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wrf-phdf5support.F90 @ 1

Last change on this file since 1 was 1, checked in by lfita, 10 years ago

-- --- Opening of the WRF+LMDZ coupling repository --- -- -

WRF: version v3.3
LMDZ: version v1818

More details in:

File size: 46.1 KB

Line
1	!/***************************************************************************
2	!* The HDF5 WRF IO module was written by the the HDF Group at NCSA, the *
3	!* National Center for Supercomputing Applications. *
4	!* HDF Group *
5	!* National Center for Supercomputing Applications *
6	!* University of Illinois at Urbana-Champaign *
7	!* 605 E. Springfield, Champaign IL 61820 *
8	!* http://hdf.ncsa.uiuc.edu/ *
9	!* *
10	!* Copyright 2004 by the Board of Trustees, University of Illinois, *
11	!* *
12	!* Redistribution or use of this IO module, with or without modification, *
13	!* is permitted for any purpose, including commercial purposes. *
14	!* *
15	!* This software is an unsupported prototype. Use at your own risk. *
16	!* http://hdf.ncsa.uiuc.edu/apps/WRF-ROMS *
17	!* *
18	!* This work was funded by the MEAD expedition at the National Center *
19	!* for Supercomputing Applications, NCSA. For more information see: *
20	!* http://www.ncsa.uiuc.edu/expeditions/MEAD *
21	!* *
22	!* *
23	!****************************************************************************/
24
25	module wrf_phdf5_data
26
27	use HDF5
28	integer , parameter :: FATAL = 1
29	integer , parameter :: WARN = 1
30	integer , parameter :: WrfDataHandleMax = 99
31	integer , parameter :: MaxDims = 2000 ! = NF_MAX_VARS
32	integer , parameter :: MaxTabDims = 100 ! temporary,changable
33	integer , parameter :: MaxVars = 2000
34	integer , parameter :: MaxTimes = 9999 ! temporary, changable
35	integer , parameter :: MaxTimeSLen = 6 ! not exceed 1,000,000 timestamp
36	integer , parameter :: DateStrLen = 19
37	integer , parameter :: VarNameLen = 31
38	integer , parameter :: NO_DIM = 0
39	integer , parameter :: NVarDims = 4
40	integer , parameter :: NMDVarDims = 2
41	integer , parameter :: CompDsetSize = 64256 ! set to 63K
42	character (8) , parameter :: NO_NAME = 'NULL'
43	character(4) , parameter :: hdf5_true ='TRUE'
44	character(5) , parameter :: hdf5_false ='FALSE'
45	integer , parameter :: MemOrdLen = 3
46	character (DateStrLen) , parameter :: ZeroDate = '0000-00-00-00:00:00'
47
48	#include "wrf_io_flags.h"
49	! This is a hack. WRF IOAPI no longer supports WRF_CHARACTER. Rip this out!
50	integer, parameter :: WRF_CHARACTER = 1080
51
52	character (120) :: msg
53
54	! derived data type for dimensional table
55	type :: dim_scale
56	character (len = 256) :: dim_name
57	integer :: length
58	integer :: unlimited
59	end type dim_scale
60
61	type :: wrf_phdf5_data_handle
62	character (256) :: FileName
63	integer :: FileStatus
64	integer :: Comm
65	integer(hid_t) :: FileID
66	integer(hid_t) :: GroupID
67	integer(hid_t) :: DimGroupID
68	integer(hid_t) :: EnumID
69	character (256) :: GroupName
70	character (256) :: DimGroupName
71	logical :: Free
72	logical :: Write
73	character (5) :: TimesName
74	integer :: TimeIndex
75	integer :: MaxTimeCount
76	integer :: CurrentTime !Only used for read
77	integer :: NumberTimes !Only used for read
78	character (DateStrLen), pointer :: Times(:)
79	integer(hid_t) :: TimesID
80	integer(hid_t) :: str_id
81	integer , pointer :: DimLengths(:)
82	integer , pointer :: DimIDs(:)
83	character (31) , pointer :: DimNames(:)
84	integer :: DimUnlimID
85	character (9) :: DimUnlimName
86	type (dim_scale) , pointer :: DIMTABLE(:)
87	integer , dimension(NVarDims) :: DimID
88	integer , dimension(NVarDims) :: Dimension
89	! integer , pointer :: MDDsetIDs(:)
90	integer , pointer :: MDVarDimLens(:)
91	character (256) , pointer :: MDVarNames(:)
92	integer(hid_t) , pointer :: TgroupIDs(:)
93	integer(hid_t) , pointer :: DsetIDs(:)
94	integer(hid_t) , pointer :: MDDsetIDs(:)
95	! integer(hid_t) :: DimTableID
96	integer , pointer :: VarDimLens(:,:)
97	character (VarNameLen), pointer :: VarNames(:)
98	integer :: CurrentVariable !Only used for read
99	integer :: NumVars
100	! first_operation is set to .TRUE. when a new handle is allocated
101	! or when open-for-write or open-for-read are committed. It is set
102	! to .FALSE. when the first field is read or written.
