1 | ! easy_netcdf_read_mpi.f90 - Read netcdf file on one task and share with other tasks |
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2 | ! |
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3 | ! (C) Copyright 2017- ECMWF. |
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4 | ! |
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5 | ! This software is licensed under the terms of the Apache Licence Version 2.0 |
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6 | ! which can be obtained at http://www.apache.org/licenses/LICENSE-2.0. |
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7 | ! |
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8 | ! In applying this licence, ECMWF does not waive the privileges and immunities |
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9 | ! granted to it by virtue of its status as an intergovernmental organisation |
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10 | ! nor does it submit to any jurisdiction. |
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11 | ! |
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12 | ! Author: Robin Hogan |
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13 | ! Email: r.j.hogan@ecmwf.int |
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14 | ! |
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15 | |
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16 | module easy_netcdf_read_mpi |
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17 | |
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18 | use easy_netcdf, only : netcdf_file_raw => netcdf_file |
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19 | use parkind1, only : jpim, jprb |
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20 | use radiation_io, only : nulout, nulerr, my_abort => radiation_abort |
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21 | |
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22 | implicit none |
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23 | |
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24 | ! MPI tag for radiation and physics communication |
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25 | integer(kind=jpim), parameter :: mtagrad = 2800 |
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26 | |
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27 | !--------------------------------------------------------------------- |
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28 | ! An object of this type provides convenient read or write access to |
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29 | ! a NetCDF file |
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30 | type netcdf_file |
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31 | type(netcdf_file_raw) :: file |
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32 | logical :: is_master_task = .true. |
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33 | contains |
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34 | procedure :: open => open_netcdf_file |
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35 | procedure :: close => close_netcdf_file |
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36 | procedure :: get_real_scalar |
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37 | procedure :: get_real_vector |
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38 | procedure :: get_real_matrix |
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39 | procedure :: get_real_array3 |
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40 | generic :: get => get_real_scalar, get_real_vector, & |
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41 | & get_real_matrix, get_real_array3 |
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42 | procedure :: get_global_attribute |
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43 | |
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44 | procedure :: set_verbose |
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45 | procedure :: transpose_matrices |
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46 | procedure :: exists |
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47 | end type netcdf_file |
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48 | |
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49 | contains |
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50 | |
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51 | ! --- GENERIC SUBROUTINES --- |
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52 | |
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53 | !--------------------------------------------------------------------- |
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54 | ! Open a NetCDF file with name "file_name", optionally specifying the |
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55 | ! verbosity level (0-5) |
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56 | subroutine open_netcdf_file(this, file_name, iverbose) |
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57 | |
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58 | USE MPL_MODULE, ONLY : MPL_BROADCAST, MPL_MYRANK |
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59 | |
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60 | class(netcdf_file) :: this |
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61 | character(len=*), intent(in) :: file_name |
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62 | integer, intent(in), optional :: iverbose |
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63 | |
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64 | integer :: istatus |
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65 | |
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66 | ! Store verbosity level in object |
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67 | if (present(iverbose)) then |
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68 | this%file%iverbose = iverbose |
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69 | else |
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70 | ! By default announce files being opened and closed, but not |
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71 | ! variables read/written |
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72 | this%file%iverbose = 2 |
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73 | end if |
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74 | |
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75 | ! By default we don't transpose 2D arrays on read |
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76 | this%file%do_transpose_2d = .false. |
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77 | |
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78 | if (MPL_MYRANK() == 1) then |
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79 | this%is_master_task = .true. |
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80 | call this%file%open(file_name, iverbose) |
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81 | else |
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82 | this%is_master_task = .false. |
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83 | end if |
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84 | |
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85 | end subroutine open_netcdf_file |
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86 | |
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87 | |
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88 | !--------------------------------------------------------------------- |
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89 | ! Close the NetCDF file |
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90 | subroutine close_netcdf_file(this) |
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91 | class(netcdf_file) :: this |
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92 | integer :: istatus |
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93 | |
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94 | if (this%is_master_task) then |
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95 | call this%file%close() |
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96 | end if |
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97 | |
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98 | end subroutine close_netcdf_file |
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99 | |
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100 | |
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101 | !--------------------------------------------------------------------- |
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102 | ! Set the verbosity level from 0 to 5, where the codes have the |
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103 | ! following meaning: 0=errors only, 1=warning, 2=info, 3=progress, |
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104 | ! 4=detailed, 5=debug |
