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source: LMDZ6/trunk/makelmdz @ 5277

Last change on this file since 5277 was 5271, checked in by abarral, 9 months ago
Move dimensions.h into a module Nb: doesn't compile yet
Property copyright set to Name of program: LMDZ Creation date: 1984 Version: LMDZ5 License: CeCILL version 2 Holder: Laboratoire de m\'et\'eorologie dynamique, CNRS, UMR 8539 See the license file in the root directory Property svn:executable set to ``*
File size: 25.7 KB

Rev	Line
[1463]	1	#!/bin/bash
	2	#
[1695]	3	# $Id$
[1463]	4	#
	5	#
	6	########################################################################
	7	# for debug, uncomment line below
	8	#set -xv
	9	########################################################################
	10	# options par defaut pour la commande make
	11	########################################################################
	12	dim="96x72x19"
	13	physique=lmd
	14	code=gcm
	15	filtre=filtrez
	16	grille=reg
	17	couple=false
	18	veget=false
[4567]	19	inlandsis=false
	20	rrtm=false
	21	rad="oldrad"
	22	dust=false
	23	strataer=false
[1463]	24	chimie=false
	25	parallel=none
[3997]	26	paramem="mem"
[1463]	27	compil_mod=prod
	28	io=ioipsl
	29	LIBPREFIX=""
	30	fcm_path=none
	31	cosp=false
[3359]	32	cosp2=false
[3491]	33	cospv2=false
[5048]	34	force_compile=false
[4567]	35
[5048]	36
[2112]	37	full=""
[1463]	38
[2743]	39	arch_defined="FALSE"
	40	arch_path="arch"
	41	arch_default_path="arch"
	42
[1463]	43	# guess a default 'arch'
[1690]	44	arch="local" # start with assuming we're on a local machine with local arch file
[2746]	45	arch_defined="TRUE" # and thus also set arch_defined to true
[1463]	46	## try to recognise machine and infer arch from it
	47	machine=`hostname`
[3574]	48	if [[ "${machine:0:4}" == "jean" ]]
[1463]	49	then
[3574]	50	arch="X64_JEANZAY"
[1463]	51	fi
	52	if [[ "${machine:0:7}" == "platine" ]]
	53	then
	54	arch="IA64_PLATINE"
	55	fi
	56	if [[ "${machine:0:6}" == "titane" ]]
	57	then
	58	arch="X64_TITANE"
	59	fi
	60	if [[ "${machine:0:8}" == "mercure1" ]]
	61	then
	62	arch="SX8_MERCURE"
	63	fi
	64	if [[ "${machine:0:8}" == "mercure2" ]]
	65	then
	66	arch="SX9_MERCURE"
	67	fi
	68
	69	LMDGCM=`pwd -P`
	70	LIBFGCM=$LMDGCM/libf
	71	LIBOGCM=$LMDGCM/libo
	72	if [[ ! -d $LIBOGCM ]]
	73	then
	74	# create the directory
	75	mkdir $LIBOGCM
	76	if [[ ! $? ]]
	77	then
	78	echo "Failed to create directory $LIBOGCM"
	79	exit
	80	fi
	81	fi
[3232]	82	#COSP_PATH=$LMDGCM/.void_dir
[1463]	83
	84
	85
	86	localdir=`pwd -P`
	87	########################################################################
	88	# Quelques initialisations de variables du shell.
	89	########################################################################
	90
[3835]	91	CPP_KEY="IN_LMDZ"
[2239]	92	INCLUDE='-I$(LIBF)/grid -I$(LIBF)/misc -I$(LIBF)/filtrez -I. '
[1463]	93	LIB=""
	94	adjnt=""
	95	##COMPIL_FFLAGS="%PROD_FFLAGS"
	96	PARA_FFLAGS=""
	97	PARA_LD=""
	98	EXT_SRC=""
[2238]	99	#src_dirs: directories containing source files
[2239]	100	src_dirs="grid misc"
[1463]	101	########################################################################
	102	# lecture des options
	103	########################################################################
	104
	105	while (($# > 0))
	106	do
	107	case $1 in
	108	"-h") cat <<fin
	109	Usage :
[1772]	110	makelmdz [options] -arch nom_arch exec
	111	[-h] : brief help
	112	[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim)
	113	[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
	114	[-prod / -dev / -debug] : compilation mode production (default) / developement / debug
[4567]	115	[-c false/MPI1/OMCT] : coupling with ocean model : MPI1/OMCT/false (default: false)
[4283]	116	[-v false/orchideetrunk/orchidee2.1/orchidee2.0/orchidee1.9] : version of the vegetation model to include (default: false)
[1772]	117	false : no vegetation model
[4283]	118	orchideetrunk : compile using ORCHIDEE trunk from revision 7757 or higher
	119	orchidee2.1 : compile using ORCHIDEE 2.1 until 4.1 included or until revision 7757 on the trunk
[4567]	120	orchidee2.0 : compile using ORCHIDEE 2.0
[1772]	121	orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
	122	true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
	123	[-chimie INCA/false] : with INCA chemistry model or without (default: false)
[2238]	124	[-cosp true/false] : compile with/without cosp package (default: false)
[3359]	125	[-cosp2 true/false] : compile with/without cosp2 package (default: false)
[3491]	126	[-cospv2 true/false] : compile with/without cospv2 package (default: false)
[3793]	127	[-inlandsis true/false] : compile with/without inlandsis package (default: false)
[2238]	128	[-rrtm true/false] : compile with/without rrtm package (default: false)
[4408]	129	[-rad oldrad/rrtm/ecrad] : compile with oldrad/rrtm/ecrad radiatif code (default: oldrad)
[4567]	130	[-dust true/false] : compile with/without the dust package by Boucher and co (default: false)
	131	[-strataer true/false] : compile with/without the strat aer package by Boucher and co (default: false)
[1772]	132	[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
	133	[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
[2097]	134	[-io ioipsl/mix/xios] : Input/Output library (default: ioipsl)
[1772]	135	[-include INCLUDES] : extra include path to add
	136	[-cpp CPP_KEY] : additional preprocessing definitions
	137	[-adjnt] : adjoint model, not operational ...
