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source: LMDZ6/branches/Ocean_skin/makelmdz @ 4251

Last change on this file since 4251 was 4013, checked in by lguez, 3 years ago
Sync latest trunk changes to Ocean_skin
Property copyright set to Name of program: LMDZ Creation date: 1984 Version: LMDZ5 License: CeCILL version 2 Holder: Laboratoire de m\'et\'eorologie dynamique, CNRS, UMR 8539 See the license file in the root directory Property svn:executable set to ``*
File size: 25.3 KB

Line
1	#!/bin/bash
2	#
3	# $Id$
4	#
5	#
6	########################################################################
7	# for debug, uncomment line below
8	#set -xv
9	########################################################################
10	# options par defaut pour la commande make
11	########################################################################
12	dim="96x72x19"
13	physique=lmd
14	code=gcm
15	filtre=filtrez
16	grille=reg
17	couple=false
18	veget=false
19	chimie=false
20	parallel=none
21	paramem="mem"
22	compil_mod=prod
23	io=ioipsl
24	LIBPREFIX=""
25	fcm_path=none
26	cosp=false
27	cosp2=false
28	cospv2=false
29	inlandsis=false
30	rrtm=false
31	rad=""
32	dust=false
33	strataer=false
34	full=""
35
36	arch_defined="FALSE"
37	arch_path="arch"
38	arch_default_path="arch"
39
40	# guess a default 'arch'
41	arch="local" # start with assuming we're on a local machine with local arch file
42	arch_defined="TRUE" # and thus also set arch_defined to true
43	## try to recognise machine and infer arch from it
44	machine=`hostname`
45	if [[ "${machine:0:4}" == "jean" ]]
46	then
47	arch="X64_JEANZAY"
48	fi
49	if [[ "${machine:0:7}" == "platine" ]]
50	then
51	arch="IA64_PLATINE"
52	fi
53	if [[ "${machine:0:6}" == "titane" ]]
54	then
55	arch="X64_TITANE"
56	fi
57	if [[ "${machine:0:8}" == "mercure1" ]]
58	then
59	arch="SX8_MERCURE"
60	fi
61	if [[ "${machine:0:8}" == "mercure2" ]]
62	then
63	arch="SX9_MERCURE"
64	fi
65
66	LMDGCM=`pwd -P`
67	LIBFGCM=$LMDGCM/libf
68	LIBOGCM=$LMDGCM/libo
69	if [[ ! -d $LIBOGCM ]]
70	then
71	# create the directory
72	mkdir $LIBOGCM
73	if [[ ! $? ]]
74	then
75	echo "Failed to create directory $LIBOGCM"
76	exit
77	fi
78	fi
79	#COSP_PATH=$LMDGCM/.void_dir
80
81
82
83	localdir=`pwd -P`
84	########################################################################
85	# Quelques initialisations de variables du shell.
86	########################################################################
87
88	CPP_KEY="IN_LMDZ"
89	INCLUDE='-I$(LIBF)/grid -I$(LIBF)/misc -I$(LIBF)/filtrez -I. '
90	LIB=""
91	adjnt=""
92	##COMPIL_FFLAGS="%PROD_FFLAGS"
93	PARA_FFLAGS=""
94	PARA_LD=""
95	EXT_SRC=""
96	#src_dirs: directories containing source files
97	src_dirs="grid misc"
98	########################################################################
99	# lecture des options
100	########################################################################
101
102	while (($# > 0))
103	do
104	case $1 in
105	"-h") cat <<fin
106	Usage :
107	makelmdz [options] -arch nom_arch exec
108	[-h] : brief help
109	[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim)
110	[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
111	[-prod / -dev / -debug] : compilation mode production (default) / developement / debug
112	[-c false/MPI1/MPI2] : coupling with ocean model : MPI1/MPI2/false (default: false)
113	[-v false/orchidee2.0/orchidee1.9/true] : version of the vegetation model to include (default: false)
114	false : no vegetation model
115	orchidee2.1 : compile using ORCHIDEE 2.1 (or more recent version)
116	orchidee2.0 : compile using ORCHIDEE 2.0 (or more recent version)
117	orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
118	true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
119	[-chimie INCA/false] : with INCA chemistry model or without (default: false)
120	[-cosp true/false] : compile with/without cosp package (default: false)
121	[-cosp2 true/false] : compile with/without cosp2 package (default: false)
122	[-cospv2 true/false] : compile with/without cospv2 package (default: false)
123	[-inlandsis true/false] : compile with/without inlandsis package (default: false)
124	[-rrtm true/false] : compile with/without rrtm package (default: false)
125	[-rad old/rrtm/ecrad] : compile with old/rrtm/ecrad radiatif code (default: old)
126	[-dust true/false] : compile with/without the dust package from Boucher et al. (default: false)
127	[-strataer true/false] : compile with/without the strat aer package from Boucher et al. (default: false)
128	[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
129	[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
130	[-io ioipsl/mix/xios] : Input/Output library (default: ioipsl)
131	[-include INCLUDES] : extra include path to add
132	[-cpp CPP_KEY] : additional preprocessing definitions
133	[-adjnt] : adjoint model, not operational ...