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105 | subroutine set_verbose(this, ival) |
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106 | class(netcdf_file) :: this |
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107 | integer, optional :: ival |
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108 | |
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109 | if (present(ival)) then |
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110 | this%file%iverbose = ival |
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111 | else |
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112 | this%file%iverbose = 2 |
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113 | end if |
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114 | |
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115 | end subroutine set_verbose |
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116 | |
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117 | |
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118 | |
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119 | !--------------------------------------------------------------------- |
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120 | ! Specify whether 2D arrays should be transposed on read |
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121 | subroutine transpose_matrices(this, do_transpose) |
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122 | class(netcdf_file) :: this |
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123 | logical, optional :: do_transpose |
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124 | |
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125 | if (present(do_transpose)) then |
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126 | this%file%do_transpose_2d = do_transpose |
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127 | else |
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128 | this%file%do_transpose_2d = .true. |
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129 | end if |
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130 | |
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131 | end subroutine transpose_matrices |
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132 | |
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133 | |
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134 | |
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135 | ! --- READING SUBROUTINES --- |
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136 | |
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137 | !--------------------------------------------------------------------- |
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138 | ! Return true if the variable is present, false otherwise |
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139 | function exists(this, var_name) result(is_present) |
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140 | |
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141 | USE MPL_MODULE, ONLY : MPL_BROADCAST, MPL_NPROC |
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142 | |
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143 | class(netcdf_file) :: this |
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144 | character(len=*), intent(in) :: var_name |
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145 | |
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146 | logical :: is_present |
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147 | |
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148 | if (this%is_master_task) then |
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149 | is_present = this%file%exists(var_name) |
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150 | end if |
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151 | |
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152 | if (MPL_NPROC() > 1) then |
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153 | CALL MPL_BROADCAST(is_present, mtagrad, 1, & |
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154 | & CDSTRING='EASY_NETCDF_READ_MPI:EXISTS') |
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155 | end if |
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156 | |
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157 | end function exists |
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158 | |
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159 | |
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160 | !--------------------------------------------------------------------- |
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161 | ! The method "get" will read either a scalar, vector or matrix |
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162 | ! depending on the rank of the output argument. This version reads a |
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163 | ! scalar. |
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164 | subroutine get_real_scalar(this, var_name, scalar) |
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165 | |
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166 | USE MPL_MODULE, ONLY : MPL_BROADCAST, MPL_NPROC |
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167 | |
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168 | class(netcdf_file) :: this |
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169 | character(len=*), intent(in) :: var_name |
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170 | real(jprb), intent(out) :: scalar |
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171 | |
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172 | if (this%is_master_task) then |
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173 | call this%file%get(var_name, scalar) |
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174 | end if |
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175 | |
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176 | if (MPL_NPROC() > 1) then |
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177 | CALL MPL_BROADCAST(scalar, mtagrad, 1, & |
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178 | & CDSTRING='EASY_NETCDF_READ_MPI:GET_REAL_SCALAR') |
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179 | end if |
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180 | |
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181 | end subroutine get_real_scalar |
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182 | |
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183 | |
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184 | !--------------------------------------------------------------------- |
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185 | ! Read a 1D array into "vector", which must be allocatable and will |
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186 | ! be reallocated if necessary |
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187 | subroutine get_real_vector(this, var_name, vector) |
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188 | |
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189 | USE MPL_MODULE, ONLY : MPL_BROADCAST, MPL_NPROC |
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190 | |
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191 | class(netcdf_file) :: this |
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192 | character(len=*), intent(in) :: var_name |
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193 | real(jprb), allocatable, intent(out) :: vector(:) |
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194 | |
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195 | integer :: n ! Length of vector |
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196 | |
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197 | n = 0 |
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198 | |
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199 | if (this%is_master_task) then |
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200 | call this%file%get(var_name, vector) |
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201 | n = size(vector) |
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202 | end if |
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203 | |
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204 | if (MPL_NPROC() > 1) then |
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205 | CALL MPL_BROADCAST(n, mtagrad, 1, & |
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206 | & CDSTRING='EASY_NETCDF_READ_MPI:GET_REAL_VECTOR:SIZE') |
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207 | |
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208 | if (.not. this%is_master_task) then |
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209 | allocate(vector(n)) |
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210 | end if |
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211 | |
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212 | CALL MPL_BROADCAST(vector, mtagrad, 1, & |
