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makelmdz @ 5437

Last change on this file since 5437 was 4669, checked in by Laurent Fairhead, 16 months ago
Merged with trunk revision 4586 corresponding to june 2023 testing
Property copyright set to Name of program: LMDZ Creation date: 1984 Version: LMDZ5 License: CeCILL version 2 Holder: Laboratoire de m\'et\'eorologie dynamique, CNRS, UMR 8539 See the license file in the root directory Property svn:executable set to ``*
File size: 25.6 KB

Rev	Line
[1463]	1	#!/bin/bash
	2	#
[1695]	3	# $Id$
[1463]	4	#
	5	#
	6	########################################################################
	7	# for debug, uncomment line below
	8	#set -xv
	9	########################################################################
	10	# options par defaut pour la commande make
	11	########################################################################
	12	dim="96x72x19"
	13	physique=lmd
	14	code=gcm
	15	filtre=filtrez
	16	grille=reg
	17	couple=false
	18	veget=false
[4669]	19	inlandsis=false
	20	rrtm=false
	21	rad="oldrad"
	22	dust=false
	23	strataer=false
[1463]	24	chimie=false
	25	parallel=none
[3997]	26	paramem="mem"
[1463]	27	compil_mod=prod
	28	io=ioipsl
	29	LIBPREFIX=""
	30	fcm_path=none
	31	cosp=false
[3359]	32	cosp2=false
[3491]	33	cospv2=false
[4669]	34
[2112]	35	full=""
[1463]	36
[2743]	37	arch_defined="FALSE"
	38	arch_path="arch"
	39	arch_default_path="arch"
	40
[1463]	41	# guess a default 'arch'
[1690]	42	arch="local" # start with assuming we're on a local machine with local arch file
[2746]	43	arch_defined="TRUE" # and thus also set arch_defined to true
[1463]	44	## try to recognise machine and infer arch from it
	45	machine=`hostname`
[3574]	46	if [[ "${machine:0:4}" == "jean" ]]
[1463]	47	then
[3574]	48	arch="X64_JEANZAY"
[1463]	49	fi
	50	if [[ "${machine:0:7}" == "platine" ]]
	51	then
	52	arch="IA64_PLATINE"
	53	fi
	54	if [[ "${machine:0:6}" == "titane" ]]
	55	then
	56	arch="X64_TITANE"
	57	fi
	58	if [[ "${machine:0:8}" == "mercure1" ]]
	59	then
	60	arch="SX8_MERCURE"
	61	fi
	62	if [[ "${machine:0:8}" == "mercure2" ]]
	63	then
	64	arch="SX9_MERCURE"
	65	fi
	66
	67	LMDGCM=`pwd -P`
	68	LIBFGCM=$LMDGCM/libf
	69	LIBOGCM=$LMDGCM/libo
	70	if [[ ! -d $LIBOGCM ]]
	71	then
	72	# create the directory
	73	mkdir $LIBOGCM
	74	if [[ ! $? ]]
	75	then
	76	echo "Failed to create directory $LIBOGCM"
	77	exit
	78	fi
	79	fi
[3232]	80	#COSP_PATH=$LMDGCM/.void_dir
[1463]	81
	82
	83
	84	localdir=`pwd -P`
	85	########################################################################
	86	# Quelques initialisations de variables du shell.