134	[-mem] : reduced memory dynamics (obsolete flag; always on in parallel mode)
135	[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
136	[-full] : Full (re)compilation (from scratch)
137	[-link LINKS] : additional links with other libraries
138	[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
139	[-ext_src path] : path to an additional set of routines to compile with the model
140	[-arch_path path] : path to architecture files (default: $arch_default_path)
141	-arch nom_arch : target architecture
142	exec : executable to build
143	fin
144	exit;;
145	"-d")
146	dim=$2 ; shift ; shift ;;
147
148	"-p")
149	physique="$2" ; shift ; shift ;;
150
151	"-g")
152	grille="$2" ; shift ; shift ;;
153
154	"-c")
155	couple="$2" ; shift ; shift ;;
156
157	"-prod")
158	compil_mod="prod" ; shift ;;
159
160	"-dev")
161	compil_mod="dev" ; shift ;;
162
163	"-debug")
164	compil_mod="debug" ; shift ;;
165
166	"-io")
167	io="$2" ; shift ; shift ;;
168
169	"-v")
170	veget="$2" ; shift ; shift ;;
171
172	"-chimie")
173	chimie="$2" ; shift ; shift ;;
174
175	"-parallel")
176	parallel="$2" ; shift ; shift ;;
177
178	"-include")
179	INCLUDE="$INCLUDE -I$2" ; shift ; shift ;;
180
181	"-cpp")
182	CPP_KEY="$CPP_KEY $2" ; shift ; shift ;;
183
184	"-cosp")
185	cosp="$2" ; shift ; shift ;;
186
187	"-cosp2")
188	cosp2="$2" ; shift ; shift ;;
189
190	"-cosp2")
191	cospv2="$2" ; shift ; shift ;;
192
193	"-inlandsis")
194	inlandsis="$2" ; shift ; shift ;;
195
196	"-rrtm")
197	rrtm="$2" ; if [ "$2" = "false" ] ; then rad="old" ; else rad="rrtm" ; fi ; shift ; shift ;;
198
199	"-rad")
200	rad="$2" ; shift ; shift ;;
201
202	"-dust")
203	dust="$2" ; shift ; shift ;;
204
205	"-strataer")
206	strataer="$2" ; shift ; shift ;;
207
208	"-mem")
209	echo "option -mem is obsolete (now always on in parallel)"
210	paramem="mem" ; shift ;;
211
212	"-filtre")
213	filtre=$2 ; shift ; shift ;;
214
215	"-full")
216	full="full" ; shift ;;
217
218	"-link")
219	LIB="$LIB $2" ; shift ; shift ;;
220
221	"-fcm_path")
222	fcm_path=$2 ; shift ; shift ;;
223
224	"-ext_src")
225	EXT_SRC=$2 ; src_dirs="$src_dirs $EXT_SRC" ; shift ; shift ;;
226
227	"-arch")
228	arch=$2 ; arch_defined="TRUE" ; shift ; shift ;;
229
230	"-arch_path")
231	arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;;
232
233	*)
234	code="$1" ; shift ;;
235	esac
236	done
237
238	###############################################################
239	# lecture des chemins propres \`a l'architecture de la machine #
240	###############################################################
241	rm -f .void_file
242	echo > .void_file
243	rm -rf .void_dir
244	mkdir .void_dir
245
246	if [[ "$arch_defined" == "TRUE" ]]
247	then
248	rm -f arch.path
249	rm -f arch.fcm
250	rm -f arch.env
251
252	if test -f $arch_path/arch-${arch}.path
253	then
254	ln -s $arch_path/arch-${arch}.path arch.path
255	elif test -f $arch_default_path/arch-${arch}.path
256	then
257	ln -s $arch_default_path/arch-${arch}.path arch.path
258	fi
259
260	if test -f $arch_path/arch-${arch}.fcm
261	then
262	ln -s $arch_path/arch-${arch}.fcm arch.fcm
263	elif test -f $arch_default_path/arch-${arch}.fcm
264	then