103	logical :: first_operation
104	end type wrf_phdf5_data_handle
105	type(wrf_phdf5_data_handle),target :: WrfDataHandles(WrfDataHandleMax)
106
107	end module wrf_phdf5_data
108
109
110	module ext_phdf5_support_routines
111
112	implicit none
113
114	CONTAINS
115
116	subroutine allocHandle(DataHandle,DH,Comm,Status)
117
118	use wrf_phdf5_data
119	use HDF5
120	include 'wrf_status_codes.h'
121
122	integer ,intent(out) :: DataHandle
123	type(wrf_phdf5_data_handle),pointer:: DH
124	integer ,intent(IN) :: Comm
125	integer ,intent(out) :: Status
126	integer :: i
127	integer :: j
128	integer :: stat
129	integer(hid_t) :: enum_type
130	! character (256) :: NullName
131
132	! NullName = char(0)
133
134	do i=1,WrfDataHandleMax
135	if(WrfDataHandles(i)%Free) then
136	DH => WrfDataHandles(i)
137	DataHandle = i
138	DH%MaxTimeCount = 1
139
140	DH%FileID = -1
141	DH%GroupID = -1
142	DH%DimGroupID = -1
143
144	call SetUp_EnumID(enum_type,Status)
145	if(Status /= 0) then
146	Status = WRF_HDF5_ERR_ALLOCATION
147	write(msg,*) 'Fatal enum ALLOCATION ERROR in ',__FILE__,', line',__LINE__
148	call wrf_debug ( FATAL , msg)
149	return
150	endif
151	DH%EnumID = enum_type
152
153	allocate(DH%Times(MaxTimes), STAT=stat)
154	if(stat/= 0) then
155	Status = WRF_HDF5_ERR_ALLOCATION
156	write(msg,*) 'Fatal ALLOCATION ERROR in ',__FILE__,', line',__LINE__
157	call wrf_debug ( FATAL , msg)
158	return
159	endif
160	! wait in the future
161	! DH%Times(1:MaxTimes) = NullName
162
163	allocate(DH%DimLengths(MaxDims), STAT=stat)
164	if(stat/= 0) then
165	Status = WRF_HDF5_ERR_ALLOCATION
166	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line',__LINE__
167
168	call wrf_debug ( FATAL , msg)
169	return
170	endif
171
172	allocate(DH%DimIDs(MaxDims), STAT=stat)
173	if(stat/= 0) then
174	Status = WRF_HDF5_ERR_ALLOCATION
175	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
176	call wrf_debug ( FATAL , msg)
177	return
178	endif
179
180	allocate(DH%DimNames(MaxDims), STAT=stat)
181	if(stat/= 0) then
182	Status = WRF_HDF5_ERR_ALLOCATION
183	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
184	call wrf_debug ( FATAL , msg)
185	return
186	endif
187
188	allocate(DH%DIMTABLE(MaxTabDims), STAT = stat)
189	if(stat/= 0) then
190	Status = WRF_HDF5_ERR_ALLOCATION
191	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
192	call wrf_debug ( FATAL , msg)
193	return
194	endif
195
196	do j =1,MaxTabDims
197	DH%DIMTABLE(j)%dim_name = NO_NAME
198	DH%DIMTABLE(j)%unlimited = -1
199	enddo
200
201	allocate(DH%MDDsetIDs(MaxVars), STAT=stat)
202	if(stat/= 0) then
203	Status = WRF_HDF5_ERR_ALLOCATION
204	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
205	call wrf_debug ( FATAL , msg)
206	return
207	endif
208
209	allocate(DH%MDVarDimLens(MaxVars), STAT=stat)
210	if(stat/= 0) then
211	Status = WRF_HDF5_ERR_ALLOCATION
212	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
213	call wrf_debug ( FATAL , msg)
214	return
215	endif
216
217	allocate(DH%MDVarNames(MaxVars), STAT=stat)
218	if(stat/= 0) then
219	Status = WRF_HDF5_ERR_ALLOCATION
220	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
221	call wrf_debug ( FATAL , msg)
222	return
223	endif
224
225	allocate(DH%DsetIDs(MaxVars), STAT=stat)
226	if(stat/= 0) then
227	Status = WRF_HDF5_ERR_ALLOCATION
228	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
229	call wrf_debug ( FATAL , msg)
230	return
231	endif
232	DH%DsetIDs = -1
233
234	allocate(DH%TgroupIDs(MaxTimes), STAT=stat)
235	if(stat/= 0) then
236	Status = WRF_HDF5_ERR_ALLOCATION
237	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
238	call wrf_debug ( FATAL , msg)
239	return
240	endif
241	DH%TgroupIDs = -1
242
243	allocate(DH%VarDimLens(NVarDims-1,MaxVars), STAT=stat)
244	if(stat/= 0) then
245	Status = WRF_HDF5_ERR_ALLOCATION
246	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
247	call wrf_debug ( FATAL , msg)
248	return
249	endif
250
251	allocate(DH%VarNames(MaxVars), STAT=stat)
252	if(stat/= 0) then
253	Status = WRF_HDF5_ERR_ALLOCATION
254	write(msg,*) 'Fatal ALLOCATION ERROR in ',"__FILE__",', line', __LINE__
255	call wrf_debug ( FATAL , msg)
256	return
257	endif
258	exit
259	endif
260
261	if(i==WrfDataHandleMax) then
262	Status = WRF_HDF5_ERR_TOO_MANY_FILES
263	write(msg,*) 'Warning TOO MANY FILES in ',"__FILE__",', line', __LINE__
264	call wrf_debug ( WARN , msg)
265	return
266	endif
267	enddo
268
269
270	DH%Free =.false.
271	DH%Comm = Comm
272	DH%Write =.false.
273	DH%first_operation = .TRUE.
274	Status = WRF_NO_ERR
275	end subroutine allocHandle
276
277	! Obtain data handler
278	subroutine GetDH(DataHandle,DH,Status)
279
280	use wrf_phdf5_data
281	include 'wrf_status_codes.h'
282	integer ,intent(in) :: DataHandle
283	type(wrf_phdf5_data_handle) ,pointer :: DH
284	integer ,intent(out) :: Status
285
286	if(DataHandle < 1 .or. DataHandle > WrfDataHandleMax) then
287	Status = WRF_HDF5_ERR_BAD_DATA_HANDLE
288	return
289	endif
290	DH => WrfDataHandles(DataHandle)
291	if(DH%Free) then
292	Status = WRF_HDF5_ERR_BAD_DATA_HANDLE
293	return
294	endif
295	Status = WRF_NO_ERR
296	return
297	end subroutine GetDH
298
299	! Set up eumerate datatype for possible logical type
300	subroutine SetUp_EnumID(enum_type,Status)
301
302	use wrf_phdf5_data
303	use HDF5
304	implicit none
305	include 'wrf_status_codes.h'
306	integer(hid_t) ,intent(out) :: enum_type
307	integer ,intent(out) :: Status
308	integer :: hdf5err
309	integer, dimension(2) :: data
310
311	data(1) = 1
312	data(2) = 0
313
314	call h5tenum_create_f(H5T_NATIVE_INTEGER,enum_type,hdf5err)
315	if(hdf5err.lt.0) then
316	Status = WRF_HDF5_ERR_DATATYPE
317	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
318	call wrf_debug ( WARN , msg)
319	return
320	endif
321
322	call h5tenum_insert_f(enum_type,hdf5_true,data(1),hdf5err)
323	if(hdf5err.lt.0) then
324	Status = WRF_HDF5_ERR_DATATYPE
325	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
326	call wrf_debug ( WARN , msg)
327	return
328	endif
329
330	call h5tenum_insert_f(enum_type,hdf5_false,data(2),Status)
331	if(hdf5err.lt.0) then
332	Status = WRF_HDF5_ERR_DATATYPE
333	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
334	call wrf_debug ( WARN , msg)
335	return
336	endif
337
338	Status = WRF_NO_ERR
339	return
340	end subroutine SetUp_EnumID
341
342	! Returns .TRUE. iff it is OK to write time-independent domain metadata to the
343	! file referenced by DataHandle. If DataHandle is invalid, .FALSE. is
344	! returned.
345	LOGICAL FUNCTION phdf5_ok_to_put_dom_ti( DataHandle )
346	use wrf_phdf5_data
347	include 'wrf_status_codes.h'
348	INTEGER, INTENT(IN) :: DataHandle
349	CHARACTER*80 :: fname
350	INTEGER :: filestate
351	INTEGER :: Status
352	LOGICAL :: dryrun, first_output, retval
353	call ext_phdf5_inquire_filename( DataHandle, fname, filestate, Status )
354	IF ( Status /= WRF_NO_ERR ) THEN
355	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__, &
356	', line', __LINE__
357	call wrf_debug ( WARN , TRIM(msg) )
358	retval = .FALSE.