[3997]	138	[-mem] : reduced memory dynamics (obsolete flag; always on in parallel mode)
[1772]	139	[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
	140	[-link LINKS] : additional links with other libraries
[4567]	141	[-full] : full recompiling
[1772]	142	[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
	143	[-ext_src path] : path to an additional set of routines to compile with the model
[2743]	144	[-arch_path path] : path to architecture files (default: $arch_default_path)
[5048]	145	[-force_compile] : recompile although there seems to be an on-going compilation
[1772]	146	-arch nom_arch : target architecture
	147	exec : executable to build
[1463]	148	fin
	149	exit;;
	150	"-d")
	151	dim=$2 ; shift ; shift ;;
	152
	153	"-p")
	154	physique="$2" ; shift ; shift ;;
	155
	156	"-g")
	157	grille="$2" ; shift ; shift ;;
	158
	159	"-c")
	160	couple="$2" ; shift ; shift ;;
	161
	162	"-prod")
	163	compil_mod="prod" ; shift ;;
	164
	165	"-dev")
	166	compil_mod="dev" ; shift ;;
	167
	168	"-debug")
	169	compil_mod="debug" ; shift ;;
	170
	171	"-io")
	172	io="$2" ; shift ; shift ;;
	173
	174	"-v")
	175	veget="$2" ; shift ; shift ;;
	176
[4567]	177	"-inlandsis")
	178	inlandsis="$2" ; shift ; shift ;;
	179
	180	"-rrtm")
	181	rrtm="$2" ; if [ "$2" = "false" ] ; then rad="oldrad" ; else rad="rrtm" ; fi ; shift ; shift ;;
	182
	183	"-rad")
	184	rad="$2" ; shift ; shift ;;
	185
	186	"-dust")
	187	dust="$2" ; shift ; shift ;;
	188
	189	"-strataer")
	190	strataer="$2" ; shift ; shift ;;
	191
[1463]	192	"-chimie")
	193	chimie="$2" ; shift ; shift ;;
	194
	195	"-parallel")
	196	parallel="$2" ; shift ; shift ;;
	197
	198	"-include")
	199	INCLUDE="$INCLUDE -I$2" ; shift ; shift ;;
	200
	201	"-cpp")
	202	CPP_KEY="$CPP_KEY $2" ; shift ; shift ;;
	203
	204	"-cosp")
	205	cosp="$2" ; shift ; shift ;;
[3359]	206
	207	"-cosp2")
	208	cosp2="$2" ; shift ; shift ;;
[3491]	209
[4567]	210	"-cospv2")
[3491]	211	cospv2="$2" ; shift ; shift ;;
[1690]	212
	213	"-mem")
[3997]	214	echo "option -mem is obsolete (now always on in parallel)"
[1690]	215	paramem="mem" ; shift ;;
[1463]	216
	217	"-filtre")
	218	filtre=$2 ; shift ; shift ;;
	219
	220	"-link")
	221	LIB="$LIB $2" ; shift ; shift ;;
	222
	223	"-fcm_path")
	224	fcm_path=$2 ; shift ; shift ;;
	225
	226	"-ext_src")
[2238]	227	EXT_SRC=$2 ; src_dirs="$src_dirs $EXT_SRC" ; shift ; shift ;;
[1463]	228
[4567]	229	"-full")
	230	full="full" ; shift ;;
	231
[1463]	232	"-arch")
[2743]	233	arch=$2 ; arch_defined="TRUE" ; shift ; shift ;;
[1463]	234
[2743]	235	"-arch_path")
	236	arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;;
	237
[5048]	238	"-force_compile")
	239	force_compile=true ; shift ;;
	240
[1463]	241	*)
	242	code="$1" ; shift ;;
	243	esac
	244	done
	245
	246	###############################################################
[2098]	247	# lecture des chemins propres \`a l'architecture de la machine #
[1463]	248	###############################################################
	249	rm -f .void_file
	250	echo > .void_file
	251	rm -rf .void_dir
	252	mkdir .void_dir
[2743]	253
	254	if [[ "$arch_defined" == "TRUE" ]]
[1463]	255	then
[2743]	256	rm -f arch.path
	257	rm -f arch.fcm
	258	rm -f arch.env
	259
	260	if test -f $arch_path/arch-${arch}.path
	261	then
	262	ln -s $arch_path/arch-${arch}.path arch.path
	263	elif test -f $arch_default_path/arch-${arch}.path
	264	then
	265	ln -s $arch_default_path/arch-${arch}.path arch.path