	87	########################################################################
	88
[3835]	89	CPP_KEY="IN_LMDZ"
[2239]	90	INCLUDE='-I$(LIBF)/grid -I$(LIBF)/misc -I$(LIBF)/filtrez -I. '
[1463]	91	LIB=""
	92	adjnt=""
	93	##COMPIL_FFLAGS="%PROD_FFLAGS"
	94	PARA_FFLAGS=""
	95	PARA_LD=""
	96	EXT_SRC=""
[2238]	97	#src_dirs: directories containing source files
[2239]	98	src_dirs="grid misc"
[1463]	99	########################################################################
	100	# lecture des options
	101	########################################################################
	102
	103	while (($# > 0))
	104	do
	105	case $1 in
	106	"-h") cat <<fin
	107	Usage :
[1772]	108	makelmdz [options] -arch nom_arch exec
	109	[-h] : brief help
	110	[-d [[IMx]JMx]LM] : IM, JM, LM are the dimensions in x, y, z (default: $dim)
	111	[-p PHYS] : set of physical parametrizations (in libf/phyPHYS), (default: lmd)
	112	[-prod / -dev / -debug] : compilation mode production (default) / developement / debug
[4669]	113	[-c false/MPI1/OMCT] : coupling with ocean model : MPI1/OMCT/false (default: false)
[4283]	114	[-v false/orchideetrunk/orchidee2.1/orchidee2.0/orchidee1.9] : version of the vegetation model to include (default: false)
[1772]	115	false : no vegetation model
[4283]	116	orchideetrunk : compile using ORCHIDEE trunk from revision 7757 or higher
	117	orchidee2.1 : compile using ORCHIDEE 2.1 until 4.1 included or until revision 7757 on the trunk
[4669]	118	orchidee2.0 : compile using ORCHIDEE 2.0
[1772]	119	orchidee1.9 : compile using ORCHIDEE up to the version including OpenMP in ORCHIDEE : tag 1.9-1.9.5(version AR5)-1.9.6
	120	true : (obsolete; for backward compatibility) use ORCHIDEE tag 1.9-1.9.6
	121	[-chimie INCA/false] : with INCA chemistry model or without (default: false)
[2238]	122	[-cosp true/false] : compile with/without cosp package (default: false)
[3359]	123	[-cosp2 true/false] : compile with/without cosp2 package (default: false)
[3491]	124	[-cospv2 true/false] : compile with/without cospv2 package (default: false)
[3793]	125	[-inlandsis true/false] : compile with/without inlandsis package (default: false)
[2238]	126	[-rrtm true/false] : compile with/without rrtm package (default: false)
[4408]	127	[-rad oldrad/rrtm/ecrad] : compile with oldrad/rrtm/ecrad radiatif code (default: oldrad)
[4669]	128	[-dust true/false] : compile with/without the dust package by Boucher and co (default: false)
	129	[-strataer true/false] : compile with/without the strat aer package by Boucher and co (default: false)
[1772]	130	[-parallel none/mpi/omp/mpi_omp] : parallelism (default: none) : mpi, openmp or mixted mpi_openmp
	131	[-g GRI] : grid configuration in dyn3d/GRI_xy.h (default: reg, inclues a zoom)
[2097]	132	[-io ioipsl/mix/xios] : Input/Output library (default: ioipsl)
[1772]	133	[-include INCLUDES] : extra include path to add
	134	[-cpp CPP_KEY] : additional preprocessing definitions
	135	[-adjnt] : adjoint model, not operational ...
[3997]	136	[-mem] : reduced memory dynamics (obsolete flag; always on in parallel mode)
[1772]	137	[-filtre NOMFILTRE] : use filtre from libf/NOMFILTRE (default: filtrez)
	138	[-link LINKS] : additional links with other libraries
[4669]	139	[-full] : full recompiling
[1772]	140	[-fcm_path path] : path to the fcm tool (default: tools/fcm/bin)
	141	[-ext_src path] : path to an additional set of routines to compile with the model
[2743]	142	[-arch_path path] : path to architecture files (default: $arch_default_path)
[1772]	143	-arch nom_arch : target architecture
	144	exec : executable to build
[1463]	145	fin
	146	exit;;
	147	"-d")
	148	dim=$2 ; shift ; shift ;;
	149
	150	"-p")
	151	physique="$2" ; shift ; shift ;;
	152
	153	"-g")
	154	grille="$2" ; shift ; shift ;;
	155