359	ELSE
360	dryrun = ( filestate .EQ. WRF_FILE_OPENED_NOT_COMMITTED )
361	first_output = phdf5_is_first_operation( DataHandle )
362	retval = .NOT. dryrun .AND. first_output
363	ENDIF
364	phdf5_ok_to_put_dom_ti = retval
365	RETURN
366	END FUNCTION phdf5_ok_to_put_dom_ti
367
368	! Returns .TRUE. iff it is OK to read time-independent domain metadata from the
369	! file referenced by DataHandle. If DataHandle is invalid, .FALSE. is
370	! returned.
371	LOGICAL FUNCTION phdf5_ok_to_get_dom_ti( DataHandle )
372	use wrf_phdf5_data
373	include 'wrf_status_codes.h'
374	INTEGER, INTENT(IN) :: DataHandle
375	CHARACTER*80 :: fname
376	INTEGER :: filestate
377	INTEGER :: Status
378	LOGICAL :: dryrun, retval
379	call ext_phdf5_inquire_filename( DataHandle, fname, filestate, Status )
380	IF ( Status /= WRF_NO_ERR ) THEN
381	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__, &
382	', line', __LINE__
383	call wrf_debug ( WARN , TRIM(msg) )
384	retval = .FALSE.
385	ELSE
386	dryrun = ( filestate .EQ. WRF_FILE_OPENED_NOT_COMMITTED )
387	retval = .NOT. dryrun
388	ENDIF
389	phdf5_ok_to_get_dom_ti = retval
390	RETURN
391	END FUNCTION phdf5_ok_to_get_dom_ti
392
393	! Returns .TRUE. iff nothing has been read from or written to the file
394	! referenced by DataHandle. If DataHandle is invalid, .FALSE. is returned.
395	LOGICAL FUNCTION phdf5_is_first_operation( DataHandle )
396	use wrf_phdf5_data
397	INCLUDE 'wrf_status_codes.h'
398	INTEGER, INTENT(IN) :: DataHandle
399	TYPE(wrf_phdf5_data_handle) ,POINTER :: DH
400	INTEGER :: Status
401	LOGICAL :: retval
402	CALL GetDH( DataHandle, DH, Status )
403	IF ( Status /= WRF_NO_ERR ) THEN
404	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__, &
405	', line', __LINE__
406	call wrf_debug ( WARN , TRIM(msg) )
407	retval = .FALSE.
408	ELSE
409	retval = DH%first_operation
410	ENDIF
411	phdf5_is_first_operation = retval
412	RETURN
413	END FUNCTION phdf5_is_first_operation
414
415	end module ext_phdf5_support_routines
416
417	!module wrf_phdf5_opt_data
418	! integer ,parameter :: MaxOptVars = 100
419	!end module wrf_phdf5_opt_data
420
421	!module opt_data_module
422
423	!use wrf_phdf5_opt_data
424	! type :: field
425
426	! logical :: Free
427	! integer,pointer :: darrays(:)
428	! integer :: index
429	! end type field
430	! type(field),target :: fieldhandle(MaxOptVars)
431	!end module opt_data_module
432
433	!module opt_support_module
434	! implicit none
435	!contains
436	! subroutine alloc_opt_handle(ODH)
437	! use opt_data_module
438	! type(field),pointer::DH
439	! integer :: i
440
441	! do i =1,MaxOptVars
442	! DH=>fieldhandle(i)
443	! DH%index = 0
444	! enddo
445	!end module opt_support_module
446
447	! check the date, only use the length
448	subroutine DateCheck(Date,Status)
449	use wrf_phdf5_data
450	include 'wrf_status_codes.h'
451	character() ,intent(in) :: Date
452	integer ,intent(out) :: Status
453
454	if(len(Date) /= DateStrLen) then
455	Status = WRF_HDF5_ERR_DATESTR_BAD_LENGTH
456	else
457	Status = WRF_NO_ERR
458	endif
459	return
460	end subroutine DateCheck
461
462	! This routine is for meta-data time dependent varible attribute
463	subroutine GetName(Element,Var,Name,Status)
464
465	use wrf_phdf5_data
466	include 'wrf_status_codes.h'
467	character() ,intent(in) :: Element
468	character() ,intent(in) :: Var
469	character() ,intent(out) :: Name
470	integer ,intent(out) :: Status
471	character (VarNameLen) :: VarName
472	character (1) :: c
473	integer :: i
474	integer, parameter :: upper_to_lower =IACHAR('a')-IACHAR('A')
475
476	VarName = Var
477	Name = 'MD___'//trim(Element)//VarName
478	do i=1,len(Name)
479	c=Name(i:i)
480	if('A'<=c .and. c <='Z') Name(i:i)=achar(iachar(c)+upper_to_lower)
481	if(c=='-'.or.c==':') Name(i:i)='_'
482	enddo
483	Status = WRF_NO_ERR
484	return
485	end subroutine GetName
486
487	! Obtain TimeIndex
488	subroutine GetDataTimeIndex(IO,DataHandle,DateStr,TimeIndex,Status)
489
490	use HDF5
491	use wrf_phdf5_data
492	use ext_phdf5_support_routines
493
494	implicit none
495	include 'wrf_status_codes.h'
496
497	character (*) ,intent(in) :: IO
498	integer ,intent(in) :: DataHandle
499	character() ,intent(in) :: DateStr
500	character (DateStrLen), pointer :: TempTimes(:)
501	integer ,intent(out) :: TimeIndex
502	integer ,intent(out) :: Status
503
504	type(wrf_phdf5_data_handle) ,pointer :: DH
505	integer :: VStart(2)
506	integer :: VCount(2)
507	integer :: stat
508	integer :: i
509	integer :: PreTimeCount
510
511	integer :: rank
512	integer(hsize_t), dimension(1) :: chunk_dims =(/1/)
513	integer(hsize_t), dimension(1) :: dims
514	integer(hsize_t), dimension(1) :: hdf5_maxdims
515	integer(hsize_t), dimension(1) :: offset
516	integer(hsize_t), dimension(1) :: count
517	integer(hsize_t), dimension(1) :: sizes
518
519	INTEGER(HID_T) :: dset_id ! Dataset ID
520	INTEGER(HID_T) :: dspace_id ! Dataspace ID
521	INTEGER(HID_T) :: fspace_id ! Dataspace ID
522	INTEGER(HID_T) :: crp_list ! chunk ID
523	integer(hid_t) :: str_id ! string ID
524	integer :: hdf5err
525
526	integer(hid_t) :: group_id
527	character(Len = 512) :: groupname
528
529	! for debug
530
531	character(len=100) :: buf
532	integer(size_t) :: name_size
533	integer(size_t) :: datelen_size
534	! suppose the output will not exceed 100,0000 timesteps.