	266	fi
	267
	268	if test -f $arch_path/arch-${arch}.fcm
	269	then
	270	ln -s $arch_path/arch-${arch}.fcm arch.fcm
	271	elif test -f $arch_default_path/arch-${arch}.fcm
	272	then
	273	ln -s $arch_default_path/arch-${arch}.fcm arch.fcm
	274	fi
	275
	276	if test -f $arch_path/arch-${arch}.env
	277	then
	278	ln -s $arch_path/arch-${arch}.env arch.env
	279	elif test -f $arch_default_path/arch-${arch}.env
	280	then
	281	ln -s $arch_default_path/arch-${arch}.env arch.env
	282	else
	283	ln -s .void_file arch.env
	284	fi
	285	# source architecture PATH and ENV files
	286	source arch.env
[1463]	287	source arch.path
	288	else
[2743]	289	echo "You must define a target architecture"
	290	exit 1
[1463]	291	fi
[2743]	292
[1463]	293	########################################################################
	294	# Definition des clefs CPP, des chemins des includes et modules
	295	# et des libraries
	296	########################################################################
	297
	298	# basic compile flags from arch.fcm file
	299	archfileline=$( grep -i '^%BASE_FFLAGS' arch.fcm )
	300	COMPIL_FFLAGS=$( echo ${archfileline##%BASE_FFLAGS} )
	301
	302	# other compile flags, depending on compilation mode
	303	if [[ "$compil_mod" == "prod" ]]
	304	then
	305	## read COMPIL_FFLAGS from arch.fcm file
	306	archfileline=$( grep -i '^%PROD_FFLAGS' arch.fcm )
	307	archfileopt=$( echo ${archfileline##%PROD_FFLAGS} )
	308	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	309	elif [[ "$compil_mod" == "dev" ]]
	310	then
	311	## read %DEV_FFLAGS from arch.fcm file
	312	archfileline=$( grep -i '^%DEV_FFLAGS' arch.fcm )
	313	archfileopt=$( echo ${archfileline##%DEV_FFLAGS} )
	314	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	315	elif [[ "$compil_mod" == "debug" ]]
	316	then
	317	## read %DEBUG_FFLAGS from arch.fcm file
	318	archfileline=$( grep -i '^%DEBUG_FFLAGS' arch.fcm )
	319	archfileopt=$( echo ${archfileline##%DEBUG_FFLAGS} )
	320	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	321	fi
	322
	323	# add CPP_KEY defined in arch.fcm file
	324	archfileline=$( grep -i '^%FPP_DEF' arch.fcm )
	325	archfileopt=$( echo ${archfileline##%FPP_DEF} )
	326	CPP_KEY="$CPP_KEY ${archfileopt}"
	327
	328	# get compiler name from arch.fcm file
	329	archfileline=$( grep -i '^%COMPILER' arch.fcm )
	330	fcompiler=$( echo ${archfileline##%COMPILER} )
	331
	332	# get linker name from arch.fcm file
	333	archfileline=$( grep -i '^%LINK' arch.fcm )
	334	linker=$( echo ${archfileline##%LINK} )
	335
	336	# get ar command from arch.fcm file
[3045]	337	archfileline=$( grep -i '^%AR ' arch.fcm )
[1463]	338	arcommand=$( echo ${archfileline##%AR} )
	339
[3045]	340	# get ar command options from arch.fcm file
	341	archfileline=$( grep -i '^%ARFLAGS' arch.fcm )
[3051]	342	arflags=$( echo ${archfileline##%ARFLAGS} )
[3045]	343
[1463]	344	# get make utility from arch.fcm file
	345	archfileline=$( grep -i '^%MAKE' arch.fcm )
	346	makecommand=$( echo ${archfileline##%MAKE} )
	347
	348	# get basic libraries to link with arch.fcm file
	349	archfileline=$( grep -i '^%BASE_LD' arch.fcm )
	350	archfileopt=$( echo ${archfileline##%BASE_LD} )
	351	LIB="$LIB ${archfileopt}"
	352
[1873]	353	# add Include files defined in arch.fcm file for pre-processing
	354	archfileline=$( grep -i '^%FPP_FLAGS' arch.fcm )
	355	for inc in $archfileline ; do INCLUDE="$INCLUDE `echo $inc \| grep '\-I'`" ; done