	156	"-c")
	157	couple="$2" ; shift ; shift ;;
	158
	159	"-prod")
	160	compil_mod="prod" ; shift ;;
	161
	162	"-dev")
	163	compil_mod="dev" ; shift ;;
	164
	165	"-debug")
	166	compil_mod="debug" ; shift ;;
	167
	168	"-io")
	169	io="$2" ; shift ; shift ;;
	170
	171	"-v")
	172	veget="$2" ; shift ; shift ;;
	173
[4669]	174	"-inlandsis")
	175	inlandsis="$2" ; shift ; shift ;;
	176
	177	"-rrtm")
	178	rrtm="$2" ; if [ "$2" = "false" ] ; then rad="oldrad" ; else rad="rrtm" ; fi ; shift ; shift ;;
	179
	180	"-rad")
	181	rad="$2" ; shift ; shift ;;
	182
	183	"-dust")
	184	dust="$2" ; shift ; shift ;;
	185
	186	"-strataer")
	187	strataer="$2" ; shift ; shift ;;
	188
[1463]	189	"-chimie")
	190	chimie="$2" ; shift ; shift ;;
	191
	192	"-parallel")
	193	parallel="$2" ; shift ; shift ;;
	194
	195	"-include")
	196	INCLUDE="$INCLUDE -I$2" ; shift ; shift ;;
	197
	198	"-cpp")
	199	CPP_KEY="$CPP_KEY $2" ; shift ; shift ;;
	200
	201	"-cosp")
	202	cosp="$2" ; shift ; shift ;;
[3359]	203
	204	"-cosp2")
	205	cosp2="$2" ; shift ; shift ;;
[3491]	206
[4669]	207	"-cospv2")
[3491]	208	cospv2="$2" ; shift ; shift ;;
[1690]	209
	210	"-mem")
[3997]	211	echo "option -mem is obsolete (now always on in parallel)"
[1690]	212	paramem="mem" ; shift ;;
[1463]	213
	214	"-filtre")
	215	filtre=$2 ; shift ; shift ;;
	216
	217	"-link")
	218	LIB="$LIB $2" ; shift ; shift ;;
	219
	220	"-fcm_path")
	221	fcm_path=$2 ; shift ; shift ;;
	222
	223	"-ext_src")
[2238]	224	EXT_SRC=$2 ; src_dirs="$src_dirs $EXT_SRC" ; shift ; shift ;;
[1463]	225
[4669]	226	"-full")
	227	full="full" ; shift ;;
	228
[1463]	229	"-arch")
[2743]	230	arch=$2 ; arch_defined="TRUE" ; shift ; shift ;;
[1463]	231
[2743]	232	"-arch_path")
	233	arch_path=$2 ; arch_path_defined="TRUE"; shift ; shift ;;
	234
[1463]	235	*)
	236	code="$1" ; shift ;;
	237	esac
	238	done
	239
	240	###############################################################
[2098]	241	# lecture des chemins propres \`a l'architecture de la machine #
[1463]	242	###############################################################
	243	rm -f .void_file
	244	echo > .void_file
	245	rm -rf .void_dir
	246	mkdir .void_dir
[2743]	247
	248	if [[ "$arch_defined" == "TRUE" ]]
[1463]	249	then
[2743]	250	rm -f arch.path
	251	rm -f arch.fcm
	252	rm -f arch.env
	253
	254	if test -f $arch_path/arch-${arch}.path
	255	then
	256	ln -s $arch_path/arch-${arch}.path arch.path
	257	elif test -f $arch_default_path/arch-${arch}.path
	258	then
	259	ln -s $arch_default_path/arch-${arch}.path arch.path
	260	fi
	261
	262	if test -f $arch_path/arch-${arch}.fcm
	263	then
	264	ln -s $arch_path/arch-${arch}.fcm arch.fcm
	265	elif test -f $arch_default_path/arch-${arch}.fcm
	266	then
	267	ln -s $arch_default_path/arch-${arch}.fcm arch.fcm
	268	fi
	269
	270	if test -f $arch_path/arch-${arch}.env
	271	then
	272	ln -s $arch_path/arch-${arch}.env arch.env
	273	elif test -f $arch_default_path/arch-${arch}.env
	274	then
	275	ln -s $arch_default_path/arch-${arch}.env arch.env
	276	else
	277	ln -s .void_file arch.env
	278	fi
	279	# source architecture PATH and ENV files
	280	source arch.env
[1463]	281	source arch.path
	282	else
[2743]	283	echo "You must define a target architecture"
	284	exit 1
[1463]	285	fi
[2743]	286
[1463]	287	########################################################################
	288	# Definition des clefs CPP, des chemins des includes et modules
	289	# et des libraries
	290	########################################################################
	291
	292	# basic compile flags from arch.fcm file
	293	archfileline=$( grep -i '^%BASE_FFLAGS' arch.fcm )
	294	COMPIL_FFLAGS=$( echo ${archfileline##%BASE_FFLAGS} )
	295
	296	# other compile flags, depending on compilation mode
	297	if [[ "$compil_mod" == "prod" ]]
	298	then
