Changeset 3696 for BOL/Multi_atlas
- Timestamp:
- Jun 5, 2020, 1:23:26 PM (5 years ago)
- Location:
- BOL/Multi_atlas
- Files:
-
- 5 edited
Legend:
- Unmodified
- Added
- Removed
-
BOL/Multi_atlas/Utils/atlas0.sh
r3694 r3696 1 # Definitions en fonction de la machine 2 # CICLAD 3 if [ ${hostname:0:5} = cicla ] ; then 4 ######################################################################################################## 5 # Environnement 6 module purge 7 module load netcdf4/4.3.3.1-ifort cdo/1.6.8 nco/4.5.2 ncl/6.3.0 8 ulimit -s unlimited 9 export PYTHONPATH=:/opt/canopy-1.3.0/Canopy_64bit/User/bin/python:/home/igcmg/prodiguer-client:/home/fabric/users/denvil/climaf:/home/fabric/users/denvil/climaf 10 export PATH=$PATH:/home/fabric/users/denvil/climaf/bin 11 STORAGE=$DODSDIR/$login/lmdz/STORE 12 if [ ! -d $DODSDIR/$login/climafCache ] ; then mkdir -p $DODSDIR/$login/climafCache ; fi 13 export CLIMAF_CACHE=$DODSDIR/$login/climafCache 14 echo CLIMAF_CACHE $DODSDIR/$login/climafCache 15 MULTIDIR=$DODSDIR/$login/lmdz/MultiSimu 16 DIRATLAS=$DODSDIR/$login/lmdz/atlas 17 ######################################################################################################## 18 ATLAS_DIR=$DODSDIR/$login/lmdz/atlas/Atlas$$ 19 if [ ! -d $DODSDIR/$login/lmdz/atlas/Atlas$$ ] ; then mkdir -p $DODSDIR/$login/lmdz/atlas/Atlas$$ ; fi 20 fi 1 21 local=`pwd -P` 2 22 -
BOL/Multi_atlas/atlas/atlas.sh
r3695 r3696 14 14 login=aidelkad 15 15 DODSDIR=/prodigfs/ipslfs/dods 16 # Definitions en fonction de la machine 17 # CICLAD 18 if [ ${hostname:0:5} = cicla ] ; then 16 19 ######################################################################################################## 17 20 # Environnement 18 module list19 which python 21 module purge 22 module load netcdf4/4.3.3.1-ifort cdo/1.6.8 nco/4.5.2 ncl/6.3.0 20 23 ulimit -s unlimited 21 export PYTHONPATH=:/data/aidelkad/climaf:/home/igcmg/prodiguer-client:/home/fabric/users/denvil/climaf 22 export PATH=/opt/glite/globus/bin:.:/home/sdipsl/CONFIG_MC2/MAKE_CONF:/opt/anaconda/bin:/opt/nco-4.5.2/bin:/opt/netcdf43/gfortran/bin:/opt/ferret-6.7.2/fast:/opt/ferret-6.7.2/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/home/aidelkad/bin:/home/fabric/users/denvil/climaf/bin 23 STORAGE=/prodigfs/ipslfs/dods/aidelkad/lmdz/STORE 24 if [ ! -d /prodigfs/ipslfs/dods/aidelkad/climafCache ] ; then mkdir -p /prodigfs/ipslfs/dods/aidelkad/climafCache ; fi 25 export CLIMAF_CACHE=/prodigfs/ipslfs/dods/aidelkad/climafCache 26 echo CLIMAF_CACHE 27 MULTIDIR=/prodigfs/ipslfs/dods/aidelkad/lmdz/MultiSimu 28 DIRATLAS=/prodigfs/ipslfs/dods/aidelkad/lmdz/atlas 29 ATLAS_DIR=/prodigfs/ipslfs/dods/aidelkad/lmdz/atlas/Atlas60546 30 if [ ! -d /prodigfs/ipslfs/dods/aidelkad/lmdz/atlas/Atlas60546 ] ; then mkdir -p /prodigfs/ipslfs/dods/aidelkad/lmdz/atlas/Atlas60546 ; fi 24 export PYTHONPATH=:/opt/canopy-1.3.0/Canopy_64bit/User/bin/python:/home/igcmg/prodiguer-client:/home/fabric/users/denvil/climaf:/home/fabric/users/denvil/climaf 25 export PATH=$PATH:/home/fabric/users/denvil/climaf/bin 