#!/bin/bash # # $Id: install_lmdz.sh 6067 2026-02-05 13:49:42Z snguyen $ # set -eu # error on command failure, and on unset variables export LC_ALL=C # standardize awk format ########################################################################### # Author : Laurent Fairhead et Frédéric Hourdin # Usage : install_lmdz.sh -help # # bash installation script of the LMDZ model on different computer types : # Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS) # # The model is downloaded in the following directory tree # $MODEL/modipsl/modeles/... # using the "modipsl" infrastructure created by the "IPSL" # for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling # activities. # Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE) # components. # # The sources of the models can be found in the "modeles" directory. # In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of # input-outputs using the NetCDF library). # # The script downloads various source files (including a version of NetCDF) # and utilities, compiles the model, and runs a test simulation in a # minimal configuration. # # Prerequisites : gfortran, bash or ksh, wget, gunzip, tar, ... # # Modif 18/11/2011 # changes for option real 8. # We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM # but with -r4 for netcdf. Variable real must be set to # r4 or r8 at the beginning of the script below. # Modif 04/03/2025, AI # correction in XIOS # Modif 04/03/2025, AI # correction in XIOS ########################################################################### ### Functions #----------------------------------------------------------------------------- function myget { #----------------------------------------------------------------------------- # Get a file from LMDZ repository, make it executable if .(ba)sh local url=$1 local filename filename=$(basename "$url") # Path on local computer where to look for the datafile if [ -f /u/lmdz/WWW/LMDZ/pub/$1 ] ; then \cp -f -p /u/lmdz/WWW/LMDZ/pub/$1 . elif [ -f $save_pub_dir/$1 ] ; then \cp -f -p $save_pub_dir/$1 . else echo wget --no-check-certificate -nv "http://lmdz.lmd.jussieu.fr/pub/$url" wget --no-check-certificate -nv "http://lmdz.lmd.jussieu.fr/pub/$url" if [ $? != 0 ] ; then echo wget of n\ "http://lmdz.lmd.jussieu.fr/pub/$url" terminated anormaly ; exit 1 ; fi if [ $save_pub = 1 ] ; then # saving wget files on $save_pub_dir dir=$save_pub_dir/`dirname $1` ; mkdir -p $dir cp -r `basename $1` $dir fi fi if [[ $filename =~ .*\.(ba)?sh ]]; then chmod +x "$filename"; fi } #----------------------------------------------------------------------------- function mygit { #----------------------------------------------------------------------------- # Get a file from LMDZ git repository local ingitlmdz=$1 local outdirname=$2 # Check if Git is installed if command -v git >/dev/null 2>&1; then git --version else echo "Git is not installed and is needed to download the 1D version of LMDZ." echo "Please install Git" fi git clone https://gitlab.in2p3.fr/ipsl/projets/lmdz/$ingitlmdz $outdirname } #----------------------------------------------------------------------------- function do_compile_sh { #----------------------------------------------------------------------------- local component=$1 local command=$2 local log log="$(pwd)/$component.log" printf "#!/bin/bash\n%s\n" "$command" > compile.sh if [ $component = LMDZ ] ; then echo "cd $PWD/bin ; ln -sf $exe_name_ gcm.e ; cd -" >> compile.sh ; fi # FHTBD : horrible verue à enlever ... # FHTBD : C'est pour creer le compile.sh même si on ne compile pas. if [ $bench = 1 -o $bench = compile_only -o $component != LMDZ ] ; then echo "Compiling $component using $command (log: $log) $(date)" chmod +x ./compile.sh if ! ./compile.sh &> "$log"; then echo "STOP: $component compilation failed, exiting"; exit 1 fi echo "Finished $component compilation $(date)" fi } #----------------------------------------------------------------------------- function get_svn_branch { #----------------------------------------------------------------------------- local url=$1 local rev=$2 local res res=$(svn log -v -q "$url" -r "$rev" -l 1 | cut -d "/" -f -4) if echo "$res" | grep -q "/trunk/"; then res=$(echo "$res" | grep "/trunk/" | head -1 | cut -d "/" -f 2-3) elif echo "$res" | grep -q "/branches/"; then res=$(echo "$res" | grep "/branches/" | head -1 | cut -d "/" -f 2-4) else echo "Could not determine svn branch for $url, r=$rev" fi echo "$res" } #----------------------------------------------------------------------------- function set_default_params { #----------------------------------------------------------------------------- # Valeur par défaut des parametres svn_lmdz="" version="20251128.trunk" netcdf=1 bench=1 SCM=0 veget="none" grid_resolution="32x32x39" benchphysiq="" compphysiq="lmd" is_1D="n" fortran_file="gcm" parallel="none" trusting="testing" MODEL="" with_xios=0 opt_makelmdz_xios="" icolmdz=0 dynamico_commit="b5c467a8" icosalmdz_rev="5849" rad="rrtm" compile_with_fcm=1 cosp="none" aerosols=0 strataer=0 inlandsis=0 make_j=8 clean_install=1 local="$(pwd)" # Check if on a Mac /!