Index: /BOL/script_install_amaury/Install_PC_Ubuntu22_Howto =================================================================== --- /BOL/script_install_amaury/Install_PC_Ubuntu22_Howto (revision 4850) +++ /BOL/script_install_amaury/Install_PC_Ubuntu22_Howto (revision 4850) @@ -0,0 +1,58 @@ +Récapitulatif de l'installation d'un PC pour pouvoir travailler confortablement +avec LMDZ. + +Installation ubuntu 22, Howto +============================= +récupérer une image iso +puis exécuter usb-creator-gtk pour créer une clé live usb + + +Installation des paquets pour LMDZ +================================== +lancer le script +http://lmdz.lmd.jussieu.fr/pub/script_install/install_ubuntu22_packages.sh +qui va installer tous les pacquets nécessaires et aussi pas mal de +bureautique et paquets graphiques. +Seule subtilité : l'installation d'acroread, non distribuée en standard. + + +Installation d'un espace de travail en matrice +============================================== +(optionnel) +Pour cela, il faut commencer par une désinstallation/réinstallation +des versions firefox (snap/apt). +Cette dernière étape est nécessaire pour activer une matrice de bureaux +sous gnome. C'est un peu subtile et optionnel. +script : +http://lmdz.lmd.jussieu.fr/pub/env/install_workspace_matrix.sh + + +Installation conda/ferret +========================= +Installation de miniconda et de ferret par miniconda. +A cause de problèmes sur certains PCs, il faut activer un pyferret de 202003. +En plus, avec le conda récent qui utilise par défaut phython3.9, +il faut lui préciser que c'est python=3.7 qu'il faut utiliser. +Le script inclus l'installation de basemap, qu'Etienne utilise pour les +mini projets LMDZ du cours de M2 de modélisation. +script : +http://lmdz.lmd.jussieu.fr/pub/env/install_conda_ferret.sh + + +LMDZ +==== +testé avec succès la version 20221028.trunk +* une installation install_lmdz.sh séquentielle avec -SCM +* une installation parallèle en récupérant directement + http://lmdz.lmd.jussieu.fr/pub/Training/tutorial.tar + sur ~/ +Un seul souci via tutorial : +dans ecrad lié à la version récente de gfortran sur la ubuntu22. +la ligne +random_numbers_mix.F90: INTEGER(KIND=JPIM), PARAMETER :: IVAR=Z"3FFFFFFF" +ne compile pas. +Corriger d'ici la formation + +à vous, + +Frédéric Index: /BOL/script_install_amaury/Readme.md =================================================================== --- /BOL/script_install_amaury/Readme.md (revision 4850) +++ /BOL/script_install_amaury/Readme.md (revision 4850) @@ -0,0 +1,15 @@ +** Le répertoire `~lmdz/pub/script_install` ** + +est maintenant un le résultat de +``` +svn checkout https://svn.lmd.jussieu.fr/LMDZ/BOL/script_install +``` + +Il contient : +- le script d'installation lmdz : `install_lmdz.sh` +- les scripts d'installation netcdf, `install_netcdf4_hdf5.bash` `install_netcdf4_hdf5_seq.bash` (utilisés par `install_lmdz.sh`) +- les scripts et fichier Howto d'installation des ordinateurs portables sous ubuntu : `install_ubuntu22_packages.sh`, `install_conda_ferret.sh`, `Install_PC_Ubuntu22_Howto` +- les scripts de creation et de tests des archives .tar de LMDZ, `check_version.sh` `creation_modipsl.sh` (expert) + +A faire : +Les deux scripts d'installation `netcdf` devraient/pourraient être fusionés. Index: /BOL/script_install_amaury/check_version.sh =================================================================== --- /BOL/script_install_amaury/check_version.sh (revision 4850) +++ /BOL/script_install_amaury/check_version.sh (revision 4850) @@ -0,0 +1,443 @@ +#!/bin/bash +# $Id$ + +#set -vx + +# AFAIRE +# On pourrait gerer le justcheck en creant un repertoire +# avec +# if recheck +# resubench=./RESUBENCH$$ +# else +# resubench=$RESU_D/$datelmdz$rel_svn +#On pourrait ainsi utiliser une fonction independante qui genere les messages +# comme check_version_message + + + +######################################################################### +# Verification de a convergence du modele par rapport aux versions +# precedentes +# + 1+1=2 +######################################################################### + +version_ref=latest +resolution=48x36x39 +compilo=gfortran +parallel=mpi_omp +# Option pour le debug du script check_version lui meme qui consiste a ne +# pars reexecuter l'installation et les simulations mais a simplement +# refaire les diff sur des simulations existantes. +justcheck=0 # just compare results not writing of results in RESUBENCH +tmpdir=/tmp/`whoami` ; mkdir -p $tmpdir +tmpdir=/home/lmdz/tmp +rel_svn="" +local_d=`pwd` + +install=1 +rad=rrtm +check_1D=1 +check_SP=1 +check_1p1=1 +check_Debug=1 +check_isotopes=1 +check_parallel=1 +check_compile=1 +check_ini=1 +mail_address=lmdz-commit@listes.lmd.ipsl.fr +MODEL="" +branche=trunk + +######################################################################### +# Pour aller chercher des fichiers par wget si pas sur le cpte lmdz +######################################################################### + +if [ `whoami` = lmdz ] ; then + get="ln -sf /u/lmdz/WWW" +else + get="wget https://www.lmd.jussieu.fr/~lmdz" +fi + +######################################################################### +# Options du script +######################################################################### + +while (($# > 0)) + do + case $1 in + "-h") cat < out.bench 2>&1 + + +if [ -f restartphy.nc ] ; then + if [ ! -f gcm.install ] ; then \cp -f gcm.e gcm.install ; fi + +######################################################################### +echo 3. Verification de la convergence avec la version precedente +echo Physique Standard +######################################################################### + + # Faite soit sur les restart.nc soit sur une exctraction de ps.nc + # Il est arrive qu'on ait convergence meteo sans identite des restart + # (pb d'entete, de traceurs ...) + # Aide a l'interpretation de resultats problematiques + # Les resultats de la simu ancienne physique sont directement + # dans BENC* + # Les resultats de la nouvelle physique sont dans SIM1 utilise + # pour 1+1=2 + # Les resultats de la simulation debug sont dans SIMD + + # Ici on se contente d'analyser le bench automatique qui vient de tourner + if [ $justcheck = 0 ] ; then mkdir -p $resubench/$BENCH; fi + if [ -f restartphy.nc ] ; then + if [ $justcheck = 0 ] ; then + ncks -M -m -h -v ps -O restart.nc $resubench/$BENCH/ps.nc + cp restart.nc $resubench/$BENCH/restart.nc + fi + cmp -s ./restart.nc $latest/$BENCH/restart.nc + if [ $? = 0 ] ; then converge=S ; else converge=s ; fi + else + converge=- + fi + + ######################################################################### + echo 4. Verification de 1+1=2 + echo Avec la nouvelle physique + ######################################################################### + # On utilse l'executable du bench de base + + if [ $check_1p1 = 1 ] ; then + \cp -f gcm.install gcm.e + suf=NPv6.0.14splith + sed -e 's/VEGET=y/VEGET=n/' config.def_oraer > config.def + if [ -f physiq.def_$suf ] ; then \cp -f physiq.def_$suf physiq.def ; fi + $get/Distrib/unpun.sh + chmod +x unpun.sh ; ./unpun.sh -parallel $parallel + cmp -s SIM2/ps_end.nc SIM1+1/ps_end.nc + if [ $? = 0 ] ; then + unpun=OK + else + unpun=- + fi + fi + + +# 2016/06/21 : comparaison des versions nouvelles physique (dans SIM1) + cd $LMDZdir/$BENCH + if [ -f SIM1/restartphy.nc ] ; then + if [ $justcheck = 0 ] ; then + ncks -M -m -h -v ps -O SIM1/restart.nc $resubench/$BENCH/ps$suf.nc + cp SIM1/restart.nc $resubench/$BENCH/restart$suf.nc + fi + \rm sechiba_out_2.nc sechiba_history.nc sechiba_rest_out.nc + cmp -s SIM1/restart.nc $latest/$BENCH/restart$suf.nc + if [ $? = 0 ] ; then convergeNP=N ; else convergeNP=n ; fi + else + convergeNP=- + fi + + ######################################################################### + echo Verification en mode debug + parallele, compile avec makelmdz + ######################################################################### + + cd $LMDZdir/$BENCH + if [ -f compilegcm.sh -a $check_compile = 1 ] ; then + \rm -f gcm.e + ./compilegcm.sh -debug + mkdir SIMD + cd SIMD + ln -s ../SIM1/start* ../SIM1/limit* ../SIM1/sechiba_rest_in.nc ../SIM1/aer*nc ../SIM1/*def . + ../run_local.sh 2 2 ../gcm.e > listing 2>&1 + cd ../ + suf=D + if [ -f SIMD/restartphy.nc ] ; then + if [ $justcheck = 0 ] ; then + ncks -M -m -h -v ps -O SIMD/restart.nc $resubench/$BENCH/ps$suf.nc + cp SIMD/restart.nc $resubench/$BENCH/restart$suf.nc + fi + cmp -s SIMD/restart.nc $latest/$BENCH/restart$suf.nc + if [ $? = 0 ] ; then convergeD=D ; else convergeD=d ; fi + else + convergeD=- + fi + fi + + ######################################################################### + echo Test en fonction du nombre de processeurs + ######################################################################### + +echo CHECK $parallel $check_parallel + if [ "$parallel" = "mpi_omp" -a $check_parallel = 1 ] ; then + mkdir -p $LMDZdir/$BENCH/SIM1_41 + cd $LMDZdir/$BENCH/SIM1_41 + ln -s ../SIM1/start* ../SIM1/limit* ../SIM1/sechiba_rest_in.nc ../SIM1/aer*nc ../SIM1/*def . + ../run_local.sh 4 1 ../gcm.e > listing + cd .. + echo ON EST AVANT LE CMP + cmp -s SIMD/restart.nc SIM1_41/restart.nc + if [ $? = 0 ] ; then + if [ "$unpun" = "OK" ] ; then + unpun=OK2 + else + unpun=-OK + fi + else + unpun=${unpun}- + fi + fi + + ######################################################################### + echo Verification des isotopes + ######################################################################### + + if [ $check_isotopes = 1 ] ; then + cd $LMDZdir + pwd + $get/pub/3DBenchs/bench_lmdz_iso_48x36x39.tar.gz + tar xvf bench_lmdz_iso_48x36x39.tar.gz + cd BENCHiso48x36x39 + ./compile.sh + exec=../bin/gcm_48x36x39_phylmdiso_${rad}_seq_iso_isoverif.e + if [ -f $exec ] ; then + $exec > listing 2>&1 + suf=I + if [ -f restartphy.nc ] ; then + if [ $justcheck = 0 ] ; then + cp restart.nc $resubench/$BENCH/restart$suf.nc + fi + cmp -s restart.nc $latest/$BENCH/restart$suf.nc + if [ $? = 0 ] ; then convergeI=I ; else convergeI=i ; fi + else + # compiled but failed the isoverif test + convergeI=x + fi + else + # compilation failed; cleaning