26 STORAGE=$DODSDIR/$login/lmdz/STORE 27 if [ ! -d $DODSDIR/$login/climafCache ] ; then mkdir -p $DODSDIR/$login/climafCache ; fi 28 export CLIMAF_CACHE=$DODSDIR/$login/climafCache 29 echo CLIMAF_CACHE $DODSDIR/$login/climafCache 30 MULTIDIR=$DODSDIR/$login/lmdz/MultiSimu 31 DIRATLAS=$DODSDIR/$login/lmdz/atlas 31 32 ######################################################################################################## 33 ATLAS_DIR=$DODSDIR/$login/lmdz/atlas/Atlas$$ 34 if [ ! -d $DODSDIR/$login/lmdz/atlas/Atlas$$ ] ; then mkdir -p $DODSDIR/$login/lmdz/atlas/Atlas$$ ; fi 35 fi 36 32 37 local=`pwd -P` 33 38 -
BOL/Multi_atlas/atlas/climaf.log
r3684 r3696 2 2 error : 'defining curves : command ncl is not executable' 3 3 warning : Binary cdftools not found. Some operators won't work 4 info : Object found in cache: space_average(regrid(time_average(ds('SE|LmdzOrAPctrl| tas|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc'))) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/2e809/60ca4/a6900/3416f/9cbdd/51dd6/f851e.nc:5 info : Object found in cache: space_average(regrid(time_average(ds('OBS.N/A. tas.fx.global./prodigfs/ipslfs/dods/fabric/lmdz/SE/CMOR/OBS')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc'))) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/e8033/04eea/4414d/3e659/92372/d8f56/8f4a3.nc:6 info : Object found in cache: space_average(minus(regrid(time_average(ds('SE|LmdzOrAPctrl| tas|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')),regrid(time_average(ds('OBS.N/A.tas.fx.global./prodigfs/ipslfs/dods/fabric/lmdz/SE/CMOR/OBS')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')))) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/4433d/70850/eded1/fd7de/a5106/2fd6f/05d22.nc:7 info : Object found in cache: space_average(ccdo(minus(regrid(time_average(ds('SE|LmdzOrAPctrl| tas|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')),regrid(time_average(ds('OBS.N/A.tas.fx.global./prodigfs/ipslfs/dods/fabric/lmdz/SE/CMOR/OBS')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc'))),operator='-b F64 sqr')) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/129ad/2ce03/97707/5194b/0589a/c2867/806cb.nc:8 info : nothing relevant found in cache for plot(regrid(time_average(ds('SE|LmdzOrAPctrl| tas|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')),color='BlueWhiteOrangeRed',colors='-60 -50 -40 -35 -30 -25 -20 -15 -10 -6 0 6 10 14 18 22 26 24 27 28 30',contours=1,gsnCenterString='LmdzOrAPctrl_1980_1999',gsnLeftString='tas',gsnRightString='YEAR',gsnStringFontHeightF=0.018,mpCenterLonF=0,offset=-273.15,title='',units='degC')9 info : Object found in cache: regrid(time_average(ds('SE|LmdzOrAPctrl| tas|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/ee57e/55c6b/5594a/71b45/63421/060ae/a87a5.nc:10 info : Launching command:(ncl -Q /home/fabric/users/denvil/climaf/climaf/../scripts/gplot.ncl main_file='"/prodigfs/ipslfs/dods/aidelkad/climafCache/ ee57e/55c6b/5594a/71b45/63421/060ae/a87a5.nc"' plotname='"/prodigfs/ipslfs/dods/aidelkad/climafCache/df7a1/f9fb2/369d2/40fb7/acc48/81558/26fd8.png"' cmap='"BlueWhiteOrangeRed"' main_var='"tas"' title='""' myoffset=-273.15 mpCenterLonF=0 units='"degC"' colors='"-60 -50 -40 -35 -30 -25 -20 -15 -10 -6 0 6 10 14 18 22 26 24 27 28 30"' contours='"1"' gsnLeftString='"tas"' gsnRightString='"YEAR"' gsnCenterString='"LmdzOrAPctrl_1980_1999"' gsnStringFontHeightF=0.018 )4 info : Object found in cache: space_average(regrid(time_average(ds('SE|LmdzOrAPctrl|pr|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc'))) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/bf4b6/7e35d/350bc/75bbe/78ff9/be6a6/37533.nc: 5 info : Object found in cache: space_average(regrid(time_average(ds('OBS.N/A.pr.fx.global./prodigfs/ipslfs/dods/fabric/lmdz/SE/CMOR/OBS')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc'))) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/4b0ec/401a8/6ffc4/41cc0/06646/0f9f8/0faf3.nc: 6 info : Object found in cache: space_average(minus(regrid(time_average(ds('SE|LmdzOrAPctrl|pr|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')),regrid(time_average(ds('OBS.N/A.pr.fx.global./prodigfs/ipslfs/dods/fabric/lmdz/SE/CMOR/OBS')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')))) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/2913a/98e70/28754/2429b/5a29a/e709e/d6ade.nc: 7 info : Object found in cache: space_average(ccdo(minus(regrid(time_average(ds('SE|LmdzOrAPctrl|pr|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')),regrid(time_average(ds('OBS.N/A.pr.fx.global./prodigfs/ipslfs/dods/fabric/lmdz/SE/CMOR/OBS')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc'))),operator='-b F64 sqr')) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/8a82c/45e2b/16097/d9e4f/79406/5def7/aca4d.nc: 8 info : nothing relevant found in cache for plot(regrid(time_average(ds('SE|LmdzOrAPctrl|pr|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')),color='precip_11lev',colors='0.5 1 2 3 4 6 8 10 12 14',contours=1,gsnCenterString='LmdzOrAPctrl_1980_1999',gsnLeftString='pr',gsnRightString='YEAR',gsnStringFontHeightF=0.018,mpCenterLonF=0,scale=86400.0,title='') 9 info : Object found in cache: regrid(time_average(ds('SE|LmdzOrAPctrl|pr|fx|global|seasonnal|1980_1999|/prodigfs/ipslfs/dods/fabric/lmdz/SE/ORIG')),ds('file|VLR|hurs|fx|global|no_model|/data/ssenesi/stable/VLR.nc')) is at /prodigfs/ipslfs/dods/aidelkad/climafCache/c73b8/3bbce/0a42b/9cdec/3ea7c/75037/4de99.nc: 10 info : Launching command:(ncl -Q /home/fabric/users/denvil/climaf/climaf/../scripts/gplot.ncl main_file='"/prodigfs/ipslfs/dods/aidelkad/climafCache/c73b8/3bbce/0a42b/9cdec/3ea7c/75037/4de99.nc"' plotname='"/prodigfs/ipslfs/dods/aidelkad/climafCache/f800c/d889b/aeec8/05e64/53b4f/71339/3c8e8.png"' cmap='"precip_11lev"' main_var='"pr"' title='""' myscale=86400.0 mpCenterLonF=0 colors='"0.5 1 2 3 4 6 8 10 12 14"' contours='"1"' gsnLeftString='"pr"' gsnRightString='"YEAR"' gsnCenterString='"LmdzOrAPctrl_1980_1999"' gsnStringFontHeightF=0.018 ) 11 11 error : Last lines