	356
[2250]	357	phys_root=$physique
	358	if [[ "${physique:0:3}" == "lmd" ]] ; then phys_root=lmd ; fi
	359	if [[ "${physique:0:4}" == "mars" ]] ; then phys_root=mars ; fi
	360	if [[ "${physique:0:3}" == "std" ]] ; then phys_root=std ; fi
	361	if [[ "${physique:0:5}" == "venus" ]] ; then phys_root=venus ; fi
	362	if [[ "${physique:0:5}" == "titan" ]] ; then phys_root=titan ; fi
	363	if [[ "${physique:0:3}" == "dev" ]] ; then phys_root=dev ; fi
	364
[1463]	365	if [[ "$physique" != "nophys" ]]
	366	then
[1690]	367	#We'll use some physics
[2326]	368	src_dirs="$src_dirs phy_common phy$physique"
[2239]	369	LIBPHY='$(LIBO)/libphy'"$physique"'.a'
[2326]	370	LIBPHY_COMMON='$(LIBO)/libphy_common.a'
	371	lib_phy='-lphy'"$physique"' -lphy_common'
[1690]	372	CPP_KEY="$CPP_KEY CPP_PHYS"
[4567]	373	if [[ "${phys_root}" == "lmd" ]]
	374	then
	375	#For lmd physics, default planet type is Earth
	376	CPP_KEY="$CPP_KEY CPP_EARTH"
[1690]	377	fi
[1463]	378	fi
	379
	380	if [[ "$chimie" == "INCA" ]]
	381	then
	382	CPP_KEY="$CPP_KEY INCA"
[4426]	383	INCLUDE="$INCLUDE ${INCA_INCDIR}"
	384	LIB="$LIB ${INCA_LIBDIR} ${INCA_LIB}"
	385	libchimie=" ${INCA_LIBDIR} ${INCA_LIB}"
[1463]	386	fi
	387
	388	if [[ "$couple" != "false" ]]
	389	then
	390	CPP_KEY="$CPP_KEY CPP_COUPLE"
[4426]	391	INCLUDE="$INCLUDE ${OASIS_INCDIR}"
	392	LIB="$LIB ${OASIS_LIBDIR} ${OASIS_LIB}"
[1463]	393	fi
	394
	395	if [[ "$parallel" == "none" ]]
	396	then
	397	FLAG_PARA=''
	398	else
[1810]	399	FLAG_PARA="$paramem"
[2202]	400	if [[ $paramem == par ]]
	401	then
	402	echo "The version of the dynamics in dyn3dpar is no longer updated."
	403	echo "You should use option \"-mem\"."
	404	exit 1
[2238]	405	fi
[1463]	406	fi
	407
	408	if [[ "$parallel" == "mpi" ]]
	409	then
	410	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI"
	411	# MPI additional compilation options
	412	archfileline=$( grep -i '^%MPI_FFLAGS' arch.fcm )
	413	PARA_FFLAGS=$( echo ${archfileline##%MPI_FFLAGS} )
	414	# MPI additional links
	415	archfileline=$( grep -i '^%MPI_LD' arch.fcm )
	416	PARA_LD=$( echo ${archfileline##%MPI_LD} )
	417	elif [[ "$parallel" == "omp" ]]
	418	then
	419	CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP"
	420	# OMP additional compilation options
	421	archfileline=$( grep -i '^%OMP_FFLAGS' arch.fcm )
	422	PARA_FFLAGS=$( echo ${archfileline##%OMP_FFLAGS} )
	423	# OMP additional links
	424	archfileline=$( grep -i '^%OMP_LD' arch.fcm )
	425	PARA_LD=$( echo ${archfileline##%OMP_LD} )
	426	elif [[ "$parallel" == "mpi_omp" ]]
	427	then
	428	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP"
	429	# MPI additional compilation options
	430	archfileline=$( grep -i '^%MPI_FFLAGS' arch.fcm )
	431	PARA_FFLAGS=$( echo ${archfileline##%MPI_FFLAGS} )
	432	# OMP additional compilation options
	433	archfileline=$( grep -i '^%OMP_FFLAGS' arch.fcm )
	434	PARA_FFLAGS="${PARA_FFLAGS} "$( echo $archfileopt ${archfileline##%OMP_FFLAGS} )
	435	# MPI additional links
	436	archfileline=$( grep -i '^%MPI_LD' arch.fcm )
	437	PARA_LD=$( echo ${archfileline##%MPI_LD} )
	438	# OMP additional links
	439	archfileline=$( grep -i '^%OMP_LD' arch.fcm )
	440	PARA_LD="${PARA_LD} "$( echo $archfileopt ${archfileline##%OMP_LD} )
	441	fi
	442
	443	if [[ ( "$parallel" == "omp" \|\| "$parallel" == "mpi_omp" ) \
	444	&& "$compil_mod" == "debug" ]]
	445	then
	446	echo "Usually, parallelization with OpenMP requires some optimization."
