#!/bin/bash
source ~/env_Multi_atlas.sh
#A REFAIRE
local=`pwd -P`
if [ 1 == 0 ]; then
login=`whoami`
hostname=`hostname`
if [ ${hostname:0:5} = cicla ] ; then
DODSDIR=/thredds/ipsl
dthredds=thredds-su.ipsl.fr/thredds/fileServer/ipsl_thredds
HTML00=https://${dthredds}/$login
machine=ciclad
fi
if [ ${hostname:0:5} = spiri ] ; then
DODSDIR=/thredds/ipsl
dthredds=thredds-su.ipsl.fr/thredds/fileServer/ipsl_thredds
HTML00=https://${dthredds}/$login
machine=spirit
fi
if [ ${hostname:0:5} = camel ] ; then
DODSDIR=/thredds/ipsl
fi
if [ ${hostname:0:5} = irene ] ; then
DODSDIR=
fi
if [ ${hostname:0:5} = jean- ] ; then
DODSDIR=
fi
fi
runstxt=$local/runs.txt
PREF_F=$DODSDIR
dthredds=thredds-su.ipsl.fr/thredds/fileServer/ipsl_thredds
#PREF_W=http\://vesg.ipsl.upmc.fr/thredds/fileServer/IPSLFS
PREF_W=http\://${dthredds}
MULTIDIR=$PREF_F/$login/lmdz/MultiSimu
#BASE_D=/home/fabric/users/dcugnet
BASE_D=$local/LMA
OUT_D=/prodigfs/$login/LMDZ6/AXE2/LMA_LMDZ
#TS_DA=$PREF_F/fabric/lmdz/TS_DA
#=== CHECK WETHER REQUIRED ARGUMENT HAS IS PRESENT
if [ $# -ne 1 ]; then
echo "This script needs a single argument: the comparison name"
echo " (the name of the folder containing the def.txt file)"
exit
fi
comp=$1
#=== CHECK WETHER GIVEN ARGUMENT IS VALID
COMP_D=$MULTIDIR/$comp
if [ ! -f $COMP_D/def.txt ]; then
echo "Nonexisting comparison file $COMP_D/def.txt"; exit
fi
#=== SOME MORE PATHS/FILES
AXE_D=$COMP_D/AXE2; if [ ! -d $AXE_D/AXE2 ]; then mkdir -p $AXE_D/AXE2; fi
FIG_D=$AXE_D/METRICS #--- FIGURES STORAGE PATH
headf=$COMP_D/entete.html #--- HTML PAGES HEADER
compf=$COMP_D/lma2.html #--- GENERATED HTML PAGE
if [ ! -d $FIG_D ]; then mkdir -p $FIG_D; fi
AXE_W=$(echo $AXE_D | sed -e "s%$PREF_F%$PREF_W%")
FIG_W=$(echo $FIG_D | sed -e "s%$PREF_F%$PREF_W%")
webf=$AXE_W/lma.html
PLOT_D=$BASE_D/LMA_LMDZ/$comp
#=== GENERATE THE pdf FILES ; CONVERT THEM INTO png FILES
cd $PLOT_D
./plot_lma.bash
for f in `ls *.pdf`; do convert -density 600 $f -resample 600 $FIG_D/${f%.*}.png; done
cd - 1> /dev/null
#=== BUILD THE HTML PAGE
boxes=($(ls $FIG_D/boxes_*.png))
modes=($(ls $FIG_D/modes_*.png))
cat $headf > $compf
echo " " >> $compf
echo "
Local Modes Analysis (LMA)
" >> $compf
echo " " >> $compf
echo "
" >> $compf
echo "
" >> $compf
for i in $(eval echo {1..${#boxes[@]}}); do
box=${boxes[$((i-1))]}; mod=${modes[$((i-1))]}
echo "
" >> $compf
echo "
" >> $compf
done
echo "
" >> $compf
echo $compf | sed -e "s%$PREF_F%$PREF_W%"