265	ln -s $arch_default_path/arch-${arch}.fcm arch.fcm
266	fi
267
268	if test -f $arch_path/arch-${arch}.env
269	then
270	ln -s $arch_path/arch-${arch}.env arch.env
271	elif test -f $arch_default_path/arch-${arch}.env
272	then
273	ln -s $arch_default_path/arch-${arch}.env arch.env
274	else
275	ln -s .void_file arch.env
276	fi
277	# source architecture PATH and ENV files
278	source arch.env
279	source arch.path
280	else
281	echo "You must define a target architecture"
282	exit 1
283	fi
284
285	########################################################################
286	# Definition des clefs CPP, des chemins des includes et modules
287	# et des libraries
288	########################################################################
289
290	# basic compile flags from arch.fcm file
291	archfileline=$( grep -i '^%BASE_FFLAGS' arch.fcm )
292	COMPIL_FFLAGS=$( echo ${archfileline##%BASE_FFLAGS} )
293
294	# other compile flags, depending on compilation mode
295	if [[ "$compil_mod" == "prod" ]]
296	then
297	## read COMPIL_FFLAGS from arch.fcm file
298	archfileline=$( grep -i '^%PROD_FFLAGS' arch.fcm )
299	archfileopt=$( echo ${archfileline##%PROD_FFLAGS} )
300	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
301	elif [[ "$compil_mod" == "dev" ]]
302	then
303	## read %DEV_FFLAGS from arch.fcm file
304	archfileline=$( grep -i '^%DEV_FFLAGS' arch.fcm )
305	archfileopt=$( echo ${archfileline##%DEV_FFLAGS} )
306	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
307	elif [[ "$compil_mod" == "debug" ]]
308	then
309	## read %DEBUG_FFLAGS from arch.fcm file
310	archfileline=$( grep -i '^%DEBUG_FFLAGS' arch.fcm )
311	archfileopt=$( echo ${archfileline##%DEBUG_FFLAGS} )
312	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
313	fi
314
315	# add CPP_KEY defined in arch.fcm file
316	archfileline=$( grep -i '^%FPP_DEF' arch.fcm )
317	archfileopt=$( echo ${archfileline##%FPP_DEF} )
318	CPP_KEY="$CPP_KEY ${archfileopt}"
319
320	# get compiler name from arch.fcm file
321	archfileline=$( grep -i '^%COMPILER' arch.fcm )
322	fcompiler=$( echo ${archfileline##%COMPILER} )
323
324	# get linker name from arch.fcm file
325	archfileline=$( grep -i '^%LINK' arch.fcm )
326	linker=$( echo ${archfileline##%LINK} )
327
328	# get ar command from arch.fcm file
329	archfileline=$( grep -i '^%AR ' arch.fcm )
330	arcommand=$( echo ${archfileline##%AR} )
331
332	# get ar command options from arch.fcm file
333	archfileline=$( grep -i '^%ARFLAGS' arch.fcm )
334	arflags=$( echo ${archfileline##%ARFLAGS} )
335
336	# get make utility from arch.fcm file
337	archfileline=$( grep -i '^%MAKE' arch.fcm )
338	makecommand=$( echo ${archfileline##%MAKE} )
339
340	# get basic libraries to link with arch.fcm file
341	archfileline=$( grep -i '^%BASE_LD' arch.fcm )
342	archfileopt=$( echo ${archfileline##%BASE_LD} )
343	LIB="$LIB ${archfileopt}"
344
345	# add Include files defined in arch.fcm file for pre-processing
346	archfileline=$( grep -i '^%FPP_FLAGS' arch.fcm )
347	for inc in $archfileline ; do INCLUDE="$INCLUDE `echo $inc \| grep '\-I'`" ; done
348
349	phys_root=$physique
350	if [[ "${physique:0:3}" == "lmd" ]] ; then phys_root=lmd ; fi