535	character(Len = MaxTimeSLen) :: tname
536
537
538	! DH => WrfDataHandles(DataHandle), don't know why NetCDF doesn't use GetDH
539	call GetDH(DataHandle,DH,Status)
540	if(Status /= WRF_NO_ERR) then
541	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
542	call wrf_debug ( WARN , msg)
543	return
544	endif
545
546	call DateCheck(DateStr,Status)
547	if(Status /= WRF_NO_ERR) then
548	Status = WRF_HDF5_ERR_DATESTR_ERROR
549	write(msg,*) 'Warning DATE STRING ERROR in ',"__FILE__",', line', __LINE__
550	call wrf_debug ( WARN , msg)
551	return
552	endif
553
554	if(IO == 'write') then
555	TimeIndex = DH%TimeIndex
556	if(TimeIndex <= 0) then
557	TimeIndex = 1
558	elseif(DateStr < DH%Times(TimeIndex)) then
559	Status = WRF_HDF5_ERR_DATE_LT_LAST_DATE
560	write(msg,*) 'Warning DATE < LAST DATE in ',"__FILE__",', line', __LINE__
561	call wrf_debug ( WARN , msg)
562	return
563	elseif(DateStr == DH%Times(TimeIndex)) then
564	Status = WRF_NO_ERR
565	return
566	else
567	TimeIndex = TimeIndex + 1
568	! If exceeding the maximum timestep, updating the maximum timestep
569	if(TimeIndex > MaxTimes*(DH%MaxTimeCount)) then
570	PreTimeCount = DH%MaxTimeCount
571	allocate(TempTimes(PreTimeCount*MaxTimes))
572	TempTimes(1:MaxTimes*PreTimeCount)=DH%Times(1:MaxTimes &
573	*PreTimeCount)
574	DH%MaxTimeCount = DH%MaxTimeCount +1
575	deallocate(DH%Times)
576	allocate(DH%Times(DH%MaxTimeCount*MaxTimes))
577	DH%Times(1:MaxTimes*PreTimeCount)=TempTimes(1:MaxTimes &
578	*PreTimeCount)
579	deallocate(TempTimes)
580	endif
581	endif
582	DH%TimeIndex = TimeIndex
583	DH%Times(TimeIndex) = DateStr
584	! From NetCDF implementation, keep it in case it can be used.
585	! VStart(1) = 1
586	! VStart(2) = TimeIndex
587	! VCount(1) = DateStrLen
588	! VCount(2) = 1
589
590	! create memory dataspace id and file dataspace id
591	dims(1) = 1
592	count(1) = 1
593	offset(1) = TimeIndex -1
594	sizes(1) = TimeIndex
595
596	! create group id for different time stamp
597	call numtochar(TimeIndex,tname)
598	groupname = 'TIME_STAMP_'//tname
599	! call h5gn_members_f(DH%GroupID,DH%GroupName,nmembers,hdf5err)
600	! do i = 0, nmembers - 1
601	! call h5gget_obj_info_idx_f(DH%GroupID,DH%GroupName,i,ObjName, ObjType, &
602	! hdf5err)
603
604	! if(ObjName(1:17) == groupname) then
605	! call h5gopen_f(DH%GroupID,groupname,tgroupid,hdf5err)
606	! exit
607	! endif
608	! enddo
609
610	if(DH%Tgroupids(TimeIndex) == -1) then
611	call h5gcreate_f(DH%groupid,groupname,group_id,hdf5err)
612	if(hdf5err .lt. 0) then
613	Status = WRF_HDF5_ERR_GROUP
614	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
615	call wrf_debug ( WARN , msg)
616	return
617	endif
618	DH%Tgroupids(TimeIndex) = group_id
619	else
620	! call h5gopen_f(DH%groupid,groupname,group_id,
621	group_id = DH%Tgroupids(TimeIndex)
622	endif
623
624	call h5screate_simple_f(1,dims,dspace_id,hdf5err,dims)
625	if(hdf5err.lt.0) then
626	Status = WRF_HDF5_ERR_DATASPACE
627	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
628	call wrf_debug ( WARN , msg)
629	return
630	endif
631
632
633	! create HDF5 string handler for time
634	if(TimeIndex == 1) then
635	call h5tcopy_f(H5T_NATIVE_CHARACTER, str_id, hdf5err)
636	if(hdf5err.lt.0) then
637	Status = WRF_HDF5_ERR_DATATYPE
638	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
639	call wrf_debug ( WARN , msg)
640	return
641	endif
642
643	datelen_size = DateStrLen
644	call h5tset_size_f(str_id,datelen_size,hdf5err)
645	if(hdf5err.lt.0) then
646	Status = WRF_HDF5_ERR_DATATYPE
647	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
648	call wrf_debug ( WARN , msg)
649	return
650	endif
651	else
652	str_id = DH%str_id
653	endif
654
655	call h5dcreate_f(group_id,DH%TimesName,str_id,dspace_id,&
656	DH%TimesID, hdf5err)
657	if(hdf5err.lt.0) then
658	Status = WRF_HDF5_ERR_DATASET_CREATE
659	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
660	call wrf_debug ( WARN , msg)
661	return
662	endif
663
664
665	! write the data in memory space to file space
666	CALL h5dwrite_f(DH%TimesID,str_id,DateStr,dims,hdf5err,dspace_id,dspace_id)
667	if(hdf5err.lt.0) then
668	Status = WRF_HDF5_ERR_DATASET_WRITE
669	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
670	call wrf_debug ( WARN , msg)
671	return
672	endif
673
674	if(TimeIndex == 1) then
675	DH%str_id = str_id
676	endif
677
678
679	call h5sclose_f(dspace_id,hdf5err)
680	if(hdf5err.lt.0) then
681	Status = WRF_HDF5_ERR_DATASPACE
682	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
683	call wrf_debug ( WARN , msg)
684	return
685	endif
686
687	call h5dclose_f(DH%TimesID,hdf5err)
688	if(hdf5err.lt.0) then
