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makelmdz @ 5403

Last change on this file since 5403 was 5202, checked in by Laurent Fairhead, 3 months ago
Updating cirrus branch to trunk revision 5171
Property copyright set to Name of program: LMDZ Creation date: 1984 Version: LMDZ5 License: CeCILL version 2 Holder: Laboratoire de m\'et\'eorologie dynamique, CNRS, UMR 8539 See the license file in the root directory Property svn:executable set to ``*
File size: 25.5 KB

Rev	Line
[1463]	1	#!/bin/bash
	2	#
[1695]	3	# $Id$
[1463]	4	#
	5	#
	6	########################################################################
	7	# for debug, uncomment line below
	8	#set -xv
	9	########################################################################
	10	# options par defaut pour la commande make
	11	########################################################################
	12	dim="96x72x19"
	13	physique=lmd
	14	code=gcm
	15	filtre=filtrez
	16	grille=reg
	17	couple=false
	18	veget=false
[4567]	19	inlandsis=false
	20	rrtm=false
	21	rad="oldrad"
	22	dust=false
	23	strataer=false
[1463]	24	chimie=false
	25	parallel=none
[3997]	26	paramem="mem"
[1463]	27	compil_mod=prod
	28	io=ioipsl
	29	LIBPREFIX=""
	30	fcm_path=none
	31	cosp=false
[3359]	32	cosp2=false
[3491]	33	cospv2=false
[5202]	34	force_compile=false
[4567]	35
[5202]	36
[2112]	37	full=""
[1463]	38
[2743]	39	arch_defined="FALSE"
	40	arch_path="arch"
	41	arch_default_path="arch"
	42
[1463]	43	# guess a default 'arch'
[1690]	44	arch="local" # start with assuming we're on a local machine with local arch file
[2746]	45	arch_defined="TRUE" # and thus also set arch_defined to true
[1463]	46	## try to recognise machine and infer arch from it
	47	machine=`hostname`
[3574]	48	if [[ "${machine:0:4}" == "jean" ]]
[1463]	49	then
[3574]	50	arch="X64_JEANZAY"
[1463]	51	fi
	52	if [[ "${machine:0:7}" == "platine" ]]
	53	then
	54	arch="IA64_PLATINE"
	55	fi
	56	if [[ "${machine:0:6}" == "titane" ]]
	57	then
	58	arch="X64_TITANE"
	59	fi
	60	if [[ "${machine:0:8}" == "mercure1" ]]
	61	then
	62	arch="SX8_MERCURE"
	63	fi
	64	if [[ "${machine:0:8}" == "mercure2" ]]
	65	then
	66	arch="SX9_MERCURE"
	67	fi
	68
	69	LMDGCM=`pwd -P`
	70	LIBFGCM=$LMDGCM/libf
	71	LIBOGCM=$LMDGCM/libo
	72	if [[ ! -d $LIBOGCM ]]
	73	then
	74	# create the directory
	75	mkdir $LIBOGCM
	76	if [[ ! $? ]]
	77	then
	78	echo "Failed to create directory $LIBOGCM"
	79	exit
	80	fi
	81	fi
[3232]	82	#COSP_PATH=$LMDGCM/.void_dir
[1463]	83
	84
	85
	86	localdir=`pwd -P`
	87	########################################################################
	88	# Quelques initialisations de variables du shell.
	89	########################################################################
	90
[3835]	91	CPP_KEY="IN_LMDZ"
[2239]	92	INCLUDE='-I$(LIBF)/grid -I$(LIBF)/misc -I$(LIBF)/filtrez -I. '
[1463]	93	LIB=""
	94	adjnt=""
	95	##COMPIL_FFLAGS="%PROD_FFLAGS"
	96	PARA_FFLAGS=""
	97	PARA_LD=""
	98	EXT_SRC=""
[2238]	99	#src_dirs: directories containing source files
[2239]	100	src_dirs="grid misc"
[1463]	101	########################################################################
	102	# lecture des options
	103	########################################################################
	104
	105	while (($# > 0))
	106	do
	107	case $1 in
	108	"-h") cat <<fin
	109	Usage :
[1772]	110	makelmdz [options] -arch nom_arch exec
	111	[-h] : brief help
	112	[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim)
	113	[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
	114	[-prod / -dev / -debug] : compilation mode production (default) / developement / debug
[4567]	115	[-c false/MPI1/OMCT] : coupling with ocean model : MPI1/OMCT/false (default: false)
[4283]	116	[-v false/orchideetrunk/orchidee2.1/orchidee2.0/orchidee1.9] : version of the vegetation model to include (default: false)
[1772]	117	false : no vegetation model
[4283]	118	orchideetrunk : compile using ORCHIDEE trunk from revision 7757 or higher
	119	orchidee2.1 : compile using ORCHIDEE 2.1 until 4.1 included or until revision 7757 on the trunk
[4567]	120	orchidee2.0 : compile using ORCHIDEE 2.0
[1772]	121	orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
	122	true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
	123	[-chimie INCA/false] : with INCA chemistry model or without (default: false)
[2238]	124	[-cosp true/false] : compile with/without cosp package (default: false)
[3359]	125	[-cosp2 true/false] : compile with/without cosp2 package (default: false)
[3491]	126	[-cospv2 true/false] : compile with/without cospv2 package (default: false)
[3793]	127	[-inlandsis true/false] : compile with/without inlandsis package (default: false)
[2238]	128	[-rrtm true/false] : compile with/without rrtm package (default: false)
[4408]	129	[-rad oldrad/rrtm/ecrad] : compile with oldrad/rrtm/ecrad radiatif code (default: oldrad)
[4567]	130	[-dust true/false] : compile with/without the dust package by Boucher and co (default: false)
	131	[-strataer true/false] : compile with/without the strat aer package by Boucher and co (default: false)
[1772]	132	[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
	133	[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
[2097]	134	[-io ioipsl/mix/xios] : Input/Output library (default: ioipsl)
[1772]	135	[-include INCLUDES] : extra include path to add
	136	[-cpp CPP_KEY] : additional preprocessing definitions
	137	[-adjnt] : adjoint model, not operational ...