351	if [[ "${physique:0:4}" == "mars" ]] ; then phys_root=mars ; fi
352	if [[ "${physique:0:3}" == "std" ]] ; then phys_root=std ; fi
353	if [[ "${physique:0:5}" == "venus" ]] ; then phys_root=venus ; fi
354	if [[ "${physique:0:5}" == "titan" ]] ; then phys_root=titan ; fi
355	if [[ "${physique:0:3}" == "dev" ]] ; then phys_root=dev ; fi
356
357	if [[ "$physique" != "nophys" ]]
358	then
359	#We'll use some physics
360	src_dirs="$src_dirs phy_common phy$physique"
361	LIBPHY='$(LIBO)/libphy'"$physique"'.a'
362	LIBPHY_COMMON='$(LIBO)/libphy_common.a'
363	lib_phy='-lphy'"$physique"' -lphy_common'
364	CPP_KEY="$CPP_KEY CPP_PHYS"
365	if [[ $phys_root == "lmd" ]]
366	then
367	#For lmd physics, default planet type is Earth
368	CPP_KEY="$CPP_KEY CPP_EARTH"
369	fi
370	fi
371
372	if [[ "$chimie" == "INCA" ]]
373	then
374	CPP_KEY="$CPP_KEY INCA"
375	INCLUDE="$INCLUDE -I${INCA_INCDIR}"
376	LIB="$LIB -L${INCA_LIBDIR} -lchimie"
377	libchimie=" -L${INCA_LIBDIR} -lchimie"
378	fi
379
380	if [[ "$couple" != "false" ]]
381	then
382	CPP_KEY="$CPP_KEY CPP_COUPLE"
383	INCLUDE="$INCLUDE -I${OASIS_INCDIR}"
384	LIB="$LIB -L${OASIS_LIBDIR} -lpsmile.${couple} -lmpp_io"
385	fi
386
387	if [[ "$parallel" == "none" ]]
388	then
389	FLAG_PARA=''
390	else
391	FLAG_PARA="$paramem"
392	if [[ $paramem == par ]]
393	then
394	echo "The version of the dynamics in dyn3dpar is no longer updated."
395	echo "You should use option \"-mem\"."
396	exit 1
397	fi
398	fi
399
400	if [[ "$parallel" == "mpi" ]]
401	then
402	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI"
403	# MPI additional compilation options
404	archfileline=$( grep -i '^%MPI_FFLAGS' arch.fcm )
405	PARA_FFLAGS=$( echo ${archfileline##%MPI_FFLAGS} )
406	# MPI additional links
407	archfileline=$( grep -i '^%MPI_LD' arch.fcm )
408	PARA_LD=$( echo ${archfileline##%MPI_LD} )
409	elif [[ "$parallel" == "omp" ]]
410	then
411	CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP"
412	# OMP additional compilation options
413	archfileline=$( grep -i '^%OMP_FFLAGS' arch.fcm )
414	PARA_FFLAGS=$( echo ${archfileline##%OMP_FFLAGS} )
415	# OMP additional links
416	archfileline=$( grep -i '^%OMP_LD' arch.fcm )
417	PARA_LD=$( echo ${archfileline##%OMP_LD} )
418	elif [[ "$parallel" == "mpi_omp" ]]
419	then
420	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP"
421	# MPI additional compilation options
422	archfileline=$( grep -i '^%MPI_FFLAGS' arch.fcm )
423	PARA_FFLAGS=$( echo ${archfileline##%MPI_FFLAGS} )
424	# OMP additional compilation options
425	archfileline=$( grep -i '^%OMP_FFLAGS' arch.fcm )
426	PARA_FFLAGS="${PARA_FFLAGS} "$( echo $archfileopt ${archfileline##%OMP_FFLAGS} )
427	# MPI additional links
428	archfileline=$( grep -i '^%MPI_LD' arch.fcm )
429	PARA_LD=$( echo ${archfileline##%MPI_LD} )
430	# OMP additional links
431	archfileline=$( grep -i '^%OMP_LD' arch.fcm )
432	PARA_LD="${PARA_LD} "$( echo $archfileopt ${archfileline##%OMP_LD} )
433	fi
434
435	if [[ ( "$parallel" == "omp" \|\| "$parallel" == "mpi_omp" ) \
436	&& "$compil_mod" == "debug" ]]
437	then
438	echo "Usually, parallelization with OpenMP requires some optimization."
439	echo "We suggest switching to \"-dev\"."