of script output: 12 12 13 13 14 14 stdout and stderr of script call : 15 (ncl -Q /home/fabric/users/denvil/climaf/climaf/../scripts/gplot.ncl main_file='"/prodigfs/ipslfs/dods/aidelkad/climafCache/ ee57e/55c6b/5594a/71b45/63421/060ae/a87a5.nc"' plotname='"/prodigfs/ipslfs/dods/aidelkad/climafCache/df7a1/f9fb2/369d2/40fb7/acc48/81558/26fd8.png"' cmap='"BlueWhiteOrangeRed"' main_var='"tas"' title='""' myoffset=-273.15 mpCenterLonF=0 units='"degC"' colors='"-60 -50 -40 -35 -30 -25 -20 -15 -10 -6 0 6 10 14 18 22 26 24 27 28 30"' contours='"1"' gsnLeftString='"tas"' gsnRightString='"YEAR"' gsnCenterString='"LmdzOrAPctrl_1980_1999"' gsnStringFontHeightF=0.018 )15 (ncl -Q /home/fabric/users/denvil/climaf/climaf/../scripts/gplot.ncl main_file='"/prodigfs/ipslfs/dods/aidelkad/climafCache/c73b8/3bbce/0a42b/9cdec/3ea7c/75037/4de99.nc"' plotname='"/prodigfs/ipslfs/dods/aidelkad/climafCache/f800c/d889b/aeec8/05e64/53b4f/71339/3c8e8.png"' cmap='"precip_11lev"' main_var='"pr"' title='""' myscale=86400.0 mpCenterLonF=0 colors='"0.5 1 2 3 4 6 8 10 12 14"' contours='"1"' gsnLeftString='"pr"' gsnRightString='"YEAR"' gsnCenterString='"LmdzOrAPctrl_1980_1999"' gsnStringFontHeightF=0.018 ) 16 16 17 17 /bin/sh: ncl : commande introuvable 18 18 19 error : 'Script failure for : (ncl -Q /home/fabric/users/denvil/climaf/climaf/../scripts/gplot.ncl main_file=\'"/prodigfs/ipslfs/dods/aidelkad/climafCache/ ee57e/55c6b/5594a/71b45/63421/060ae/a87a5.nc"\' plotname=\'"/prodigfs/ipslfs/dods/aidelkad/climafCache/df7a1/f9fb2/369d2/40fb7/acc48/81558/26fd8.png"\' cmap=\'"BlueWhiteOrangeRed"\' main_var=\'"tas"\' title=\'""\' myoffset=-273.15 mpCenterLonF=0 units=\'"degC"\' colors=\'"-60 -50 -40 -35 -30 -25 -20 -15 -10 -6 0 6 10 14 18 22 26 24 27 28 30"\' contours=\'"1"\' gsnLeftString=\'"tas"\' gsnRightString=\'"YEAR"\' gsnCenterString=\'"LmdzOrAPctrl_1980_1999"\' gsnStringFontHeightF=0.018 ). More details either in file ./last.out or by re-runing with clog("debug")'19 error : 'Script failure for : (ncl -Q /home/fabric/users/denvil/climaf/climaf/../scripts/gplot.ncl main_file=\'"/prodigfs/ipslfs/dods/aidelkad/climafCache/c73b8/3bbce/0a42b/9cdec/3ea7c/75037/4de99.nc"\' plotname=\'"/prodigfs/ipslfs/dods/aidelkad/climafCache/f800c/d889b/aeec8/05e64/53b4f/71339/3c8e8.png"\' cmap=\'"precip_11lev"\' main_var=\'"pr"\' title=\'""\' myscale=86400.0 mpCenterLonF=0 colors=\'"0.5 1 2 3 4 6 8 10 12 14"\' contours=\'"1"\' gsnLeftString=\'"pr"\' gsnRightString=\'"YEAR"\' gsnCenterString=\'"LmdzOrAPctrl_1980_1999"\' gsnStringFontHeightF=0.018 ). More details either in file ./last.out or by re-runing with clog("debug")' -
BOL/Multi_atlas/atlas/last.out
