[[BR]] = Description des outils et procédures utiles à la formation LMDZ = == Installation testée sur une installation Ubuntu 18.04 == Before anything, to avoid run commands with "sudo" sudo bash == 1. Installations automatiques par apt == To start with {{{ apt update apt upgrade }}} [[BR]] Base : {{{ apt install -y csh ksh keychain ncftp vim vim-gnome xournal nfs-common # base }}} {{{ apt install -y lftp apt install -y synaptic gdebi # install paquets apt install -y xfig grads imagemagick gv grace # graphique apt install -y texlive-base texlive-latex-extra texlive-lang-french latexdiff texlive-publishers #LaTeX apt isntall -y latexmk texlive-science apt install -y latex2html apt install -y texlive-extra-utils texlive-font-utils # pdfjam }}} {{{ apt install -y inkscape gimp # dessin apt install -y unoconv # conversion associee a libreoffice apt install -y qpdfview # un visualiseur remplissant mieux les pdf apt install -y traceroute # aide systeme }}} {{{ # Pour compilation dont LMDZ [[BR]] apt install -y cdo nco netcdf-bin libnetcdf-dev ncview # netcdf apt install -y gfortran g++ libblas-dev subversion git # fortran et svn apt install -y openmpi-common libopenmpi-dev openmpi-bin # openmpi apt install -y gifsicle apt install -y ekiga # conf renater sudo snap install pdftk # Autre package de concatenation de pdf apt install -y dos2unix }}} == 3. Workspace == solution assez desagreable pour revenir vers un environnement de travaill multi-bureau utilisable ... See : {{{ https://linuxconfig.org/how-to-install-gnome-shell-extensions-on-ubuntu-18-04-bionic-beaver-linux }}} {{{ sudo apt install gnome-tweak-tool sudo apt install gnome-shell-extensions apt install chrome-gnome-shell }}} Installer les "workspace grid" depuis un navigateur en suivant les informations sur {{{ https://addons.mozilla.org/en-US/firefox/addon/gnome-shell-integration/ }}} go to {{{ https://extensions.gnome.org }}} search for Gnome extensions you wish to install. For us : "Workspace Grid" Flip the ON switch to install the extension Problème Ubuntu sur les portables enseignement : l'orientation du bureau change quand on tourne l'ordinateur. == 2. python == Not as root nor su {{{ wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh chmod +x ./Miniconda3-latest-Linux-x86_64.sh ./Miniconda3-latest-Linux-x86_64.sh }}} On a new window to reinitiate the environment {{{ conda install netcdf4 h5py jinja2 pip sqlalchemy basemap matplotlib numpy scipy conda create --name python2 python=2.7 conda create --name python3 python=3.7 }}} Jupyter notebooks {{{ sudo apt install -y python3-notebook jupyter jupyter-core python-ipykernel }}} == 3. ferret install from ferret == #https://github.com/NOAA-PMEL/PyFerret/blob/master/README.md {{{ conda create -n FERRET -c conda-forge pyferret ferret_datasets --yes }}} Pour passer en mode pyferret : cd ~/miniconda3 . bin/activate FERRET == 4. acroread == Installation acrobat reader fournie par [[BR]] https://linuxconfig.org/how-to-install-adobe-acrobat-reader-on-ubuntu-18-04-bionic-beaver-linux {{{ sudo apt install -y libxml2:i386 gdebi-core wget ftp://ftp.adobe.com/pub/adobe/reader/unix/9.x/9.5.5/enu/AdbeRdr9.5.5-1_i386linux_enu.deb sudo gdebi AdbeRdr9.5.5-1_i386linux_enu.deb }}} == 5. rstudio, for tuning tools == {{{ sudo apt install r-base wget https://download1.rstudio.org/desktop/bionic/amd64/rstudio-1.2.5001-amd64.deb sudo gdebi rstudio-1.2.5001-amd64.deb sudo apt install -y r-cran-rgl libx11-dev libglu1-mesa-dev libfreetype6-dev install.packages(c("ncdf4","rstan","tensor","Hmisc","lhs","fields","rgl","shape","mco","far","DiceKriging","GenSA","mvtnorm","loo")) }}}