up for next compilation + convergeI=- + \rm -f libf/grid/dimensions.h + \rm -f .lock + fi + fi + + ######################################################################### + echo Verification de initialisation + ######################################################################### + + if [ $check_ini = 1 ] ; then + cd $LMDZdir + rm -rf INIT + mkdir INIT + cp $BENCH/*def INIT + cd INIT + pwd + $get/Distrib/initialisation.sh + sed -e 's/grid_resolution=48x36x39/grid_resolution='$resolution'/' initialisation.sh > ini.sh + chmod +x ini.sh ; ./ini.sh + if [ -f limit.nc ] ; then + var=Tsoil01srf01 + if [ $justcheck = 0 ] ; then + mkdir -p $resubench/START$resolution + ncks -M -m -h -v $var startphy.nc -O $resubench/START$resolution/$var.nc + cp startphy.nc $resubench/START$resolution/ + fi + cmp -s startphy.nc $latest/START$resolution/startphy.nc + if [ $? = 0 ] ; then + init=OK + else + init=noc + fi + else + init=- + fi + fi + + ######################################################################## + echo end of test cases + ######################################################################## + bench=OK +else + echo PROBLEME : LE BENCH N EST PAS ALLE AU BOUT + bench=- +fi + +if [ $justcheck = 0 ] ; then + latest=$RESU_D/latest + \rm -f $latest + ln -sf $resubench $latest +fi + + +cd $LMDZdir/.. +LMDZ=`\ls -d LMD*` #Nom du modele LMDZ sur modeles/ : LMDZ4, LMDZ5, LMDZ + +svn upgrade # Il faut mettre à jour le svn si la version sur + # laquelle le checkout a ete fait est plus ancienne + # ce qu'on souhaite par ailleurs pour pouvoir ensuite + # commettre depuis une version ancienne de svn (comme celles + # des SL du réseau local +svnrel=`svn info $LMDZ | grep 'Changed Rev' | head -1 | awk ' { print $4 } '` +#FH 20160822 +if [ "$svnrel" = "" ] ; then + svnrel=`svn info $LMDZ | grep vision | head -1 | awk ' { print $2 } '` +fi + +ccc=$converge$convergeNP$convergeD$converge1D$convergeI +if [ "$ccc" = "SNDUI" ] ; then ccc="OK " ; fi + + + +######################################################################## +# Ectiture du message de bilan +######################################################################## + +cd $local_d + +echo $version' '$svnrel' '$bench' '$ccc ' '$unpun' '$init' (ref:' $comparea ')' > tmp.resu +cat > tmp.message <> tmp.message +cat >> tmp.message < SNDUI +eod + +cat tmp.message + +if [ $mail_address != "" ] && [ $justcheck = 0 ] ; then + ssh lmdz@django "mail -s 'Nouvelle version pour install_lmdz.sh' $mail_address < "$local_d"/tmp.message" +# ssh lmdz@lmdz-forge "mail -s 'Nouvelle version pour install_lmdz.sh' $mail_address < "$local_d"/tmp.message" +fi + +# +# clean up of /tmp/lmdz if everything went smoothly +# +grep -q 'OK OK OK2 OK' tmp.resu +RET=$? +if [ ${RET} -eq 0 ] ; then + echo "Quality control checks out for version $version" + echo "We cleanup $tmpdir/LMDZ$version" + echo "\rm -rf $tmpdir/LMDZ$version" + \rm -rf $tmpdir/LMDZ$version +fi + Index: /BOL/script_install_amaury/creation_modipsl.sh =================================================================== --- /BOL/script_install_amaury/creation_modipsl.sh (revision 4850) +++ /BOL/script_install_amaury/creation_modipsl.sh (revision 4850) @@ -0,0 +1,227 @@ +#!/bin/bash + +#set -vx +unset LANG + +##################################################################### +# Choix eventuel de la version : branche ou trunk et svn particuliere +# Le script est lancé tous les soirs par un script sur lmdz-cq par lmdz +# On peut aussi le relancé depuis la même machine en interactif +# si le trusting de la nuit a échoué, soit que la raison soit extérieure +# au modèle, soit qu'on fasse une correction svn entre temps : +# ./creation_modipsl.sh -force -latest 20221004 +# où la dernière version ayant marché est 20221004.trunk +##################################################################### + +branche=IPSLCM6.0.15 +branche=trunk +rev="-r 4370" +rev="" +latest="" +latest="20230902" +latest="20231102" +latest="20231215" +#latest=20210512 # Pour imposer de tester la convergence avec une version passee + +TMP_D=/tmp/lmdz ; mkdir -p $TMP_D + +if [ $branche != trunk ] ; then + echo cas non prevu +# exit +fi + +check=0 +check=1 # On verifie un certain nombre de choses. +force=0 + +optionnel=" -cpp ORCHIDEE_NOZ0H " + +local=`pwd` +while (($# > 0)) ; do + case $1 in + "-h") cat < 1OOO, nb_zax_max : 5 -> 100, flio_max_dims : 15 -> 50 pour rebuild cosp +vorig=v15 # modifications pour tenir compte de jean-zay nouvelle machine Idris +vorig=v16 # 2022/02/17 on bascule sur orchidee CMIP6 +vorig=v18 # 2023/03/09 modification ORCHIDEE pour compatibilité IOIPSL: on rajoute 360_day comme attribut +vorig=v19 # 2023/03/10 IOIPSL updated to version 2.2.5 + +modipsltar=modipsl.$vorig.tar + +##### tmpdir=/tmp/tmpmodipsl$$ +tmpdir=$local/tmpmodipsl$$ +mkdir -p $tmpdir +cd $tmpdir +if [ -f /u/lmdz/WWW/Distrib/$modipsltar.gz ] ; then + cp /u/lmdz/WWW/Distrib/$modipsltar.gz . +else + wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$modipsltar.gz +fi + +tar xvf $modipsltar.gz +#gzip -9 $modipsltar + +readme_file=Readme_LMDZ$version.md + +cat > $readme_file <> ../../$readme_file +echo '``' >> ../../$readme_file + +########################################################################### + +cd - +echo $version +tar cvf modipsl.$version.tar modipsl $readme_file + +gzip modipsl.$version.tar +mv modipsl.$version.tar.gz ~/WWW/Distrib + +cd ~/WWW/Distrib +ln -sf modipsl.$version.tar.gz modipsl.$branche.tar.gz +cd ~/WWW/pub/src_archives/unstable/ + +# Ajout pour la nouvelle arborescence +ln -sf ../../../Distrib/modipsl.$version.tar.gz . +ln -sf modipsl.$version.tar.gz modipsl.$branche.tar.gz +cd ~/WWW/Distrib + + +#################################################################### +# La partie ci-dessous concerne le check des versions. +# On devrait sans doute appeler rechech.sh +#################################################################### + +if [ $check = 1 ] ; then + ./check_version.sh $version >| WORK/check.out.$version 2>&1 + cat tmp.resu >> Correspondance + cat tmp.resu >> LISMOI.$branche + \cp -f LISMOI.trunk ../pub/src_archives/Readme +### +### clean up of /tmp/lmdz if everything went smoothly +### +grep -q 'OK OK OK2 OK' tmp.resu +RET=$? + if [ ${RET} -eq 0 ] ; then + echo "Quality control checks out for version $version" + echo "We could cleanup /tmp/lmdz/LMDZ$version" + echo "\rm -rf /tmp/lmdz/LMDZ$version" + \rm -rf /tmp/lmdz/LMDZ$version + fi +fi Index: /BOL/script_install_amaury/install_conda_ferret.sh =================================================================== --- /BOL/script_install_amaury/install_conda_ferret.sh (revision 4850) +++ /BOL/script_install_amaury/install_conda_ferret.sh (revision 4850) @@ -0,0 +1,50 @@ +#!/bin/bash + +cat < 0)) +do + case $1 in + "-h") cat <<........fin + $0 [ -v version ] [ -r svn_release ] + [ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ] + [-name LOCAL_MODEL_NAME] [-gprof] [-opt_makelmdz] [-rad RADIATIF] + + -v "version" like 20150828.trunk + see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk + + -r "svn_release" : either the svn release number or "last" + + -compiler gfortran|ifort|pgf90 (default: gfortran) + + -parallel PARA : can be mpi_omp (mpi with openMP) or none (for sequential) + + -d GRID_RESOLUTION should be among the available benchs if -bench 1 + among which : 48x36x19, 48x36x39 + if wanting to run a bench simulation in addition to compilation + default : 48x36x19 + + -bench activating the bench or not (0/1). Default 1 + + -testing/unstable + + -name LOCAL_MODEL_NAME : default = LMDZversion.release + + -netcdf 0, 1 or PATH + 0: do not download NetCDF, look for it in standard locations + 1: download and compile NetCDF + PATH: full path to an existing installed NetCDF library + + -xios also download and compile the XIOS library + (requires the NetCDF4-HDF5 library, also installed by default) + (requires to also have -parallel mpi_omp) + + -gprof to compile with -pg to enable profiling with gprof + + -cosp to run without our with cospv1 or cospv2 [none/v1/v2] + + -rad RADIATIF can be oldrad, rrtm or ecrad radiatif code + + -nofcm to compile without fcm + + -SCM install 1D version automatically + + -debug compile everything in debug mode + + -opt_makelmdz to call makelmdz or makelmdz_fcm with additional options + + -physiq to choose which physics package to use + + -env_file specify an arch.env file to overwrite the existing one + + -veget surface model to run [NONE/CMIP6/xxxx] + +........fin + exit 1;; + "-v") version=$2; shift; shift;; + "-r") svn=$2; shift; shift;; + "-compiler") compiler=$2 + case $compiler in + "gfortran"|"ifort"|"pgf90") compiler=$2; shift + shift;; + *) echo "Only gfortran , ifort or pgf90 for the " \ + "compiler option" + exit 1 + esac;; + "-d") grid_resolution=$2; shift; shift;; + "-gprof") OPT_GPROF="-pg"; shift;; + "-unstable"|"-testing") trusting=$(echo "$1" | cut -c2-) ; shift;; + "-cosp") cosp=$2 + case $cosp in + "none"|"v1"|"v2") cosp=$2; shift; shift;; + *) echo Only none v1 v2 for cosp option; exit 1 + esac;; + "-nofcm") compile_with_fcm=0; echo This option will be reactivated soon '(promesse du 8dec2022)'; exit 1; shift;; + "-SCM") SCM=1; shift;; + "-opt_makelmdz") OPT_MAKELMDZ="$2"; shift; shift;; + "-rrtm") if [[ $2 = "false" ]]; then + rad="oldrad" + else + rad="rrtm" + fi + shift; shift;; + "-rad") rad=$2 + case $rad in + "oldrad"|"rrtm"|"ecrad") rad=$2; shift; shift;; + *) echo "Only oldrad rrtm ecrad for rad option"; exit 1 + esac;; + "-parallel") parallel=$2 + case $parallel in + "none"|"mpi"|"omp"|"mpi_omp") parallel=$2; shift + shift;; + *) echo "Only none mpi omp mpi_omp for the parallel option" + exit 1 + esac;; + "-bench") bench=$2; shift; shift;; + "-debug") optim=-debug; shift;; + "-name") MODEL=$2; shift; shift;; + "-netcdf") netcdf=$2; shift; shift;; + "-physiq") physiq=$2; shift; shift;; + "-xios") with_xios="y"; shift;; + "-env_file") env_file=$2; shift; shift;; + "-veget") veget=$2; shift; shift;; + *) bash install_lmdz.sh -h; exit 1 + esac +done + +# Option de compilation du rayonnement : depend de $mysvn ><= r4185, +# sera donc definie