#!/bin/bash set -eu #set -vx . lmdz_env.sh yr1=2001 yr2=2001 file_base=histmth sim_d=$PWD sim_=$( basename $sim_d ) echo $sim_ $sim_d varse="aaa pourc_ter pourc_oce pourc_lic pourc_sic bils cldt flat LWdnSFC LWdnSFCclr LWupSFC ovap precip q2m rh2m rhum sens slp SWdnSFC SWdnSFCclr SWdnTOA SWupSFC SWupSFCclr SWupTOA SWupTOAclr t2m temp topl topl0 tsol vitu vitv vitw wind10m snow pr_lsc_i pr_lsc_l geop phis prw cldl cldm cldh cldt tops tops0 sols sols0 soll soll0" varcmor="hfls hfss pr sfcWind rldscs rlds rlus rsdscs rsds rsuscs rsus rsutcs rsut rsdt rlut rlutcs sfcWind tas uas vas tasmax tasmin ts sst huss hurs tauu tauv psl zg500 hfns prw ta ua va wap hus pres hur oce ter sic lic clcalipso cltcalipso clhcalipso clmcalipso cllcalipso cll clm clh clt" varcmor="hfls hfss pr sfcWind rldscs rlds rlus rsdscs rsds rsuscs rsus rsutcs rsut rsdt rlut rlutcs sfcWind tas huss hurs" cmor=1 main_d=$root_dir # --------------------------------------------------------------------------------------------- # getting arguments # --------------------------------------------------------------------------------------------- while (($# > 0)); do case $1 in -h|--help) echo Use 1 : $0 [-cmor "var1 var2"] [-years YEAR1:YEAR2] echo Use 2 : $0 [-se "var1 var2"] [-years YEAR1:YEAR2] echo -root_dir : directory containing simulations echo -years : either 2000 or 2000:2003 echo -sim : simulation directory ;; -cmor) cmor=1 ; varcmor="$2" ; shift 2 ;; -root_dir) main_d=$2 ; shift 2 ;; -years) yr1=$( echo $2 | cut -d: -f1 ) yr2=$( echo $2 | cut -d: -f2 ) ; shift 2 ;; -se) cmor=0 ; varse="$2" ; shift 2 ;; -sim) sim_=$2 ; sim_d=$PWD/$sim_ ; shift 2 ;; *) bash seasonal_cycle.sh -h ; exit esac done echo $varcmor echo yr1 $yr1 echo yr2 $yr2 if [ ! -d $main_d ] ; then echo Directory $main_d does not exist ; exit 1 ; fi cd $sim_d declare -A varo declare -A fact # --------------------------------------------------------------------------------------------- function cmor_init { # cmor dictionary # --------------------------------------------------------------------------------------------- echo varcmor $* varse="" for var_ in $* ; do echo var_ $var_ fact[$var_]=1. case $var_ in hfls) varo[$var_]=flat ; fact[$var_]=-1. ;; hfss) varo[$var_]=sens ; fact[$var_]=-1. ;; pr) varo[$var_]=precip ; echo MEME SI MACRON ;; sfcWind) varo[$var_]=wind10m ;; rldscs) varo[$var_]=LWdnSFCclr ;; rlds) varo[$var_]=LWdnSFC ;; rlus) varo[$var_]=LWupSFC ;; rsdscs) varo[$var_]=SWdnSFCclr ;; rsds) varo[$var_]=SWdnSFC ;; rsuscs) varo[$var_]=SWupSFCclr ;; rsus) varo[$var_]=SWupSFC ;; rsutcs) varo[$var_]=SWupTOAclr ;; rsut) varo[$var_]=SWupTOA ;; rsdt) varo[$var_]=SWdnTOA ;; rlut) varo[$var_]=topl ;; rlutcs) varo[$var_]=topl0 ;; sfcWind) varo[$var_]=wind10m ;; tas) varo[$var_]=t2m ;; uas) varo[$var_]=u10m ;; vas) varo[$var_]=v10m ;; tasmax) varo[$var_]=ave_t2m_daily_max ;; tasmin) varo[$var_]=ave_t2m_daily_min ;; ts) varo[$var_]=tsol ;; sst) varo[$var_]=tsol_oce ;; huss) varo[$var_]=q2m ;; hurs) varo[$var_]=rh2m ;; tauu) varo[$var_]=taux_oce ;; tauv) varo[$var_]=tauy_oce ;; psl) varo[$var_]=slp ; fact[$var_]=0.01 ;; zg500) varo[$var_]=z500 ;; hfns) varo[$var_]=bils ;; prw) varo[$var_]=prw ;; ta) varo[$var_]=temp ;; ta200) varo[$var_]=t200 ;; ta500) varo[$var_]=t500 ;; ta850) varo[$var_]=t850 ;; ua) varo[$var_]=vitu ;; va) varo[$var_]=vitv ;; wap) varo[$var_]=vitw ;; hus) varo[$var_]=ovap ;; pres) varo[$var_]=pres ;; hur) varo[$var_]=rhum ; fact[$var_]=100. ;; oce) varo[$var_]=pourc_oce ; fact[$var_]=0.01 ;; ter) varo[$var_]=pourc_ter ; fact[$var_]=0.01 ;; sic) varo[$var_]=pourc_sic ; fact[$var_]=0.01 ;; lic) varo[$var_]=pourc_lic ; fact[$var_]=0.01 ;; clcalipso) varo[$var_]=clcalipso ; fact[$var_]=100. ;; cltcalipso) varo[$var_]=cltcalipso ; fact[$var_]=100. ;; clhcalipso) varo[$var_]=clhcalipso ; fact[$var_]=100. ;; clmcalipso) varo[$var_]=clmcalipso ; fact[$var_]=100. ;; cllcalipso) varo[$var_]=cllcalipso ; fact[$var_]=100. ;; cll) varo[$var_]=cldl ; fact[$var_]=100. ;; clm) varo[$var_]=cldm ; fact[$var_]=100. ;; clh) varo[$var_]=cldh ; fact[$var_]=100. ;; clt) varo[$var_]=cldt ; fact[$var_]=100. ;; *) varo[$var_]=$var_ esac echo APRES var ${varo[$var_]} varse="$varse ${varo[$var_]}" done } # ----------------------------------------------------------------------- if [ $cmor = 1 ] ; then cmor_init $varcmor ; fi echo varse $varse # Liste des fichiers disponibles entre les annees yr1 et yr2 # ---------------------------------------------------------- echo $yr1 $yr2 #echo $( echo $yr1 | wc -c ) if [ $( echo $yr1 | wc -c ) -ge 6 ] ; then if [ $yr2 != $yr1 ] ; then echo Not possible to run with monthly files on more than one month so far ; exit 1 fi fi files=$( for yr in $( seq $yr1 $yr2 ) ; do ls $file_base.${yr}*.nc ; done ) echo Liste des fichiers traites : $files # Construction de la liste des variables disponibles # -------------------------------------------------- var_list_o=$varse for file_ in $files ; do # Recuperation de la liste des variables dans le fichier #ncdump -h $file_ | grep long_name | cut -d: -f1 var_list_=$( ncdump -h $file_ | grep long_name | cut -d: -f1 ) # Liste des variables contenues soit dans le fichier soit dans $var_list_o var_list_n=$( ( for var in $var_list_o $var_list_ ; do echo $var ; done ) | sort | uniq -i -d ) # Liste des suprimees echo Liste des variables non disponibles dans $file_ : $( ( for var in $var_list_o $var_list_n ; do echo $var ; done ) | sort | uniq -i -u ) var_list_o=$var_list_n done echo Liste des variables traitees : $var_list_o vars="-selvar" ; for var_ in $var_list_n ; do vars="$vars,$var_" ; done # -------------------------------------------------------------------- # Extracting variables in the original individual files # -------------------------------------------------------------------- for file_ in $files ; do # Extraction des variables tmpf=tmp.$file_ \rm -f $tmpf cdo $vars $file_ $tmpf # Correction calendrier à 360d. Corrige depuis 2017 cal=`ncdump -h $tmpf | grep time_counter | grep calendar | cut -d\" -f2` if [ "$cal" = "360d" ] ; then ncatted -a calendar,"time_counter",o,c,"360_day" -O $tmpf ; fi done # -------------------------------------------------------------------- # Merging files & extracting the mean seasonal cycle of required variables # -------------------------------------------------------------------- if [ $cmor = 1 ] ; then se_d=$main_d/CMOR/${sim_}_${yr1}_${yr2} else se_d=$main_d/SE fi mkdir -p $se_d file_se=$se_d/${file_base}.${yr1}-${yr2}.nc \rm -rf $se_d/$file_se cdo ymonmean -mergetime $( for f_ in $files ; do echo tmp.$f_ ; done ) $file_se # -------------------------------------------------------------------- # From histmth to cmor # -------------------------------------------------------------------- echo varcmor $varcmor if [ $cmor = 1 ] ; then for var_ in $varcmor ; do varo_=${varo[$var_]} fact_=${fact[$var_]} set +e # Checking variable availability cdo info -selvar,$varo_ $file_se > /dev/null 2>&1 status_=$? set -e if [ $status_ != 0 ] ; then echo variable $varo_ non disponible dans le fichier $file_se else echo var_ existe $var_ if [ $fact_ = 1. ]; then if [ $var_ == ta ] || [ $var_ == ua ] || [ $var_ == va ] || [ $var_ == wap ] || [ $var_ == hus ] || [ $var_ == hur ]; then opt="selvar,$varo_,pres" else opt="selvar,$varo_" fi else opt="mulc,$fact_ -selvar,$varo_" fi outfile=$se_d/$var_.nc ; \rm -f $outfile cdo $opt $file_se $outfile if [ $var_ != $varo_ ]; then ncrename -v $varo_,$var_ ${outfile} fi fi done \rm -f $file_se fi