Index: BOL/script_install/install_netcdf4_hdf5_seq.bash
===================================================================
--- BOL/script_install/install_netcdf4_hdf5_seq.bash	(revision 4382)
+++ BOL/script_install/install_netcdf4_hdf5_seq.bash	(revision 4382)
@@ -0,0 +1,180 @@
+#!/bin/bash 
+#########################################################################
+# Script to automatically install the HDF5 1.10.5, NetCDF 4.3.3.1 C library
+#  and the NetCDF 4.4.2 Fortran library
+#########################################################################
+# Defaults
+#########################################################################
+install_dir=$(pwd)
+compiler_suite=gnu
+#########################################################################
+#  Options 
+#########################################################################
+while (($# > 0))
+   do
+   case $1 in
+     "-h") cat <<........fin
+    $0 [ -prefix path ]       where (path) to install
+                              (default: $install_dir)
+       [ -compiler gnu | intel ] compiler suite (Fortran, C, C++) to use
+                              (default: $compiler_suite)
+........fin
+     exit ;;
+     "-prefix") install_dir=$2 ; shift ; shift ;;
+     "-compiler") compiler_suite=$2 ; shift ; shift ;;
+     *) echo "Error, bad argument $1" ; $0 -h ; exit
+   esac
+done
+
+# Install directory (get full path)
+mkdir -p $install_dir
+install_dir=$(cd $install_dir ; pwd -P )
+
+# Install location for packages
+mkdir -p $install_dir/src
+
+
+if [[ ${compiler_suite} == "gnu" ]] ; then
+  f_compiler="gfortran"
+  c_compiler="gcc"
+  cxx_compiler="g++"
+elif [[ ${compiler_suite} == "intel" ]] ; then
+  f_compiler="ifort"
+  c_compiler="icc"
+  cxx_compiler="icpc"
+else
+  echo "unknown compiler family $compiler_suite"
+  echo "might as well stop here"
+  exit
+fi
+
+export FC=$f_compiler
+export F90=$f_compiler
+export CC=$c_compiler
+export CXX=$cxx_compiler
+allow_arg_mismatch=""
+if [[ ${f_compiler} == "gfortran" ]] ; then
+  if [ `gfortran -dumpversion | cut -d. -f1` -ge 11 ] ; then 
+    allow_arg_mismatch="-fallow-argument-mismatch" 
+  fi
+  export FFLAGS=" -O2 -fPIC $allow_arg_mismatch"
+  export FCFLAGS="-O2 -ffree-form -fPIC $allow_arg_mismatch"
+  export CPPFLAGS="-I${install_dir}/include"
+  export CFLAGS="-O2 -fPIC"
+  export CXXFLAGS="-O2 -fPIC"
+elif [[ ${f_compiler} == "ifort" ]] ; then
+  export CPP="icc -E"
+  export FFLAGS="-O2 -ip -fpic"
+  export FCFLAGS="-O2 -ip -fpic"
+  export CPPFLAGS="-I${install_dir}/include"
+  export CFLAGS="-O2 -ip -fpic"
+  export CXXFLAGS="-O2 -ip -fpic"
+else
+  echo "unknown compiler $f_compiler"
+  echo "might as well stop here"
+  exit
+fi
+
+#---------------------------------------------------------------------------
+function myget() {
+\rm -f ${1}*
+wget -nv --no-check-certificate https://lmdz.lmd.jussieu.fr/Distrib/$1.tar.gz
+tar xvf $1.tar.gz
+}
+#---------------------------------------------------------------------------
+
+
+# CURL
+APP=curl-7.26.0
+CURL_PATH=$install_dir/$APP
+rm -rf $CURL_PATH 
+cd $install_dir/src 
+#wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/curl-7.26.0.tar.gz
+myget curl-7.26.0
+cd    curl-7.26.0
+export CC=$c_compiler
+./configure \
+--prefix=$install_dir | tee $APP.config.log
+make 2>&1 | tee $APP.make.log
+make install 2>&1 | tee $APP.install.log
+
+# ZLIB
+APP=zlib-1.2.8
+ZLIB_PATH=$install_dir/$APP 
+rm -rf $ZLIB_PATH 
+cd $install_dir/src 
+#wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/zlib-1.2.8.tar.gz
+myget zlib-1.2.8
+cd    zlib-1.2.8
+export CC=$c_compiler
+export FC=$f_compiler
+export CXX=$cxx_compiler 
+./configure \
+--prefix=$install_dir | tee $APP.config.log
+make 2>&1 | tee $APP.make.log
+make check 2>&1 | tee $APP.make_check.log
+make install 2>&1 | tee $APP.install.log
+
+
+# HDF5
+APP=hdf5-1.10.5
+HDF5_PATH=$install_dir/$APP 
+rm -rf $HDF5_PATH 
+cd $install_dir/src 
+rm -rf hdf5-1.10.5* 
+#wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4/hdf5-1.8.13.tar.gz
+#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/hdf5-1.8.13.tar.gz
+wget -nv --no-check-certificate https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.gz
+tar xzf hdf5-1.10.5.tar.gz ; cd hdf5-1.10.5
+export CC=$c_compiler
+export FC=$f_compiler
+export CXX=$cxx_compiler 
+./configure \
+--prefix=$install_dir \
+--enable-fortran \
+--with-zlib=$install_dir  \
+--with-pic 2>&1 | tee $APP.config.log
+make 2>&1 | tee $APP.make.log
+#make check 2>&1 | tee $APP.make_check.log
+make install 2>&1 | tee $APP.install.log
+
+# NetCDF4
+APP=netcdf-4.3.3.1
+NETCDF4_PATH=$install_dir/$APP
+rm -rf $NETCDF4_PATH 
+cd $install_dir/src 
+myget netcdf-4.3.3.1 
+cd    netcdf-4.3.3.1
+export LDFLAGS="-L${install_dir}/lib"
+export CFLAGS="-I${install_dir}/include/curl -I${install_dir}/include"
+export LD_LIBRARY_PATH="${install_dir}/lib:${LD_LIBRARY_PATH}"
+./configure \
+--prefix=${install_dir} \
+--enable-static \
+--enable-shared \
+--enable-netcdf4 \
+--enable-dap \
+--with-pic 2>&1 | tee $APP.config.log
+make 2>&1 | tee $APP.make.log
+make check 2>&1 | tee $APP.make_check.log
+make install 2>&1 | tee $APP.install.log
+
+# NetCDF4-Fortran
+APP=netcdf-fortran-4.4.2
+NETCDF4_FORTRAN_PATH=${install_dir}/$APP
+rm -rf $NETCDF4_FORTRAN_PATH
+cd ${install_dir}/src 
+#wget ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-fortran-4.4.2.tar.gz
+myget netcdf-fortran-4.4.2
+cd    netcdf-fortran-4.4.2
+export LDFLAGS=-L${install_dir}/lib 
+./configure \
+--prefix=${install_dir} 2>&1 | tee $APP.config.log
+make 2>&1 | tee $APP.make.log
+make check 2>&1 | tee $APP.make_check.log
+make install 2>&1 | tee $APP.install.log
+
+
+if [[ -f $install_dir/bin/nf-config ]] ; then
+  echo "successfully installed the netcdf library in $install_dir"
+fi