	299	## read COMPIL_FFLAGS from arch.fcm file
	300	archfileline=$( grep -i '^%PROD_FFLAGS' arch.fcm )
	301	archfileopt=$( echo ${archfileline##%PROD_FFLAGS} )
	302	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	303	elif [[ "$compil_mod" == "dev" ]]
	304	then
	305	## read %DEV_FFLAGS from arch.fcm file
	306	archfileline=$( grep -i '^%DEV_FFLAGS' arch.fcm )
	307	archfileopt=$( echo ${archfileline##%DEV_FFLAGS} )
	308	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	309	elif [[ "$compil_mod" == "debug" ]]
	310	then
	311	## read %DEBUG_FFLAGS from arch.fcm file
	312	archfileline=$( grep -i '^%DEBUG_FFLAGS' arch.fcm )
	313	archfileopt=$( echo ${archfileline##%DEBUG_FFLAGS} )
	314	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${archfileopt}"
	315	fi
	316
	317	# add CPP_KEY defined in arch.fcm file
	318	archfileline=$( grep -i '^%FPP_DEF' arch.fcm )
	319	archfileopt=$( echo ${archfileline##%FPP_DEF} )
	320	CPP_KEY="$CPP_KEY ${archfileopt}"
	321
	322	# get compiler name from arch.fcm file
	323	archfileline=$( grep -i '^%COMPILER' arch.fcm )
	324	fcompiler=$( echo ${archfileline##%COMPILER} )
	325
	326	# get linker name from arch.fcm file
	327	archfileline=$( grep -i '^%LINK' arch.fcm )
	328	linker=$( echo ${archfileline##%LINK} )
	329
	330	# get ar command from arch.fcm file
[3045]	331	archfileline=$( grep -i '^%AR ' arch.fcm )
[1463]	332	arcommand=$( echo ${archfileline##%AR} )
	333
[3045]	334	# get ar command options from arch.fcm file
	335	archfileline=$( grep -i '^%ARFLAGS' arch.fcm )
[3051]	336	arflags=$( echo ${archfileline##%ARFLAGS} )
[3045]	337
[1463]	338	# get make utility from arch.fcm file
	339	archfileline=$( grep -i '^%MAKE' arch.fcm )
	340	makecommand=$( echo ${archfileline##%MAKE} )
	341
	342	# get basic libraries to link with arch.fcm file
	343	archfileline=$( grep -i '^%BASE_LD' arch.fcm )
	344	archfileopt=$( echo ${archfileline##%BASE_LD} )
	345	LIB="$LIB ${archfileopt}"
	346
[1873]	347	# add Include files defined in arch.fcm file for pre-processing
	348	archfileline=$( grep -i '^%FPP_FLAGS' arch.fcm )
	349	for inc in $archfileline ; do INCLUDE="$INCLUDE `echo $inc \| grep '\-I'`" ; done
	350
[2250]	351	phys_root=$physique
	352	if [[ "${physique:0:3}" == "lmd" ]] ; then phys_root=lmd ; fi
	353	if [[ "${physique:0:4}" == "mars" ]] ; then phys_root=mars ; fi
	354	if [[ "${physique:0:3}" == "std" ]] ; then phys_root=std ; fi
	355	if [[ "${physique:0:5}" == "venus" ]] ; then phys_root=venus ; fi
	356	if [[ "${physique:0:5}" == "titan" ]] ; then phys_root=titan ; fi
	357	if [[ "${physique:0:3}" == "dev" ]] ; then phys_root=dev ; fi
	358
[1463]	359	if [[ "$physique" != "nophys" ]]
	360	then
[1690]	361	#We'll use some physics
[2326]	362	src_dirs="$src_dirs phy_common phy$physique"
[2239]	363	LIBPHY='$(LIBO)/libphy'"$physique"'.a'
[2326]	364	LIBPHY_COMMON='$(LIBO)/libphy_common.a'
	365	lib_phy='-lphy'"$physique"' -lphy_common'
[1690]	366	CPP_KEY="$CPP_KEY CPP_PHYS"
[4669]	367	if [[ "${phys_root}" == "lmd" ]]
	368	then
	369	#For lmd physics, default planet type is Earth
	370	CPP_KEY="$CPP_KEY CPP_EARTH"
[1690]	371	fi
[1463]	372	fi
	373
	374	if [[ "$chimie" == "INCA" ]]
	375	then
	376	CPP_KEY="$CPP_KEY INCA"
[4426]	377	INCLUDE="$INCLUDE ${INCA_INCDIR}"
	378	LIB="$LIB ${INCA_LIBDIR} ${INCA_LIB}"
	379	libchimie=" ${INCA_LIBDIR} ${INCA_LIB}"
[1463]	380	fi
	381
	382	if [[ "$couple" != "false" ]]
	383	then
	384	CPP_KEY="$CPP_KEY CPP_COUPLE"
[4426]	385	INCLUDE="$INCLUDE ${OASIS_INCDIR}"
	386	LIB="$LIB ${OASIS_LIBDIR} ${OASIS_LIB}"
[1463]	387	fi
	388
	389	if [[ "$parallel" == "none" ]]
	390	then
	391	FLAG_PARA=''
	392	else
[1810]	393	FLAG_PARA="$paramem"
[2202]	394	if [[ $paramem == par ]]
	395	then
	396	echo "The version of the dynamics in dyn3dpar is no longer updated."