\ Probably doesn't work anymore, to fix one day... if [[ $(uname) = "Darwin" ]]; then export MAKE="make" fi optim_flag="-prod" arch="local" arch="local-gfortran" arch_dir="" jobcmd="" verbose=0 save_pub=0 save_pub_dir=$HOME/LMDZ/pub config_name=Bench } #----------------------------------------------------------------------------- function read_cmdline_args { #----------------------------------------------------------------------------- while (($# > 0)); do case $1 in "-v") version=$2; shift 2 ;; "-r") svn_lmdz=$2; shift 2 ;; "-d") grid_resolution=$2; shift 2 ;; "-unstable") trusting="unstable"; shift;; "-cosp") cosp=$2 case $cosp in "none"|"v1"|"v2") cosp=$2; shift 2 ;; *) echo "Only none v1 v2 for cosp option"; exit 1 esac;; "-nofcm") compile_with_fcm=0; echo "This option will be reactivated soon (promesse du 8dec2022)"; exit 1; shift;; "-SCM") SCM=1; shift;; "-rad") rad=$2 case $rad in "oldrad"|"rrtm"|"ecrad") rad=$2; shift 2 ;; *) echo "Only oldrad rrtm ecrad for rad option"; exit 1 esac;; "-parallel") parallel=$2 case $parallel in "none"|"mpi"|"omp"|"mpi_omp") parallel=$2; shift 2 ;; *) echo "Only none mpi omp mpi_omp for the parallel option"; exit 1 esac;; "-bench") bench=$2; shift 2 ;; "-debug") optim_flag="-debug"; shift;; "-name") MODEL=$2; shift 2 ;; "-netcdf") netcdf=$2; shift 2 ;; "-benchphysiq") benchphysiq=$2; shift 2 ;; "-compilephysiq") compphysiq=$2; shift 2 ;; "-xios") with_xios=1; shift;; "-arch") arch=$2; shift 2 ;; "-arch_dir") arch_dir=$2; shift 2 ;; "-veget") veget=$2; shift 2 ;; "-spla") aerosols=1; shift ;; "-strataer") strataer=1; shift ;; "-inlandsis") inlandsis=1; shift ;; "-make_j") make_j=$2; shift 2 ;; "-jobcmd") jobcmd=$2; shift 2 ;; "-noclean") clean_install=0; shift ;; "-icolmdz") icolmdz=1; shift ;; "-verbose") verbose=1; shift ;; "-save_pub") save_pub=1 ; shift ;; "-save_pub_dir") save_pub_dir=$2 ; shift 2 ;; "-config") config_name=$2 ; shift 2 ;; "-build_dir") build_dir=$2 ; shift 2 ;; "-h" | *) cat <<........fin $0 [ -v version ] [ -r svn_release ] [ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ] [-name LOCAL_MODEL_NAME] [-rad RADIATIF] -v "version" like 20150828.trunk, see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk (default <$version>) -r "svn_release" : either the svn release number or "last" (default <$svn_lmdz>) -parallel parallel support: mpi, omp, mpi_omp (mpi with openMP) or none (default: <$parallel>) -d "grid resolution": should be among the available benchs if -bench 1 (valid values: 48x36x19, 48x36x39) (default : <$grid_resolution>) -bench activating the bench or not (0/1/tuto/compile_only) (default: <$bench>) -unstable use unstable tar instead of testing -name name of the folder to install to (default <$MODEL>) -netcdf 0, 1 or PATH. 0: do not download NetCDF, look for it in standard locations (/usr); 1: download and compile NetCDF; PATH: full path to an existing installed NetCDF library (default: <$netcdf>) -xios use (download and compile) the XIOS library (will compile the parallel NetCDF4-HDF5 library) (requires to also have -parallel mpi_omp) -cosp to run with cospv1 or cospv2 [none/v1/v2] (default <$cosp>) -rad radiative code: oldrad, rrtm or ecrad (default <$rad>) -nofcm to compile without fcm -SCM install 1D version automatically -debug compile everything in debug mode -benchphysiq to choose which physics.def package to use in the bench (default <$benchphysiq>) -compilephysiq physics to compile the model with (default <$compphysiq>) -veget surface/vegetation scheme treatment controlled by the single variable veget which can have the following values: none: bucket scheme (default); CMIP6 | orch2.0: orchidee version used in CMIP exercise, rev 5661; orch2.2: orchidee branch 2.2, rev 8529 (bundled); number: orchidee version number [only orch>2.0] (default $veget) -spla activate interactive aerosols -inlandsis activate new snow scheme -arch name of the arch to use (default <$arch>) -arch_dir where to find the arch files (default <$arch_dir>) -make_j number of processes to parallelize installations (default <$make_j>) -jobcmd command prepended to fcm compile jobs, e.g. "srun" (default <$jobcmd>) -save_pub Saves files from local mirror of http://lmdz.lmd.jussieu.fr/pub -save_pub_dir for saving/geting files from local mirror of http://lmdz.lmd.jussieu.fr/pub -noclean will only download necessary files (but no thorough check is made on the integrity of existing files), and will recompile everything (very quick if it's already been compiled before) -icolmdz to compile the icolmdz executable as well as the lonlat one -verbose to print every executed command -config config name -build_dir directory in which your build is to be done ........fin exit 0;; esac done # Isotopes : Compile and run with isotopes if lmdz_phys="lmdiso" in main.sh if [[ $compphysiq = "lmdiso" ]]; then isotopes=1; else isotopes=0; fi # Option de compilation pour Cosp case $cosp in v1) opt_cosp="-cosp true";; v2) opt_cosp="-cospv2 true";; *) opt_cosp="" esac #Define veget-related suffix for gcm name if [[ $veget = 'none' ]]; then suff_orc='' else suff_orc='_orch' fi if [[ $parallel = "none" ]]; then suff_para='_seq' else suff_para='_para_mem' fi if [[ $with_xios = 1 ]]; then opt_makelmdz_xios="-io xios"; fi if [[ $aerosols = 1 ]]; then opt_aer="-dust true"; suff_aer="_spla" else opt_aer=""; suff_aer="" fi if [[ $strataer = 1 ]]; then opt_strataer="-strataer true" else opt_strataer="" fi if [[ $inlandsis = 1 ]]; then opt_inlandsis="-inlandsis true" else opt_inlandsis="" fi if [[ $isotopes = 1 ]]; then