	447	echo "We suggest switching to \"-dev\"."
	448	fi
	449
[1810]	450
	451	#==============================================================================
[4283]	452	if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" -o "$veget" = "orchidee2.1" -o "$veget" = "orchideetrunk" ]
[1463]	453	then
[1810]	454
[4426]	455	INCLUDE="${INCLUDE} ${ORCH_INCDIR}"
[1772]	456	CPP_KEY="$CPP_KEY CPP_VEGET"
[1810]	457	# temporary, for Orchidee versions 1.9.* (before openmp activation)
	458	if [[ "$veget" == "orchidee1.9" ]] ; then
	459	CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP"
	460	fi
	461	if [[ "$veget" == "orchidee2.0" ]] ; then
[4426]	462	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob -lorchidee"
[3435]	463	CPP_KEY="$CPP_KEY ORCHIDEE_NOUNSTRUCT"
	464	elif [[ "$veget" == "orchidee2.1" ]] ; then
[4283]	465	CPP_KEY="$CPP_KEY ORCHIDEE_NOLIC"
[4426]	466	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob -lorchidee"
[4283]	467	elif [[ "$veget" == "orchideetrunk" ]] ; then
[4426]	468	orch_libs="-lorchidee"
[1810]	469	else
[4426]	470	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob"
[1810]	471	fi
[4426]	472	LIB="${LIB} ${ORCH_LIBDIR} ${orch_libs}"
	473	# for lib in ${orch_libs} ; do
	474	# if [ -f ${ORCH_LIBDIR}/lib${LIBPREFIX}$lib.a ] ; then
	475	# LIB="${LIB} -l${LIBPREFIX}$lib "
	476	# fi
	477	# done
[1810]	478	elif [[ "$veget" != "false" ]] ; then
[1772]	479	echo "Option -v $veget does not exist"
	480	echo "Use ./makelmdz -h for more information"
	481	exit
[1463]	482	fi
	483
[5259]	484	src_dirs="$src_dirs phy${physique}/inlandsis"
	485	if [[ "$inlandsis" == "true" ]]; then
[4567]	486	CPP_KEY="$CPP_KEY CPP_INLANDSIS"
	487	fi
	488
	489
	490	if [[ "$rad" == "rrtm" ]]
	491	then
	492	CPP_KEY="$CPP_KEY CPP_RRTM"
	493	src_dirs="$src_dirs phy${physique}/rrtm"
	494	fi
	495	if [[ "$rad" == "ecrad" ]]
	496	then
	497	CPP_KEY="$CPP_KEY CPP_ECRAD"
	498	src_dirs="$src_dirs phy${physique}/ecrad"
	499	fi
	500
[5253]	501	src_dirs="$src_dirs phy${physique}/Dust"
[5261]	502	INCLUDE="${INCLUDE} -I\$(LIBF)/phy${physique}/Dust"
[5253]	503	if [[ "$dust" == "true" ]]; then
[4567]	504	CPP_KEY="$CPP_KEY CPP_Dust"
	505	fi
	506
[5252]	507	src_dirs="$src_dirs phy${physique}/StratAer"
	508	if [[ "$strataer" == "true" ]]; then
[4567]	509	CPP_KEY="$CPP_KEY CPP_StratAer"
	510	fi
	511
[1810]	512	#===============================================================================
[4489]	513	INCLUDE="$INCLUDE ${NETCDF95_INCDIR}"
	514	LIB="$LIB ${NETCDF95_LIBDIR} -l${LIBPREFIX}netcdf95"
	515
[1463]	516	if [[ $io == ioipsl ]]
	517	then
	518	CPP_KEY="$CPP_KEY CPP_IOIPSL"
[4426]	519	INCLUDE="$INCLUDE ${IOIPSL_INCDIR}"
	520	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl"
[2097]	521	elif [[ $io == mix ]]
[1897]	522	then
	523	# For now, xios implies also using ioipsl
	524	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS"
[4426]	525	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
	526	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl ${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios -l${LIBPREFIX}stdc++"
[2097]	527	elif [[ $io == xios ]]
	528	then
	529	# For now, xios implies also using ioipsl
	530	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS CPP_IOIPSL_NO_OUTPUT"
[4426]	531	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
	532	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl ${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios -l${LIBPREFIX}stdc++"
[1463]	533	fi
	534
	535	if [[ "$cosp" == "true" ]]
	536	then
	537	CPP_KEY="$CPP_KEY CPP_COSP"
[3232]	538	# COSP_PATH="$LIBFGCM/phylmd/cosp"
	539	src_dirs="$src_dirs phy${physique}/cosp"
[1463]	540	# LIB="${LIB} -l${LIBPREFIX}cosp"
[3232]	541	# opt_dep="$opt_dep cosp"
	542	# lcosp="-l${LIBPREFIX}cosp"
	543	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cosp'
[1463]	544	fi
	545
[3359]	546	if [[ "$cosp2" == "true" ]]
	547	then
	548	CPP_KEY="$CPP_KEY CPP_COSP2"
	549	src_dirs="$src_dirs phy${physique}/cosp2"
	550	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cosp2'
	551	fi
	552
[3491]	553	if [[ "$cospv2" == "true" ]]
	554	then
	555	CPP_KEY="$CPP_KEY CPP_COSPV2"
	556	src_dirs="$src_dirs phy${physique}/cospv2"
	557	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cospv2'
	558	fi
[3359]	559
[3491]	560
[3793]	561
[3835]	562	#add new ocean skin modelisation to source dir by default
[2690]	563
[3835]	564	src_dirs="$src_dirs phy${physique}/Ocean_skin"
	565
	566
[1551]	567	INCLUDE="$INCLUDE ${NETCDF_INCDIR}"
[4426]	568	LIB="$LIB ${NETCDF_LIBDIR} ${NETCDF_LIB}"
[1463]	569
	570	########################################################################
	571	# calcul du nombre de dimensions
	572	########################################################################
	573
	574
	575	dim_full=$dim
	576	dim=`echo $dim \| sed -e 's/[^0-9]/ /g'`
	577	set $dim
	578	dimc=$#
	579	echo calcul de la dimension
	580	echo dim $dim
	581	echo dimc $dimc
	582
	583	########################################################################
	584	# Gestion des dimensions du modele.