[3997]	138	[-mem] : reduced memory dynamics (obsolete flag; always on in parallel mode)
[1772]	139	[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
	140	[-link LINKS] : additional links with other libraries
[4567]	141	[-full] : full recompiling
[1772]	142	[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
	143	[-ext_src path] : path to an additional set of routines to compile with the model
[2743]	144	[-arch_path path] : path to architecture files (default: $arch_default_path)
[5202]	145	[-force_compile] : recompile although there seems to be an on-going compilation
[1772]	146	-arch nom_arch : target architecture
	147	exec : executable to build
[1463]	148	fin
	149	exit;;
	150	"-d")
	151	dim=$2 ; shift ; shift ;;
	152
	153	"-p")
	154	physique="$2" ; shift ; shift ;;
	155
	156	"-g")
	157	grille="$2" ; shift ; shift ;;
	158
	159	"-c")
	160	couple="$2" ; shift ; shift ;;
	161
	162	"-prod")
	163	compil_mod="prod" ; shift ;;
	164
	165	"-dev")
	166	compil_mod="dev" ; shift ;;
	167
	168	"-debug")
	169	compil_mod="debug" ; shift ;;
	170
	171	"-io")
	172	io="$2" ; shift ; shift ;;
	173
	174	"-v")
	175	veget="$2" ; shift ; shift ;;
	176
[4567]	177	"-inlandsis")
	178	inlandsis="$2" ; shift ; shift ;;
	179
	180	"-rrtm")
	181	rrtm="$2" ; if [ "$2" = "false" ] ; then rad="oldrad" ; else rad="rrtm" ; fi ; shift ; shift ;;
	182
	183	"-rad")
	184	rad="$2" ; shift ; shift ;;
	185
	186	"-dust")
	187	dust="$2" ; shift ; shift ;;
	188
	189	"-strataer")
	190	strataer="$2" ; shift ; shift ;;
	191
[1463]	192	"-chimie")
	193	chimie="$2" ; shift ; shift ;;
	194
	195	"-parallel")
	196	parallel="$2" ; shift ; shift ;;
	197
	198	"-include")
	199	INCLUDE="$INCLUDE -I$2" ; shift ; shift ;;
	200
	201	"-cpp")
	202	CPP_KEY="$CPP_KEY $2" ; shift ; shift ;;
	203
	204	"-cosp")
	205	cosp="$2" ; shift ; shift ;;
[3359]	206
	207	"-cosp2")
	208	cosp2="$2" ; shift ; shift ;;
[3491]	209
[4567]	210	"-cospv2")
[3491]	211	cospv2="$2" ; shift ; shift ;;
[1690]	212
	213	"-mem")
[3997]	214	echo "option -mem is obsolete (now always on in parallel)"
[1690]	215	paramem="mem" ; shift ;;
[1463]	216
	217	"-filtre")
	218	filtre=$2 ; shift ; shift ;;
	219
	220	"-link")
	221	LIB="$LIB $2" ; shift ; shift ;;
	222
	223	"-fcm_path")
	224	fcm_path=$2 ; shift ; shift ;;
	225
	226	"-ext_src")
[2238]	227	EXT_SRC=$2 ; src_dirs="$src_dirs $EXT_SRC" ; shift ; shift ;;
[1463]	228
[4567]	229	"-full")
	230	full="full" ; shift ;;
	231
[1463]	232	"-arch")
[2743]	233	arch=$2 ; arch_defined="TRUE" ; shift ; shift ;;
[1463]	234
[2743]	235	"-arch_path")
	236	arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;;
	237
[5202]	238	"-force_compile")
	239	force_compile=true ; shift ;;
	240
[1463]	241	*)
	242	code="$1" ; shift ;;
	243	esac
	244	done
	245
	246	###############################################################
[2098]	247	# lecture des chemins propres \`a l'architecture de la machine #
[1463]	248	###############################################################
	249	rm -f .void_file
	250	echo > .void_file
	251	rm -rf .void_dir
	252	mkdir .void_dir
[2743]	253
	254	if [[ "$arch_defined" == "TRUE" ]]
[1463]	255	then
[2743]	256	rm -f arch.path
	257	rm -f arch.fcm
	258	rm -f arch.env
	259
	260	if test -f $arch_path/arch-${arch}.path
	261	then
	262	ln -s $arch_path/arch-${arch}.path arch.path
	263	elif test -f $arch_default_path/arch-${arch}.path
	264	then
	265	ln -s $arch_default_path/arch-${arch}.path arch.path