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213 | & CDSTRING='EASY_NETCDF_READ_MPI:GET_REAL_VECTOR') |
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214 | end if |
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215 | |
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216 | end subroutine get_real_vector |
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217 | |
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218 | |
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219 | !--------------------------------------------------------------------- |
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220 | ! Read 2D array into "matrix", which must be allocatable and will be |
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221 | ! reallocated if necessary. Whether to transpose is specifed by the |
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222 | ! final optional argument, but can also be specified by the |
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223 | ! do_transpose_2d class data member. |
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224 | subroutine get_real_matrix(this, var_name, matrix, do_transp) |
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225 | |
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226 | USE MPL_MODULE, ONLY : MPL_BROADCAST, MPL_NPROC |
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227 | |
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228 | class(netcdf_file) :: this |
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229 | character(len=*), intent(in) :: var_name |
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230 | real(jprb), allocatable, intent(out) :: matrix(:,:) |
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231 | logical, optional, intent(in):: do_transp ! Transpose data? |
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232 | |
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233 | integer :: n(2) |
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234 | |
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235 | n = 0 |
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236 | |
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237 | if (this%is_master_task) then |
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238 | call this%file%get(var_name, matrix, do_transp) |
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239 | n = shape(matrix) |
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240 | end if |
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241 | |
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242 | if (MPL_NPROC() > 1) then |
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243 | CALL MPL_BROADCAST(n, mtagrad, 1, & |
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244 | & CDSTRING='EASY_NETCDF_READ_MPI:GET_REAL_MATRIX:SIZE') |
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245 | |
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246 | if (.not. this%is_master_task) then |
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247 | allocate(matrix(n(1),n(2))) |
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248 | end if |
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249 | |
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250 | CALL MPL_BROADCAST(matrix, mtagrad, 1, & |
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251 | & CDSTRING='EASY_NETCDF_READ_MPI:GET_REAL_MATRIX') |
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252 | end if |
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253 | |
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254 | end subroutine get_real_matrix |
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255 | |
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256 | |
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257 | !--------------------------------------------------------------------- |
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258 | ! Read 3D array into "var", which must be allocatable and will be |
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259 | ! reallocated if necessary. Whether to pemute is specifed by the |
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260 | ! final optional argument |
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261 | subroutine get_real_array3(this, var_name, var, ipermute) |
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262 | |
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263 | USE MPL_MODULE, ONLY : MPL_BROADCAST, MPL_NPROC |
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264 | |
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265 | class(netcdf_file) :: this |
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266 | character(len=*), intent(in) :: var_name |
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267 | real(jprb), allocatable, intent(out) :: var(:,:,:) |
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268 | integer, optional, intent(in) :: ipermute(3) |
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269 | |
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270 | integer :: n(3) |
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271 | |
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272 | n = 0 |
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273 | |
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274 | if (this%is_master_task) then |
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275 | call this%file%get(var_name, var, ipermute) |
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276 | n = shape(var) |
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277 | end if |
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278 | |
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279 | if (MPL_NPROC() > 1) then |
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280 | CALL MPL_BROADCAST(n, mtagrad, 1, & |
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281 | & CDSTRING='EASY_NETCDF_READ_MPI:GET_REAL_ARRAY3:SIZE') |
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282 | |
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283 | if (.not. this%is_master_task) then |
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284 | allocate(var(n(1),n(2),n(3))) |
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285 | end if |
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286 | |
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287 | CALL MPL_BROADCAST(var, mtagrad, 1, & |
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288 | & CDSTRING='EASY_NETCDF_READ_MPI:GET_REAL_ARRAY3') |
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289 | end if |
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290 | |
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291 | end subroutine get_real_array3 |
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292 | |
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293 | |
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294 | !--------------------------------------------------------------------- |
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295 | ! Get a global attribute as a character string |
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296 | subroutine get_global_attribute(this, attr_name, attr_str) |
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297 | |
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298 | USE MPL_MODULE, ONLY : MPL_BROADCAST, MPL_NPROC |
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299 | |
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300 | class(netcdf_file) :: this |
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301 | |
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302 | character(len=*), intent(in) :: attr_name |
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303 | character(len=*), intent(inout) :: attr_str |
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304 | |
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305 | if (this%is_master_task) then |
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306 | call this%file%get_global_attribute(attr_name, attr_str) |
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307 | end if |
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308 | |
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309 | if (MPL_NPROC() > 1) then |
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310 | CALL MPL_BROADCAST(attr_str, mtagrad, 1, & |
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311 | & CDSTRING='EASY_NETCDF_READ_MPI:GET_GLOBAL_ATTRIBUTE') |
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312 | end if |
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313 | |
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314 | end subroutine get_global_attribute |
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315 | |
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316 | end module easy_netcdf_read_mpi |
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