	585	# on cree ou remplace le fichier des dimensions
	586	########################################################################
	587
[1695]	588	cd $LIBFGCM/grid
[5271]	589	if [[ -f dimensions_mod.f90 ]]
[1695]	590	then
[5048]	591	if [[ $force_compile == true ]]
	592	then
[5271]	593	\rm -f $LIBFGCM/grid/dimensions_mod.f90
[5048]	594	else
	595	echo "WARNING: you are probably already compiling the model somewhere else."
	596	echo "Wait until the first compilation is finished before launching this one."
	597	echo "If you are sure that you are not compiling elsewhere, "
	598	echo "If you are sure that you are not compiling elsewhere, then"
[5271]	599	echo rm -f $LIBFGCM/grid/dimensions_mod.f90
[5048]	600	echo "before reruning the compilation"
	601	echo "or run makelmdz with option -force_compile"
	602	exit 1
	603	fi
[1695]	604	fi
	605
[5048]	606
[1463]	607	cd $LIBFGCM/grid/dimension
	608	./makdim $dim
[5271]	609	cat $LIBFGCM/grid/dimensions_mod.f90
[1463]	610	cd $LMDGCM
	611
	612	########################################################################
	613	# Differentes dynamiques (3d, 2d, 1d)
	614	########################################################################
	615
[1810]	616	if (( $dimc == 3 )) ; then
[2238]	617	src_dirs="$src_dirs $filtre dyn3d_common dyn3d${FLAG_PARA}"
[2239]	618	if [[ $physique != "nophys" ]] ; then
[2417]	619	src_dirs="$src_dirs dynphy_lonlat dynphy_lonlat/phy${phys_root}"
	620	libdyn_phy="-ldynphy_lonlat"
	621	LIBDYN_PHYS='$(LIBO)/libdynphy_lonlat.a'
	622	INCLUDE="$INCLUDE "'-I$(LIBF)/dynphy_lonlat'
	623	INCLUDE="$INCLUDE "'-I$(LIBF)/dynphy_lonlat/'"phy${phys_root}"
[2239]	624	fi
[1810]	625	cd $LIBFGCM/grid
	626	\rm fxyprim.h
	627	cp -p fxy_${grille}.h fxyprim.h
[1463]	628	filtre="FILTRE=$filtre"
[2016]	629	INCLUDE="$INCLUDE "'-I$(LIBF)/dyn3d${FLAG_PARA} -I$(LIBF)/dyn3d_common '
[1810]	630	elif (( $dimc == 2 )) ; then
[2239]	631	src_dirs="$src_dirs dyn2d"
[1810]	632	filtre="FILTRE= L_FILTRE= "
	633	INCLUDE="$INCLUDE "'-I$(LIBF)/dyn2d'
	634	elif (( $dimc == 1 )) ; then
[2239]	635	#src_dirs="$src_dirs dyn3d dyn3d_common filtrez"
	636	src_dirs="$src_dirs phy${physique}/dyn1d"
[2023]	637	CPP_KEY="$CPP_KEY CPP_1D"
[2239]	638	filtre="L_DYN= DYN= FILTRE= L_FILTRE= "
	639	#INCLUDE="$INCLUDE "'-I$(LIBF)/dyn3d -I$(LIBF)/dyn3d_common ' # Pas tres propre
	640	INCLUDE="$INCLUDE "' -I$(LIBF)/phy'"$physique"'/dyn1d'
[1463]	641	else
[1810]	642	echo Dimension dimc=$dimc pas prevu ; exit
[1463]	643	fi
	644
	645	cd $LMDGCM
	646
[2112]	647	########################################################################
	648	# library directory name:
	649	########################################################################
[1463]	650
[4186]	651	nomlib=`echo ${arch}_${physique}_${rad}_${dim_full}_${grille}_${compil_mod}_parall${parallel}_${CPP_KEY}_${FLAG_PARA} \| sed -e 's/ //g' -e 's/-//g ' \| sed -e 's/CPP_//g'`
[2112]	652	echo "Path to library: "$nomlib
	653
[1463]	654	########################################################################
[2112]	655	# Cleanup for a full recompilation, if requested
	656	########################################################################
	657
	658	if [[ $full == "full" ]]
	659	then
	660	# remove makefile and librairies
	661	echo "-full option: recompiling from scratch"
	662	\rm -f makefile
	663	\rm -rf "${LIBOGCM}/${nomlib}"
	664	fi
	665
	666	########################################################################
[1463]	667	# Avant de lancer le make, on recree le makefile si necessaire
	668	########################################################################
	669	########################################################################
	670	# c'est a dire dans 3 cas:
	671	# 1. si la liste des fichiers .F et .h a ete modifiee depuis la
	672	# derniere creation du makefile
	673	# 2. si le fichier contenant cette liste "liste_des_sources"
	674	# n'existe pas.