	266	fi
	267
	268	if test -f $arch_path/arch-${arch}.fcm
	269	then
	270	ln -s $arch_path/arch-${arch}.fcm arch.fcm
	271	elif test -f $arch_default_path/arch-${arch}.fcm
	272	then
	273	ln -s $arch_default_path/arch-${arch}.fcm arch.fcm
	274	fi
	275
	276	if test -f $arch_path/arch-${arch}.env
	277	then
	278	ln -s $arch_path/arch-${arch}.env arch.env
	279	elif test -f $arch_default_path/arch-${arch}.env
	280	then
	281	ln -s $arch_default_path/arch-${arch}.env arch.env
	282	else
	283	ln -s .void_file arch.env
	284	fi
	285	# source architecture PATH and ENV files
	286	source arch.env
[1463]	287	source arch.path
	288	else
[2743]	289	echo "You must define a target architecture"
	290	exit 1
[1463]	291	fi
[2743]	292
[1463]	293	########################################################################
	294	# Definition des clefs CPP, des chemins des includes et modules
	295	# et des libraries
	296	########################################################################
	297
	298	# basic compile flags from arch.fcm file
	299	archfileline=$( grep -i '^%BASE_FFLAGS' arch.fcm )
	300	COMPIL_FFLAGS=$( echo ${archfileline##%BASE_FFLAGS} )
	301
	302	# other compile flags, depending on compilation mode
	303	if [[ "$compil_mod" == "prod" ]]
	304	then
	305	## read COMPIL_FFLAGS from arch.fcm file
	306	archfileline=$( grep -i '^%PROD_FFLAGS' arch.fcm )
	307	archfileopt=$( echo ${archfileline##%PROD_FFLAGS} )
	308	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	309	elif [[ "$compil_mod" == "dev" ]]
	310	then
	311	## read %DEV_FFLAGS from arch.fcm file
	312	archfileline=$( grep -i '^%DEV_FFLAGS' arch.fcm )
	313	archfileopt=$( echo ${archfileline##%DEV_FFLAGS} )
	314	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	315	elif [[ "$compil_mod" == "debug" ]]
	316	then
	317	## read %DEBUG_FFLAGS from arch.fcm file
	318	archfileline=$( grep -i '^%DEBUG_FFLAGS' arch.fcm )
	319	archfileopt=$( echo ${archfileline##%DEBUG_FFLAGS} )
	320	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	321	fi
	322
	323	# add CPP_KEY defined in arch.fcm file
	324	archfileline=$( grep -i '^%FPP_DEF' arch.fcm )
	325	archfileopt=$( echo ${archfileline##%FPP_DEF} )
	326	CPP_KEY="$CPP_KEY ${archfileopt}"
	327
	328	# get compiler name from arch.fcm file
	329	archfileline=$( grep -i '^%COMPILER' arch.fcm )
	330	fcompiler=$( echo ${archfileline##%COMPILER} )
	331
	332	# get linker name from arch.fcm file
	333	archfileline=$( grep -i '^%LINK' arch.fcm )
	334	linker=$( echo ${archfileline##%LINK} )
	335
	336	# get ar command from arch.fcm file
[3045]	337	archfileline=$( grep -i '^%AR ' arch.fcm )
[1463]	338	arcommand=$( echo ${archfileline##%AR} )
	339
[3045]	340	# get ar command options from arch.fcm file
	341	archfileline=$( grep -i '^%ARFLAGS' arch.fcm )
[3051]	342	arflags=$( echo ${archfileline##%ARFLAGS} )
[3045]	343
[1463]	344	# get make utility from arch.fcm file
	345	archfileline=$( grep -i '^%MAKE' arch.fcm )
	346	makecommand=$( echo ${archfileline##%MAKE} )
	347
	348	# get basic libraries to link with arch.fcm file
	349	archfileline=$( grep -i '^%BASE_LD' arch.fcm )
	350	archfileopt=$( echo ${archfileline##%BASE_LD} )
	351	LIB="$LIB ${archfileopt}"
	352
[1873]	353	# add Include files defined in arch.fcm file for pre-processing
	354	archfileline=$( grep -i '^%FPP_FLAGS' arch.fcm )
	355	for inc in $archfileline ; do INCLUDE="$INCLUDE `echo $inc \| grep '\-I'`" ; done