opt_isotopes="-isotopes true"; suff_iso="_iso" else opt_isotopes="" ; suff_iso="" fi # set default arch if parallel if [[ $arch = "local-gfortran" && $parallel != "none" ]]; then arch="local-gfortran-parallel" echo "Switching default arch to $arch" fi # Name of the model's folder. The convention taken here is that models that requires different compilation sources should have a different names. local xios_name="" if [[ $with_xios = 1 ]]; then xios_name="XIOS"; fi if [[ $MODEL = "" ]]; then MODEL="./LMDZ$version${svn_lmdz}OR$veget$xios_name"; fi if [[ $arch_dir = "" ]]; then arch_dir="$MODEL/modipsl/config/IPSLCM7/ARCH/"; elif ! readlink -fe "$arch_dir" >/dev/null; then echo "STOP: no arch dir <$arch_dir>"; exit 1 fi if ! (echo "$grid_resolution" | grep -q "x"); then is_1D="y" fortran_file="lmdz1d" fi if [[ $verbose = 1 ]]; then set -vx; fi } #----------------------------------------------------------------------------- function ensure_correct_option_combinations { #----------------------------------------------------------------------------- # Check on veget version if [[ $veget != 'none' && $veget != "CMIP6" && $veget != "orch2.0" && $veget != "orch2.2" ]]; then re='^[0-9]+$' if ! [[ $veget =~ $re ]]; then echo 'Valeur de l option veget non valable'; exit 1 fi fi ## if compiling icolmdz, XIOS must be set if [[ $icolmdz = 1 && $with_xios = 0 ]]; then echo "Error, you must set -xios to compile the icolmdz executable"; exit 1 fi ## if also compiling XIOS, parallel must be mpi_omp if [[ $with_xios = 1 && $parallel != "mpi_omp" ]]; then echo "Error, you must set -parallel mpi_omp if you want XIOS"; exit 1 fi if [[ $cosp = "v2" && $with_xios = 0 ]]; then echo "Error, Cospv2 cannot run without Xios"; exit 1 fi # STOP if trying to use both ORCHIDEE and Isotopes : if [[ $isotopes = 1 && $veget != "none" ]]; then echo "STOP: You cannot run LMDZ with ORCHIDEE and ISOtopes at the same time"; exit 1 fi # STOP if trying to use both SPLA and Isotopes : if [[ $isotopes = 1 && $aerosols = 1 ]]; then echo "STOP: You cannot run LMDZ with Isotopes and aerosols=spla at the same time"; exit 1 fi # (Temporary) STOP if trying to use Isotopes with XIOS : if [[ $isotopes = 1 && $with_xios = 1 ]]; then echo "STOP: Isotopes cannont yet be run with XIOS"; exit 1 fi if [[ $aerosols = 1 && $rad != "rrtm" ]]; then echo "STOP: For the time being, requires "; exit 1 fi } #----------------------------------------------------------------------------- function check_available_software { #----------------------------------------------------------------------------- local required_soft=("wget" "tar" "gzip" "make" "gcc" "cmake" "m4" "c++") echo "Checking if required software is available (${required_soft[*]})" for logiciel in "${required_soft[@]}"; do if [[ $(which "$logiciel") = "" ]]; then echo "You must first install $logiciel on your system"; exit 1 fi done } #----------------------------------------------------------------------------- function download_modipsl_tar { #----------------------------------------------------------------------------- if [[ $clean_install = 1 && -d $MODEL ]]; then local ans echo "$MODEL already exists. Do you want to erase it and proceed (Y/n) ? You can also rerun with \`-noclean\` to only recompile the necessary components." read -r ans ans="${ans,,}" # to lowercase if [[ $ans != "y" ]]; then exit 0; fi rm -rf "$MODEL" fi mkdir -p "$MODEL" MODEL=$(readlink -e -f "$MODEL"); echo "MODEL: $MODEL" # absolute path if [[ ! -d "$MODEL/modipsl" ]]; then echo "Downloading a slightly modified version of modipsl+LMDZ" cd "$MODEL" getlog="$(pwd)/get.log" echo "logfile : $getlog" set +e; myget "src_archives/$trusting/modipsl.$version.tar.gz" &>> "$getlog"; set -e if [[ ! -f "modipsl.$version.tar.gz" ]]; then echo "STOP: failed to download modipsl. $getlog: <$(tail "$getlog")>"; exit 1 fi echo "install_lmdz.sh wget_OK $(date)" gunzip "modipsl.$version.tar.gz" &>> $getlog tar xf "modipsl.$version.tar" &>> $getlog rm "modipsl.$version.tar" fi } #----------------------------------------------------------------------------- function init_arch { #----------------------------------------------------------------------------- cd "$local" set +e; arch_dir=$(readlink -f "$arch_dir"); set -e # full path. readlink must be called *after* the path is created # Check where default fcm, path, env are located - by default in $arch_path, instead in $MODEL/modipsl/modeles/LMDZ/arch/ local i fcm_path path_path env_path for i in "path" "fcm" "env"; do local varname=${i}_path if [[ -f $arch_dir/arch-$arch.$i ]]; then declare $varname="$arch_dir/arch-$arch.