	397	echo "You should use option \"-mem\"."
	398	exit 1
[2238]	399	fi
[1463]	400	fi
	401
	402	if [[ "$parallel" == "mpi" ]]
	403	then
	404	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI"
	405	# MPI additional compilation options
	406	archfileline=$( grep -i '^%MPI_FFLAGS' arch.fcm )
	407	PARA_FFLAGS=$( echo ${archfileline##%MPI_FFLAGS} )
	408	# MPI additional links
	409	archfileline=$( grep -i '^%MPI_LD' arch.fcm )
	410	PARA_LD=$( echo ${archfileline##%MPI_LD} )
	411	elif [[ "$parallel" == "omp" ]]
	412	then
	413	CPP_KEY="$CPP_KEY CPP_PARA CPP_OMP"
	414	# OMP additional compilation options
	415	archfileline=$( grep -i '^%OMP_FFLAGS' arch.fcm )
	416	PARA_FFLAGS=$( echo ${archfileline##%OMP_FFLAGS} )
	417	# OMP additional links
	418	archfileline=$( grep -i '^%OMP_LD' arch.fcm )
	419	PARA_LD=$( echo ${archfileline##%OMP_LD} )
	420	elif [[ "$parallel" == "mpi_omp" ]]
	421	then
	422	CPP_KEY="$CPP_KEY CPP_PARA CPP_MPI CPP_OMP"
	423	# MPI additional compilation options
	424	archfileline=$( grep -i '^%MPI_FFLAGS' arch.fcm )
	425	PARA_FFLAGS=$( echo ${archfileline##%MPI_FFLAGS} )
	426	# OMP additional compilation options
	427	archfileline=$( grep -i '^%OMP_FFLAGS' arch.fcm )
	428	PARA_FFLAGS="${PARA_FFLAGS} "$( echo $archfileopt ${archfileline##%OMP_FFLAGS} )
	429	# MPI additional links
	430	archfileline=$( grep -i '^%MPI_LD' arch.fcm )
	431	PARA_LD=$( echo ${archfileline##%MPI_LD} )
	432	# OMP additional links
	433	archfileline=$( grep -i '^%OMP_LD' arch.fcm )
	434	PARA_LD="${PARA_LD} "$( echo $archfileopt ${archfileline##%OMP_LD} )
	435	fi
	436
	437	if [[ ( "$parallel" == "omp" \|\| "$parallel" == "mpi_omp" ) \
	438	&& "$compil_mod" == "debug" ]]
	439	then
	440	echo "Usually, parallelization with OpenMP requires some optimization."
	441	echo "We suggest switching to \"-dev\"."