plus bas + +#opt_rad="" +#case $rad in +# rrtm) opt_rad="-rad rrtm";; +# ecrad) opt_rad="-rad ecrad";; +#esac + + +# Option de compilation pour Cosp +opt_cosp="" +case $cosp in + v1) opt_cosp="-cosp true";; + v2) opt_cosp="-cospv2 true";; +esac + +# Check on veget version +if [[ $veget != 'NONE' && $veget != "CMIP6" ]]; then + re='^[0-9]+$' + if ! [[ $veget =~ $re ]]; then + echo 'Valeur de l option veget non valable' + exit 1 + fi +fi + +#Define veget-related suffix for gcm name +if [[ $veget = 'NONE' ]]; then + suff_orc='' + #For use with tutorial, orchidee_rev is also defined (will be + #written in surface_env at the end of the script) + orchidee_rev='' +else + suff_orc='_orch' +fi + + +if [[ $parallel = none ]]; then + sequential=1; suff_exe='_seq' +else + sequential=0; suff_exe='_para_mem' +fi + +#Chemin pour placer le modele +if [[ $MODEL = "" ]]; then MODEL=./LMDZ$version$svn$optim; fi + + +arch=local + + +if [[ $compiler = g95 ]]; then echo g95 is not supported anymore; exit 1; fi + +################################################################ +# Specificite des machines +################################################################ + +hostname=$(hostname) +if [[ $pclinux = 1 ]]; then o_ins_make="-t g95"; else o_ins_make=""; fi + +case ${hostname:0:5} in + + jean-) compiler="mpiifort"; + par_comp="mpiifort"; + o_ins_make="-t jeanzay"; + make=gmake; + module purge + module load intel-compilers/19.0.4; + #module load intel-mpi/19.0.4; + #module load intel-mkl/19.0.4; + module load hdf5/1.10.5-mpi; + module load netcdf/4.7.2-mpi; + module load netcdf-fortran/4.5.2-mpi; + module load subversion/1.9.7; + module load cmake + export NETCDF_LIBDIR=./ + export NETCDFFORTRAN_INCDIR=./ + export NETCDFFORTRAN_LIBDIR=./ + arch=X64_JEANZAY;; + + cicla|camel) compiler="gfortran"; + module purge + module load gnu/10.2.0 + module load openmpi/4.0.5 + module load hdf5/1.10.7-mpi + module load netcdf-c/4.7.4-mpi + module load netcdf-fortran/4.5.3-mpi + netcdf=/net/nfs/tools/PrgEnv/linux-scientific6-x86_64/gcc-10.2.0/netcdf-fortran-4.5.3-k3drgfqok3lip62hnm3tsyof4cjen5sk + module load svn/1.14.0 + + if [[ $parallel != none ]]; then + root_mpi=/net/nfs/tools/meso-sl6/openmpi/4.0.5-gcc-10.2.0 + path_mpi=$root_mpi/bin; + par_comp=${path_mpi}/mpif90; + mpirun=${path_mpi}/mpirun; + fi; + arch="local" ; + make="make"; + o_ins_make="-t g95";; + + *) if [[ $parallel = none || -f /usr/bin/mpif90 ]]; then + path_mpi=$(which mpif90 | sed -e s:/mpif90::); + if [[ -d /usr/lib64/openmpi ]]; then + root_mpi="/usr/lib64/openmpi" + else + root_mpi="/usr" + fi + else + echo "Cannot find mpif90"; + if [[ $parallel = none ]]; then exit 1; fi; + fi; + if [[ $parallel != none ]]; then + root_mpi=$(which mpif90 | sed -e s:/bin/mpif90::) + path_mpi=$(which mpif90 | sed -e s:/mpif90::) + export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH + fi + par_comp=${path_mpi}/mpif90; + mpirun=${path_mpi}/mpirun; + arch="local" ; + make="make"; + o_ins_make="-t g95" +esac + +# Flags for parallelism: +if [[ $parallel != none ]]; then + # MPI_LD are the flags needed for linking with MPI + MPI_LD="-L${root_mpi}/lib -lmpi" + if [[ "$compiler" = "gfortran" ]]; then + # MPI_FLAGS are the flags needed for compilation with MPI + MPI_FLAGS="-fcray-pointer" + # OMP_FLAGS are the flags needed for compilation with OpenMP + OMP_FLAGS="-fopenmp -fcray-pointer" + # OMP_LD are the flags needed for linking with OpenMP + OMP_LD="-fopenmp" + elif [[ "$compiler" = "ifort" ]]; then + MPI_FLAGS="" + OMP_FLAGS="-openmp" + OMP_LD="-openmp" + else # pgf90 + MPI_FLAGS="" + OMP_FLAGS="-mp" + OMP_LD="-mp" + fi +fi + +##################################################################### +# Test for old gfortran compilers +# If the compiler is too old (older than 4.3.x) we test if the +# temporary gfortran44 patch is available on the computer in which +# case the compiler is changed from gfortran to gfortran44 +# Must be aware than parallelism can not be activated in this case +##################################################################### + +if [[ "$compiler" = "gfortran" ]]; then + gfortran=gfortran + gfortranv=$(gfortran --version | \ + head -1 | awk ' { print $NF } ' | awk -F. ' { print $1 * 10 + $2 } ') + if [[ $gfortranv -le 43 ]]; then + \cat < tt.f90 +print*,'coucou' +end +eod + $compiler tt.f90 || a.out + ./a.out >| tt + if [[ $(< tt sed -e 's/ //g' ) != "coucou" ]]; then + echo "problem installing with compiler $compiler"; exit 1; fi + \rm tt a.out tt.f90 + fi +fi + +########################################################################### +if [[ $getlmdzor = 1 && ! -d $MODEL/modipsl ]]; then +########################################################################### + echo "##########################################################" + echo "Download a slightly modified version of LMDZ" + echo "##########################################################" + cd "$MODEL" + getlog=$(pwd)/get.log + echo logfile : "$getlog" + myget "src_archives/$trusting/modipsl.$version.tar.gz" >> get.log 2>&1 + echo install_lmdz.sh wget_OK "$(date)" + gunzip "modipsl.$version.tar.gz" >> get.log 2>&1 + tar xf "modipsl.$version.tar" >> get.log 2>&1 + \rm "modipsl.$version.tar" +fi + +########################################################################### +echo Installing Netcdf +########################################################################### + +if [[ $netcdf = 0 ]]; then + ncdfdir=/usr + +else + cd "$MODEL" + + case $compiler in + gfortran) opt1="-compiler gnu"; opt2="-CC gcc -FC gfortran -CXX g++";; + ifort) opt1="-compiler intel"; opt2="-CC icc -FC ifort -CXX icpc";; + pgf90) opt1="-compiler pgf90"; opt2="-CC pgcc -FC pgf90 -CXX pgCC";; + *) echo "unexpected compiler $compiler" for netcdf; exit 1 + esac + + case $with_xios in + n) script_install_netcdf=install_netcdf4_hdf5_seq.bash + ncdfdir=netcdf4_hdf5_seq + opt_=$opt1;; + y) script_install_netcdf=install_netcdf4_hdf5.bash + ncdfdir=netcdf4_hdf5 + opt_="$opt2 -MPI $root_mpi";; + *) echo with_xios=$with_xios, should be n or y; exit 1 + esac + if [[ $netcdf = 1 ]]; then + ncdfdir=$MODEL/$ncdfdir + else + mkdir -p $netcdf; ncdfdir=$netcdf/$ncdfdir + fi + + echo "Repertoire netcdf $ncdfdir" + if [[ ! -d $ncdfdir ]]; then + netcdflog=$(pwd)/netcdf.log + echo "----------------------------------------------------------" + echo "Compiling the Netcdf library" + echo "----------------------------------------------------------" + echo "log file : $netcdflog" + myget script_install/$script_install_netcdf >> "$netcdflog" 2>&1 + chmod u=rwx $script_install_netcdf + # shellcheck disable=SC2086 + ./$script_install_netcdf -prefix "$ncdfdir" $opt_ >> "$netcdflog" 2>&1 + fi + + #---------------------------------------------------------------------------- + # LF rajout d'une verrue, pour une raison non encore expliquee, + # la librairie est parfois rang�e dans lib64 et non dans lib + # par certains compilateurs + if [[ ! -e lib && -d lib64 ]]; then ln -s lib64 lib; fi + #---------------------------------------------------------------------------- + + echo install_lmdz.sh netcdf_OK "$(date)" + +fi + +cat >test_netcdf90.f90 < tmp + sed -e "s:F_L = g95:F_L = $compiler:" \ + -e "s:F_C = g95 -c -cpp:F_C = $F_C": \ + -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ + -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= '"$ncdfdir"'/include:' \ + -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdff -lnetcdf:' \ + -e 's:g95 L_O =:g95 L_O = -Wl,-rpath='"$ncdfdir"'/lib:' \ + -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ + -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ + tmp >| AA_make.gdef + + if [[ $pcmac == 1 ]] + then + cp AA_make.gdef tmp + sed -e 's/rpath=/rpath,/g' tmp > AA_make.gdef + fi + + + # We use lines for g95 even for the other compilers to run ins_make + if [[ "$use_shell" = "ksh" ]]; then + ./ins_make "$o_ins_make" + else # bash + sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash + if [[ $(grep jeanzay AA_make.gdef) = "" ]]; then + # Bidouille pour compiler sur ada des vieux modipsl.tar + echo 'Warning jean-zay not in AA_make.gdef' + echo 'Think about updating' + exit 1 + fi + + chmod u=rwx ins_make.bash + ./ins_make.bash "$o_ins_make" + fi # of if [[ "$use_shell" = "ksh" ]] + + echo "install_lmdz.sh MODIPSL_OK $(date)" + + cd "$MODEL/modipsl/modeles/IOIPSL/src" + ioipsllog=$(pwd)/ioipsl.log + echo '##########################################################' + echo 'Compiling IOIPSL, the interface library with Netcdf' + echo '##########################################################' + echo "log file : $ioipsllog $(date)" + + if [[ "$use_shell" = "bash" ]]; then + cp Makefile Makefile.ksh + sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile + fi + ### if [[ "$pclinux" = 1 ]]; then + # Build IOIPSL modules and library + $make clean + $make > "$ioipsllog" 2>&1 + if [[ $compiler = "$gfortran" || $compiler = "mpif90" ]]; then + # copy module files to lib + cp -f -- *.mod ../../../lib + fi + # Build IOIPSL tools (ie: "rebuild", if present) + # For IOIPSLv_2_2_2, "rebuild" files are in IOIPSL/tools + rebuild_dir="" + if [[ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ]]; then + rebuild_dir=$MODEL/modipsl/modeles/IOIPSL/tools + elif [[ -d $MODEL/modipsl/modeles/IOIPSL/rebuild ]]; then + rebuild_dir=$MODEL/modipsl/modeles/IOIPSL/rebuild + fi + if [[ $rebuild_dir != "" ]]; then + cd "$rebuild_dir" + # adapt Makefile & rebuild script if in bash + if [[ "$use_shell" = "bash" ]]; then + cp Makefile Makefile.ksh + sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile + cp rebuild rebuild.ksh + sed -e 's:/bin/ksh:/bin/bash:g' \ + -e 's:print -u2:echo:g' \ + -e 's:print:echo:g' rebuild.ksh > rebuild + fi + $make clean + $make > "$ioipsllog" 2>&1 + fi + ### fi # of if [[ "$pclinux" = 1 ]] which is commented out + + else # of if [[ $ioipsl = 1 ]] + if [[ ${hostname:0:5} = jean- ]]; then + cd "$MODEL/modipsl" + cd util + if [[ $(grep jeanzay AA_make.gdef) = "" ]]; then + echo 'Warning jean-zay not in AA_make.gdef' + echo 'Think about updating' + exit 1 + fi + ./ins_make "$o_ins_make" + # Compile