	356
[2250]	357	phys_root=$physique
	358	if [[ "${physique:0:3}" == "lmd" ]] ; then phys_root=lmd ; fi
	359	if [[ "${physique:0:4}" == "mars" ]] ; then phys_root=mars ; fi
	360	if [[ "${physique:0:3}" == "std" ]] ; then phys_root=std ; fi
	361	if [[ "${physique:0:5}" == "venus" ]] ; then phys_root=venus ; fi
	362	if [[ "${physique:0:5}" == "titan" ]] ; then phys_root=titan ; fi
	363	if [[ "${physique:0:3}" == "dev" ]] ; then phys_root=dev ; fi
	364
[1463]	365	if [[ "$physique" != "nophys" ]]
	366	then
[1690]	367	#We'll use some physics
[2326]	368	src_dirs="$src_dirs phy_common phy$physique"
[2239]	369	LIBPHY='$(LIBO)/libphy'"$physique"'.a'
[2326]	370	LIBPHY_COMMON='$(LIBO)/libphy_common.a'
	371	lib_phy='-lphy'"$physique"' -lphy_common'
[1690]	372	CPP_KEY="$CPP_KEY CPP_PHYS"
[4567]	373	if [[ "${phys_root}" == "lmd" ]]
	374	then
	375	#For lmd physics, default planet type is Earth
	376	CPP_KEY="$CPP_KEY CPP_EARTH"
[1690]	377	fi
[1463]	378	fi
	379
	380	if [[ "$chimie" == "INCA" ]]
	381	then
	382	CPP_KEY="$CPP_KEY INCA"
[4426]	383	INCLUDE="$INCLUDE ${INCA_INCDIR}"
	384	LIB="$LIB ${INCA_LIBDIR} ${INCA_LIB}"
	385	libchimie=" ${INCA_LIBDIR} ${INCA_LIB}"
[1463]	386	fi
	387
	388	if [[ "$couple" != "false" ]]
	389	then
	390	CPP_KEY="$CPP_KEY CPP_COUPLE"
[4426]	391	INCLUDE="$INCLUDE ${OASIS_INCDIR}"
	392	LIB="$LIB ${OASIS_LIBDIR} ${OASIS_LIB}"
[1463]	393	fi
	394
	395	if [[ "$parallel" == "none" ]]
	396	then
	397	FLAG_PARA=''
	398	else
[1810]	399	FLAG_PARA="$paramem"
[2202]	400	if [[ $paramem == par ]]
	401	then
	402	echo "The version of the dynamics in dyn3dpar is no longer updated."
	403	echo "You should use option \"-mem\"."
	404	exit 1
[2238]	405	fi
[1463]	406	fi
	407
	408	if [[ "$parallel" == "mpi" ]]
	409	then
	410	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI"
	411	# MPI additional compilation options
	412	archfileline=$( grep -i '^%MPI_FFLAGS' arch.fcm )
	413	PARA_FFLAGS=$( echo ${archfileline##%MPI_FFLAGS} )
	414	# MPI additional links
	415	archfileline=$( grep -i '^%MPI_LD' arch.fcm )
	416	PARA_LD=$( echo ${archfileline##%MPI_LD} )
	417	elif [[ "$parallel" == "omp" ]]
	418	then
	419	CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP"
	420	# OMP additional compilation options
	421	archfileline=$( grep -i '^%OMP_FFLAGS' arch.fcm )
	422	PARA_FFLAGS=$( echo ${archfileline##%OMP_FFLAGS} )
	423	# OMP additional links
	424	archfileline=$( grep -i '^%OMP_LD' arch.fcm )
	425	PARA_LD=$( echo ${archfileline##%OMP_LD} )
	426	elif [[ "$parallel" == "mpi_omp" ]]
	427	then
	428	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP"
	429	# MPI additional compilation options
	430	archfileline=$( grep -i '^%MPI_FFLAGS' arch.fcm )
	431	PARA_FFLAGS=$( echo ${archfileline##%MPI_FFLAGS} )
	432	# OMP additional compilation options
	433	archfileline=$( grep -i '^%OMP_FFLAGS' arch.fcm )
	434	PARA_FFLAGS="${PARA_FFLAGS} "$( echo $archfileopt ${archfileline##%OMP_FFLAGS} )
	435	# MPI additional links
	436	archfileline=$( grep -i '^%MPI_LD' arch.fcm )
	437	PARA_LD=$( echo ${archfileline##%MPI_LD} )
	438	# OMP additional links
	439	archfileline=$( grep -i '^%OMP_LD' arch.fcm )
	440	PARA_LD="${PARA_LD} "$( echo $archfileopt ${archfileline##%OMP_LD} )
	441	fi
	442
	443	if [[ ( "$parallel" == "omp" \|\| "$parallel" == "mpi_omp" ) \
	444	&& "$compil_mod" == "debug" ]]
	445	then
	446	echo "Usually, parallelization with OpenMP requires some optimization."