$i" else declare $varname="$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$i" if [[ ! -f ${!varname} ]]; then echo "STOP: no ${!varname}"; exit 1 fi fi done default_fcm_path=$fcm_path default_path_path=$path_path default_env_path=$env_path # check compiler compiler=$(< "$default_fcm_path" grep "%COMPILER" | sed -e "s/%COMPILER\s*//") # ------------------------------------------------------------------------------------------ # Specific problem with fortran version changes # Introduit le 1er fevrier 2025 par FH. A retravailler # Could be generaized to download a arch tar file if the arch is not available in the current # distribution of LMDZ # ------------------------------------------------------------------------------------------ echo QUOI $compiler if [ $compiler = gfortran -o $compiler = mpif90 ] ; then echo QUOI on est la if [ $( gfortran --version | head -1 | awk ' { print $NF } ' | cut -d. -f1 ) -le 9 ] ; then echo QUOI faire qqchose if [ $parallel = none ] ; then arch=local-gfortran9 else arch=local-gfortran9-parallel fi # Momentanement on ecrase les arch gfortran9 meme parallele qui sont fausses if [ ! -f $arch_dir/arch-local-gfortran9.fcm ] ; then arch_dir=$PWD/arch wget http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/LMDZ/arch-local-gfortran9.tar tar xvf arch-local-gfortran9.tar fi default_fcm_path=$arch_dir/arch-${arch}.fcm default_path_path=$arch_dir/arch-${arch}.path default_env_path=$arch_dir/arch-${arch}.env fi fi # ------------------------------------------------------------------------------------------ # load env if [[ -f $default_env_path ]]; then source "$default_env_path"; fi local mpi_file # can't be done before as it depends on sourcing the env if [[ $parallel != "none" ]]; then if [[ $(which "mpif90") = "" ]]; then echo "STOP: parallel=$parallel but could not be found"; exit 1 fi mpi_file=$(readlink -e -f "$(which mpif90)") path_mpi=$(dirname "$mpi_file") root_mpi=$(dirname "$path_mpi") fi } #----------------------------------------------------------------------------- function check_compiler { #----------------------------------------------------------------------------- # Must be called after init_arch to know which compiler to use cat < tt.f90 print*,'coucou' end eod $compiler tt.f90 || a.out ./a.out >| tt if [[ $(< tt sed -e 's/ //g' ) != "coucou" ]]; then echo "problem installing with compiler $compiler"; exit 1 fi rm tt a.out tt.f90 } #----------------------------------------------------------------------------- function install_arch { #----------------------------------------------------------------------------- local component=$1 # Use same .env for all components (for module compatibility) cp -f "$default_env_path" "$MODEL/modipsl/modeles/$component/arch" &> /dev/null || true # allow failure if we're copying the file to itself # Use local .path and .fcm if available, otherwise default if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.path" ]]; then cp -f "$default_path_path" "$MODEL/modipsl/modeles/$component/arch" if [[ $component = "ORCHIDEE" ]]; then if [[ $orcbranch = "/tags/ORCHIDEE_2_0/ORCHIDEE" ]]; then # 2.0 and before have a different fcm convention sed -i'' -e "s/-I//" -e "s/-L//" "$MODEL/modipsl/modeles/ORCHIDEE/arch/arch-$arch.path" # /!\ we only replace first occurence on purpose fi if [[ $veget = "CMIP6" ]]; then # bundled version has a different fcm convention sed -i'' -e "s/-I//" -e "s/-L//" "$MODEL/modipsl/modeles/ORCHIDEE/arch/arch-$arch.path" # /!\ we only replace first occurence on purpose fi fi fi if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.fcm" ]]; then cp -f "$default_fcm_path" "$MODEL/modipsl/modeles/$component/arch" if [[ $component = "XIOS" ]]; then # Adapt for XIOS, which uses different naming conventions sed -i'' -e "s/%COMPILER/%FCOMPILER/" -e "s/%LINK/%LINKER/" -e "s/-fdefault-real-8//" "$MODEL/modipsl/modeles/XIOS/arch/arch-$arch.fcm" fi fi } #----------------------------------------------------------------------------- function install_netcdf { #----------------------------------------------------------------------------- # Netcdf can be either compiled from source or the library can be linked from the system. # During the compilation, the location of the library and input files is given in # arch.path as # NETCDF_INCDIR="-I$(nf-config --includedir) -I$(nc-config --includedir)" # NETCDF_LIBDIR="-L$(nf-config --flibs | sed -e "s/-L//")" # in order to actiavte the proper nc-config command when netcdf is compiled from crash # the path to the compiled ilbrary and include files is added to the arch.path file # export PATH="/home/hourdin/LMDZ/pub//netcdf4_hdf5_seq/bin:.:/home..." echo "Installing Netcdf" local ncdf_compiler="$compiler" if [[ $netcdf = 0 ]]; then ncdfdir=$(nf-config --prefix) else cd "$MODEL" # Convert non-basic compiler case $compiler in mpif90) ncdf_compiler=$($compiler --version | head -n 1 | cut -d " " -f -1) esac case $ncdf_compiler in gfortran | GNU) ncdf_compiler="gfortran"; opt1="-compiler gnu"; opt2="-CC gcc -FC gfortran -CXX g++";; *) echo "unexpected compiler $ncdf_compiler for netcdf"; exit 1 esac case $with_xios in 0) script_install_netcdf="install_netcdf4_hdf5_seq.bash" ncdfdir="netcdf4_hdf5_seq" opt_="$opt1";; 1) script_install_netcdf="install_netcdf4_hdf5.bash" ncdfdir="netcdf4_hdf5" opt_="$opt2 -MPI $root_mpi";; *) echo "with_xios=$with_xios, should be 0 or 1"; exit 1 esac if [[ $netcdf = 1 ]]; then ncdfdir="$MODEL/$ncdfdir" else mkdir -p "$netcdf"; ncdfdir="$netcdf/$ncdfdir" fi echo "Repertoire netcdf $ncdfdir" if [[ ! -d $ncdfdir ]]; then netcdflog=$(pwd)/netcdf.log echo "----------------------------------------------------------" echo "Compiling the Netcdf library" echo "----------------------------------------------------------" echo "log file : $netcdflog" myget script_install/$script_install_netcdf &>> "$netcdflog" chmod u=rwx $script_install_netcdf # shellcheck disable=SC2086 ./$script_install_netcdf -prefix "$ncdfdir" $opt_ &>> "$netcdflog" fi # Add to path export PATH="$ncdfdir/bin:$PATH" echo "Bin PATH" $PATH #---------------------------------------------------------------------------- # LF rajout d'une verrue, pour une raison non encore expliquee, # la librairie est parfois rangée dans lib64 et non dans lib # par certains compilateurs if [[ ! -e lib && -d lib64 ]]; then ln -s lib64 lib; fi #---------------------------------------------------------------------------- echo "install_lmdz.sh netcdf_OK $(date)" fi # add exported netcdf path to .env if not already the case. This ensures we always use the same netcdf library as during the first install. if [[ $(nf-config --prefix) = "" || $(nc-config --prefix) = "" ]]; then echo "STOP: missing nf-config or nc-config in \$PATH"; exit 1 fi local env_msg env_msg_tail env_msg_tail="# netcdf bin path auto-added by install_lmdz.sh" env_msg="export PATH=\"$PATH:\$PATH\" $env_msg_tail" if ! < "$default_env_path" grep -q "$env_msg_tail"; then sed -i "1s@^@$env_msg\n@" "$default_env_path" fi # Test if netcdf works fine on a simple program cat >test_netcdf90.f90 <@#include @' \ earcut.hpp > tmp \mv -f tmp earcut.hpp cd ../../.. install_arch "XIOS" do_compile_sh "XIOS" "$jobcmd ./make_xios --job $make_j --arch $arch" fi } #----------------------------------------------------------------------------- function get_orchidee_version { # Set / Check ORCHIDEE version #----------------------------------------------------------------------------- echo "Checking Orchidee source version" local fetch_rev="" orcbranch="" case $veget in "none") fcm_veget_version="false";; # "orch2.0" | "CMIP6") fcm_veget_version=orchidee2.0; fetch_rev=7906;; # in previous tar we used 6592 but with some modifications to xios_orchidee.f90, which got integrated in 7906 "orch2.0" | "CMIP6") fcm_veget_version=orchidee2.0;; # in previous tar we used 6592 but with some modifications to xios_orchidee.f90, which got integrated in 7906 "orch2.2") fcm_veget_version=orchidee2.1; orcbranch="/branches/ORCHIDEE_2_2/ORCHIDEE" ;; # the bundled version *) fetch_rev=$veget; fcm_veget_version=orchidee2.1;; # /!\ arbitary rev only works for orch>=2.1 # /!\ Note: for orch>=4, we should be using fcm_vegt_version="orchideetrunk". Below copied comment by Adriana in LMDZ_Setup docs: # Avec orchidee2.1, on va compiler LMDZ avec le cle cpp ORCHIDEE_NOLIC. On ne va donc pas prendre en compte les avancements fait dans le trunk qui permet que les fractions lic soitent traité par ORCHIDEE. Ca marche très bien sans cela puisque dans tout façon c'est en cours de développement et ce n'est pas activé par default. En fait on devrait compiler le trunk avec -v orchideetrunk mais avec landice_opt>2, ce qui ne change rien par rapport à orchidee2.1 #Si on voudrait activer landice_opt=2 , il faut compiler avec -v orchideetrunk. esac if [[ -n $fetch_rev ]]; then echo "IF YOU INSTALL ORCHIDEE THE VERY FIRST TIME, ASK for PASSWORD at orchidee-help@listes.ipsl.fr" local curr_rev curr_rev=$(svn info "$MODEL/modipsl/modeles/ORCHIDEE" | grep Revision: | cut -d ":" -f 2 | cut -c 2-) orcbranch=$(svn log -v -q svn://forge.ipsl.fr/orchidee/ -r "$fetch_rev" | grep ORCHIDEE | head -1 | sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' | awk '{print $2}') if [[ $fetch_rev != "$curr_rev" ]]; then echo "Fetching orch $fetch_rev from the repository (curr: $curr_rev)" echo "branch is $orcbranch" if [[ $fetch_rev -lt 4465 ]]; then echo 'ORCHIDEE version must be >=4465, exiting'; exit 1; fi cd "$MODEL/modipsl/modeles" rm -rf ORCHIDEE svn co -r "$fetch_rev" "svn://forge.ipsl.fr/orchidee/$orcbranch" cd - > /dev/null fi fi # Check parallel LMDZ+ORCH if [[ (! $veget = "none") && $parallel = "none" && ($used_lmdz_rev -lt 4894) ]]; then echo "LMDZ revision must be >=4894 for orchidee without parallel support. Upgrade lmdz or use -parallel mpi_omp."; exit 1 fi } #----------------------------------------------------------------------------- function compile_orchidee { #----------------------------------------------------------------------------- install_arch "ORCHIDEE" if [[ $veget != "none" ]]; then cd "$MODEL/modipsl/modeles/ORCHIDEE" local xios_orchid if [[ $with_xios = 1 ]]; then xios_orchid="-xios"; else xios_orchid="-noxios" fi if [[ $parallel != "none" && ! -d src_parallel ]]; then echo "STOP: Orchidee version too old for parallel support"; exit 1 fi do_compile_sh "ORCHIDEE" "$jobcmd ./makeorchidee_fcm -j $make_j $xios_orchid $optim_flag -parallel $parallel -arch $arch" fi } #----------------------------------------------------------------------------- function get_lmdz_version { #----------------------------------------------------------------------------- echo "Checking LMDZ source version" LMDZPATH=$(readlink -e -f "$MODEL/modipsl/modeles/LMD"*) cd "$LMDZPATH" if [[ -n $svn_lmdz ]]; then local curr_rev curr_rev=$(svn info "$MODEL/modipsl/modeles/LMD"* | grep Revision: | cut -d ":" -f 2 | cut -c 2-) if [[ $svn_lmdz != "$curr_rev" ]]; then local lmdzbranch echo "Fetching LMDZ $svn_lmdz from the repository" # lmdzbranch=$(get_svn_branch "https://svn.lmd.jussieu.fr/LMDZ" "$svn_lmdz") lmdzbranch=$(get_svn_branch "http://svn.lmd.jussieu.fr/LMDZ" "$svn_lmdz") echo "branch is $lmdzbranch" cd "$MODEL/modipsl/modeles" rm -rf LMD* # svn co -r "$svn_lmdz" "https://svn.lmd.jussieu.fr/LMDZ/$lmdzbranch" LMDZ svn co -r "$svn_lmdz" "http://svn.lmd.jussieu.fr/LMDZ/$lmdzbranch" LMDZ cd - > /dev/null fi