IOIPSL on jean-zay + cd "$MODEL/modipsl/modeles/IOIPSL/src" + gmake > ioipsl.log + # For IOIPSLv_2_2_2, "rebuild" files are in IOIPSL/tools, so "gmake" in IOIPSL/tools is enough + # For IOIPSLv_2_2_5, "rebuild" files are in a separate IOIPSL/rebuild folder , while "tools" only contains "FCM" + if [[ -f $MODEL/modipsl/modeles/IOIPSL/tools/Makefile ]]; then + cd "$MODEL/modipsl/modeles/IOIPSL/tools" + gmake > ioipsl.log + fi + if [[ -d $MODEL/modipsl/modeles/IOIPSL/rebuild ]]; then + cd "$MODEL/modipsl/modeles/IOIPSL/rebuild" + gmake > ioipsl.log + fi + + fi + echo "install_lmdz.sh ioipsl_OK $(date)" + fi # of if [[ $ioipsl = 1 ]] +fi # of if [[ ! -f $MODEL/modipsl/lib/libioipsl.a ]] + +#========================================================================= +if [[ "$with_xios" = "y" ]]; then + echo '##########################################################' + echo 'Compiling XIOS' + echo '##########################################################' + cd "$MODEL/modipsl/modeles" + xioslog="$(pwd)/xios.log" + #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash + myget script_install/install_xios.bash + chmod u=rwx install_xios.bash +# following will be recalculated later on once LMDZ is updated +# mysvn=`svnversion LMDZ | egrep || "[0-9]+" 2>/dev/null` + mysvn=$(grep 'Revision: [0-9]' "$MODEL"/Read*.md | awk ' { print $2 } ' 2>/dev/null) + if [[ $svn != "" ]]; then mysvn=$svn; fi + echo "mysvn $mysvn" + + if [[ ${hostname:0:5} = jean- ]]; then + if [[ $mysvn -ge 4619 ]]; then + svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS2/branches/xios-2.6 \ + XIOS + else + svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS2/branches/xios-2.5 \ + XIOS + fi + cd XIOS/arch + svn update + cd .. + echo "Compiling XIOS, start $(date) (it takes about 20 min on Jean-Zay)" + echo "log file: $xioslog" + ./make_xios --prod --arch $arch --job 4 > xios.log 2>&1 + else + ./install_xios.bash -prefix "$MODEL/modipsl/modeles" \ + -netcdf "$ncdfdir" -hdf5 "$ncdfdir" \ + -MPI "$root_mpi" -arch $arch > xios.log 2>&1 + fi # of case Jean-Zay + if [[ -f XIOS/lib/libxios.a ]]; then + echo "XIOS library successfully generated" + echo install_lmdz.sh XIOS_OK "$(date)" + fi +fi + +#============================================================================ +veget_version=false +if [[ "$veget" != 'NONE' ]]; then + cd "$MODEL/modipsl/modeles/ORCHIDEE" + set +e; svn upgrade; set -e + if [[ "$veget" = "CMIP6" ]]; then + veget_version=orchidee2.0 + orchidee_rev=6592 + else # specific orchidee revision newer than CMIP6, on 2_1 or 2_2 branches + veget_version=orchidee2.1 + orchidee_rev=$veget + if [[ $veget -lt 4465 ]]; then + echo 'Stopping, ORCHIDEE version too old, script needs work on ' \ + 'the CPP flags to pass to makelmdz' + exit 1 + fi + set +e + # which branch is my version on? + orcbranch=$(svn log -v -q svn://forge.ipsl.jussieu.fr/orchidee/ -r "$veget" |grep ORCHIDEE |head -1| sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' | awk '{print $2}') + # switch to that branch + echo IF YOU INSTALL ORCHIDEE THE VERY FIRST TIME, ASK for PASSWORD at \ + orchidee-help@listes.ipsl.fr + svn switch -r "$veget" --accept theirs-full "svn://forge.ipsl.jussieu.fr/orchidee/$orcbranch" + if ! (svn log -r "$veget" | grep "$veget"); then + echo 'Cannot update ORCHIDEE as not on the right branch for ORCHIDEE' + exit 1 + fi + set -e + set +e; svn update -r "$veget"; set -e + fi + # Correctif suite debug Jean-Zay + sed -i -e 's/9010 FORMAT(A52,F17.14)/9010 FORMAT(A52,F20.14)/' \ + src_stomate/stomate.f90 + opt_orc="-prod"; if [[ "$optim" = "-debug" ]]; then opt_orc="-debug"; fi + + orchideelog=$(pwd)/orchidee.log + echo '########################################################' + echo 'Compiling ORCHIDEE, the continental surface model ' + echo '########################################################' + echo "Start of the first compilation of orchidee, in sequential mode: $(date)" + echo "log file : $orchideelog" + + ORCHPATH=$(pwd) + export ORCHPATH=$ORCHPATH + xios_orchid="-noxios" + if [[ "$with_xios" = "y" ]]; then + xios_orchid="-xios" + fi + if [[ -d tools ]]; then + ################################################################### + # Pour les experts qui voudraient changer de version d'orchidee. + # Attention : necessite d'avoir le password pour orchidee + + # Correctif suite debug Jean-Zay + if [[ -f src_global/time.f90 ]]; then + sed -i -e 's/CALL tlen2itau/\!CALL tlen2itau/' src_global/time.f90 + fi + ################################################################### + if [[ "$veget_version" == "false" ]]; then + veget_version=orchidee2.0 + fi + cd arch + sed -e s:"%COMPILER .*.$:%COMPILER $compiler":1 \ + -e s:"%LINK .*.$:%LINK $compiler":1 \ + -e s:"%FPP_FLAGS .*.$:%FPP_FLAGS $fpp_flags":1 \ + -e s:"%PROD_FFLAGS .*.$:%PROD_FFLAGS $OPTIM":1 \ + -e s:"%DEV_FFLAGS .*.$:%DEV_FFLAGS $OPTDEV":1 \ + -e s:"%DEBUG_FFLAGS .*.$:%DEBUG_FFLAGS $OPTDEB":1 \ + -e s:"%BASE_FFLAGS .*.$:%BASE_FFLAGS $OPTPREC":1 \ + -e s:"%BASE_LD .*.$:%BASE_LD $BASE_LD":1 \ + -e s:"%ARFLAGS .*.$:%ARFLAGS $ARFLAGS":1 \ + arch-gfortran.fcm > arch-local.fcm + cat < arch-local.path +NETCDF_LIBDIR="-L$ncdfdir/lib -lnetcdff -lnetcdf" +NETCDF_INCDIR="$ncdfdir/include" +IOIPSL_INCDIR="$ORCHPATH/../../lib" +IOIPSL_LIBDIR="$ORCHPATH/../../lib" +XIOS_INCDIR="\$ORCHDIR/../XIOS/inc" +XIOS_LIBDIR="\$ORCHDIR/../XIOS/lib -lxios" +EOF + cd ../ + + echo ./makeorchidee_fcm -j $xios_orchid $opt_orc -parallel none \ + -arch $arch + ./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel none \ + -arch $arch > "$orchideelog" 2>&1 + pwd + else # of "if [[ -d tools ]]" + if [[ -d src_parallel ]]; then + liste_src="parallel parameters global stomate sechiba driver" + if [[ "$veget_version" == "false" ]]; then + veget_version=orchidee2.0 + fi + fi + for d in $liste_src; do + src_d=src_$d + echo src_d "$src_d" + echo ls; ls + if [[ ! -d $src_d ]]; then + echo "Problem orchidee : no $src_d"; exit 1 + fi + cd "$src_d"; \rm -f -- *.mod make; $make clean + $make > "$orchideelog" 2>&1 + if [[ "$compiler" = "$gfortran" || "$compiler" = "mpif90" ]]; then + cp -f -- *.mod ../../../lib + fi + cd .. + done + fi # of "if [[ -d tools ]]" + echo "install_lmdz.sh orchidee_compil_seq_OK $(date)" +fi # of if [[ "$veget" != 'NONE' ]] + + +#============================================================================ +# Ehouarn: the directory name LMDZ* depends on version/tar file... +if [[ -d $MODEL/modipsl/modeles/LMD* ]]; then + echo '###############################################################' + echo 'Preparing LMDZ compilation : arch file, svn switch if needed...' + echo '###############################################################' + cd "$MODEL/modipsl/modeles/"LMD* + LMDZPATH=$(pwd) +else + echo "ERROR: No LMD* directory !!!" + exit 1 +fi + +########################################################### +# For those who want to use fcm to compile via : +# makelmdz_fcm -arch local ..... +############################################################ + + + +cd "$MODEL/modipsl/modeles"/LMDZ* +lmdzlog=$(pwd)/lmdz.log + +################################################################## +# Possibly update LMDZ if a specific svn release is requested +################################################################## + +set +e; svn upgrade; set -e + +if [[ $svn = "last" ]]; then svnopt=""; else svnopt="-r $svn"; fi +if [[ $svn != "" ]]; then + if set +e; svn info | grep -q 'https:'; then + svn switch --relocate https://svn.lmd.jussieu.fr/LMDZ \ + http://svn.lmd.jussieu.fr/LMDZ + fi + svn update "$svnopt" + set -e +fi + +#--------------------------------------------------------------------- +# Retrieve the final svn release number, and adjust compilation +# options accordingly +# If svn not available, will use the svn writen in $MODEL/Readm*md +# For old version it assumes that it is before 4185 (the version +# for which the test was introduced +#--------------------------------------------------------------------- + +set +e; mysvn=$(svnversion . | grep -E || "[0-9]+" 2>/dev/null); set -e +if [[ "$mysvn" = "" ]]; then mysvn=$(grep 'Revision: [0-9]' "$MODEL"/Read*.md | awk ' { print $2 } ' 2>/dev/null); fi +if [[ "$mysvn" = "" ]]; then mysvn=4190; fi + +if [[ "$pclinux" = "1" && ! -f arch/arch-local.path ]]; then + + # create local 'arch' files (if on Linux PC): + cd arch + # arch-local.path file + # test for version as arch.pth file changed format with rev 4426 + if [[ "$mysvn" -gt 4425 ]]; then + cat < arch-local.path +NETCDF_LIBDIR="-L$ncdfdir/lib" +NETCDF_LIB="-lnetcdff -lnetcdf\" +NETCDF_INCDIR=-I$ncdfdir/include +NETCDF95_INCDIR=-I\$LMDGCM/../../include +NETCDF95_LIBDIR=-L\$LMDGCM/../../lib +NETCDF95_LIB=-lnetcdf95 +IOIPSL_INCDIR=-I\$LMDGCM/../../lib +IOIPSL_LIBDIR=-L\$LMDGCM/../../lib +IOIPSL_LIB=-lioipsl +XIOS_INCDIR=-I\$LMDGCM/../XIOS/inc +XIOS_LIBDIR=-L\$LMDGCM/../XIOS/lib +XIOS_LIB="-lxios -lstdc++" +ORCH_INCDIR=-I\$LMDGCM/../../lib +ORCH_LIBDIR=-L\$LMDGCM/../../lib +EOF + else + cat < arch-local.path +NETCDF_LIBDIR="-L$ncdfdir/lib -lnetcdff -lnetcdf" +NETCDF_INCDIR=-I$ncdfdir/include +NETCDF95_INCDIR=\$LMDGCM/../../include +NETCDF95_LIBDIR=\$LMDGCM/../../lib +IOIPSL_INCDIR=\$LMDGCM/../../lib +IOIPSL_LIBDIR=\$LMDGCM/../../lib +XIOS_INCDIR=\$LMDGCM/../XIOS/inc +XIOS_LIBDIR=\$LMDGCM/../XIOS/lib +ORCH_INCDIR=\$LMDGCM/../../lib +ORCH_LIBDIR=\$LMDGCM/../../lib +EOF + fi + + if [[ $pcmac == 1 ]]; then + BASE_LD="$BASE_LD -Wl,-rpath,${ncdfdir}/lib" + else + BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib" + fi + # Arch-local.fcm file (adapted from arch-linux-32bit.fcm) + + if [[ $real = r8 ]]; then FPP_DEF=NC_DOUBLE; else FPP_DEF=""; fi + sed -e s:"%COMPILER .*.$:%COMPILER $compiler":1 \ + -e s:"%LINK .*.$:%LINK $compiler":1 \ + -e s:"%PROD_FFLAGS .*.$:%PROD_FFLAGS $OPTIM":1 \ + -e s:"%DEV_FFLAGS .*.$:%DEV_FFLAGS $OPTDEV":1 \ + -e s:"%DEBUG_FFLAGS .*.$:%DEBUG_FFLAGS $OPTDEB":1 \ + -e s:"%BASE_FFLAGS .*.$:%BASE_FFLAGS $OPTPREC":1 \ + -e s:"%FPP_DEF .*.$:%FPP_DEF $FPP_DEF":1 \ + -e s:"%BASE_LD .*.$:%BASE_LD $BASE_LD":1 \ + -e s:"%ARFLAGS .*.