	442	fi
	443
[1810]	444
	445	#==============================================================================
[4283]	446	if [ "$veget" = "true" -o "$veget" = "orchidee1.9" -o "$veget" = "orchidee2.0" -o "$veget" = "orchidee2.1" -o "$veget" = "orchideetrunk" ]
[1463]	447	then
[1810]	448
[4426]	449	INCLUDE="${INCLUDE} ${ORCH_INCDIR}"
[1772]	450	CPP_KEY="$CPP_KEY CPP_VEGET"
[1810]	451	# temporary, for Orchidee versions 1.9.* (before openmp activation)
	452	if [[ "$veget" == "orchidee1.9" ]] ; then
	453	CPP_KEY="$CPP_KEY ORCHIDEE_NOOPENMP"
	454	fi
	455	if [[ "$veget" == "orchidee2.0" ]] ; then
[4426]	456	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob -lorchidee"
[3435]	457	CPP_KEY="$CPP_KEY ORCHIDEE_NOUNSTRUCT"
	458	elif [[ "$veget" == "orchidee2.1" ]] ; then
[4283]	459	CPP_KEY="$CPP_KEY ORCHIDEE_NOLIC"
[4426]	460	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob -lorchidee"
[4283]	461	elif [[ "$veget" == "orchideetrunk" ]] ; then
[4426]	462	orch_libs="-lorchidee"
[1810]	463	else
[4426]	464	orch_libs="-lsechiba -lparameters -lstomate -lparallel -lorglob"
[1810]	465	fi
[4426]	466	LIB="${LIB} ${ORCH_LIBDIR} ${orch_libs}"
	467	# for lib in ${orch_libs} ; do
	468	# if [ -f ${ORCH_LIBDIR}/lib${LIBPREFIX}$lib.a ] ; then
	469	# LIB="${LIB} -l${LIBPREFIX}$lib "
	470	# fi
	471	# done
[1810]	472	elif [[ "$veget" != "false" ]] ; then
[1772]	473	echo "Option -v $veget does not exist"
	474	echo "Use ./makelmdz -h for more information"
	475	exit
[1463]	476	fi
	477
[4669]	478	if [[ "$inlandsis" == "true" ]]
	479	then
	480	CPP_KEY="$CPP_KEY CPP_INLANDSIS"
	481	src_dirs="$src_dirs phy${physique}/inlandsis"
	482	fi
	483
	484
	485	if [[ "$rad" == "rrtm" ]]
	486	then
	487	CPP_KEY="$CPP_KEY CPP_RRTM"
	488	src_dirs="$src_dirs phy${physique}/rrtm"
	489	fi
	490	if [[ "$rad" == "ecrad" ]]
	491	then
	492	CPP_KEY="$CPP_KEY CPP_ECRAD"
	493	src_dirs="$src_dirs phy${physique}/ecrad"
	494	fi
	495
	496	if [[ "$dust" == "true" ]]
	497	then
	498	CPP_KEY="$CPP_KEY CPP_Dust"
	499	src_dirs="$src_dirs phy${physique}/Dust"
	500	fi
	501
	502	if [[ "$strataer" == "true" ]]
	503	then
	504	CPP_KEY="$CPP_KEY CPP_StratAer"
	505	src_dirs="$src_dirs phy${physique}/StratAer"
	506	fi
	507
[1810]	508	#===============================================================================
[4489]	509	INCLUDE="$INCLUDE ${NETCDF95_INCDIR}"
	510	LIB="$LIB ${NETCDF95_LIBDIR} -l${LIBPREFIX}netcdf95"
	511
[1463]	512	if [[ $io == ioipsl ]]
	513	then
	514	CPP_KEY="$CPP_KEY CPP_IOIPSL"
[4426]	515	INCLUDE="$INCLUDE ${IOIPSL_INCDIR}"
	516	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl"
[2097]	517	elif [[ $io == mix ]]
[1897]	518	then
	519	# For now, xios implies also using ioipsl
	520	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS"
[4426]	521	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
	522	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl ${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios -l${LIBPREFIX}stdc++"
[2097]	523	elif [[ $io == xios ]]
	524	then
	525	# For now, xios implies also using ioipsl
	526	CPP_KEY="$CPP_KEY CPP_IOIPSL CPP_XIOS CPP_IOIPSL_NO_OUTPUT"
[4426]	527	INCLUDE="$INCLUDE ${IOIPSL_INCDIR} ${XIOS_INCDIR}"
	528	LIB="$LIB ${IOIPSL_LIBDIR} -l${LIBPREFIX}ioipsl ${XIOS_LIBDIR} -l${LIBPREFIX}stdc++ -l${LIBPREFIX}xios -l${LIBPREFIX}stdc++"
[1463]	529	fi
	530
	531	if [[ "$cosp" == "true" ]]
	532	then
	533	CPP_KEY="$CPP_KEY CPP_COSP"
[3232]	534	# COSP_PATH="$LIBFGCM/phylmd/cosp"
	535	src_dirs="$src_dirs phy${physique}/cosp"
[1463]	536	# LIB="${LIB} -l${LIBPREFIX}cosp"
[3232]	537	# opt_dep="$opt_dep cosp"
	538	# lcosp="-l${LIBPREFIX}cosp"
	539	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cosp'
[1463]	540	fi
	541
[3359]	542	if [[ "$cosp2" == "true" ]]
	543	then
	544	CPP_KEY="$CPP_KEY CPP_COSP2"
	545	src_dirs="$src_dirs phy${physique}/cosp2"
	546	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cosp2'
	547	fi
	548
[3491]	549	if [[ "$cospv2" == "true" ]]
	550	then
	551	CPP_KEY="$CPP_KEY CPP_COSPV2"
	552	src_dirs="$src_dirs phy${physique}/cospv2"
	553	INCLUDE="$INCLUDE"' -I$(LIBF)/'phy${physique}'/cospv2'
	554	fi
[3359]	555
[3491]	556
[3793]	557
[3835]	558	#add new ocean skin modelisation to source dir by default
[2690]	559
[3835]	560	src_dirs="$src_dirs phy${physique}/Ocean_skin"
	561
	562
[1551]	563	INCLUDE="$INCLUDE ${NETCDF_INCDIR}"
[4426]	564	LIB="$LIB ${NETCDF_LIBDIR} ${NETCDF_LIB}"
[1463]	565
	566	########################################################################
	567	# calcul du nombre de dimensions
	568	########################################################################
	569
	570
	571	dim_full=$dim
	572	dim=`echo $dim \| sed -e 's/[^0-9]/ /g'`
	573	set $dim
	574	dimc=$#
	575	echo calcul de la dimension
	576	echo dim $dim
	577	echo dimc $dimc
	578
	579	########################################################################
	580	# Gestion des dimensions du modele.