	447	echo "We suggest switching to \"-dev\"."
	448	fi
	449
[1810]	450
	451	#==============================================================================
[4283]	452	if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" -o "$veget" = "orchidee2.1" -o "$veget" = "orchideetrunk" ]
[1463]	453	then
[1810]	454
[4426]	455	INCLUDE="${INCLUDE} ${ORCH_INCDIR}"
[1772]	456	CPP_KEY="$CPP_KEY CPP_VEGET"
[1810]	457	# temporary, for Orchidee versions 1.9.* (before openmp activation)
	458	if [[ "$veget" == "orchidee1.9" ]] ; then
	459	CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP"
	460	fi
	461	if [[ "$veget" == "orchidee2.0" ]] ; then
[4426]	462	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob -lorchidee"
[3435]	463	CPP_KEY="$CPP_KEY ORCHIDEE_NOUNSTRUCT"
	464	elif [[ "$veget" == "orchidee2.1" ]] ; then
[4283]	465	CPP_KEY="$CPP_KEY ORCHIDEE_NOLIC"
[4426]	466	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob -lorchidee"
[4283]	467	elif [[ "$veget" == "orchideetrunk" ]] ; then
[4426]	468	orch_libs="-lorchidee"
[1810]	469	else
[4426]	470	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob"
[1810]	471	fi
[4426]	472	LIB="${LIB} ${ORCH_LIBDIR} ${orch_libs}"
	473	# for lib in ${orch_libs} ; do
	474	# if [ -f ${ORCH_LIBDIR}/lib${LIBPREFIX}$lib.a ] ; then
	475	# LIB="${LIB} -l${LIBPREFIX}$lib "
	476	# fi
	477	# done
[1810]	478	elif [[ "$veget" != "false" ]] ; then
[1772]	479	echo "Option -v $veget does not exist"
	480	echo "Use ./makelmdz -h for more information"
	481	exit
[1463]	482	fi
	483
[4567]	484	if [[ "$inlandsis" == "true" ]]
	485	then
	486	CPP_KEY="$CPP_KEY CPP_INLANDSIS"
	487	src_dirs="$src_dirs phy${physique}/inlandsis"
	488	fi
	489
	490
	491	if [[ "$rad" == "rrtm" ]]
	492	then
	493	CPP_KEY="$CPP_KEY CPP_RRTM"
	494	src_dirs="$src_dirs phy${physique}/rrtm"
	495	fi
	496	if [[ "$rad" == "ecrad" ]]
	497	then
	498	CPP_KEY="$CPP_KEY CPP_ECRAD"
	499	src_dirs="$src_dirs phy${physique}/ecrad"
	500	fi
	501
	502	if [[ "$dust" == "true" ]]
	503	then
	504	CPP_KEY="$CPP_KEY CPP_Dust"
	505	src_dirs="$src_dirs phy${physique}/Dust"
	506	fi
	507
	508	if [[ "$strataer" == "true" ]]
	509	then
	510	CPP_KEY="$CPP_KEY CPP_StratAer"
	511	src_dirs="$src_dirs phy${physique}/StratAer"
	512	fi
	513
[1810]	514	#===============================================================================
[4489]	515	INCLUDE="$INCLUDE ${NETCDF95_INCDIR}"
	516	LIB="$LIB ${NETCDF95_LIBDIR} -l${LIBPREFIX}netcdf95"
	517
[1463]	518	if [[ $io == ioipsl ]]
	519	then
	520	CPP_KEY="$CPP_KEY CPP_IOIPSL"
[4426]	521	INCLUDE="$INCLUDE ${IOIPSL_INCDIR}"
	522	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl"
[2097]	523	elif [[ $io == mix ]]
[1897]	524	then
	525	# For now, xios implies also using ioipsl
	526	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS"
[4426]	527	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
	528	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl ${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios -l${LIBPREFIX}stdc++"
[2097]	529	elif [[ $io == xios ]]
	530	then
	531	# For now, xios implies also using ioipsl
	532	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS CPP_IOIPSL_NO_OUTPUT"
[4426]	533	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
	534	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl ${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios -l${LIBPREFIX}stdc++"
[1463]	535	fi
	536
	537	if [[ "$cosp" == "true" ]]
	538	then
	539	CPP_KEY="$CPP_KEY CPP_COSP"
[3232]	540	# COSP_PATH="$LIBFGCM/phylmd/cosp"
	541	src_dirs="$src_dirs phy${physique}/cosp"
[1463]	542	# LIB="${LIB} -l${LIBPREFIX}cosp"
[3232]	543	# opt_dep="$opt_dep cosp"
	544	# lcosp="-l${LIBPREFIX}cosp"
	545	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cosp'
[1463]	546	fi
	547
[3359]	548	if [[ "$cosp2" == "true" ]]
	549	then
	550	CPP_KEY="$CPP_KEY CPP_COSP2"
	551	src_dirs="$src_dirs phy${physique}/cosp2"
	552	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cosp2'
	553	fi
	554
[3491]	555	if [[ "$cospv2" == "true" ]]
	556	then
	557	CPP_KEY="$CPP_KEY CPP_COSPV2"
	558	src_dirs="$src_dirs phy${physique}/cospv2"
	559	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cospv2'
	560	fi
[3359]	561
[3491]	562
[3793]	563
[3835]	564	#add new ocean skin modelisation to source dir by default
[2690]	565
[3835]	566	src_dirs="$src_dirs phy${physique}/Ocean_skin"
	567
	568
[1551]	569	INCLUDE="$INCLUDE ${NETCDF_INCDIR}"