$:%ARFLAGS $ARFLAGS":1 \ + arch-linux-32bit.fcm > arch-local.fcm + + cd .. + ### Adapt "bld.cfg" (add the shell): + #whereisthatshell=$(which ${use_shell}) + #echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg + +fi # of if [[ "$pclinux" = 1 ]] +#--------------------------------------------------------------------- +# Option de compilation du rayonnement : depend de $mysvn ><= r4185 +#--------------------------------------------------------------------- +opt_rad="" + +case $rad in + oldrad) iflag_rrtm=0; NSW=2; opt_rad="";; + rrtm) iflag_rrtm=1; NSW=6 + if [[ $mysvn -le 4185 ]]; then + opt_rad="-rrtm true" + else + opt_rad="-rad rrtm" + fi;; + ecrad) iflag_rrtm=2; NSW=6; opt_rad="-rad ecrad";; + *) echo "Only oldrad rrtm ecrad for rad option"; exit 1 +esac + +if [[ $mysvn -le 4185 && $rad = "ecrad" ]]; then + echo "ecrad only available for LMDZ rev starting with 4186 "; exit 1 +fi + +################################################################## + + +if [[ ! -f libf/misc/netcdf95.F90 && ! -d $MODEL/NetCDF95-0.3 ]]; then + cd "$MODEL" + myget src_archives/netcdf/NetCDF95-0.3.tar.gz + tar -xf NetCDF95-0.3.tar.gz + rm NetCDF95-0.3.tar.gz + cd NetCDF95-0.3 + mkdir build + cd build + cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="$ncdfdir" \ + -DCMAKE_INSTALL_PREFIX="$MODEL/modipsl" + make install + cd "$MODEL/modipsl/modeles/"LMDZ* +fi + +echo '##################################################################' +echo "Preparing script compile.sh for LMDZ compilation" +echo "It will only be run automatically if bench=1/tuto" +echo "Here bench=$bench" +echo '##################################################################' + +if [[ $env_file != "" ]]; then + mv arch/arch-${arch}.env arch/arch-${arch}.orig + \cp -f "$env_file" arch/arch-${arch}.env +fi + +if [[ $compile_with_fcm = 1 ]]; then + makelmdz="makelmdz_fcm $optim -arch $arch -j 8 " +else + makelmdz="makelmdz $optim -arch $arch" +fi + +# sequential compilation +if [[ "$sequential" = 1 ]]; then + echo Sequential compilation command, saved in compile.sh: + echo "./$makelmdz $optim $OPT_MAKELMDZ $optim $opt_rad $opt_cosp " \ + "-d ${grid_resolution} -v $veget_version gcm " + echo "./$makelmdz $optim $OPT_MAKELMDZ $optim $opt_rad $opt_cosp " \ + "-d ${grid_resolution} -v $veget_version gcm " > compile.sh + chmod +x ./compile.sh + if [[ $bench = 1 ]]; then + echo "install_lmdz.sh start_lmdz_seq_compilation $(date)" + echo "log file: $lmdzlog" + ./compile.sh > "$lmdzlog" 2>&1 + echo "install_lmdz.sh end_lmdz_seq_compilation $(date)" + fi +fi # fin sequential + +# compiling in parallel mode +if [[ $parallel != "none" ]]; then + echo '##########################################################' + echo ' Parallel compile ' + echo '##########################################################' + echo "(after saving the sequential libs and binaries)" + cd "$MODEL/modipsl" + tar cf sequential.tar bin/ lib/ + # + # Orchidee + # + cd "$ORCHPATH" + if [[ -d src_parallel && $veget != 'NONE' ]]; then + cd arch + sed \ + -e s:"%COMPILER.*.$:%COMPILER $par_comp":1 \ + -e s:"%LINK.*.$:%LINK $par_comp":1 \ + -e s:"%MPI_FFLAG.*.$:%MPI_FFLAGS $MPI_FLAGS":1 \ + -e s:"%OMP_FFLAG.*.$:%OMP_FFLAGS $OMP_FLAGS":1 \ + -e s:"%MPI_LD.*.$:%MPI_LD $MPI_LD":1 \ + -e s:"%OMP_LD.*.$:%OMP_LD $OMP_LD":1 \ + arch-local.fcm > tmp.fcm + + mv tmp.fcm arch-local.fcm + cd ../ + echo "Compiling ORCHIDEE in parallel mode $(date)" + echo "logfile $orchideelog" + echo "NOTE : to recompile it when necessary, use ./compile_orc.sh " \ + "in modipsl/modeles/ORCHIDEE" + echo ./makeorchidee_fcm -j 8 -clean $xios_orchid $opt_orc \ + -parallel "$parallel" -arch $arch > compile_orc.sh + echo ./makeorchidee_fcm -j 8 $xios_orchid $opt_orc \ + -parallel "$parallel" -arch $arch >> compile_orc.sh + echo echo Now you must also recompile LMDZ, by running ./compile.sh \ + in modeles/LMDZ >> compile_orc.sh + chmod u+x compile_orc.sh + ./makeorchidee_fcm -j 8 -clean $xios_orchid $opt_orc \ + -parallel "$parallel" -arch $arch > "$orchideelog" 2>&1 + ./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel "$parallel" \ + -arch $arch >> "$orchideelog" 2>&1 + echo "End of ORCHIDEE compilation in parallel mode $(date)" + elif [[ $veget != 'NONE' ]]; then + echo '##########################################################' + echo ' Orchidee version too old ' + echo ' Please update to new version ' + echo '##########################################################' + exit 1 + fi #�of [ -d src_parallel && $veget != 'NONE' ] + + # LMDZ + cd "$LMDZPATH" + if [[ $arch = local ]]; then + cd arch + sed -e s:"%COMPILER.*.$:%COMPILER $par_comp":1 \ + -e s:"%LINK.*.$:%LINK $par_comp":1 \ + -e s:"%MPI_FFLAG.*.$:%MPI_FFLAGS $MPI_FLAGS":1 \ + -e s:"%OMP_FFLAG.*.$:%OMP_FFLAGS $OMP_FLAGS":1 \ + -e s:"%ARFLAGS.*.$:%ARFLAGS $ARFLAGS":1 \ + -e "s§%BASE_LD.*.$§%BASE_LD -Wl,-rpath=${root_mpi}/lib:${ncdfdir}/lib§1" \ + -e s:"%MPI_LD.*.$:%MPI_LD $MPI_LD":1 \ + -e s:"%OMP_LD.*.$:%OMP_LD $OMP_LD":1 \ + arch-local.fcm > tmp.fcm + mv tmp.fcm arch-local.fcm + cd ../ + fi + rm -f compile.sh + echo resol="$grid_resolution" >> compile.sh + if [[ ${hostname:0:5} = jean- && "$cosp" = "v2" ]]; then + + echo "LMDZ compilation command in parallel mode, saved in compile.sh, is :" + echo "(ATTENTION le probleme de cospv2 sur jean-zay en mode prod " \ + "n est pas corrige ! )" + # ATTENTION le probleme de cospv2 sur jean-zay en mode prod n + # est pas corrige + echo ./"$makelmdz" -dev $optim "$OPT_MAKELMDZ" "$opt_rad" "$opt_cosp" \ + "$opt_makelmdz_xios" -d \$resol -v $veget_version -mem \ + -parallel "$parallel" gcm >> compile.sh + echo ./"$makelmdz" -dev $optim "$OPT_MAKELMDZ" "$opt_rad" "$opt_cosp" \ + "$opt_makelmdz_xios" -d \$resol -v $veget_version -mem \ + -parallel "$parallel" gcm + else + echo ./"$makelmdz" $optim "$OPT_MAKELMDZ" "$opt_rad" "$opt_cosp" \ + "$opt_makelmdz_xios" -d \$resol -v $veget_version -mem \ + -parallel "$parallel" gcm >> compile.sh + echo ./"$makelmdz" $optim "$OPT_MAKELMDZ" "$opt_rad" "$opt_cosp" \ + "$opt_makelmdz_xios" -d \$resol -v $veget_version -mem \ + -parallel "$parallel" gcm + fi + chmod +x ./compile.sh + + if [[ $bench = 1 ]]; then + echo "Compiling LMDZ in parallel mode $(date), LMDZ log file: $lmdzlog" + ./compile.sh > "$lmdzlog" 2>&1 + fi + +fi # of if [[ $parallel != "none" ]] + + +################################################################## +# Verification du succes de la compilation +################################################################## + +# Recherche de l'executable dont le nom a change au fil du temps ... +# suffix contains radiative option starting with revision 4186 +if [[ $mysvn -ge 4186 ]]; then suff_exe=_${rad}${suff_exe}; fi +gcm="" + +for exe in gcm.e bin/gcm_${grid_resolution}_phylmd${suff_exe}${suff_orc}.e +do + if [[ -f $exe ]]; then gcm=$exe; fi +done + +if [[ "$gcm" = "" ]]; then + if [[ $bench = 1 ]]; then + echo 'Compilation failed !! Cannot run the benchmark;' + exit 1 + else + echo 'Compilation not done (only done when bench=1)' + fi +else + echo '##########################################################' + echo "Compilation successfull !! $(date)" + echo '##########################################################' + echo "The executable is $gcm" +fi + +################################################################## +# Below, we run a benchmark if bench=1 or tuto +################################################################## + +if [[ $bench = tuto ]]; then + myget Training/tutorial.tar; tar xf tutorial.tar; cd TUTORIAL + ./init.sh + +elif [[ $bench = 1 && ! -d BENCH${grid_resolution} ]]; then + # TOUTE CETTE SECTION DEVRAIT DISPARAITRE POUR UNE COMMANDE + # OU DES BENCHS PAR MOTS CLES COMME tuto + + echo '##########################################################' + echo ' Running a test run ' + echo '##########################################################' + + \rm -rf "BENCH${grid_resolution}" + bench=bench_lmdz_${grid_resolution} + echo "install_lmdz.sh before bench download $(date)" + #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$bench.tar.gz + myget "3DBenchs/$bench.tar.gz" + echo "install_lmdz.sh after bench download $(date)" + tar xf "$bench.tar.gz" + + if [[ "$cosp" = "v1" || "$cosp" = "v2" ]]; then + cd "BENCH${grid_resolution}" + # copier les fichiers namelist input et output our COSP + cp ../DefLists/cosp*_input_nl.txt . + cp ../DefLists/cosp*_output_nl.txt . + # Activer la cles ok_cosp pour tourner avec COSP + sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp + \mv -f tmp config.def + cd .. + fi + + if [[ -n "$physiq" ]]; then + cd "BENCH${grid_resolution}" + if [[ -f "physiq.def_${physiq}" ]]; then + cp "physiq.def_${physiq}" physiq.def + echo using "physiq.def_${physiq}" + else + echo using standard physiq.def + fi + cd .. + else + echo using standard physiq.def + fi + + if [[ "$with_xios" = "y" ]]; then + cd "BENCH${grid_resolution}" + cp ../DefLists/iodef.xml . + cp ../DefLists/context_lmdz.xml . + cp ../DefLists/field_def_lmdz.xml . + # A raffiner par la suite + echo "A FAIRE : Copier les *xml en fonction de l option cosp" + cp ../DefLists/field_def_cosp*.xml . + cp ../DefLists/file_def_hist*xml . + # adapt iodef.xml to use attached mode + sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' \ + iodef.xml > tmp + \mv -f tmp iodef.xml + + # and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE. + # except for histday + for histfile in file_def_hist*xml + do + if [[ "$histfile" = "file_def_histday_lmdz.xml" ]]; then + sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' \ + "$histfile" > tmp + \mv -f tmp "$histfile" + sed -e 's@output_level="_AUTO_"@output_level="5"@' "$histfile" \ + > tmp + \mv -f tmp "$histfile" + sed -e 's@compression_level="2"@compression_level="0"@' \ + "$histfile" > tmp + \mv -f tmp "$histfile" + else + sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \ + "$histfile" > tmp + \mv -f tmp "$histfile" + fi + done + # and add option "ok_all_xml=y" in config.def + echo "### XIOS outputs" >> config.def + echo 'ok_all_xml=.true.' >> config.def + + #activer les sorties pour Cosp + if [[ "$cosp" = "v1" ]]; then + sed -i'' -e 's@enabled=".FALSE."@enabled=".TRUE."