689	Status = WRF_HDF5_ERR_DATASET_GENERAL
690	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
691	call wrf_debug ( WARN , msg)
692	return
693	endif
694
695	else
696	! This is for IO read
697	! Find the timeIndex(very expensive for large
698	! time stamp, should use hashing table)
699
700	do i=1,MaxTimes*DH%MaxTimeCount
701
702	! For handling reading maximum timestamp greater than 9000 in the future
703	! if(DH%Times(i) == NullName) then
704	! Status = WRF_HDF5_ERR_TIME
705	! write(msg,*) 'Warning TIME ',DateStr,' NOT FOUND in ',"__FILE__",&
706	! ', line', __LINE__
707	! call wrf_debug ( WARN , msg)
708	! return
709	! endif
710
711	if(DH%Times(i) == DateStr) then
712	Status = WRF_NO_ERR
713	TimeIndex = i
714	exit
715	endif
716
717	! Need a recursive function to handle this
718	! This is a potential bug
719	if(i == MaxTimes*DH%MaxTimeCount) then
720	! PreTimeCount = DH%MaxTimeCount
721	! allocate(TempTimes(PreTimeCount*MaxTimes))
722	! TempTimes(1:MaxTimes*PreTimeCount)=DH%Times(1:MaxTimes &
723	! *PreTimeCount)
724	! DH%MaxTimeCount = DH%MaxTimeCount +1
725	! deallocate(DH%Times)
726	! allocate(DH%Times(DH%MaxTimeCount*MaxTimes))
727	! DH%Times(1:MaxTimes*PreTimeCount)=TempTimes(1:MaxTimes &
728	! *PreTimeCount)
729	! deallocate(TempTimes)
730	Status = WRF_HDF5_ERR_TIME
731	write(msg,*) 'Warning TIME ',DateStr,' NOT FOUND in ',"__FILE__",&
732	', line', __LINE__
733	call wrf_debug ( WARN , msg)
734	return
735	endif
736	enddo
737
738	! do the hyperslab selection
739
740	endif
741	return
742	end subroutine GetDataTimeIndex
743
744	subroutine GetAttrTimeIndex(IO,DataHandle,DateStr,TimeIndex,Status)
745
746	use HDF5
747	use wrf_phdf5_data
748	use ext_phdf5_support_routines
749
750	implicit none
751	include 'wrf_status_codes.h'
752
753	character (*) ,intent(in) :: IO
754	integer ,intent(in) :: DataHandle
755	character() ,intent(in) :: DateStr
756	character (DateStrLen), pointer :: TempTimes(:)
757	integer ,intent(out) :: TimeIndex
758	integer ,intent(out) :: Status
759
760	type(wrf_phdf5_data_handle) ,pointer :: DH
761	integer :: VStart(2)
762	integer :: VCount(2)
763	integer :: stat
764	integer :: i
765	integer :: PreTimeCount
766
767	integer :: rank
768	integer(hsize_t), dimension(1) :: chunk_dims =(/1/)
769	integer(hsize_t), dimension(1) :: dims
770	integer(hsize_t), dimension(1) :: hdf5_maxdims
771	integer(hsize_t), dimension(1) :: offset
772	integer(hsize_t), dimension(1) :: count
773	integer(hsize_t), dimension(1) :: sizes
774
775	INTEGER(HID_T) :: dset_id ! Dataset ID
776	INTEGER(HID_T) :: dspace_id ! Dataspace ID
777	INTEGER(HID_T) :: fspace_id ! Dataspace ID
778	INTEGER(HID_T) :: crp_list ! chunk ID
779	integer(hid_t) :: str_id ! string ID
780	integer :: hdf5err
781
782	integer(size_t) :: datelen_size
783	integer(hid_t) :: group_id
784	character(Len = 512) :: groupname
785
786	! suppose the output will not exceed 100,0000 timesteps.
787	character(Len = MaxTimeSLen) :: tname
788
789	! DH => WrfDataHandles(DataHandle), don't know why NetCDF doesn't use GetDH
790	call GetDH(DataHandle,DH,Status)
791	if(Status /= WRF_NO_ERR) then
792	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
793	call wrf_debug ( WARN , msg)
794	return
795	endif
796
797	call DateCheck(DateStr,Status)
798	if(Status /= WRF_NO_ERR) then
799	Status = WRF_HDF5_ERR_DATESTR_ERROR
800	write(msg,*) 'Warning DATE STRING ERROR in ',"__FILE__",', line', __LINE__
801	call wrf_debug ( WARN , msg)
802	return
803	endif
804
805	if(IO == 'write') then
806	TimeIndex = DH%TimeIndex
807	if(TimeIndex <= 0) then
808	TimeIndex = 1
809	elseif(DateStr < DH%Times(TimeIndex)) then
810	Status = WRF_HDF5_ERR_DATE_LT_LAST_DATE
811	write(msg,*) 'Warning DATE < LAST DATE in ',"__FILE__",', line', __LINE__
812	call wrf_debug ( WARN , msg)
813	return
814	elseif(DateStr == DH%Times(TimeIndex)) then
815	Status = WRF_NO_ERR
816	return
817	else
818	TimeIndex = TimeIndex + 1
819	! If exceeding the maximum timestep, updating the maximum timestep
820	if(TimeIndex > MaxTimes*(DH%MaxTimeCount)) then
821	PreTimeCount = DH%MaxTimeCount
822	allocate(TempTimes(PreTimeCount*MaxTimes))
823	TempTimes(1:MaxTimes*PreTimeCount)=DH%Times(1:MaxTimes &
824	*PreTimeCount)
825	DH%MaxTimeCount = DH%MaxTimeCount +1
826	deallocate(DH%Times)
827	allocate(DH%Times(DH%MaxTimeCount*MaxTimes))
828	DH%Times(1:MaxTimes*PreTimeCount)=TempTimes(1:MaxTimes &
829	*PreTimeCount)
830	deallocate(TempTimes)
831	endif
832	endif
833	DH%TimeIndex = TimeIndex
834	DH%Times(TimeIndex) = DateStr
835
836	! From NetCDF implementation, keep it in case it can be used.