440	fi
441
442
443	#==============================================================================
444	if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" -o "$veget" = "orchidee2.1" ]
445	then
446
447	INCLUDE="${INCLUDE} -I${ORCH_INCDIR}"
448	CPP_KEY="$CPP_KEY CPP_VEGET"
449	# temporary, for Orchidee versions 1.9.* (before openmp activation)
450	if [[ "$veget" == "orchidee1.9" ]] ; then
451	CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP"
452	fi
453	if [[ "$veget" == "orchidee2.0" ]] ; then
454	orch_libs="sechiba parameters stomate parallel orglob orchidee"
455	CPP_KEY="$CPP_KEY ORCHIDEE_NOUNSTRUCT"
456	elif [[ "$veget" == "orchidee2.1" ]] ; then
457	orch_libs="sechiba parameters stomate parallel orglob orchidee"
458	else
459	orch_libs="sechiba parameters stomate parallel orglob"
460	fi
461	LIB="${LIB} -L${ORCH_LIBDIR}"
462	for lib in ${orch_libs} ; do
463	if [ -f ${ORCH_LIBDIR}/lib${LIBPREFIX}$lib.a ] ; then
464	LIB="${LIB} -l${LIBPREFIX}$lib "
465	fi
466	done
467	elif [[ "$veget" != "false" ]] ; then
468	echo "Option -v $veget does not exist"
469	echo "Use ./makelmdz -h for more information"
470	exit
471	fi
472
473	#===============================================================================
474	if [[ $io == ioipsl ]]
475	then
476	CPP_KEY="$CPP_KEY CPP_IOIPSL"
477	INCLUDE="$INCLUDE -I${IOIPSL_INCDIR}"
478	LIB="$LIB -L${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl"
479	elif [[ $io == mix ]]
480	then
481	# For now, xios implies also using ioipsl
482	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS"
483	INCLUDE="$INCLUDE -I${IOIPSL_INCDIR} -I${XIOS_INCDIR}"
484	LIB="$LIB -L${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl -L${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios -l${LIBPREFIX}stdc++"
485	elif [[ $io == xios ]]
486	then
487	# For now, xios implies also using ioipsl
488	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS CPP_IOIPSL_NO_OUTPUT"
489	INCLUDE="$INCLUDE -I${IOIPSL_INCDIR} -I${XIOS_INCDIR}"
490	LIB="$LIB -L${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl -L${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios -l${LIBPREFIX}stdc++"
491	fi
492
493	if [[ "$cosp" == "true" ]]
494	then
495	CPP_KEY="$CPP_KEY CPP_COSP"
496	# COSP_PATH="$LIBFGCM/phylmd/cosp"
497	src_dirs="$src_dirs phy${physique}/cosp"
498	# LIB="${LIB} -l${LIBPREFIX}cosp"
499	# opt_dep="$opt_dep cosp"
500	# lcosp="-l${LIBPREFIX}cosp"
501	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cosp'
502	fi
503
504	if [[ "$cosp2" == "true" ]]
505	then
506	CPP_KEY="$CPP_KEY CPP_COSP2"
507	src_dirs="$src_dirs phy${physique}/cosp2"
508	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cosp2'
509	fi
510
511	if [[ "$cospv2" == "true" ]]
512	then
513	CPP_KEY="$CPP_KEY CPP_COSPV2"
514	src_dirs="$src_dirs phy${physique}/cospv2"
515	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cospv2'
516	fi
517
518
519	if [[ "$inlandsis" == "true" ]]
520	then
521	CPP_KEY="$CPP_KEY CPP_INLANDSIS"
522	src_dirs="$src_dirs phy${physique}/inlandsis"
523	fi
524
525
526	if [[ "$rad" == "rrtm" ]]
527	then
528	CPP_KEY="$CPP_KEY CPP_RRTM"
529	src_dirs="$src_dirs phy${physique}/rrtm"
530	fi
531	if [[ "$rad" == "ecrad" ]]
532	then
533	CPP_KEY="$CPP_KEY CPP_ECRAD"
534	src_dirs="$src_dirs phy${physique}/ecrad"
535	fi
536
537	if [[ "$dust" == "true" ]]
538	then
539	CPP_KEY="$CPP_KEY CPP_Dust"
540	src_dirs="$src_dirs phy${physique}/Dust"
541	fi
542
543	if [[ "$strataer" == "true" ]]
544	then
545	CPP_KEY="$CPP_KEY CPP_StratAer"
546	src_dirs="$src_dirs phy${physique}/StratAer"
547	fi
548
549	#add new ocean skin modelisation to source dir by default
550
551	src_dirs="$src_dirs phy${physique}/Ocean_skin"
552
553
554	INCLUDE="$INCLUDE ${NETCDF_INCDIR}"
555	LIB="$LIB ${NETCDF_LIBDIR}"
556
557	########################################################################
558	# calcul du nombre de dimensions
559	########################################################################
560
561
562	dim_full=$dim
563	dim=`echo $dim \| sed -e 's/[^0-9]/ /g'`
564	set $dim
565	dimc=$#
566	echo calcul de la dimension
567	echo dim $dim
568	echo dimc $dimc
569
570	########################################################################
571	# Gestion des dimensions du modele.