r3684 r3696 2 2 3 3 stdout and stderr of script call : 4 (ncl -Q /home/fabric/users/denvil/climaf/climaf/../scripts/gplot.ncl main_file='"/prodigfs/ipslfs/dods/aidelkad/climafCache/ ee57e/55c6b/5594a/71b45/63421/060ae/a87a5.nc"' plotname='"/prodigfs/ipslfs/dods/aidelkad/climafCache/df7a1/f9fb2/369d2/40fb7/acc48/81558/26fd8.png"' cmap='"BlueWhiteOrangeRed"' main_var='"tas"' title='""' myoffset=-273.15 mpCenterLonF=0 units='"degC"' colors='"-60 -50 -40 -35 -30 -25 -20 -15 -10 -6 0 6 10 14 18 22 26 24 27 28 30"' contours='"1"' gsnLeftString='"tas"' gsnRightString='"YEAR"' gsnCenterString='"LmdzOrAPctrl_1980_1999"' gsnStringFontHeightF=0.018 )4 (ncl -Q /home/fabric/users/denvil/climaf/climaf/../scripts/gplot.ncl main_file='"/prodigfs/ipslfs/dods/aidelkad/climafCache/c73b8/3bbce/0a42b/9cdec/3ea7c/75037/4de99.nc"' plotname='"/prodigfs/ipslfs/dods/aidelkad/climafCache/f800c/d889b/aeec8/05e64/53b4f/71339/3c8e8.png"' cmap='"precip_11lev"' main_var='"pr"' title='""' myscale=86400.0 mpCenterLonF=0 colors='"0.5 1 2 3 4 6 8 10 12 14"' contours='"1"' gsnLeftString='"pr"' gsnRightString='"YEAR"' gsnCenterString='"LmdzOrAPctrl_1980_1999"' gsnStringFontHeightF=0.018 ) 5 5 6 6 /bin/sh: ncl : commande introuvable -
BOL/Multi_atlas/install_multi_atlas.sh
r3694 r3696 50 50 DODSDIR=$DODSDIR 51 51 eod 52 53 # Def env atlas54 cat <<eod >> defatlasenv.sh55 ########################################################################################################56 # Environnement57 module list58 which python59 ulimit -s unlimited60 export PYTHONPATH=$PYTHONPATH:/home/fabric/users/denvil/climaf61 export PATH=$PATH:/home/fabric/users/denvil/climaf/bin62 STORAGE=$DODSDIR/$login/lmdz/STORE63 if [ ! -d $DODSDIR/$login/climafCache ] ; then mkdir -p $DODSDIR/$login/climafCache ; fi64 export CLIMAF_CACHE=$DODSDIR/$login/climafCache65 echo CLIMAF_CACHE $CLIMAF_CACHE66 MULTIDIR=$MULTIDIR67 DIRATLAS=$DODSDIR/$login/lmdz/atlas68 ATLAS_DIR=$DODSDIR/$login/lmdz/atlas/Atlas$$69 if [ ! -d $DODSDIR/$login/lmdz/atlas/Atlas$$ ] ; then mkdir -p $DODSDIR/$login/lmdz/atlas/Atlas$$ ; fi70 ########################################################################################################71 eod72 73 52 fi 74 53 … … 154 133 # Machines locales lmd 155 134 135 local=`pwd -P` 136 156 137 echo -e "${noir}%%%%%%%%%%%%%%%%%%%%%%%%% ${rougefonce} MULTIATLAS LMDZ ${noir}%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%" 157 echo -e "${ bleufonce}" To create your multi-atlas you needs :138 echo -e "${vertfonce}" To create your multi-atlas you needs : 158 139 echo 1. to create your multiatlas directory "example Multi01" : 159 140 echo - mkdir -p /prodigfs/ipslfs/dods/$login/lmdz/MultiSimu/Multi01 … … 164 145 echo define atlas variables in file 165 146 echo - /prodigfs/ipslfs/dods/$login/lmdz/MultiSimu/Multi01/atlas.def 147 echo 3. Add the link to the simulation outputs in your file : $local/runs.txt 166 148 167 149 rm -f job_multi.sh … … 172 154 rm -f atlas.sh 173 155 cat entete.sh >| atlas.sh 174 cat defatlasenv.sh >> atlas.sh175 156 cat Utils/atlas0.sh >> atlas.sh 176 157 chmod +x atlas.sh 177 158 \mv atlas.sh atlas/. 178 159 179 echo Then you can run your multiatlas :160 echo 4. Then you can run your multiatlas : 180 161 echo ./job_multi.sh Multi01 181 162 echo -e "${noir}%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%"
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