837	! VStart(1) = 1
838	! VStart(2) = TimeIndex
839	! VCount(1) = DateStrLen
840	! VCount(2) = 1
841
842	! create memory dataspace id and file dataspace id
843	dims(1) = 1
844	count(1) = 1
845	offset(1) = TimeIndex -1
846	sizes(1) = TimeIndex
847
848	! create group id for different time stamp
849	call numtochar(TimeIndex,tname)
850	groupname = 'TIME_STAMP_'//tname
851
852	if(DH%Tgroupids(TimeIndex) == -1) then
853	call h5gcreate_f(DH%groupid,groupname,group_id,hdf5err)
854	if(hdf5err .lt. 0) then
855	Status = WRF_HDF5_ERR_GROUP
856	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
857	call wrf_debug ( WARN , msg)
858	return
859	endif
860	DH%Tgroupids(TimeIndex) = group_id
861	else
862	! call h5gopen_f(DH%groupid,groupname,group_id,
863	group_id = DH%Tgroupids(TimeIndex)
864	endif
865
866	call h5screate_simple_f(1,dims,dspace_id,hdf5err,dims)
867	if(hdf5err.lt.0) then
868	Status = WRF_HDF5_ERR_DATASPACE
869	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
870	call wrf_debug ( WARN , msg)
871	return
872	endif
873
874
875	! create HDF5 string handler for time
876	if(TimeIndex == 1) then
877	call h5tcopy_f(H5T_NATIVE_CHARACTER, str_id, hdf5err)
878	if(hdf5err.lt.0) then
879	Status = WRF_HDF5_ERR_DATATYPE
880	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
881	call wrf_debug ( WARN , msg)
882	return
883	endif
884
885	datelen_size = DateStrLen
886	call h5tset_size_f(str_id,datelen_size,hdf5err)
887	if(hdf5err.lt.0) then
888	Status = WRF_HDF5_ERR_DATATYPE
889	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
890	call wrf_debug ( WARN , msg)
891	return
892	endif
893	else
894	str_id = DH%str_id
895	endif
896
897	call h5dcreate_f(group_id,DH%TimesName,str_id,dspace_id,&
898	DH%TimesID, hdf5err)
899	if(hdf5err.lt.0) then
900	Status = WRF_HDF5_ERR_DATASET_CREATE
901	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
902	call wrf_debug ( WARN , msg)
903	return
904	endif
905
906
907	! write the data in memory space to file space
908	CALL h5dwrite_f(DH%TimesID,str_id,DateStr,dims,hdf5err,dspace_id,dspace_id)
909	if(hdf5err.lt.0) then
910	Status = WRF_HDF5_ERR_DATASET_WRITE
911	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
912	call wrf_debug ( WARN , msg)
913	return
914	endif
915
916	if(TimeIndex == 1) then
917	DH%str_id = str_id
918	endif
919
920
921	call h5sclose_f(dspace_id,hdf5err)
922	if(hdf5err.lt.0) then
923	Status = WRF_HDF5_ERR_DATASPACE
924	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
925	call wrf_debug ( WARN , msg)
926	return
927	endif
928
929	call h5dclose_f(DH%TimesID,hdf5err)
930	if(hdf5err.lt.0) then
931	Status = WRF_HDF5_ERR_DATASET_GENERAL
932	write(msg,*) 'Warning Status = ',Status,' in ',__FILE__,', line', __LINE__
933	call wrf_debug ( WARN , msg)
934	return
935	endif
936
937	else
938	! This is for IO read
939	! Find the timeIndex(very expensive for large
940	! time stamp, should use hashing table)
941
942	do i=1,MaxTimes*DH%MaxTimeCount
943
944
945	if(DH%Times(i) == DateStr) then
946	Status = WRF_NO_ERR
947	TimeIndex = i
948	exit
949	endif
950
951	! Need a recursive function to handle this
952	! This is a potential bug
953	if(i == MaxTimes*DH%MaxTimeCount) then
954	Status = WRF_HDF5_ERR_TIME
955	write(msg,*) 'Warning TIME ',DateStr,' NOT FOUND in ',"__FILE__",&
956	', line', __LINE__
957	call wrf_debug ( WARN , msg)
958	return
959	endif
960	enddo
961
962	! do the hyperslab selection
963
964	endif
965	return
966	end subroutine GetAttrTimeIndex
967
968
969	! Obtain the rank of the dimension
970	subroutine GetDim(MemoryOrder,NDim,Status)
971
972	include 'wrf_status_codes.h'
973	character() ,intent(in) :: MemoryOrder
974	integer ,intent(out) :: NDim
975	integer ,intent(out) :: Status
976	character*3 :: MemOrd
977
978	call LowerCase(MemoryOrder,MemOrd)
979	select case (MemOrd)
980	case ('xyz','xzy','yxz','yzx','zxy','zyx','xsz','xez','ysz','yez')
981	NDim = 3
982	case ('xy','yx','xs','xe','ys','ye')
983	NDim = 2
984	case ('z','c','0')
985	NDim = 1
986	case default
987	Status = WRF_HDF5_ERR_BAD_MEMORYORDER
988	return
989	end select
990	Status = WRF_NO_ERR
991	return
992	end subroutine GetDim
993
994	! Obtain the index for transposing
995	subroutine GetIndices(NDim,Start,End,i1,i2,j1,j2,k1,k2)
996	integer ,intent(in) :: NDim
997	integer ,dimension(*),intent(in) :: Start,End
998	integer ,intent(out) :: i1,i2,j1,j2,k1,k2
999
1000	i1=1
1001	i2=1
1002	j1=1
1003	j2=1
1004	k1=1
1005	k2=1
1006	i1 = Start(1)
1007	i2 = End (1)
1008	if(NDim == 1) return
1009	j1 = Start(2)
1010	j2 = End (2)
1011	if(NDim == 2) return
1012	k1 = Start(3)
1013	k2 = End (3)
1014	return
1015	end subroutine GetIndices
1016
1017	! shuffling the memory order to XYZ order
1018	subroutine ExtOrder(MemoryOrder,Vector,Status)
1019	use wrf_phdf5_data
1020	include 'wrf_status_codes.h'
1021	character() ,intent(in) :: MemoryOrder
1022	integer,dimension(*) ,intent(inout) :: Vector
1023	integer ,intent(out) :: Status
1024	integer :: NDim
1025	integer,dimension(NVarDims) :: temp
1026	character*3 :: MemOrd
1027
1028	call GetDim(MemoryOrder,NDim,Status)
1029	temp(1:NDim) = Vector(1:NDim)
1030	call LowerCase(MemoryOrder,MemOrd)
1031	select case (MemOrd)
1032