572	# on cree ou remplace le fichier des dimensions
573	########################################################################
574
575	cd $LIBFGCM/grid
576	if [[ -f dimensions.h ]]
577	then
578	echo 'ATTENTION: vous etes sans doute en train de compiler le modele par ailleurs'
579	echo "Attendez que la premiere compilation soit terminee pour relancer la suivante."
580	echo "Si vous etes sur que vous ne compilez pas le modele par ailleurs,"
581	echo vous pouvez continuer en repondant oui.
582	echo "Voulez-vous vraiment continuer?"
583	echo ""
584	echo "WARNING: you are probably already compiling the model somewhere else."
585	echo "Wait until the first compilation is finished before launching this one."
586	echo "If you are sure that you are not compiling elsewhere, just answer "
587	echo "yes (or 'oui') to the question below to proceed."
588	echo "Do you wish to continue?"
589	read reponse
590	if [[ $reponse == "oui" \|\| $reponse == "yes" ]]
591	then
592	\rm -f $LIBFGCM/grid/dimensions.h
593	else
594	exit
595	fi
596	fi
597
598	cd $LIBFGCM/grid/dimension
599	./makdim $dim
600	if (($? != 0))
601	then
602	exit 1
603	fi
604
605	cat $LIBFGCM/grid/dimensions.h
606	cd $LMDGCM
607
608	########################################################################
609	# Differentes dynamiques (3d, 2d, 1d)
610	########################################################################
611
612	if (( $dimc == 3 )) ; then
613	src_dirs="$src_dirs $filtre dyn3d_common dyn3d${FLAG_PARA}"
614	if [[ $physique != "nophys" ]] ; then
615	src_dirs="$src_dirs dynphy_lonlat dynphy_lonlat/phy${phys_root}"
616	libdyn_phy="-ldynphy_lonlat"
617	LIBDYN_PHYS='$(LIBO)/libdynphy_lonlat.a'
618	INCLUDE="$INCLUDE "'-I$(LIBF)/dynphy_lonlat'
619	INCLUDE="$INCLUDE "'-I$(LIBF)/dynphy_lonlat/'"phy${phys_root}"
620	fi
621	cd $LIBFGCM/grid
622	\rm fxyprim.h
623	cp -p fxy_${grille}.h fxyprim.h
624	filtre="FILTRE=$filtre"
625	INCLUDE="$INCLUDE "'-I$(LIBF)/dyn3d${FLAG_PARA} -I$(LIBF)/dyn3d_common '
626	elif (( $dimc == 2 )) ; then
627	src_dirs="$src_dirs dyn2d"
628	filtre="FILTRE= L_FILTRE= "
629	INCLUDE="$INCLUDE "'-I$(LIBF)/dyn2d'
630	elif (( $dimc == 1 )) ; then
631	#src_dirs="$src_dirs dyn3d dyn3d_common filtrez"
632	src_dirs="$src_dirs phy${physique}/dyn1d"
633	CPP_KEY="$CPP_KEY CPP_1D"
634	filtre="L_DYN= DYN= FILTRE= L_FILTRE= "
635	#INCLUDE="$INCLUDE "'-I$(LIBF)/dyn3d -I$(LIBF)/dyn3d_common ' # Pas tres propre
636	INCLUDE="$INCLUDE "' -I$(LIBF)/phy'"$physique"'/dyn1d'
637	else
638	echo Dimension dimc=$dimc pas prevu ; exit
639	fi
640
641	cd $LMDGCM
642
643	########################################################################
644	# library directory name:
645	########################################################################
646
647	nomlib=`echo ${arch}_${physique}_${dim_full}_${grille}_${compil_mod}_parall${parallel}_${CPP_KEY}_${FLAG_PARA} \| sed -e 's/ //g' -e 's/-//g ' \| sed -e 's/CPP_//g'`
648	echo "Path to library: "$nomlib
649
650	########################################################################
651	# Cleanup for a full recompilation, if requested
652	########################################################################
653
654	if [[ $full == "full" ]]
655	then
656	# remove makefile and librairies
657	echo "-full option: recompiling from scratch"
658	\rm -f makefile
659	\rm -rf "${LIBOGCM}/${nomlib}"
660	fi
661
662	########################################################################
663	# Avant de lancer le make, on recree le makefile si necessaire
664	########################################################################
665	########################################################################
666	# c'est a dire dans 3 cas:
667	# 1. si la liste des fichiers .F et .h a ete modifiee depuis la
668	# derniere creation du makefile
669	# 2. si le fichier contenant cette liste "liste_des_sources"
670	# n'existe pas.