	675	# 3. Si le makefile n'existe pas.
	676	########################################################################
	677	cd $LMDGCM
[1810]	678
[1463]	679
[2238]	680	if [[ -r .makelmdz ]]
[1463]	681	then
[2238]	682	old_lmdz_configuration=$(cat .makelmdz )
	683	else
	684	old_lmdz_configuration=""
	685	fi
	686	lmdz_configuration="$src_dirs"
	687	if [[ "$lmdz_configuration" != "$old_lmdz_configuration" ]]
	688	then
	689	configuration_change="true"
	690	else
	691	configuration_change="false"
	692	fi
	693
[2250]	694	mkdir -p make_dir
	695	suf_make=`echo $src_dirs \| sed -e 's/\//_/g' -e 's/ /_/g'`
	696	echo suf_make $suf_make
	697
[4085]	698	########################################################################
	699	# (re)Creation du makefile
	700	########################################################################
	701
	702	echo "Controle de la necessite de recreer le makefile"
[2250]	703	\rm tmp77 tmp90
	704	for dir in $src_dirs ; do
[4085]	705	# On recupere la liste de tous les subroutine, use et include pour
	706	# vérifier que les dépendense n'ont pas changé et reconstuire le
	707	# makefile le cas échéant
	708	# On enleve tout apres ONLy et on met un "uniq" pour que ca ne recrée pas
	709	# le makefile si on se contente d'ajouter des lignes dans le ONLY
[4377]	710	exclude="replay automatic include"
[4085]	711	for str in subroutine "use " "include " ; do
[4377]	712	grep -i "$str" libf/$dir/.[Fh] \| sed -e "/$exclude/d" \| cut -d\( -f1 \| sed -e 's/[Oo][Nn][Ll][Yy]..$//' \| uniq >> tmp77
	713	grep -i "$str" libf/$dir/.F90 \| sed -e "/$exclude/d" \| cut -d\( -f1 \| sed -e 's/[Oo][Nn][Ll][Yy]..$//' \| uniq >> tmp90
[4085]	714	done
[2250]	715	done
	716
	717	liste77=make_dir/liste_des_sources_f77_$suf_make
	718	liste90=make_dir/liste_des_sources_f90_$suf_make
	719	makefile=make_dir/makefile_$suf_make
	720
[2269]	721	if [[ $configuration_change == "true" \|\| ! ( -r $makefile ) \|\| ! ( -r $liste90 ) \|\| ! ( -r $liste77 ) \|\| ` diff tmp77 $liste77 \| wc -w ` -ne 0 \|\| ` diff tmp90 $liste90 \| wc -w ` -ne 0 ]]
[2238]	722	then
[1463]	723	echo "les fichiers suivants ont ete crees ou detruits"
	724	echo "ou les fichiers suivants sont passes ou ne sont plus en Fortran 90"
[2250]	725	diff $liste77 tmp77
	726	diff $liste90 tmp90
	727	\cp -f tmp77 $liste77
	728	\cp -f tmp90 $liste90
[2238]	729	echo "Recreating the makefile"
	730	echo "src_dirs: $src_dirs"
	731	./create_make_gcm $src_dirs > tmp
[2250]	732	\mv -f tmp $makefile
[2238]	733	echo "New makefile created"
[4085]	734	else
	735	echo Pas besoin de recreer le makefile
[1463]	736	fi
	737
[4085]	738
[2250]	739	ln -sf $makefile makefile
[2238]	740	echo "$lmdz_configuration" > .makelmdz
	741
[1463]	742	#################################################################
	743	# Preparation de l'execution de la comande make
	744	#################################################################
	745
	746	source_code=${code}.F
[2239]	747	dirmain=dyn${dimc}d${FLAG_PARA}
[1463]	748	if [[ -r $LMDGCM/libf/dyn${dimc}d${FLAG_PARA}/${code}.F90 ]]
	749	then
	750	source_code=${code}.F90
[5269]	751	elif [[ -r $LMDGCM/libf/dyn${dimc}d${FLAG_PARA}/${code}.f90 ]]
	752	then
	753	source_code=${code}.f90