1033	case ('xyz','xsz','xez','ysz','yez','xy','xs','xe','ys','ye','z','c')
1034	continue
1035	case ('0')
1036	Vector(1) = 1
1037	case ('xzy')
1038	Vector(2) = temp(3)
1039	Vector(3) = temp(2)
1040	case ('yxz')
1041	Vector(1) = temp(2)
1042	Vector(2) = temp(1)
1043	case ('yzx')
1044	Vector(1) = temp(3)
1045	Vector(2) = temp(1)
1046	Vector(3) = temp(2)
1047	case ('zxy')
1048	Vector(1) = temp(2)
1049	Vector(2) = temp(3)
1050	Vector(3) = temp(1)
1051	case ('zyx')
1052	Vector(1) = temp(3)
1053	Vector(3) = temp(1)
1054	case ('yx')
1055	Vector(1) = temp(2)
1056	Vector(2) = temp(1)
1057	case default
1058	Status = WRF_HDF5_ERR_BAD_MEMORYORDER
1059	return
1060	end select
1061	Status = WRF_NO_ERR
1062	return
1063	end subroutine ExtOrder
1064
1065	! shuffling the dimensional name order
1066	subroutine ExtOrderStr(MemoryOrder,Vector,ROVector,Status)
1067	use wrf_phdf5_data
1068	include 'wrf_status_codes.h'
1069	character() ,intent(in) :: MemoryOrder
1070	character(),dimension(*) ,intent(in) :: Vector
1071	character(256),dimension(NVarDims),intent(out) :: ROVector
1072	integer ,intent(out) :: Status
1073	integer :: NDim
1074	character*3 :: MemOrd
1075
1076	call GetDim(MemoryOrder,NDim,Status)
1077	ROVector(1:NDim) = Vector(1:NDim)
1078	call LowerCase(MemoryOrder,MemOrd)
1079	select case (MemOrd)
1080
1081	case ('xyz','xsz','xez','ysz','yez','xy','xs','xe','ys','ye','z','c')
1082	continue
1083	case ('0')
1084	ROVector(1) = 'ext_scalar'
1085	case ('xzy')
1086	ROVector(2) = Vector(3)
1087	ROVector(3) = Vector(2)
1088	case ('yxz')
1089	ROVector(1) = Vector(2)
1090	ROVector(2) = Vector(1)
1091	case ('yzx')
1092	ROVector(1) = Vector(3)
1093	ROVector(2) = Vector(1)
1094	ROVector(3) = Vector(2)
1095	case ('zxy')
1096	ROVector(1) = Vector(2)
1097	ROVector(2) = Vector(3)
1098	ROVector(3) = Vector(1)
1099	case ('zyx')
1100	ROVector(1) = Vector(3)
1101	ROVector(3) = Vector(1)
1102	case ('yx')
1103	ROVector(1) = Vector(2)
1104	ROVector(2) = Vector(1)
1105	case default
1106	Status = WRF_HDF5_ERR_BAD_MEMORYORDER
1107	return
1108	end select
1109	Status = WRF_NO_ERR
1110	return
1111	end subroutine ExtOrderStr
1112
1113
1114	subroutine LowerCase(MemoryOrder,MemOrd)
1115	character() ,intent(in) :: MemoryOrder
1116	character() ,intent(out) :: MemOrd
1117	character*3 :: c
1118	integer ,parameter :: upper_to_lower =IACHAR('a')-IACHAR('A')
1119	integer :: i,N
1120
1121	MemOrd = ' '
1122	N = len(MemoryOrder)
1123	MemOrd(1:N) = MemoryOrder(1:N)
1124	do i=1,N
1125	c = MemoryOrder(i:i)
1126	if('A'<=c .and. c <='Z') MemOrd(i:i)=achar(iachar(c)+upper_to_lower)
1127	enddo
1128	return
1129	end subroutine LowerCase
1130
1131	subroutine UpperCase(MemoryOrder,MemOrd)
1132	character() ,intent(in) :: MemoryOrder
1133	character() ,intent(out) :: MemOrd
1134	character*3 :: c
1135	integer ,parameter :: lower_to_upper =IACHAR('A')-IACHAR('a')
1136	integer :: i,N
1137
1138	MemOrd = ' '
1139	N = len(MemoryOrder)
1140	MemOrd(1:N) = MemoryOrder(1:N)
1141	do i=1,N
1142	c = MemoryOrder(i:i)
1143	if('a'<=c .and. c <='z') MemOrd(i:i)=achar(iachar(c)+lower_to_upper)
1144	enddo
1145	return
1146	end subroutine UpperCase
1147
1148	! subroutine used in transpose routine
1149	subroutine reorder (MemoryOrder,MemO)
1150	character() ,intent(in) :: MemoryOrder
1151	character*3 ,intent(out) :: MemO
1152	character*3 :: MemOrd
1153	integer :: N,i,i1,i2,i3
1154
1155	MemO = MemoryOrder
1156	N = len_trim(MemoryOrder)
1157	if(N == 1) return
1158	call lowercase(MemoryOrder,MemOrd)
1159	i1 = 1
1160	i3 = 1
1161	do i=2,N
1162	if(ichar(MemOrd(i:i)) < ichar(MemOrd(i1:i1))) I1 = i
1163	if(ichar(MemOrd(i:i)) > ichar(MemOrd(i3:i3))) I3 = i
1164	enddo
1165	if(N == 2) then
1166	i2=i3
1167	else
1168	i2 = 6-i1-i3
1169	endif
1170	MemO(1:1) = MemoryOrder(i1:i1)
1171	MemO(2:2) = MemoryOrder(i2:i2)
1172	if(N == 3) MemO(3:3) = MemoryOrder(i3:i3)
1173	if(MemOrd(i1:i1) == 's' .or. MemOrd(i1:i1) == 'e') then
1174	MemO(1:N-1) = MemO(2:N)
1175	MemO(N:N ) = MemoryOrder(i1:i1)
1176	endif
1177	return
1178	end subroutine reorder
1179
1180	subroutine Transpose_hdf5(IO,MemoryOrder,di, Field,l1,l2,m1,m2,n1,n2 &
1181	,XField,x1,x2,y1,y2,z1,z2 &
1182	,i1,i2,j1,j2,k1,k2 )
1183	character() ,intent(in) :: IO
1184	character() ,intent(in) :: MemoryOrder
1185	integer ,intent(in) :: l1,l2,m1,m2,n1,n2
1186	integer ,intent(in) :: di
1187	integer ,intent(in) :: x1,x2,y1,y2,z1,z2
1188	integer ,intent(in) :: i1,i2,j1,j2,k1,k2
1189	integer ,intent(inout) :: Field(di,l1:l2,m1:m2,n1:n2)
1190	!jm 010827 integer ,intent(inout) :: XField(di,x1:x2,y1:y2,z1:z2)
1191	integer ,intent(inout) :: XField(di,(i2-i1+1)(j2-j1+1)(k2-k1+1))
1192	character*3 :: MemOrd
1193	character*3 :: MemO
1194	integer ,parameter :: MaxUpperCase=IACHAR('Z')
1195	integer :: i,j,k,ix,jx,kx
1196
1197	call LowerCase(MemoryOrder,MemOrd)
1198	select case (MemOrd)
1199
1200	!#define XDEX(A,B,C) A-A ## 1+1+(A ## 2-A ## 1+1)((B-B ## 1)+(C-C ## 1)(B ## 2-B ## 1+1))
1201
1202
1203	case ('xzy')
1204
1205	ix=0
1206	jx=0
1207	kx=0
1208	call reorder(MemoryOrder,MemO)
1209	if(IACHAR(MemO(1:1)) > MaxUpperCase) ix=i2+i1
1210	if(IACHAR(MemO(2:2)) > MaxUpperCase) jx=j2+j1
1211	if(IACHAR(MemO(3:3)) > MaxUpperCase) kx=k2+k1
1212	do k=k1,k2