671	# 3. Si le makefile n'existe pas.
672	########################################################################
673	cd $LMDGCM
674
675
676	if [[ -r .makelmdz ]]
677	then
678	old_lmdz_configuration=$(cat .makelmdz )
679	else
680	old_lmdz_configuration=""
681	fi
682	lmdz_configuration="$src_dirs"
683	if [[ "$lmdz_configuration" != "$old_lmdz_configuration" ]]
684	then
685	configuration_change="true"
686	else
687	configuration_change="false"
688	fi
689
690	mkdir -p make_dir
691	suf_make=`echo $src_dirs \| sed -e 's/\//_/g' -e 's/ /_/g'`
692	echo suf_make $suf_make
693
694	\rm tmp77 tmp90
695	for dir in $src_dirs ; do
696	find libf/$dir -name '*.[Fh]' -print \| sort >> tmp77
697	find libf/$dir -name '*.F90' -print \| sort >> tmp90
698	done
699
700	liste77=make_dir/liste_des_sources_f77_$suf_make
701	liste90=make_dir/liste_des_sources_f90_$suf_make
702	makefile=make_dir/makefile_$suf_make
703
704	if [[ $configuration_change == "true" \|\| ! ( -r $makefile ) \|\| ! ( -r $liste90 ) \|\| ! ( -r $liste77 ) \|\| ` diff tmp77 $liste77 \| wc -w ` -ne 0 \|\| ` diff tmp90 $liste90 \| wc -w ` -ne 0 ]]
705	then
706	echo "les fichiers suivants ont ete crees ou detruits"
707	echo "ou les fichiers suivants sont passes ou ne sont plus en Fortran 90"
708	diff $liste77 tmp77
709	diff $liste90 tmp90
710	\cp -f tmp77 $liste77
711	\cp -f tmp90 $liste90
712	echo "Recreating the makefile"
713	echo "src_dirs: $src_dirs"
714	./create_make_gcm $src_dirs > tmp
715	\mv -f tmp $makefile
716	echo "New makefile created"
717	fi
718
719	ln -sf $makefile makefile
720
721	#Create a .makelmdz file containing main compilation option for later comparisons
722	echo "$lmdz_configuration" > .makelmdz
723
724	#################################################################
725	# Preparation de l'execution de la comande make
726	#################################################################
727
728	source_code=${code}.F
729	dirmain=dyn${dimc}d${FLAG_PARA}
730	if [[ -r $LMDGCM/libf/dyn${dimc}d${FLAG_PARA}/${code}.F90 ]]
731	then
732	source_code=${code}.F90
733	elif [[ -r $LMDGCM/libf/phy$physique/${code}.F90 ]] ; then
734	dirmain=phy$physique
735	source_code=${code}.F90
736	elif [[ -r $LMDGCM/libf/dynphy_lonlat/phy$phys_root/${code}.F90 ]] ; then
737	dirmain="dynphy_lonlat/phy${phys_root}"
738	source_code=${code}.F90
739	elif [[ -r $LMDGCM/libf/phy$physique/dyn1d/${code}.F90 ]] ; then
740	dirmain=phy$physique/dyn1d
741	source_code=${code}.F90
742	fi
743
744	if [[ ! -d "${LIBOGCM}/${nomlib}" ]]
745	then
746	mkdir ${LIBOGCM}/${nomlib}
747	# check we indeed managed to create the directory
748	if [[ ! $? ]]
749	then
750	echo "Error: could not create directory ${LIBOGCM}/${nomlib}"
751	exit
752	fi
753	fi
754
755	# where module files are created
756	mod_loc_dir=$localdir
757
758	if [[ "$physique" != "nophys" ]]
759	then
760	INCLUDE="$INCLUDE"' -I$(LIBF)/phy'"$physique"
761	fi
762	INCLUDE="$INCLUDE"' -I'${LIBOGCM}/${nomlib}
763
764	# ranlib utility (check it exists or else default to ls)