[4426]	570	LIB="$LIB ${NETCDF_LIBDIR} ${NETCDF_LIB}"
[1463]	571
	572	########################################################################
	573	# calcul du nombre de dimensions
	574	########################################################################
	575
	576
	577	dim_full=$dim
	578	dim=`echo $dim \| sed -e 's/[^0-9]/ /g'`
	579	set $dim
	580	dimc=$#
	581	echo calcul de la dimension
	582	echo dim $dim
	583	echo dimc $dimc
	584
	585	########################################################################
	586	# Gestion des dimensions du modele.
	587	# on cree ou remplace le fichier des dimensions
	588	########################################################################
	589
[1695]	590	cd $LIBFGCM/grid
	591	if [[ -f dimensions.h ]]
	592	then
[5202]	593	if [[ $force_compile == true ]]
	594	then
	595	\rm -f $LIBFGCM/grid/dimensions.h
	596	else
	597	echo "WARNING: you are probably already compiling the model somewhere else."
	598	echo "Wait until the first compilation is finished before launching this one."
	599	echo "If you are sure that you are not compiling elsewhere, "
	600	echo "If you are sure that you are not compiling elsewhere, then"
	601	echo rm -f $LIBFGCM/grid/dimensions.h
	602	echo "before reruning the compilation"
	603	echo "or run makelmdz with option -force_compile"
	604	exit 1
	605	fi
[1695]	606	fi
	607
[5202]	608
[1463]	609	cd $LIBFGCM/grid/dimension
	610	./makdim $dim
	611	cat $LIBFGCM/grid/dimensions.h
	612	cd $LMDGCM
	613
	614	########################################################################
	615	# Differentes dynamiques (3d, 2d, 1d)
	616	########################################################################
	617
[1810]	618	if (( $dimc == 3 )) ; then
[2238]	619	src_dirs="$src_dirs $filtre dyn3d_common dyn3d${FLAG_PARA}"
[2239]	620	if [[ $physique != "nophys" ]] ; then
[2417]	621	src_dirs="$src_dirs dynphy_lonlat dynphy_lonlat/phy${phys_root}"
	622	libdyn_phy="-ldynphy_lonlat"
	623	LIBDYN_PHYS='$(LIBO)/libdynphy_lonlat.a'
	624	INCLUDE="$INCLUDE "'-I$(LIBF)/dynphy_lonlat'
	625	INCLUDE="$INCLUDE "'-I$(LIBF)/dynphy_lonlat/'"phy${phys_root}"
[2239]	626	fi
[1810]	627	cd $LIBFGCM/grid
	628	\rm fxyprim.h
	629	cp -p fxy_${grille}.h fxyprim.h
[1463]	630	filtre="FILTRE=$filtre"
[2016]	631	INCLUDE="$INCLUDE "'-I$(LIBF)/dyn3d${FLAG_PARA} -I$(LIBF)/dyn3d_common '
[1810]	632	elif (( $dimc == 2 )) ; then
[2239]	633	src_dirs="$src_dirs dyn2d"
[1810]	634	filtre="FILTRE= L_FILTRE= "
	635	INCLUDE="$INCLUDE "'-I$(LIBF)/dyn2d'
	636	elif (( $dimc == 1 )) ; then
[2239]	637	#src_dirs="$src_dirs dyn3d dyn3d_common filtrez"
	638	src_dirs="$src_dirs phy${physique}/dyn1d"
[2023]	639	CPP_KEY="$CPP_KEY CPP_1D"
[2239]	640	filtre="L_DYN= DYN= FILTRE= L_FILTRE= "
	641	#INCLUDE="$INCLUDE "'-I$(LIBF)/dyn3d -I$(LIBF)/dyn3d_common ' # Pas tres propre
	642	INCLUDE="$INCLUDE "' -I$(LIBF)/phy'"$physique"'/dyn1d'
[1463]	643	else
[1810]	644	echo Dimension dimc=$dimc pas prevu ; exit
[1463]	645	fi
	646
	647	cd $LMDGCM
	648
[2112]	649	########################################################################
	650	# library directory name:
	651	########################################################################
[1463]	652
[4186]	653	nomlib=`echo ${arch}_${physique}_${rad}_${dim_full}_${grille}_${compil_mod}_parall${parallel}_${CPP_KEY}_${FLAG_PARA} \| sed -e 's/ //g' -e 's/-//g ' \| sed -e 's/CPP_//g'`
[2112]	654	echo "Path to library: "$nomlib
	655
[1463]	656	########################################################################
[2112]	657	# Cleanup for a full recompilation, if requested
	658	########################################################################
	659
	660	if [[ $full == "full" ]]
	661	then
	662	# remove makefile and librairies
	663	echo "-full option: recompiling from scratch"
	664	\rm -f makefile
	665	\rm -rf "${LIBOGCM}/${nomlib}"
	666	fi
	667
	668	########################################################################
[1463]	669	# Avant de lancer le make, on recree le makefile si necessaire
	670	########################################################################
	671	########################################################################
	672	# c'est a dire dans 3 cas:
	673	# 1. si la liste des fichiers .F et .h a ete modifiee depuis la
	674	# derniere creation du makefile
	675	# 2. si le fichier contenant cette liste "liste_des_sources"
	676	# n'existe pas.
