Changeset 5046 for BOL

Timestamp:

Jul 11, 2024, 12:52:31 PM (5 months ago)

Author:

abarral

Message:

fix Adastra env

File:

• BOL/LMDZ_Setup_amaury/lmdz_env.sh (modified) (2 diffs)

BOL/LMDZ_Setup_amaury/lmdz_env.sh

@@ -72 +72 @@
     adast)
       module purge
-      module load PrgEnv-gnu
-      module load gcc/13.2.0  # required, see https://dci.dci-gitlab.cines.fr/webextranet/user_support/index.html#prgenv-and-compilers
+      module load PrgEnv-gnu  # we need to load the env because lmdz links some shared libraries
+      module load gcc/12.1.0  # required, see https://dci.dci-gitlab.cines.fr/webextranet/user_support/index.html#prgenv-and-compilers
 
       function cdo {  # cdo is available as a spack cmd which requires a specific, incompatible env
         unset cdo
         module purge
-        module load GCC-CPU-3.1.0
-        /opt/software/gaia-external/CPU/cdo-2.4.0/__spack_path_placeholder__/__spack_path_placeholder__/__spack_path_placeholder__/__spa/cdo-2.4.0-gcc-12.1-b3qr/bin/cdo "$@"
+        module use /opt/software/gaia/branches/530/latest/Core
+        module load GCC-CPU-4.0.0
+        module load cdo/2.4.2-mpi
+        cdo "$@"
         set_env
       }
@@ -103 +105 @@
       N_HYPERTHREADING=2
       MPICMD="srun -n"
-      RUNBASHCMD="srun --label --account=$account --constraint=GENOA --ntasks-per-node=1 -n 1 --time=00:15:00 -c"
-      SUBMITCMD="env $(env | grep -E "SLURM_|SBATCH_|SRUN_" | cut -d= -f1 | awk '{print "-u " $0}') sbatch --constraint=GENOA --account=$account"  # we need to remove the existing SLURM variables otherwise they lay be unexpectedly inherited by the submitted script
+#      RUNBASHCMD="srun --label --account=$account --constraint=GENOA --ntasks-per-node=1 -n 1 --time=00:15:00 -c"
+      RUNBASHCMD="bash"  # On Adastra the docs says we can use login nodes for compilation
+      SUBMITCMD="env $(env | grep -E "SLURM_|SBATCH_|SRUN_" | cut -d= -f1 | awk '{print "-u " $0}' | tr '\n' ' ' ) sbatch --constraint=GENOA --account=$account"  # we need to remove the existing SLURM variables otherwise they lay be unexpectedly inherited by the submitted script
       ;;
     *) echo "WARNING: RUNNING THIS SCRIPT ON A LOCAL COMPUTER IS DISCOURAGED (lackluster cpus and memory)"