@' \ + -e 's@output_level="_AUTO_"@output_level="5"@' \ + -e 's@compression_level="2"@compression_level="0"@' \ + file_def_histdayCOSP_lmdz.xml + fi + if [[ "$cosp" = "v2" ]]; then + sed -e 's@compression_level="2"@compression_level="0"@' file_def_histdayCOSPv2_lmdz.xml + for type_ in hf day mth; do + file=file_def_hist${type_}COSP + sed -i'' -e 's@src="./'${file}'_lmdz.xml"@src="./'${file}'v2_lmdz.xml"@' context_lmdz.xml + done + sed -i '' -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' field_def_lmdz.xml + fi + + cd .. + fi + + # Cas Bensh avec ecrad + if [[ "$rad" = "ecrad" ]]; then + cd "BENCH${grid_resolution}" + cp ../DefLists/namelist_ecrad . + cp -r ../libf/phylmd/ecrad/data . + cd .. + fi + + # Adjusting bench physiq.def to radiative code chosen + cd "BENCH${grid_resolution}" + sed -e 's/iflag_rrtm=.*.$/iflag_rrtm='$iflag_rrtm'/' \ + -e 's/NSW=.*.$/NSW='$NSW'/' physiq.def > tmpdef + \mv tmpdef physiq.def + cd .. + + cp "$gcm" "BENCH${grid_resolution}/gcm.e" + + cd "BENCH${grid_resolution}" + # On cree le fichier bench.sh au besoin + # Dans le cas 48x36x39 le bench.sh existe deja en parallele + + if [[ "$grid_resolution" = "48x36x39" ]]; then + echo On ne touche pas au bench.sh + # But we have to adapt "run_local.sh" for $mpirun + sed -e "s@mpirun@$mpirun@g" run_local.sh > tmp + mv -f tmp run_local.sh + chmod u=rwx run_local.sh + elif [[ "${parallel:0:3}" = "mpi" ]]; then + # Lancement avec deux procs mpi et 2 openMP + echo "export OMP_STACKSIZE=800M" > bench.sh + if [[ "${parallel:4:3}" = "omp" ]]; then + echo "export OMP_NUM_THREADS=2" >> bench.sh + fi + if [[ "$cosp" = "v1" || "$cosp" = "v2" ]]; then + if [[ ${hostname:0:5} = jean- ]]; then + chmod +x ../arch.env + ../arch.env + echo "ulimit -s 2000000" >> bench.sh + else + echo "ulimit -s 200000" >> bench.sh + fi + else + echo "ulimit -s unlimited" >> bench.sh + fi + if [[ ${hostname:0:5} = jean- ]]; then + . ../arch/arch-${arch}.env + echo "srun -n 2 && $idris_acct@cpu gcm.e > listing 2>&1" \ + >> bench.sh + else + echo "$mpirun -np 2 gcm.e > listing 2>&1" >> bench.sh + fi + # Add rebuild, using reb.sh if it is there + cat <> bench.sh +if [[ -f reb.sh ]]; then + ./reb.sh histday; ./reb.sh histmth; ./reb.sh histhf; + ./reb.sh histins; ./reb.sh stomate_history; + ./reb.sh sechiba_history; ./reb.sh sechiba_out_2 +fi +EOF + else + echo "./gcm.e > listing 2>&1" > bench.sh + fi + # Getting orchidee stuff + if [[ $veget == 'CMIP6' ]]; then + #echo 'myget 3DBenchs/BENCHorch11.tar.gz' + #myget 3DBenchs/BENCHorch11.tar.gz + #tar xvzf BENCHorch11.tar.gz + echo 'myget 3DBenchs/BENCHCMIP6.tar.gz' + myget 3DBenchs/BENCHCMIP6.tar.gz + tar xvzf BENCHCMIP6.tar.gz + sed -e "s:VEGET=n:VEGET=y:" config.def > tmp + mv -f tmp config.def + if [[ "$with_xios" = "y" ]]; then + cp ../../ORCHIDEE/src_xml/context_orchidee.xml . + echo '' \ + > add.tmp + cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml . + cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml . + cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml . + if [[ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ]]; then + cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml . + echo '' >> add.tmp + fi + sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp + mv tmp iodef.xml + sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' \ + file_def_orchidee.xml > tmp + \mv -f tmp file_def_orchidee.xml + sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \ + file_def_orchidee.xml > tmp + \mv -f tmp file_def_orchidee.xml + sed -e 's@output_level="_AUTO_"@output_level="1"@' \ + file_def_orchidee.xml > tmp + \mv -f tmp file_def_orchidee.xml + sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' \ + file_def_orchidee.xml > tmp + \mv -f tmp file_def_orchidee.xml + sed -e 's@compression_level="4"@compression_level="0"@' \ + file_def_orchidee.xml > tmp + \mv -f tmp file_def_orchidee.xml + sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' \ + orchidee.def > tmp + \mv -f tmp orchidee.def + fi + fi + + if [[ -f ../arch.env ]] + then + source ../arch.env + fi + + echo EXECUTION DU BENCH + set +e + date; ./bench.sh > out.bench 2>&1; date + set -e + tail listing + + + echo "##########################################################" + echo "Simulation finished in $(pwd)" + echo "You have compiled with:" + cat ../compile.sh + if [[ $parallel = "none" ]]; then + echo "You may re-run it with : cd $(pwd) ; gcm.e" + echo "or ./bench.sh" + else + echo "You may re-run it with : " + echo "cd $(pwd) ; ./bench.sh" + # echo 'ulimit -s unlimited' + # echo 'export OMP_NUM_THREADS=2' + # echo 'export OMP_STACKSIZE=800M' + # echo "$mpirun -np 2 gcm.e " + fi + echo '##########################################################' + +fi # bench + + +################################################################# +# Installation eventuelle du 1D +################################################################# + +if [[ $SCM = 1 ]]; then + cd "$MODEL" + myget 1D/1D.tar.gz + tar xf 1D.tar.gz + cd 1D + if [[ $rad = oldrad ]]; then + sed -i'' -e 's/^rad=.*$/rad=oldrad/' run.sh + sed -i'' -e 's/^rad=.*$/rad=oldrad/' bin/compile + fi + echo "Running 1D/run.sh, log in $(pwd)/run1d.log" + ./run.sh > "$(pwd)/run1d.log" 2>&1 +fi + + +################################################################# +# sauvegarde des options veget pour utilisation eventuelle tutorial_prod +################################################################# +cd "$MODEL/modipsl/modeles" +#echo surface_env file created in $MODEL +cat <surface_env +veget=$veget +opt_veget="-v $veget_version" +orchidee_rev=$orchidee_rev +suforch=$suff_orc +EOF Index: /BOL/script_install_amaury/install_netcdf4_hdf5.bash =================================================================== --- /BOL/script_install_amaury/install_netcdf4_hdf5.bash (revision 4850) +++ /BOL/script_install_amaury/install_netcdf4_hdf5.bash (revision 4850) @@ -0,0 +1,173 @@ +#!/bin/bash +######################################################################### +# Defaults +######################################################################### +install_dir=$(pwd) +c_compiler=gcc +f_compiler=gfortran +cxx_compiler=g++ +mpi_home="/usr/lib64/openmpi" +######################################################################### +# Options +######################################################################### +while (($# > 0)) + do + case $1 in + "-h") cat <<........fin + $0 [ -prefix path ] where (path) to install + (default: $install_dir) + [ -CC compiler ] C compiler to use + (default: $c_compiler) + [ -FC compiler ] Fortran compiler to use + (default: $f_compiler) + [ -CXX compiler ] C++ compiler to use + (default: $cxx_compiler) + [ -MPI path ] top directory of the MPI library + (default: $mpi_home) +........fin + exit ;; + "-prefix") install_dir=$2 ; shift ; shift ;; + "-CC") c_compiler=$2 ; shift ; shift ;; + "-FC") f_compiler=$2 ; shift ; shift ;; + "-CXX") cxx_compiler=$2 ; shift ; shift ;; + "-MPI") mpi_home=$2 ; shift ; shift ;; + *) echo "Error, bad argument $1" ; $0 -h ; exit + esac +done + +# Install directory (get full path) +mkdir -p $install_dir +install_dir=$(cd $install_dir ; pwd -P ) + +# Install location for packages +mkdir -p $install_dir/src + +# CURL +APP=curl-7.26.0 +CURL_PATH=$install_dir/$APP +rm -rf $CURL_PATH +cd $install_dir/src +rm -rf curl-7.26.0* +wget -nv --no-check-certificate http://lmdz.lmd.jussieu.fr/pub/src_archives/netcdf/curl-7.26.0.tar.gz +tar xvf curl-7.26.0.tar.gz ; cd curl-7.26.0 +export CC=$c_compiler +./configure \ +--prefix=$install_dir | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make install 2>&1 | tee $APP.install.log + +# ZLIB +APP=zlib-1.2.8 +ZLIB_PATH=$install_dir/$APP +rm -rf $ZLIB_PATH +cd $install_dir/src +rm -rf zlib-1.2.8* +wget -nv --no-check-certificate http://lmdz.lmd.jussieu.fr/pub/src_archives/netcdf/zlib-1.2.8.tar.gz +tar zxf zlib-1.2.8.tar.gz ; cd zlib-1.2.8 +export CC=$c_compiler +export FC=$f_compiler +export CXX=$cxx_compiler +./configure \ +--prefix=$install_dir | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log + +# HDF5 +APP=hdf5-1.10.7 +HDF5_PATH=$install_dir/$APP +rm -rf $HDF5_PATH +cd $install_dir/src +rm -rf ${APP}* +wget -nv --no-check-certificate http://lmdz.lmd.jussieu.fr/pub/src_archives/netcdf/$APP.tar.gz +tar xzf $APP.tar.gz ; cd $APP +export PATH=$mpi_home/bin:$PATH +if [[ ${LD_LIBRARY_PATH} == '' ]] +then + export LD_LIBRARY_PATH=$mpi_home/lib +else + export LD_LIBRARY_PATH=$mpi_home/lib:${LD_LIBRARY_PATH} +fi +export CFLAGS="-I$mpi_home/include -m64" +export LDFLAGS="-L$mpi_home/lib -lmpi" +export MPI_BIN=$mpi_home/bin +export MPI_SYSCONFIG=$mpi_home/etc +export MPI_FORTRAN_MOD_DIR=$mpi_home/lib +export MPI_INCLUDE=$mpi_home/include +export MPI_LIB=$mpi_home/lib +export MPI_HOME=$mpi_home +export CC=mpicc +export FC=mpif90 +export CXX=mpiCC +./configure \ +--prefix=$install_dir \ +--enable-fortran \ +--enable-parallel \ +--with-zlib=$install_dir \ +--with-pic 2>&1 | tee $APP.config.log +make 2>&1 | tee $APP.make.log +#make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log + +# NetCDF4 +APP=netcdf-4.3.3.1 +NETCDF4_PATH=$install_dir/$APP +rm -rf $NETCDF4_PATH +cd $install_dir/src +rm -rf netcdf-4.3.3.1* +wget -nv --no-check-certificate http://lmdz.lmd.jussieu.fr/pub/src_archives/netcdf/netcdf-4.3.3.1.tar.gz +tar xzf netcdf-4.3.3.1.tar.gz ; cd netcdf-4.3.3.1 +export LDFLAGS="-L${install_dir}/lib -L${mpi_home}/lib -lmpi" +export CFLAGS="-I${install_dir}/include/curl -I${install_dir}/include" +export LD_LIBRARY_PATH="${install_dir}/lib:${LD_LIBRARY_PATH}" +CC=mpicc ./configure \ +--prefix=${install_dir} \ +--enable-static \ +--enable-shared \ +--enable-netcdf4 \ +--enable-dap \ +--with-pic 2>&1 | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log + +# NetCDF4-Fortran +APP=netcdf-fortran-4.4.2 +NETCDF4_FORTRAN_PATH=${install_dir}/$APP +rm -rf $NETCDF4_FORTRAN_PATH +cd ${install_dir}/src +rm -rf netcdf-fortran-4.4.2* +wget -nv --no-check-certificate http://lmdz.lmd.jussieu.fr/pub/src_archives/netcdf/netcdf-fortran-4.4.2.tar.gz +tar xzf netcdf-fortran-4.4.2.tar.gz ; cd netcdf-fortran-4.4.2 +#export LD_LIBRARY_PATH=${install_dir}/lib:${LD_LIBRARY_PATH} +export LDFLAGS="-L${install_dir}/lib -L${install_dir}/lib -L${mpi_home}/lib -lmpi" +export CPPFLAGS="-I${install_dir}/include/curl -I${install_dir}/include" +export CC=mpicc +export FC=mpif90 +export F77=mpif77 +export LDFLAGS=-L${install_dir}/lib +./configure \ +--prefix=${install_dir} 2>&1 | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log + +# NetCDF4-C++ +APP=netcdf-cxx4-4.2.1 +NETCDF4_CXX_PATH=${install_dir}/$APP +rm -rf $NETCDF4_CXX_PATH +cd ${install_dir}/src +rm -rf netcdf-cxx4-4.2.1* +wget -nv --no-check-certificate http://lmdz.lmd.jussieu.fr/pub/src_archives/netcdf/netcdf-cxx4-4.2.1.tar.gz +tar xzf netcdf-cxx4-4.2.1.tar.gz ; cd netcdf-cxx4-4.2.1 +#export LD_LIBRARY_PATH=${install_dir}/lib:${LD_LIBRARY_PATH} +export LDFLAGS="-L${install_dir}/lib -L${mpi_home}/lib -lmpi" +export CPPFLAGS="-I${install_dir}/include/curl -I${install_dir}/include" +export CC=mpicc +export CXX=mpiCC +export LDFLAGS=-L${install_dir}/lib +./configure \ +--prefix=${install_dir} 2>&1 | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log Index: /BOL/script_install_amaury/install_netcdf4_hdf5_seq.bash =================================================================== --- /BOL/script_install_amaury/install_netcdf4_hdf5_seq.bash (revision 4850) +++ /BOL/script_install_amaury/install_netcdf4_hdf5_seq.bash (revision 4850) @@ -0,0 +1,175 @@ +#!