[2016]	754	elif [[ -r $LMDGCM/libf/phy$physique/${code}.F90 ]] ; then
[2239]	755	dirmain=phy$physique
[2016]	756	source_code=${code}.F90
[2417]	757	elif [[ -r $LMDGCM/libf/dynphy_lonlat/phy$phys_root/${code}.F90 ]] ; then
	758	dirmain="dynphy_lonlat/phy${phys_root}"
[2239]	759	source_code=${code}.F90
	760	elif [[ -r $LMDGCM/libf/phy$physique/dyn1d/${code}.F90 ]] ; then
	761	dirmain=phy$physique/dyn1d
	762	source_code=${code}.F90
[1463]	763	fi
	764
	765	if [[ ! -d "${LIBOGCM}/${nomlib}" ]]
	766	then
	767	mkdir ${LIBOGCM}/${nomlib}
	768	# check we indeed managed to create the directory
	769	if [[ ! $? ]]
	770	then
	771	echo "Error: could not create directory ${LIBOGCM}/${nomlib}"
	772	exit
	773	fi
	774	fi
	775
	776	# where module files are created
	777	mod_loc_dir=$localdir
	778
	779	if [[ "$physique" != "nophys" ]]
	780	then
	781	INCLUDE="$INCLUDE"' -I$(LIBF)/phy'"$physique"
	782	fi
[1810]	783	INCLUDE="$INCLUDE"' -I'${LIBOGCM}/${nomlib}
[1463]	784
	785	# ranlib utility (check it exists or else default to ls)
	786	if [[ `which ranlib > /dev/null 2>&1 ; echo $?` -eq 0 ]]
	787	then
	788	ranlib="ranlib"
	789	else
	790	ranlib="ls"
	791	fi
	792
	793	# add CPP keys to COMPIL_FLAGS
	794	# (but first add -D before all CPP_KEY items)
	795	cpp_definitions=`echo $CPP_KEY \| sed -e 's/[A-Za-z_=0-9]*/-D&/g'`
	796	# (but add a -WF,-D before all CPP_KEY items) => for xlf on Vargas
	797	if [[ "${fcompiler:0:3}" == "xlf" ]]
	798	then
	799	cpp_definitions=`echo $CPP_KEY \| sed -e 's/[A-Za-z_=0-9]*/-WF,-D&/g'`
	800	fi
	801	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${cpp_definitions}"
	802
	803	#################################################################
	804	# Execution du make
	805	#################################################################
[4567]	806	set -v
[1463]	807	$makecommand RANLIB=$ranlib -f $LMDGCM/makefile \
	808	OPTION_DEP="$opt_dep" OPTION_LINK="$LIB ${PARA_LD}" \
	809	OPTIM90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	810	OPTIMTRU90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	811	OPTIM="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	812	INCLUDE="$INCLUDE" \
	813	$filtre \
	814	LIBO=${LIBOGCM}/${nomlib} \
	815	"PHYS=$physique" \
[2239]	816	LIBPHY=${LIBPHY} \
[2326]	817	LIBPHY_COMMON=${LIBPHY_COMMON} \
[2239]	818	LIBDYN_PHYS=${LIBDYN_PHYS} \
[1463]	819	DIM=$dimc \
	820	FLAG_PARA=$FLAG_PARA \
[2239]	821	L_PHY="$lib_phy" \
	822	L_DYN_PHY="$libdyn_phy" \
[1810]	823	L_ADJNT=$adjnt \
[1463]	824	L_COSP="$lcosp" \
[3359]	825	L_COSP2="$lcosp2" \
[3491]	826	L_COSPV2="$lcospv2" \
[1463]	827	L_CHIMIE="$libchimie" \
	828	LOCAL_DIR="$localdir" \
	829	F77="$fcompiler" \
	830	F90="$fcompiler" \
	831	OPLINK="$LIB" \
	832	LINK="$linker" \
	833	GCM="$LMDGCM" \
	834	MOD_LOC_DIR=$mod_loc_dir \
	835	MOD_SUFFIX="mod" \
	836	AR=$arcommand \
[3051]	837	ARFLAGS="$arflags" \
[2239]	838	DIRMAIN=$dirmain \
[1463]	839	SOURCE=$source_code \
	840	PROG=$code
	841
[4567]	842	set +v
[1810]	843
[5271]	844	if [[ -r $LIBFGCM/grid/dimensions_mod.f90 ]]
[1463]	845	then
	846	# Cleanup: remove dimension.h file
[5271]	847	\rm -f $LIBFGCM/grid/dimensions_mod.f90
[1463]	848	fi

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