used_lmdz_rev=$svn_lmdz else # get svn from info set +e; used_lmdz_rev=$(svn info | grep "Last Changed Rev" | cut -c 19-); set -e if [[ -z $used_lmdz_rev ]]; then # svn info failed used_lmdz_rev=$(grep 'Revision: [0-9]' "$MODEL"/Read*.md | awk ' { print $2 } ' 2>/dev/null) if [[ -z $used_lmdz_rev ]]; then echo "Could not determine lmdz version. This is likely an issue with the .tar itself, please report to LMDZ team."; exit 1; fi fi fi } #----------------------------------------------------------------------------- function compile_lmdz { #----------------------------------------------------------------------------- if [[ $bench = "tuto" ]]; then echo No need to compile if installing TUTORIAL else install_arch "LMDZ" cd "$LMDZPATH" if [[ $used_lmdz_rev -le 4185 ]]; then exe_name_="${fortran_file}_${grid_resolution}_phy${compphysiq}_${suff_para}${suff_orc}${suff_aer}${suff_iso}.e" else exe_name_="${fortran_file}_${grid_resolution}_phy${compphysiq}_${rad}${suff_para}${suff_orc}${suff_aer}${suff_iso}.e" fi exe_name=bin/$exe_name_ local opt_rad case $rad in oldrad) iflag_rrtm=0; NSW=2; opt_rad="";; rrtm) iflag_rrtm=1; NSW=6 if [[ $used_lmdz_rev -le 4185 ]]; then opt_rad="-rrtm true" else opt_rad="-rad rrtm" fi;; ecrad) iflag_rrtm=2; NSW=6; opt_rad="-rad ecrad";; *) echo "Only oldrad rrtm ecrad for rad option"; exit 1 esac if [[ $used_lmdz_rev -le 4185 && $rad = "ecrad" ]]; then echo "ecrad only available for LMDZ rev starting with 4186 "; exit 1 fi # Compile local build_opt="-config $config_name"; if [[ ! -z ${build_dir+x} ]]; then build_opt="$build_opt -build_dir $build_dir"; fi local makelmdz="makelmdz_fcm $optim_flag $build_opt -arch $arch -j $make_j" local para_compile_opt="-mem -parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi do_compile_sh "LMDZ" "$jobcmd ./$makelmdz $opt_rad $opt_cosp $opt_makelmdz_xios $opt_aer $opt_inlandsis $opt_strataer $opt_isotopes -p $compphysiq -d ${grid_resolution} -v $fcm_veget_version $para_compile_opt $fortran_file" # Check executable # FHTBD : Nettoyer tout ça en douceur mais sans trainer # name of executable changed with new makelmdz_fcm (revision 5743) if [[ -z ${build_dir+x} ]]; then build_dir=libo; fi if [[ -x $build_dir/$config_name/gcm ]]; then exe_name=$build_dir/$config_name/gcm fi if [ $bench = 1 -o $bench = compile_only ] ; then if [[ ! -f $exe_name ]]; then echo "STOP: Compilation failed, can't find the executable"; exit 1 else echo "Compilation successful, the executable is $exe_name $(date)" fi else echo "You should now be able to compile the model with command" echo "$MODEL/modipsl/modeles/LMDZ/compile.sh" fi fi } #----------------------------------------------------------------------------- function get_dynamico_icosa_version { #----------------------------------------------------------------------------- if [[ $icolmdz = 1 ]]; then echo "Checking DYNAMICO source version" cd "$MODEL/modipsl/modeles" if [[ ! -d DYNAMICO ]]; then git clone https://gitlab.in2p3.fr/ipsl/projets/dynamico/dynamico.git DYNAMICO fi cd DYNAMICO git checkout master && git checkout $dynamico_commit cd - > /dev/null echo "Checking ICOSA_LMDZ source version" if [[ ! -d ICOSA_LMDZ ]]; then svn checkout http://svn.lmd.jussieu.fr/LMDZ/ICOSA_LMDZ fi cd ICOSA_LMDZ svn up -r $icosalmdz_rev fi } #----------------------------------------------------------------------------- function compile_icolmdzor { #----------------------------------------------------------------------------- if [[ $icolmdz = 1 ]]; then install_arch "ICOSA_LMDZ" local para_compile_opt="-parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi # LMDZ physics package library already available in LMDZ/config/lib directory # Compile DYNAMICO cd "$MODEL/modipsl/modeles/DYNAMICO" # Need to get rather than install the archs as DYNAMICO uses FCMv2 that does not understand the makefile syntax ($shell) cd arch wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.env" wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.fcm" wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.path" cd .. do_compile_sh "DYNAMICO" "$jobcmd ./make_icosa $optim_flag -arch $arch -job $make_j $para_compile_opt -external_ioipsl -with_xios" # Compile icosa_lmdz echo "Bin PATH before icosalmdz" "$PATH" cd "$MODEL/modipsl/modeles/ICOSA_LMDZ" if [[ $veget = 'none' ]]; then opt_orch='' else opt_orch='-with_orchidee' fi do_compile_sh "ICOSA_LMDZ" "$jobcmd ./make_icosa_lmdz -arch $arch -j $make_j -nodeps -p lmd $optim_flag $para_compile_opt $opt_orch" echo "# Running environment for icosa_lmdz" > icosalmdz.env echo "# " >> icosalmdz.env if [[ -v LD_LIBRARY_PATH ]]; then echo "export LD_LIBRARY_PATH=$ncdfdir/lib:$LD_LIBRARY_PATH" >> icosalmdz.env else echo "export LD_LIBRARY_PATH=$ncdfdir/lib" >> icosalmdz.env fi fi } #----------------------------------------------------------------------------- function run_bench { #----------------------------------------------------------------------------- local bench_cmd="./bench.sh" cd "$MODEL/modipsl/modeles/LMDZ"* if [[ $bench = "tuto" ]]; then myget "Training/tutorial.tar"; tar xf tutorial.tar echo '!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!' echo A directory $PWD/TUTORIAL echo has been downloaded in which you can compile, intitialize echo and then run a simulation with a zoomed grid by running ./init.sh echo after modifying some input parameters in .def files in DEF/ echo '!