	677	# 3. Si le makefile n'existe pas.
	678	########################################################################
	679	cd $LMDGCM
[1810]	680
[1463]	681
[2238]	682	if [[ -r .makelmdz ]]
[1463]	683	then
[2238]	684	old_lmdz_configuration=$(cat .makelmdz )
	685	else
	686	old_lmdz_configuration=""
	687	fi
	688	lmdz_configuration="$src_dirs"
	689	if [[ "$lmdz_configuration" != "$old_lmdz_configuration" ]]
	690	then
	691	configuration_change="true"
	692	else
	693	configuration_change="false"
	694	fi
	695
[2250]	696	mkdir -p make_dir
	697	suf_make=`echo $src_dirs \| sed -e 's/\//_/g' -e 's/ /_/g'`
	698	echo suf_make $suf_make
	699
[4085]	700	########################################################################
	701	# (re)Creation du makefile
	702	########################################################################
	703
	704	echo "Controle de la necessite de recreer le makefile"
[2250]	705	\rm tmp77 tmp90
	706	for dir in $src_dirs ; do
[4085]	707	# On recupere la liste de tous les subroutine, use et include pour
	708	# vérifier que les dépendense n'ont pas changé et reconstuire le
	709	# makefile le cas échéant
	710	# On enleve tout apres ONLy et on met un "uniq" pour que ca ne recrée pas
	711	# le makefile si on se contente d'ajouter des lignes dans le ONLY
[4377]	712	exclude="replay automatic include"
[4085]	713	for str in subroutine "use " "include " ; do
[4377]	714	grep -i "$str" libf/$dir/.[Fh] \| sed -e "/$exclude/d" \| cut -d\( -f1 \| sed -e 's/[Oo][Nn][Ll][Yy]..$//' \| uniq >> tmp77
	715	grep -i "$str" libf/$dir/.F90 \| sed -e "/$exclude/d" \| cut -d\( -f1 \| sed -e 's/[Oo][Nn][Ll][Yy]..$//' \| uniq >> tmp90
[4085]	716	done
[2250]	717	done
	718
	719	liste77=make_dir/liste_des_sources_f77_$suf_make
	720	liste90=make_dir/liste_des_sources_f90_$suf_make
	721	makefile=make_dir/makefile_$suf_make
	722
[2269]	723	if [[ $configuration_change == "true" \|\| ! ( -r $makefile ) \|\| ! ( -r $liste90 ) \|\| ! ( -r $liste77 ) \|\| ` diff tmp77 $liste77 \| wc -w ` -ne 0 \|\| ` diff tmp90 $liste90 \| wc -w ` -ne 0 ]]
[2238]	724	then
[1463]	725	echo "les fichiers suivants ont ete crees ou detruits"
	726	echo "ou les fichiers suivants sont passes ou ne sont plus en Fortran 90"
[2250]	727	diff $liste77 tmp77
	728	diff $liste90 tmp90
	729	\cp -f tmp77 $liste77
	730	\cp -f tmp90 $liste90
[2238]	731	echo "Recreating the makefile"
	732	echo "src_dirs: $src_dirs"
	733	./create_make_gcm $src_dirs > tmp
[2250]	734	\mv -f tmp $makefile
[2238]	735	echo "New makefile created"
[4085]	736	else
	737	echo Pas besoin de recreer le makefile
[1463]	738	fi
	739
[4085]	740
[2250]	741	ln -sf $makefile makefile
[2238]	742	echo "$lmdz_configuration" > .makelmdz
	743
[1463]	744	#################################################################
	745	# Preparation de l'execution de la comande make
	746	#################################################################
	747
	748	source_code=${code}.F
[2239]	749	dirmain=dyn${dimc}d${FLAG_PARA}
[1463]	750	if [[ -r $LMDGCM/libf/dyn${dimc}d${FLAG_PARA}/${code}.F90 ]]
	751	then
	752	source_code=${code}.F90
[2016]	753	elif [[ -r $LMDGCM/libf/phy$physique/${code}.F90 ]] ; then