	581	# on cree ou remplace le fichier des dimensions
	582	########################################################################
	583
[1695]	584	cd $LIBFGCM/grid
	585	if [[ -f dimensions.h ]]
	586	then
	587	echo 'ATTENTION: vous etes sans doute en train de compiler le modele par ailleurs'
	588	echo "Attendez que la premiere compilation soit terminee pour relancer la suivante."
	589	echo "Si vous etes sur que vous ne compilez pas le modele par ailleurs,"
	590	echo vous pouvez continuer en repondant oui.
	591	echo "Voulez-vous vraiment continuer?"
[1755]	592	echo ""
	593	echo "WARNING: you are probably already compiling the model somewhere else."
	594	echo "Wait until the first compilation is finished before launching this one."
	595	echo "If you are sure that you are not compiling elsewhere, just answer "
	596	echo "yes (or 'oui') to the question below to proceed."
	597	echo "Do you wish to continue?"
[1695]	598	read reponse
[1755]	599	if [[ $reponse == "oui" \|\| $reponse == "yes" ]]
[1695]	600	then
[1696]	601	\rm -f $LIBFGCM/grid/dimensions.h
[1695]	602	else
	603	exit
	604	fi
	605	fi
	606
[1463]	607	cd $LIBFGCM/grid/dimension
	608	./makdim $dim
[2202]	609	if (($? != 0))
	610	then
	611	exit 1
	612	fi
	613
[1463]	614	cat $LIBFGCM/grid/dimensions.h
	615	cd $LMDGCM
	616
	617	########################################################################
	618	# Differentes dynamiques (3d, 2d, 1d)
	619	########################################################################
	620
[1810]	621	if (( $dimc == 3 )) ; then
[2238]	622	src_dirs="$src_dirs $filtre dyn3d_common dyn3d${FLAG_PARA}"
[2239]	623	if [[ $physique != "nophys" ]] ; then
[2417]	624	src_dirs="$src_dirs dynphy_lonlat dynphy_lonlat/phy${phys_root}"
	625	libdyn_phy="-ldynphy_lonlat"
	626	LIBDYN_PHYS='$(LIBO)/libdynphy_lonlat.a'
	627	INCLUDE="$INCLUDE "'-I$(LIBF)/dynphy_lonlat'
	628	INCLUDE="$INCLUDE "'-I$(LIBF)/dynphy_lonlat/'"phy${phys_root}"
[2239]	629	fi
[1810]	630	cd $LIBFGCM/grid
	631	\rm fxyprim.h
	632	cp -p fxy_${grille}.h fxyprim.h
[1463]	633	filtre="FILTRE=$filtre"
[2016]	634	INCLUDE="$INCLUDE "'-I$(LIBF)/dyn3d${FLAG_PARA} -I$(LIBF)/dyn3d_common '
[1810]	635	elif (( $dimc == 2 )) ; then
[2239]	636	src_dirs="$src_dirs dyn2d"
[1810]	637	filtre="FILTRE= L_FILTRE= "
	638	INCLUDE="$INCLUDE "'-I$(LIBF)/dyn2d'
	639	elif (( $dimc == 1 )) ; then
[2239]	640	#src_dirs="$src_dirs dyn3d dyn3d_common filtrez"
	641	src_dirs="$src_dirs phy${physique}/dyn1d"
[2023]	642	CPP_KEY="$CPP_KEY CPP_1D"
[2239]	643	filtre="L_DYN= DYN= FILTRE= L_FILTRE= "
	644	#INCLUDE="$INCLUDE "'-I$(LIBF)/dyn3d -I$(LIBF)/dyn3d_common ' # Pas tres propre
	645	INCLUDE="$INCLUDE "' -I$(LIBF)/phy'"$physique"'/dyn1d'
[1463]	646	else
[1810]	647	echo Dimension dimc=$dimc pas prevu ; exit
[1463]	648	fi
	649
	650	cd $LMDGCM
	651
[2112]	652	########################################################################
	653	# library directory name:
	654	########################################################################
[1463]	655