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!' elif [[ $bench = 1 ]]; then rm -rf "BENCH${grid_resolution}" local bench=bench_lmdz_${grid_resolution} if [[ $compphysiq = "lmdiso" ]]; then bench=bench_lmdz_iso_${grid_resolution}; fi if [[ $is_1D = "y" ]] ; then # 1D myget "1D/1D.tar.gz" mkdir -p "BENCH${grid_resolution}" tar xf "1D.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1 cd "BENCH${grid_resolution}" # Below: ugly, but until we rewrite the 1D case... sed -i'' -e "s:^listecas=.*$:listecas=ARMCU/REF:" -e "s:cd \$local/bin ; ./compile -L \$L:#cd \$local/bin ; ./compile -L \$L:" \ -e "s:./compile -L \$llm:#./compile -L \$llm:" -e "s:ln -sf \$bin/\\\\\${main}\${suffixe}.e .:ln -sf ../../../../../$exe_name \\\\\${main}\${suffixe}.e:" -e "s:gzip listing:cp listing restartphy.nc ../../../../; exit 0:" \ run.sh cp "../$exe_name" bin/ bench_cmd="./run.sh -rad $rad" # suppress ferret commands that launch after bench is "over" else myget "3DBenchs/$bench.tar.gz" mkdir "BENCH${grid_resolution}" tar xf "$bench.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1 if [[ $cosp = "v1" || $cosp = "v2" ]]; then cd "BENCH${grid_resolution}" # copier les fichiers namelist input et output our COSP cp ../DefLists/cosp*_input_nl.txt . cp ../DefLists/cosp*_output_nl.txt . # Activer la cles ok_cosp pour tourner avec COSP sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp \mv -f tmp config.def cd .. fi if [[ -n "$benchphysiq" ]]; then cd "BENCH${grid_resolution}" if [[ -f "physiq.def_${benchphysiq}" ]]; then cp "physiq.def_${benchphysiq}" benchphysiq.def echo "using physiq.def_${benchphysiq}" else echo "using standard physiq.def" fi cd .. else echo "using standard physiq.def" fi if [[ $with_xios = 1 ]]; then cd "BENCH${grid_resolution}" cp ../DefLists/iodef.xml . cp ../DefLists/context_lmdz.xml . cp ../DefLists/field_def_lmdz.xml . # A raffiner par la suite echo "A FAIRE : Copier les *xml en fonction de l option cosp" cp ../DefLists/field_def_cosp*.xml . cp ../DefLists/file_def_hist*xml . # adapt iodef.xml to use attached mode sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' \ iodef.xml > tmp \mv -f tmp iodef.xml # and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE. # except for histday for histfile in file_def_hist*xml; do if [[ "$histfile" = "file_def_histday_lmdz.xml" ]]; then sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' \ "$histfile" > tmp \mv -f tmp "$histfile" sed -e 's@output_level="_AUTO_"@output_level="5"@' "$histfile" \ > tmp \mv -f tmp "$histfile" sed -e 's@compression_level="2"@compression_level="0"@' \ "$histfile" > tmp \mv -f tmp "$histfile" else sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \ "$histfile" > tmp \mv -f tmp "$histfile" fi done # and add option "ok_all_xml=y" in config.def echo "### XIOS outputs" >> config.def echo 'ok_all_xml=.true.' >> config.def #activer les sorties pour Cosp if [[ "$cosp" = "v1" ]]; then sed -i'' -e 's@enabled=".FALSE."@enabled=".TRUE."@' \ -e 's@output_level="_AUTO_"@output_level="5"@' \ -e 's@compression_level="2"@compression_level="0"@' \ file_def_histdayCOSP_lmdz.xml fi if [[ "$cosp" = "v2" ]]; then sed -i'' -e 's@compression_level="2"@compression_level="0"@' file_def_histdayCOSPv2_lmdz.xml for type_ in hf day mth; do file=file_def_hist${type_}COSP sed -i'' -e 's@src="./'${file}'_lmdz.xml"@src="./'${file}'v2_lmdz.xml"@' context_lmdz.xml done sed -i'' -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' field_def_lmdz.xml fi cd .. fi # Cas Bench avec ecrad if [[ $rad = "ecrad" ]]; then cd "BENCH${grid_resolution}" cp ../DefLists/namelist_ecrad . cp -r ../libf/phylmd/ecrad/data . cd .. fi # Adjusting bench physiq.def to radiative code chosen cd "BENCH${grid_resolution}" sed -e 's/iflag_rrtm=.*.$/iflag_rrtm='$iflag_rrtm'/' \ -e 's/NSW=.*.$/NSW='$NSW'/' physiq.def > tmpdef \mv tmpdef physiq.def cd .. cp "$exe_name" "BENCH${grid_resolution}/gcm.e" cd "BENCH${grid_resolution}" if [[ ${parallel:0:3} = "mpi" ]]; then # Lancement avec deux procs mpi et 2 openMP echo "export OMP_STACKSIZE=800M" > bench.sh if [[ "${parallel:4:3}" = "omp" ]]; then echo "export OMP_NUM_THREADS=2" >> bench.sh fi if [[ $cosp = "v1" || $cosp = "v2" ]]; then echo "ulimit -s 200000" >> bench.sh else echo "ulimit -s unlimited" >> bench.sh fi if [[ $(which "mpirun") != "" ]]; then echo "mpirun -np 2 gcm.e &> listing" >> bench.sh elif grep -q "Adastra" /etc/motd; then local account account=$(/usr/sbin/my_project.py -l 2>&1 | head -1 | cut -d " " -f 3- | cut -c 5-) bench_cmd="srun --nodes=1 --ntasks=1 --cpus-per-task=2 --threads-per-core=2 --time=0:10:00 --constraint=GENOA --account=$account bash bench.sh" echo "./gcm.e &> listing" >> bench.sh else echo "Error: No command found to run parallel bench"; exit 1 fi if [[ $(hostname | cut -c -6) = "spirit" ]]; then # ulimit unlimited segfaults on Spirit sed -i'' "s/ulimit -s unlimited/ulimit -Ss 8000/" bench.sh fi # Add rebuild, using reb.sh if it is there cat <> bench.sh if [[ -f reb.sh ]]; then ./reb.sh histday; ./reb.sh histmth; ./reb.sh histhf; ./reb.sh histins; ./reb.sh stomate_history; ./reb.sh sechiba_history; ./reb.sh sechiba_out_2 fi EOF else echo "./gcm.e &> listing" > bench.sh fi chmod +x bench.sh # Getting orchidee stuff if [[ $veget = 'CMIP6' || $veget = "orch2.0" ]]; then # TODO once we have a 2.2 bench, add it here (or in planned separate bench script) echo 'myget 3DBenchs/BENCHCMIP6.tar.gz' myget 3DBenchs/BENCHCMIP6.tar.gz tar xvzf BENCHCMIP6.tar.gz sed -e "s:VEGET=n:VEGET=y:" config.def > tmp mv -f tmp config.def if [[ $with_xios = 1 ]]; then cp ../../ORCHIDEE/src_xml/context_orchidee.xml . echo '' > add.tmp cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml . cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml . cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml . if [[ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ]]; then cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml . echo '' >> add.tmp fi sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp mv tmp iodef.xml sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' \ file_def_orchidee.xml > tmp \mv -f tmp file_def_orchidee.xml sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \ file_def_orchidee.xml > tmp \mv -f tmp file_def_orchidee.xml sed -e 's@output_level="_AUTO_"@output_level="1"@' \ file_def_orchidee.xml > tmp \mv -f tmp file_def_orchidee.xml sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' \ file_def_orchidee.xml > tmp \mv -f tmp file_def_orchidee.xml sed -e 's@compression_level="4"@compression_level="0"@' \ file_def_orchidee.xml > tmp \mv -f tmp file_def_orchidee.xml sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' \ orchidee.def > tmp \mv -f tmp orchidee.def fi fi fi if [[ -f ../arch.env ]]; then source ../arch.env; fi echo "STARTING BENCH" date if (! $bench_cmd &> out.bench) || ! (tail -n 1 listing | grep "Everything is cool"); then tail listing echo "Bench FAILED, exiting"; exit 1 fi date tail listing fi # 1D case if [[ $SCM = 1 ]]; then cd "$MODEL" mygit 1D 1D cd 1D if [[ $rad = "oldrad" ]]; then sed -i'' -e 's/^rad=.*$/rad=oldrad/' run.sh sed -i'' -e 's/^rad=.*$/rad=oldrad/' bin/compile elif [[ $rad = ecrad ]] ; then sed -i'' -e 's/^rad=.*$/rad=ecrad/' run.sh sed -i'' -e 's/^rad=.*$/rad=ecrad/' bin/compile fi sed -i -e "s:^fcm=0:fcm=1:" bin/compile echo "Running 1D/run.sh, log in $(pwd)/run1d.log" ./run.sh &> "$(pwd)/run1d.log" fi } #----------------------------------------------------------------------------- function run_bench_icosa { #----------------------------------------------------------------------------- local bench_cmd="./bench.sh" if [[ $icolmdz = 1 ]]; then cd "$MODEL/modipsl/modeles/ICOSA_LMDZ" if [[ $bench = 1 ]]; then namebench="bench_icolmdz_nbp10_79" rm -rf $namebench myget "3DBenchs/$namebench.tar.gz" mkdir -p $namebench tar xf "$namebench.tar.gz" -C "$namebench" --strip-components=1 cd $namebench # copy executables if [[ ! -x ../bin/icosa_lmdz.exe ]]; then echo "STOP in icosa_lmdz bench, icosa_lmdz.exe executable not present"; exit 1 fi cp ../bin/icosa_lmdz.exe . if [[ ! -x ../../XIOS/bin/xios_server.exe ]]; then echo "STOP in icosa_lmdz bench, XIOS executable not present"; exit 1 fi cp ../../XIOS/bin/xios_server.exe . echo "STARTING ICOSA_LMDZ BENCH" date if (! $bench_cmd &> out.bench) || ! ( grep "Time elapsed" listing); then tail listing echo "ICOSA_LMDZ bench FAILED, exiting"; exit 1 fi date echo "ICOSA_LMDZ bench finished" fi fi } # If sourced: returns, else run setup if [[ ! "${BASH_SOURCE[0]}" = "$0" ]]; then return 0; fi echo "install_lmdz.sh DEBUT $(date)" #----------------------------------------------------------------------------- function wrapper_run_all() { #----------------------------------------------------------------------------- # This is a wrapper to catch any "unexpected" error due to set -e and avoid abrupt stoppage which may confuse the user set_default_params read_cmdline_args "$@" ensure_correct_option_combinations download_modipsl_tar get_lmdz_version get_dynamico_icosa_version get_orchidee_version init_arch check_available_software check_compiler install_netcdf install_IOIPSL install_XIOS compile_orchidee compile_lmdz # ========================================================== # AJOUT TEMPOREAIRE LE 9 FEVRIER 2025 - FH (Horrible là) # Inutile de compiler LMDZ quand pas de bench # A nettoyer apres discussion et choix sur les arch # Conservation des arch ayant servi à la compilation de LMDZ for e in "fcm" "env" "path"; do archf=$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$e archf_from_get=$local/arch/arch-$arch.$e if [ ! -f $archf ] ; then if [ -f $archf_from_get ] ; then cp $archf_from_get $archf else echo Problem with arch files ; exit 1 fi fi cp "$archf" "$MODEL/modipsl/modeles/LMDZ/arch/arch-local.$e" echo Correction d un bug : done # suppression des lignes # %CPP cpp # xios #%MAKE make # xios # qui semblent planter la compilation au moins avec LMDZ sur ricard : cd $MODEL/modipsl/modeles/LMDZ/arch for f_ in arch-local-gfortran9-parallel.fcm arch-local.fcm ; do if [ -f $f_ ] ; then sed -i'' -e '/FPP.*xios/d' -e '/MAKE.*xios/d' $f_ fi done cd - # FIN AJOUT TEMPORAIRE # ========================================================== compile_icolmdzor run_bench run_bench_icosa } set +e; (set -e && wrapper_run_all "$@"); err_status=$?; set -e # workaround to make sure set -e is propagated to wrapper_run_all & check the result if (($err_status)); then echo "EXIT (error)" echo "install_lmdz.sh failed" set +u if [[ $verbose != 1 ]]; then echo "Consider using the \`-verbose\` flag to see precisely where it stopped." fi exit 1 fi