/bin/bash +######################################################################### +# Script to automatically install the HDF5 1.10.5, NetCDF 4.3.3.1 C library +# and the NetCDF 4.4.2 Fortran library +######################################################################### +# Defaults +######################################################################### +install_dir=$(pwd) +compiler_suite=gnu +######################################################################### +# Options +######################################################################### +while (($# > 0)) + do + case $1 in + "-h") cat <<........fin + $0 [ -prefix path ] where (path) to install + (default: $install_dir) + [ -compiler gnu | intel ] compiler suite (Fortran, C, C++) to use + (default: $compiler_suite) +........fin + exit ;; + "-prefix") install_dir=$2 ; shift ; shift ;; + "-compiler") compiler_suite=$2 ; shift ; shift ;; + *) echo "Error, bad argument $1" ; $0 -h ; exit + esac +done + +# Install directory (get full path) +mkdir -p $install_dir +install_dir=$(cd $install_dir ; pwd -P ) + +# Install location for packages +mkdir -p $install_dir/src + + +if [[ ${compiler_suite} == "gnu" ]] ; then + f_compiler="gfortran" + c_compiler="gcc" + cxx_compiler="g++" +elif [[ ${compiler_suite} == "intel" ]] ; then + f_compiler="ifort" + c_compiler="icc" + cxx_compiler="icpc" +else + echo "unknown compiler family $compiler_suite" + echo "might as well stop here" + exit +fi + +export FC=$f_compiler +export F90=$f_compiler +export CC=$c_compiler +export CXX=$cxx_compiler +allow_arg_mismatch="" +if [[ ${f_compiler} == "gfortran" ]] ; then + if [ `gfortran -dumpversion | cut -d. -f1` -ge 10 ] ; then + allow_arg_mismatch="-fallow-argument-mismatch" + fi + export FFLAGS=" -O2 -fPIC $allow_arg_mismatch" + export FCFLAGS="-O2 -ffree-form -fPIC $allow_arg_mismatch" + export CPPFLAGS="-I${install_dir}/include" + export CFLAGS="-O2 -fPIC" + export CXXFLAGS="-O2 -fPIC" +elif [[ ${f_compiler} == "ifort" ]] ; then + export CPP="icc -E" + export FFLAGS="-O2 -ip -fpic" + export FCFLAGS="-O2 -ip -fpic" + export CPPFLAGS="-I${install_dir}/include" + export CFLAGS="-O2 -ip -fpic" + export CXXFLAGS="-O2 -ip -fpic" +else + echo "unknown compiler $f_compiler" + echo "might as well stop here" + exit +fi + +#--------------------------------------------------------------------------- +function myget() { +\rm -f ${1}* +wget -nv --no-check-certificate https://lmdz.lmd.jussieu.fr/pub/src_archives/netcdf/$1.tar.gz +tar xvf $1.tar.gz +} +#--------------------------------------------------------------------------- + + +# CURL +APP=curl-7.26.0 +CURL_PATH=$install_dir/$APP +rm -rf $CURL_PATH +cd $install_dir/src +myget curl-7.26.0 +cd curl-7.26.0 +export CC=$c_compiler +./configure \ +--prefix=$install_dir | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make install 2>&1 | tee $APP.install.log + +# ZLIB +APP=zlib-1.2.8 +ZLIB_PATH=$install_dir/$APP +rm -rf $ZLIB_PATH +cd $install_dir/src +myget zlib-1.2.8 +cd zlib-1.2.8 +export CC=$c_compiler +export FC=$f_compiler +export CXX=$cxx_compiler +./configure \ +--prefix=$install_dir | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log + + +# HDF5 +APP=hdf5-1.10.5 +HDF5_PATH=$install_dir/$APP +rm -rf $HDF5_PATH +cd $install_dir/src +rm -rf hdf5-1.10.5* +wget -nv --no-check-certificate https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.gz +tar xzf hdf5-1.10.5.tar.gz ; cd hdf5-1.10.5 +export CC=$c_compiler +export FC=$f_compiler +export CXX=$cxx_compiler +./configure \ +--prefix=$install_dir \ +--enable-fortran \ +--with-zlib=$install_dir \ +--with-pic 2>&1 | tee $APP.config.log +make 2>&1 | tee $APP.make.log +#make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log + +# NetCDF4 +APP=netcdf-4.3.3.1 +NETCDF4_PATH=$install_dir/$APP +rm -rf $NETCDF4_PATH +cd $install_dir/src +myget netcdf-4.3.3.1 +cd netcdf-4.3.3.1 +export LDFLAGS="-L${install_dir}/lib" +export CFLAGS="-I${install_dir}/include/curl -I${install_dir}/include" +export LD_LIBRARY_PATH="${install_dir}/lib:${LD_LIBRARY_PATH}" +./configure \ +--prefix=${install_dir} \ +--enable-static \ +--enable-shared \ +--enable-netcdf4 \ +--enable-dap \ +--with-pic 2>&1 | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log + +# NetCDF4-Fortran +APP=netcdf-fortran-4.4.2 +NETCDF4_FORTRAN_PATH=${install_dir}/$APP +rm -rf $NETCDF4_FORTRAN_PATH +cd ${install_dir}/src +myget netcdf-fortran-4.4.2 +cd netcdf-fortran-4.4.2 +export LDFLAGS=-L${install_dir}/lib +./configure \ +--prefix=${install_dir} 2>&1 | tee $APP.config.log +make 2>&1 | tee $APP.make.log +make check 2>&1 | tee $APP.make_check.log +make install 2>&1 | tee $APP.install.log + + +if [[ -f $install_dir/bin/nf-config ]] ; then + echo "successfully installed the netcdf library in $install_dir" +fi Index: /BOL/script_install_amaury/install_ubuntu22_packages.sh =================================================================== --- /BOL/script_install_amaury/install_ubuntu22_packages.sh (revision 4850) +++ /BOL/script_install_amaury/install_ubuntu22_packages.sh (revision 4850) @@ -0,0 +1,194 @@ +#!/bin/bash + +################################################################ +# Complément d'installation Ubuntu22 +# Frédéric Hourdin. +# +# Developpe et utilise a fins personnelles et pour les PCs +# enseignement. +# Permet de faire tourner entre autres LMDZ et les outils HighTune +################################################################ + +base=1 +compilation=1 +hightune=1 +bureautique=1 +latex=1 +graphique=1 +ferret=1 +system=1 +son=0 +acroread=1 +workspace_matrix=0 +miniconda=1 +panoply=1 +cours_m2=1 + +install="sudo apt install -y" +sudo apt update +sudo apt upgrade + +#=============================================================================== +if [ $base = 1 ] ; then + # Base : + # ====== + $install locate + $install ncftp vim nfs-common + # keychain semble etre devenu obsolete. + # ksh et csh inutile ? + for file in /home/*/.bashrc ; do + cat >> $file <<........eod + alias rm='rm -i' + alias cp='cp -i' + alias mv='mv -i' +........eod + done +fi +#=============================================================================== +if [ $compilation = 1 ] ; then + # Pour compilation dont LMDZ + # ========================== + $install cdo nco netcdf-bin libnetcdf-dev libnetcdff-dev ncview # netcdf + $install gfortran g++ libblas-dev subversion git git-lfs # fortran et svn + $install openmpi-common libopenmpi-dev openmpi-bin # openmpi + $install make cmake +fi +#=============================================================================== +if [ $hightune = 1 ] ; then + # Pour HitghTune + # ============== + $install r-base + $install pip + $install python3-pip +fi +#=============================================================================== +if [ $bureautique = 1 ] ; then + # bureautique + # =========== + $install xournal + $install unoconv # conversion associee a libreoffice + $install dos2unix + $install qpdfview # un visualiseur remplissant mieux les pdf + $install pdftk # Autre package de concatenation de pdf + $install chromium-browser + $install pandoc # markdown +fi +#=============================================================================== +if [ $latex = 1 ] ; then + # LaTeX dont pdfjam + # ================= + $install texlive-base texlive-latex-extra texlive-lang-french latexdiff texlive-publishers + $install latexmk texlive-science + $install latex2html + $install texlive-extra-utils texlive-font-utils # pdfjam +fi +#=============================================================================== +if [ $graphique = 1 ] ; then + # graphique / video + # ================= + $install xfig grads imagemagick gv grace # graphique + $install inkscape gimp # dessin + $install gifsicle + $install ffmpeg + $install winff # autre convertisseur video +fi +#=============================================================================== +if [ $ferret = 1 ] ; then + $install ferret-vis ferret-datasets + # Finalisation de l'installation de ferret-vis + # ============================================ + # Active le bon environnement pour ferret + # Attention, pour que ca fonctionne completement (notamment le trace + # des frontieres) il manque des données. + # Pour le moment, on va chercher ces données dans le répertoire de + # l'installation conda. On a donc une double installation + for file in /home/*/.bashrc ; do + sed -i'' -e '/ferret-vis/d' $file + cat <<........eod>> $file + . /usr/share/ferret-vis/bin/ferret_paths # ferret-vis + alias ferret=ferret_c + export FER_DATA=". \$FER_DATA" +........eod + done + cd /tmp + wget http://www.lmd.jussieu.fr/~lmdz/data_ferret.tar + cd /usr/share/ferret-vis + sudo tar xvf /tmp/data_ferret.tar +fi +#=============================================================================== +if [ $system = 1 ] ; then + # Outils systeme / collaboratifs + # ============================== + $install traceroute # aide systeme + $install synaptic gdebi # install paquets + $install tmate +fi +#=============================================================================== +if [ $son = 1 ] ; then + # Son + #===== + $install audacity +fi +#=============================================================================== +if [ $acroread = 1 ] ; then + # Acroread + # ======== + sudo dpkg --add-architecture i386 + $install libxml2:i386 libcanberra-gtk-module:i386 gtk2-engines-murrine:i386 + $install libatk-adaptor:i386 libgdk-pixbuf2.0-0:i386 + wget -O /tmp/adobe.deb ftp://ftp.adobe.com/pub/adobe/reader/unix/9.x/9.5.5/enu/AdbeRdr9.5.5-1_i386linux_enu.deb + sudo dpkg -i /tmp/adobe.deb +fi +#=============================================================================== +if [ $workspace_matrix = 1 ] ; then + # Firefox + # ======= + # Reinstallation d’une version de firefox pour permettre le multigrille + # https://ubuntuhandbook.org/index.php/2022/04/install-firefox-deb-ubuntu-22-04/ + sudo snap remove firefox + sudo apt remove firefox + sudo add-apt-repository ppa:mozillateam/ppa + sudo cat <<....eod> /tmp/mozillateamppa + Package: firefox* + Pin: release o=LP-PPA-mozillateam + Pin-Priority: 501 +....eod + sudo cp /tmp/mozillateamppa /etc/apt/preferences.d/ + sudo apt install -y chrome-gnome-shell + sudo apt install -y firefox + + echo Run firefox https://extensions.gnome.org/extension/1485/workspace-matrix/ + echo first clicks in the top frame, install gnome extension, or so. + echo then reload browser + echo then click on the OFF button +fi + +#=============================================================================== +if [ $miniconda = 1 ] ; then + cd /tmp + wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh + cd + # Option -b pour installer sans repondre aux droits + bash /tmp/Miniconda3-latest-Linux-x86_64.sh -b + export PATH=~/miniconda3/bin:$PATH + conda activater ; conda init ; conda deactivate + #conda init --reverse bash + conda create -n FERRET -c conda-forge pyferret ferret_datasets --yes + \rm -f Miniconda3-latest-Linux-x86_64.sh + wget http://www.lmd.jussieu.fr/~hourdin/COURS/UTILS/environment.yaml + if [ $cours_m2 ] ; then + conda env create -f environment.yaml + \rm -f environment.yaml + fi +fi + +#=============================================================================== +if [ $panoply = 1 ] ; then + cd + sudo apt-get install openjdk-11-jre + wget https://www.giss.nasa.gov/tools/panoply/download/PanoplyJ-5.3.0.tgz + tar xvzf PanoplyJ-5.3.0.tgz + \rm -f PanoplyJ-5.3.0.tgz + cd PanoplyJ/ + # ./panoply.sh devrait ouvrir la fenêtre Panoply +fi Index: /BOL/script_install_amaury/install_xios.bash =================================================================== --- /BOL/script_install_amaury/install_xios.bash (revision 4850) +++ /BOL/script_install_amaury/install_xios.bash (revision 4850) @@ -0,0 +1,129 @@ +#!/bin/bash +######################################################################### +# Defaults +######################################################################### +hostname=`hostname` +install_dir=$(pwd) +netcdf_home="/usr/local/netcdf" +hdf5_home="/usr/local/hdf5" +if [ -d /usr/lib64/openmpi ] ; then + mpi_home="/usr/lib64/openmpi" +else + mpi_home="/usr" +fi +arch="local" +#xios_branch="trunk" +xios_branch="2.6" +#xios_rev="HEAD" +xios_rev="2568" + +######################################################################### +# Options +######################################################################### +while (($# > 0)) + do + case $1 in + "-h") cat <<........fin + $0 [ -prefix path ] where (path) to install + (default: $install_dir) + [ -netcdf path ] top directory of the netcdf library + (default: $netcdf_home) + [ -hdf5 path ] top directory of the hdf5 library + (default: $hdf5_home) + [ -MPI path ] top directory of the MPI library + (default: $mpi_home) + [ -branch branch] XIOS branch trunk|2.5|2.6 + (default: $xios_branch) + [ -rev number ] XIOS revision + (default: $xios_rev) + [ -arch ARCH ] Use ARCH file (provided by XIOS) + (default: make/use a local arch file) +........fin + exit ;; + "-prefix") install_dir=$2 ; shift ; shift ;; + "-netcdf") netcdf_home=$2 ; shift ; shift ;; + "-hdf5" ) hdf5_home=$2 ; shift ; shift ;; + "-MPI") mpi_home=$2 ; shift ; shift ;; + "-branch") xios_branch=$2 ; shift ; shift ;; + "-rev") xios_rev=$2 ; shift ; shift ;; + "-arch") arch=$2 ; shift ; shift ;; + *) echo "Error, bad argument $1" ; $0 -h ; exit + esac +done + +# Install directory (get full path) +mkdir -p $install_dir +install_dir=$(cd $install_dir ; pwd -P ) + +# Download XIOS +case $xios_branch in + "trunk") + xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/trunk" ;; + "2.5") + xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-2.5" ;; + "2.6") + xios_http="http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS2/branches/xios-2.6" ;; +*) +echo "Error, bad argument for -branch ! Did not expect $xios_branch" ; exit ;; +esac + +cd $install_dir +svn co --revision $xios_rev $xios_http XIOS + +# Make arch files, if necesary: +if [ "$arch" = "local" ] ; then +cd $install_dir/XIOS/arch +# arch-local.env +echo 'export MPI_LIB="-L'${mpi_home}'/lib -lmpi"' > arch-local.env +echo '' >> arch-local.env +echo 'export NETCDFC='${netcdf_home} >> arch-local.env +echo 'export NETCDFC_LIB=$NETCDFC/lib' >> arch-local.env +echo 'export NETCDFC_INC=$NETCDFC/include' >> arch-local.env +echo '' >> arch-local.env +echo 'export NETCDFF='${netcdf_home} >> arch-local.env +echo 'export NETCDFF_LIB=$NETCDFF/lib' >> arch-local.env +echo 'export NETCDFF_INC=$NETCDFF/include' >> arch-local.env +echo '' >> arch-local.env +echo 'export NETCDFCXX='${netcdf_home} >> arch-local.env +echo 'export NETCDFCXX_LIB=$NETCDFCXX/lib' >> arch-local.env +echo 'export NETCDFCXX_INC=$NETCDFCXX/include' >> arch-local.env + +# arch-local.fcm +echo '%CCOMPILER '${mpi_home}'/bin/mpicc' > arch-local.fcm +echo '%FCOMPILER '${mpi_home}'/bin/mpif90' >> arch-local.fcm +echo '%LINKER '${mpi_home}'/bin/mpif90' >> arch-local.fcm +echo '' >> arch-local.fcm +if [ ${hostname:0:5} = cicla ] ; then +echo '%BASE_CFLAGS -w -ansi' >> arch-local.fcm +else +echo '%BASE_CFLAGS -w -std=c++11 -D__XIOS_EXCEPTION' >> arch-local.fcm +fi +echo '%PROD_CFLAGS -O3 -D BOOST_DISABLE_ASSERTS' >> arch-local.fcm +echo '%DEV_CFLAGS -g -O2' >> arch-local.fcm +echo '%DEBUG_CFLAGS -g -DBZ_DEBUG' >> arch-local.fcm +echo '' >> arch-local.fcm +echo '%BASE_FFLAGS -D__NONE__ -ffree-line-length-none' >> arch-local.fcm +echo '%PROD_FFLAGS -O3' >> arch-local.fcm +echo '%DEV_FFLAGS -g -O2' >> arch-local.fcm +echo '%DEBUG_FFLAGS -g' >> arch-local.fcm +echo '' >> arch-local.fcm +echo '%BASE_INC -D__NONE__' >> arch-local.fcm +echo '%BASE_LD -lstdc++ -Wl,-rpath='${mpi_home}'/lib' >> arch-local.fcm +echo '' >> arch-local.fcm +echo '%CPP '${mpi_home}'/bin/mpicc -EP' >> arch-local.fcm +echo '%FPP cpp -P' >> arch-local.fcm +echo '%MAKE make' >> arch-local.fcm + +# arch-local.path +echo 'NETCDF_INCDIR="-I${NETCDFC_INC} -I${NETCDFF_INC} -I${NETCDFCXX_INC} "' > arch-local.path +echo 'NETCDF_LIBDIR="-L${NETCDFC_LIB} -L${NETCDFF_LIB} -L${NETCDFCXX_LIB} "' >> arch-local.path +echo 'NETCDF_LIB="-lnetcdf -lnetcdff -lnetcdf_c++4"' >> arch-local.path +echo 'HDF5_INCDIR="-I'${hdf5_home}'/include"' >> arch-local.path +echo 'HDF5_LIBDIR="-L'${hdf5_home}'/lib"' >> arch-local.path +echo 'HDF5_LIB="-lhdf5_hl -lhdf5 -lhdf5 -lz -lcurl"' >> arch-local.path +fi + +# make XIOS +cd $install_dir/XIOS +./make_xios --arch $arch --job 8 2>&1 | tee make_xios.out + Index: /BOL/script_install_amaury/verif_commit.sh =================================================================== --- /BOL/script_install_amaury/verif_commit.sh (revision 4850) +++ /BOL/script_install_amaury/verif_commit.sh (revision 4850) @@ -0,0 +1,68 @@ +#!/bin/bash +# +# Lancement d'un install_lmdz.sh immédiatement apres un commit +# pour tester la compilation et l'execution. Retour d'un code erreur adequat +# au serveur svn pour notifier qui de droit + +set -vx + +REV="$1" + +TMP_OUT=/u/lmdz/WWW/Distrib/OUT +TMP_D=/tmp/lmdz/test_rev_${REV}_$$ ; mkdir -p $TMP_D + +resolution=48x36x39 +physiq=NPv6.0.14splith +# Changed on 15/03/2023 r4473 +physiq=NPv6.3 + +cd $TMP_D +cp /u/lmdz/WWW/pub/install_lmdz.sh . +#chmod 755 /u/lmdz/WWW/pub/install_lmdz.sh +chmod +x install_lmdz.sh +#./install_lmdz.sh -SCM -unstable -debug -d $resolution -r $REV -physiq $physiq > ${TMP_OUT}/post-commit-lmdz-cq-${REV}_$$ 2>&1 +./install_lmdz.sh -SCM -unstable -debug -d $resolution -r $REV -netcdf /u/lmdz/Netcdf/lmdz-cq_gcc_8.3.0/ -rad oldrad -parallel mpi_omp -physiq $physiq \ + > ${TMP_OUT}/post-commit-lmdz-cq-${REV}_$$ 2>&1 +# +# menage: si ca a marche on efface le repertoire dans /tmp/lmdz +# +grep 'Everything is cool' ${TMP_OUT}/post-commit-lmdz-cq-${REV}_$$ +RET=$? +# checking 1D results +cd LMDZ*${REV}*/1D/EXEC/6AL79/ +listecas="ARMCU/REF RICO/SHORT SANDU/REF" +((ret1d=0)) +for cas in $listecas ; do + ((ret1d=$ret1d*10)) + gunzip -dc "$cas"/listing.gz |grep -i cool + retcas=$? + ((ret1d=$ret1d+$retcas)) +done +# checking isotope compilation +cd $TMP_D +cd LMDZ*${REV}*/modipsl/modeles/LMDZ/ +./makelmdz_fcm -debug -arch local -j 8 -rad rrtm -d $resolution -v false -p lmdiso -isotopes true -isoverif true gcm > ./compile_iso.out 2>&1 +ls bin/*iso* +retiso=$? + +if [ ${RET} -eq 0 ] && [ ${ret1d} -eq 0 ] && [ ${retiso} -eq 0 ] ; then + echo "Everything is cool for revision ${REV}" >> ${TMP_OUT}/post-commit-lmdz-cq-${REV}_$$ + echo "Cleaning up /tmp/lmdz/test_rev_${REV}_$$" >> ${TMP_OUT}/post-commit-lmdz-cq-${REV}_$$ + \rm -rf /tmp/lmdz/test_rev_${REV}_$$ +fi +# +# sorties retour nécessaires pour envoyer le message a la liste +# +echo "Sortie dans" ${TMP_OUT}/post-commit-lmdz-cq-${REV}_$$ +if [ ${RET} -eq 0 ] ; then + echo "Bench 3D ok" +fi +if [ ${ret1d} -eq 0 ] ; then + echo "Bench 1D ok" +fi +if [ ${retiso} -eq 0 ] ; then + echo "Compilation iso ok" +fi + +#grep 'Everything is cool' ${TMP_OUT}/post-commit-lmdz-cq-${REV}_$$ +exit