1213	do j=j1,j2
1214	do i=i1,i2
1215	if(IO == 'write') then
1216	XField(1:di,(i-i1+1+(i2-i1+1)((k-k1)+(j-j1)(k2-k1+1)))) = Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k))
1217	else
1218	Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k)) = XField(1:di,(i-i1+1+(i2-i1+1)((k-k1)+(j-j1)(k2-k1+1))))
1219	endif
1220	enddo
1221	enddo
1222	enddo
1223	return
1224
1225	case ('xyz','xsz','xez','ysz','yez','xy','xs','xe','ys','ye','z','c','0')
1226
1227
1228	ix=0
1229	jx=0
1230	kx=0
1231	call reorder(MemoryOrder,MemO)
1232	if(IACHAR(MemO(1:1)) > MaxUpperCase) ix=i2+i1
1233	if(IACHAR(MemO(2:2)) > MaxUpperCase) jx=j2+j1
1234	if(IACHAR(MemO(3:3)) > MaxUpperCase) kx=k2+k1
1235	do k=k1,k2
1236	do j=j1,j2
1237	do i=i1,i2
1238	if(IO == 'write') then
1239	XField(1:di,(i-i1+1+(i2-i1+1)((j-j1)+(k-k1)(j2-j1+1)))) = Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k))
1240	else
1241	Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k)) = XField(1:di,(i-i1+1+(i2-i1+1)((j-j1)+(k-k1)(j2-j1+1))))
1242	endif
1243	enddo
1244	enddo
1245	enddo
1246	return
1247
1248	case ('yxz')
1249
1250
1251	ix=0
1252	jx=0
1253	kx=0
1254	call reorder(MemoryOrder,MemO)
1255	if(IACHAR(MemO(1:1)) > MaxUpperCase) ix=i2+i1
1256	if(IACHAR(MemO(2:2)) > MaxUpperCase) jx=j2+j1
1257	if(IACHAR(MemO(3:3)) > MaxUpperCase) kx=k2+k1
1258	do k=k1,k2
1259	do j=j1,j2
1260	do i=i1,i2
1261	if(IO == 'write') then
1262	XField(1:di,(j-j1+1+(j2-j1+1)((i-i1)+(k-k1)(i2-i1+1)))) = Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k))
1263	else
1264	Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k)) = XField(1:di,(j-j1+1+(j2-j1+1)((i-i1)+(k-k1)(i2-i1+1))))
1265	endif
1266	enddo
1267	enddo
1268	enddo
1269	return
1270
1271	case ('zxy')
1272
1273
1274	ix=0
1275	jx=0
1276	kx=0
1277	call reorder(MemoryOrder,MemO)
1278	if(IACHAR(MemO(1:1)) > MaxUpperCase) ix=i2+i1
1279	if(IACHAR(MemO(2:2)) > MaxUpperCase) jx=j2+j1
1280	if(IACHAR(MemO(3:3)) > MaxUpperCase) kx=k2+k1
1281	do k=k1,k2
1282	do j=j1,j2
1283	do i=i1,i2
1284	if(IO == 'write') then
1285	XField(1:di,(k-k1+1+(k2-k1+1)((i-i1)+(j-j1)(i2-i1+1)))) = Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k))
1286	else
1287	Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k)) = XField(1:di,(k-k1+1+(k2-k1+1)((i-i1)+(j-j1)(i2-i1+1))))
1288	endif
1289	enddo
1290	enddo
1291	enddo
1292	return
1293
1294	case ('yzx')
1295
1296
1297	ix=0
1298	jx=0
1299	kx=0
1300	call reorder(MemoryOrder,MemO)
1301	if(IACHAR(MemO(1:1)) > MaxUpperCase) ix=i2+i1
1302	if(IACHAR(MemO(2:2)) > MaxUpperCase) jx=j2+j1
1303	if(IACHAR(MemO(3:3)) > MaxUpperCase) kx=k2+k1
1304	do k=k1,k2
1305	do j=j1,j2
1306	do i=i1,i2
1307	if(IO == 'write') then
1308	XField(1:di,(j-j1+1+(j2-j1+1)((k-k1)+(i-i1)(k2-k1+1)))) = Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k))
1309	else
1310	Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k)) = XField(1:di,(j-j1+1+(j2-j1+1)((k-k1)+(i-i1)(k2-k1+1))))
1311	endif
1312	enddo
1313	enddo
1314	enddo
1315	return
1316
1317	case ('zyx')
1318
1319
1320	ix=0
1321	jx=0
1322	kx=0
1323	call reorder(MemoryOrder,MemO)
1324	if(IACHAR(MemO(1:1)) > MaxUpperCase) ix=i2+i1
1325	if(IACHAR(MemO(2:2)) > MaxUpperCase) jx=j2+j1
1326	if(IACHAR(MemO(3:3)) > MaxUpperCase) kx=k2+k1
1327	do k=k1,k2
1328	do j=j1,j2
1329	do i=i1,i2
1330	if(IO == 'write') then
1331	XField(1:di,(k-k1+1+(k2-k1+1)((j-j1)+(i-i1)(j2-j1+1)))) = Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k))
1332	else
1333	Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k)) = XField(1:di,(k-k1+1+(k2-k1+1)((j-j1)+(i-i1)(j2-j1+1))))
1334	endif
1335	enddo
1336	enddo
1337	enddo
1338	return
1339
1340	case ('yx')
1341
1342
1343	ix=0
1344	jx=0
1345	kx=0
1346	call reorder(MemoryOrder,MemO)
1347	if(IACHAR(MemO(1:1)) > MaxUpperCase) ix=i2+i1
1348	if(IACHAR(MemO(2:2)) > MaxUpperCase) jx=j2+j1
1349	if(IACHAR(MemO(3:3)) > MaxUpperCase) kx=k2+k1
1350	do k=k1,k2
1351	do j=j1,j2
1352	do i=i1,i2
1353	if(IO == 'write') then
1354	XField(1:di,(j-j1+1+(j2-j1+1)((i-i1)+(k-k1)(i2-i1+1)))) = Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k))
1355	else
1356	Field(1:di,abs(ix-i),abs(jx-j),abs(kx-k)) = XField(1:di,(j-j1+1+(j2-j1+1)((i-i1)+(k-k1)(i2-i1+1))))
1357	endif
1358	enddo
1359	enddo
1360	enddo
1361	return
1362
1363	end select
1364	return
1365	end subroutine Transpose_hdf5
1366
1367	subroutine numtochar(TimeIndex,tname,Status)
1368
1369	use wrf_phdf5_data
1370	integer, intent(in) :: TimeIndex
1371	character(len=MaxTimeSLen),intent(out)::tname
1372	integer ,intent(out)::Status
1373	integer :: i,ten_pow,temp
1374	integer :: maxtimestep
1375
1376	maxtimestep =1
1377	do i =1,MaxTimeSLen
1378	maxtimestep = maxtimestep * 10
1379	enddo
1380	if(TimeIndex >= maxtimestep) then
1381	Status = WRF_HDF5_ERR_OTHERS
1382	write(msg,*) 'Cannot exceed the maximum timestep',maxtimestep,'in',__FILE__,' line',__LINE__
1383	call wrf_debug(FATAL,msg)
1384	return
1385	endif
1386
1387	ten_pow = 1
1388	temp =10
1389	do i =1,MaxTimeSLen
1390	tname(MaxTimeSLen+1-i:MaxTimeSLen+1-i) = achar(modulo(TimeIndex/ten_pow,temp)+iachar('0'))
1391	ten_pow = 10* ten_pow
1392	enddo
1393
1394	return
1395	end subroutine numtochar

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