Index: BOL/Scripts_ce0l/SST_SIC_ERA/mk_prepa_daily-SST-SIC_ERA.sh
===================================================================
--- BOL/Scripts_ce0l/SST_SIC_ERA/mk_prepa_daily-SST-SIC_ERA.sh	(revision 4907)
+++ BOL/Scripts_ce0l/SST_SIC_ERA/mk_prepa_daily-SST-SIC_ERA.sh	(revision 4907)
@@ -0,0 +1,178 @@
+#!/bin/bash 
+
+echo
+echo This bash script gets the SSTs and SICc from
+echo hourly ERA5 data and prepares the input files
+echo containing daily values that should be used to 
+echo create limit.nc boundary file for LMDZ.
+echo 
+echo The SST field contains sstk over ocean and skt over land.
+echo The SIC files contain either siconc field for the 
+echo period 1979-2007 or ci field for the 2008-2017 period.
+echo See below !!!
+echo 
+echo This script was tested on spirit2 machine.
+echo 
+echo To execute this script you need to give the year as input 
+echo ./mk_prepa_daily-SST-SIC_ERA.sh $yr 
+echo
+echo For exemple for 2020 year :
+echo ./mk_prepa_daily-SST-SIC_ERA.sh 2020
+echo
+echo Ionela Musat, 12/03/2024
+echo
+
+module load ferret
+
+local=`pwd`
+
+yr=$1
+
+data=ERA5
+res=GLOBAL_025
+ret=hourly
+dtype=AN_SF
+suff=as1e5
+
+echo din is the input directory containing ERA5 daily data 
+echo for $yr year
+###din=/bdd/ERA5/NETCDF/GLOBAL_025/hourly/AN_SF/${yr}
+din=/bdd/${data}/NETCDF/${res}/${ret}/${dtype}/${yr}
+
+MONTHS="01 02 03 04 05 06 07 08 09 10 11 12"
+
+for mth in $MONTHS; do
+
+if [ "${mth}" == "02" ]; then
+### ndays=`mk_an_bissextile.sh ${yr}`
+
+echo
+echo Check if the year is a leap one or not
+echo
+echo A leap year is a year which is a multiple of 4,
+echo except for years evenly divisible by 100, but not by 400.
+echo
+let " yrs4 = ${yr} / 4"
+let " yrs100 = ${yr} / 100"
+let " yrs400 = ${yr} / 400"
+
+let "yrd4 = ${yrs4} *4 "
+let "yrd100 = ${yrs100} *100 "
+let "yrd400 = ${yrs400} *400 "
+
+ndays=28
+if [ ${yr} == ${yrd400} ]; then
+ndays=29
+elif [ ${yr} == ${yrd100} ]; then
+ndays=28
+elif [ ${yr} == ${yrd4} ]; then
+ndays=29
+fi
+
+if [ "${ndays}" == "29" ]; then
+ echo $yr is a leap year
+else
+ echo $yr is a noleap year
+fi
+
+fi
+
+case $mth in 
+             01|03|05|07|08|10|12) ndays=31 ;;
+             04|06|09|11) ndays=30 ;;
+esac
+
+var=skt
+cp ${din}/${var}.${yr}${mth}.${suff}.${res}.nc .
+cdo daymean ${var}.${yr}${mth}.${suff}.${res}.nc ${var}_daily.${yr}${mth}.${res}.nc
+chmod u+w ${var}.${yr}${mth}.${suff}.${res}.nc
+\rm ${var}.${yr}${mth}.${suff}.${res}.nc 
+
+var=sstk
+cp ${din}/${yr}/${var}.${yr}${mth}.${suff}.${res}.nc .
+cdo daymean ${var}.${yr}${mth}.${suff}.${res}.nc ${var}_daily.${yr}${mth}.${res}.nc
+chmod u+w ${var}.${yr}${mth}.${suff}.${res}.nc
+\rm ${var}.${yr}${mth}.${suff}.${res}.nc 
+
+if [ -f tmp.ps ]; then
+\rm tmp.ps
+fi
+
+cat<<eof>go_sstk_stk.jnl
+cancel data/all
+cancel view
+
+use "skt_daily.$1.$3.nc"
+use "sstk_daily.$1.$3.nc"
+
+let sst = if sstk[d=2] then sstk[d=2] else skt[d=1]
+shade sst[l=1]-skt[d=1,l=1]; go land
+
+save/file=sst_$4.$1.nc sst[l=1]
+repeat/l=2:$2 (save/append/file=sst_$4.$1.nc sst[l=`l`])
+quit
+
+eof
+
+ferret -batch tmp.ps -script go_sstk_stk.jnl ${yr}${mth} ${ndays} ${res} ${data}
+
+echo mth $mth ndays ${ndays}
+
+done
+
+varnew=sst
+cdo cat ${varnew}_${data}.${yr}*.nc ${varnew}_daily_${data}.${yr}.nc
+
+echo
+echo Change dimensions and SST variable names and add the K unit.
+echo This are mandatory for using the SSTs/SICs files as input files to the
+echo create_eta0_limit.F90 main code.
+echo 
+var=sst
+varM=SST
+varnew=tosbcs
+fin=${var}_daily_${data}.${yr}.nc
+fout=${varnew}_daily_${data}.${yr}.nc
+ncrename -v LONGITUDE,longitude -d LONGITUDE,longitude ${fin}
+ncrename -v LATITUDE,latitude -d LATITUDE,latitude ${fin}
+ncrename -v TIME,time -d TIME,time ${fin}
+ncrename -v ${varM},${varnew} ${fin}
+ncatted -a units,${varnew},a,c,"K" ${fin}
+mv ${fin} ${fout}
+
+echo 
+echo Get SICs field : files named "ci" are containing the siconc or ci variable 
+echo corresponding to sea-ice in 0-1 unit
+echo
+var=ci
+for mth in $MONTHS; do
+
+cp ${din}/${var}.${yr}${mth}.${suff}.${res}.nc .
+cdo daymean ${var}.${yr}${mth}.${suff}.${res}.nc ${var}_daily.${yr}${mth}.${res}.nc
+chmod u+w ${var}.${yr}${mth}.${suff}.${res}.nc
+\rm ${var}.${yr}${mth}.${suff}.${res}.nc
+
+done
+
+cdo cat ${var}_daily.${yr}*.${res}.nc ${var}_daily_${data}.${yr}.nc
+
+echo
+echo Rename siconc or ci variable as sicbcs, multiply it by 100 and change unit
+echo
+if [ $yr -ge 2008 ] && [ $yr -le 2017 ]; then
+varname=ci
+else
+varname=siconc
+fi
+
+fin=${var}_daily_${data}.${yr}.nc
+varnew=sicbcs
+mulc=100.
+fout=${varnew}_daily_${data}.${yr}.nc
+cdo mulc,$mulc ${fin} ${fout}
+ncrename -v ${varname},${varnew} ${fout}
+ncatted -a units,${varnew},o,c,"%" ${fout}
+
+\rm ci*nc sst*nc skt*nc
+
+exit