DIV CLASS="codetxt"># apt-get install libhdf5-dev</DIV>
29
30      <LI>install matplotlib and basemap in order to plot and drow maps</LI>
31      <DIV CLASS="codetxt"># apt-get install python-matplotlib python-matplotlib-data python-matplotlib-doc python-mpltoolkits.basemap python-mpltoolkits.basemap-data</DIV>
32
33      <LI>install system tools (Scripts use L<SUP>A</SUP>T<SUB>E</SUB>X interface for titles and labels)</LI>
34      <DIV CLASS="codetxt"># apt-get install dvipng</DIV>
35
36      <LI>install netcdf4, python API interface to netCDF files (following <A CLASS="la" HREF="https://github.com/Unidata/netcdf4-python"  TARGET="_blank">https://github.com/Unidata/netcdf4-python</A>)</LI>
[1356]37      <DIV CLASS="codetxt"># git clone https://github.com/Unidata/netcdf4-python.git<BR>
[1273]38      cd netcdf4-python/</DIV>
39        <UL>
40        <LI>Editing `setup.cfg' to add/change some values (there are installation issues if `nc-config' is used along installation)</LI>
41        <PRE><CODE>
42use_ncconfig=False
43netCDF4_dir = /usr/local
44HDF5_dir = /usr/local
45HDF5_libdir = /usr/lib/x86_64-linux-gnu/hdf5/serial
46HDF5_INCDIR = /usr/include/hdf5/serial
47</CODE></PRE>
48        </UL>
49      <DIV CLASS="codetxt">
50# python setup.py build >& run_pysetup.log<BR>
51# python setup.py install >& run_pyinstall.log</DIV>
52      <LI>Getting the scripts, no need to be root:</LI>
53      <DIV CLASS="codetxt"># exit<BR>
54      $ cd $HOME <BR>
55      $ svn co http://svn.lmd.jussieu.fr/LMDZ_WRF/trunk/tools PyNCplot</DIV>
56      <LI>Now all the scripts are held in ${HOME}/PyNCplot. It might be desirable to set an environment variable to make life easier:
57      <DIV CLASS="codetxt">$ export pyHOME=${HOME}/PyNCplot</DIV>
[1352]58      <LI>Finally one need to compile the Fortran modules using the same python to run the scripts. This is done using a standard `Makefile' and the tool <A CLASS="la" HREF="https://docs.scipy.org/doc/numpy-dev/f2py/" TARGET="_blank">f2py</A> to link Fortran compiled codes to python. There are different versions for different LMD/IPSL and French HPC machines. For a standard linux 64-bits machine (debain 7) there is one example as `Makefile.foudre'. Follow the instructions there in after linking the appropriated file:</LI>
59      <DIV CLASS="codetxt">
60      $ ln -s Makefile.[machine].[compiler] ./Makefile
61      </DIV>
62      At the end one should have:
63      <PRE><CODE>
64      module_ForDiag.so
65      module_ForInt.so
66      </CODE></PRE>
[1273]67
68      </OL>
69
70  </BODY>
71</HTML>
72
Note: See TracBrowser for help on using the repository browser.