765	if [[ `which ranlib > /dev/null 2>&1 ; echo $?` -eq 0 ]]
766	then
767	ranlib="ranlib"
768	else
769	ranlib="ls"
770	fi
771
772	# add CPP keys to COMPIL_FLAGS
773	# (but first add -D before all CPP_KEY items)
774	cpp_definitions=`echo $CPP_KEY \| sed -e 's/[A-Za-z_=0-9]*/-D&/g'`
775	# (but add a -WF,-D before all CPP_KEY items) => for xlf on Vargas
776	if [[ "${fcompiler:0:3}" == "xlf" ]]
777	then
778	cpp_definitions=`echo $CPP_KEY \| sed -e 's/[A-Za-z_=0-9]*/-WF,-D&/g'`
779	fi
780	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${cpp_definitions}"
781
782	#################################################################
783	# Execution du make
784	#################################################################
785	echo $makecommand RANLIB=$ranlib -f $LMDGCM/makefile \
786	OPTION_DEP="$opt_dep" OPTION_LINK="$LIB ${PARA_LD}" \
787	OPTIM90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
788	OPTIMTRU90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
789	OPTIM="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
790	INCLUDE="$INCLUDE" \
791	$filtre \
792	LIBO=${LIBOGCM}/${nomlib} \
793	"PHYS=$physique" \
794	LIBPHY=${LIBPHY} \
795	LIBPHY_COMMON=${LIBPHY_COMMON} \
796	LIBDYN_PHYS=${LIBDYN_PHYS} \
797	DIM=$dimc \
798	FLAG_PARA=$FLAG_PARA \
799	L_PHY="$lib_phy" \
800	L_DYN_PHY="$libdyn_phy" \
801	L_ADJNT=$adjnt \
802	L_COSP="$lcosp" \
803	L_COSP2="$lcosp2" \
804	L_COSPV2="$lcospv2" \
805	L_CHIMIE="$libchimie" \
806	LOCAL_DIR="$localdir" \
807	F77="$fcompiler" \
808	F90="$fcompiler" \
809	OPLINK="$LIB" \
810	LINK="$linker" \
811	GCM="$LMDGCM" \
812	MOD_LOC_DIR=$mod_loc_dir \
813	MOD_SUFFIX="mod" \
814	AR=$arcommand \
815	ARFLAGS="$arflags" \
816	DIRMAIN=$dirmain \
817	SOURCE=$source_code \
818	PROG=$code
819
820	$makecommand RANLIB=$ranlib -f $LMDGCM/makefile \
821	OPTION_DEP="$opt_dep" OPTION_LINK="$LIB ${PARA_LD}" \
822	OPTIM90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
823	OPTIMTRU90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
824	OPTIM="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
825	INCLUDE="$INCLUDE" \
826	$filtre \
827	LIBO=${LIBOGCM}/${nomlib} \
828	"PHYS=$physique" \
829	LIBPHY=${LIBPHY} \
830	LIBPHY_COMMON=${LIBPHY_COMMON} \
831	LIBDYN_PHYS=${LIBDYN_PHYS} \
832	DIM=$dimc \
833	FLAG_PARA=$FLAG_PARA \
834	L_PHY="$lib_phy" \
835	L_DYN_PHY="$libdyn_phy" \
836	L_ADJNT=$adjnt \
837	L_COSP="$lcosp" \
838	L_COSP2="$lcosp2" \
839	L_COSPV2="$lcospv2" \
840	L_CHIMIE="$libchimie" \
841	LOCAL_DIR="$localdir" \
842	F77="$fcompiler" \
843	F90="$fcompiler" \
844	OPLINK="$LIB" \
845	LINK="$linker" \
846	GCM="$LMDGCM" \
847	MOD_LOC_DIR=$mod_loc_dir \
848	MOD_SUFFIX="mod" \
849	AR=$arcommand \
850	ARFLAGS="$arflags" \
851	DIRMAIN=$dirmain \
852	SOURCE=$source_code \
853	PROG=$code
854
855
856	if [[ -r $LIBFGCM/grid/dimensions.h ]]
857	then
858	# Cleanup: remove dimension.h file
859	\rm -f $LIBFGCM/grid/dimensions.h
860	fi

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