[2239]	754	dirmain=phy$physique
[2016]	755	source_code=${code}.F90
[2417]	756	elif [[ -r $LMDGCM/libf/dynphy_lonlat/phy$phys_root/${code}.F90 ]] ; then
	757	dirmain="dynphy_lonlat/phy${phys_root}"
[2239]	758	source_code=${code}.F90
	759	elif [[ -r $LMDGCM/libf/phy$physique/dyn1d/${code}.F90 ]] ; then
	760	dirmain=phy$physique/dyn1d
	761	source_code=${code}.F90
[1463]	762	fi
	763
	764	if [[ ! -d "${LIBOGCM}/${nomlib}" ]]
	765	then
	766	mkdir ${LIBOGCM}/${nomlib}
	767	# check we indeed managed to create the directory
	768	if [[ ! $? ]]
	769	then
	770	echo "Error: could not create directory ${LIBOGCM}/${nomlib}"
	771	exit
	772	fi
	773	fi
	774
	775	# where module files are created
	776	mod_loc_dir=$localdir
	777
	778	if [[ "$physique" != "nophys" ]]
	779	then
	780	INCLUDE="$INCLUDE"' -I$(LIBF)/phy'"$physique"
	781	fi
[1810]	782	INCLUDE="$INCLUDE"' -I'${LIBOGCM}/${nomlib}
[1463]	783
	784	# ranlib utility (check it exists or else default to ls)
	785	if [[ `which ranlib > /dev/null 2>&1 ; echo $?` -eq 0 ]]
	786	then
	787	ranlib="ranlib"
	788	else
	789	ranlib="ls"
	790	fi
	791
	792	# add CPP keys to COMPIL_FLAGS
	793	# (but first add -D before all CPP_KEY items)
	794	cpp_definitions=`echo $CPP_KEY \| sed -e 's/[A-Za-z_=0-9]*/-D&/g'`
	795	# (but add a -WF,-D before all CPP_KEY items) => for xlf on Vargas
	796	if [[ "${fcompiler:0:3}" == "xlf" ]]
	797	then
	798	cpp_definitions=`echo $CPP_KEY \| sed -e 's/[A-Za-z_=0-9]*/-WF,-D&/g'`
	799	fi
	800	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${cpp_definitions}"
	801
	802	#################################################################
	803	# Execution du make
	804	#################################################################
[4567]	805	set -v
[1463]	806	$makecommand RANLIB=$ranlib -f $LMDGCM/makefile \
	807	OPTION_DEP="$opt_dep" OPTION_LINK="$LIB ${PARA_LD}" \
	808	OPTIM90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	809	OPTIMTRU90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	810	OPTIM="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	811	INCLUDE="$INCLUDE" \
	812	$filtre \
	813	LIBO=${LIBOGCM}/${nomlib} \
	814	"PHYS=$physique" \
[2239]	815	LIBPHY=${LIBPHY} \
[2326]	816	LIBPHY_COMMON=${LIBPHY_COMMON} \
[2239]	817	LIBDYN_PHYS=${LIBDYN_PHYS} \
[1463]	818	DIM=$dimc \
	819	FLAG_PARA=$FLAG_PARA \
[2239]	820	L_PHY="$lib_phy" \
	821	L_DYN_PHY="$libdyn_phy" \
[1810]	822	L_ADJNT=$adjnt \
[1463]	823	L_COSP="$lcosp" \
[3359]	824	L_COSP2="$lcosp2" \
[3491]	825	L_COSPV2="$lcospv2" \
[1463]	826	L_CHIMIE="$libchimie" \
	827	LOCAL_DIR="$localdir" \
	828	F77="$fcompiler" \
	829	F90="$fcompiler" \
	830	OPLINK="$LIB" \
	831	LINK="$linker" \
	832	GCM="$LMDGCM" \
	833	MOD_LOC_DIR=$mod_loc_dir \
	834	MOD_SUFFIX="mod" \
	835	AR=$arcommand \
[3051]	836	ARFLAGS="$arflags" \
[2239]	837	DIRMAIN=$dirmain \
[1463]	838	SOURCE=$source_code \
	839	PROG=$code
	840
[4567]	841	set +v
[1810]	842
[1696]	843	if [[ -r $LIBFGCM/grid/dimensions.h ]]
[1463]	844	then
	845	# Cleanup: remove dimension.h file
[1696]	846	\rm -f $LIBFGCM/grid/dimensions.h
[1463]	847	fi

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