[4186]	656	nomlib=`echo ${arch}_${physique}_${rad}_${dim_full}_${grille}_${compil_mod}_parall${parallel}_${CPP_KEY}_${FLAG_PARA} \| sed -e 's/ //g' -e 's/-//g ' \| sed -e 's/CPP_//g'`
[2112]	657	echo "Path to library: "$nomlib
	658
[1463]	659	########################################################################
[2112]	660	# Cleanup for a full recompilation, if requested
	661	########################################################################
	662
	663	if [[ $full == "full" ]]
	664	then
	665	# remove makefile and librairies
	666	echo "-full option: recompiling from scratch"
	667	\rm -f makefile
	668	\rm -rf "${LIBOGCM}/${nomlib}"
	669	fi
	670
	671	########################################################################
[1463]	672	# Avant de lancer le make, on recree le makefile si necessaire
	673	########################################################################
	674	########################################################################
	675	# c'est a dire dans 3 cas:
	676	# 1. si la liste des fichiers .F et .h a ete modifiee depuis la
	677	# derniere creation du makefile
	678	# 2. si le fichier contenant cette liste "liste_des_sources"
	679	# n'existe pas.
	680	# 3. Si le makefile n'existe pas.
	681	########################################################################
	682	cd $LMDGCM
[1810]	683
[1463]	684
[2238]	685	if [[ -r .makelmdz ]]
[1463]	686	then
[2238]	687	old_lmdz_configuration=$(cat .makelmdz )
	688	else
	689	old_lmdz_configuration=""
	690	fi
	691	lmdz_configuration="$src_dirs"
	692	if [[ "$lmdz_configuration" != "$old_lmdz_configuration" ]]
	693	then
	694	configuration_change="true"
	695	else
	696	configuration_change="false"
	697	fi
	698
[2250]	699	mkdir -p make_dir
	700	suf_make=`echo $src_dirs \| sed -e 's/\//_/g' -e 's/ /_/g'`
	701	echo suf_make $suf_make
	702
[4085]	703	########################################################################
	704	# (re)Creation du makefile
	705	########################################################################
	706
	707	echo "Controle de la necessite de recreer le makefile"
[2250]	708	\rm tmp77 tmp90
	709	for dir in $src_dirs ; do
[4085]	710	# On recupere la liste de tous les subroutine, use et include pour
	711	# vérifier que les dépendense n'ont pas changé et reconstuire le
	712	# makefile le cas échéant
	713	# On enleve tout apres ONLy et on met un "uniq" pour que ca ne recrée pas
	714	# le makefile si on se contente d'ajouter des lignes dans le ONLY
[4377]	715	exclude="replay automatic include"
[4085]	716	for str in subroutine "use " "include " ; do
[4377]	717	grep -i "$str" libf/$dir/.[Fh] \| sed -e "/$exclude/d" \| cut -d\( -f1 \| sed -e 's/[Oo][Nn][Ll][Yy]..$//' \| uniq >> tmp77
	718	grep -i "$str" libf/$dir/.F90 \| sed -e "/$exclude/d" \| cut -d\( -f1 \| sed -e 's/[Oo][Nn][Ll][Yy]..$//' \| uniq >> tmp90
[4085]	719	done
[2250]	720	done
	721
	722	liste77=make_dir/liste_des_sources_f77_$suf_make
	723	liste90=make_dir/liste_des_sources_f90_$suf_make
	724	makefile=make_dir/makefile_$suf_make
	725
[2269]	726	if [[ $configuration_change == "true" \|\| ! ( -r $makefile ) \|\| ! ( -r $liste90 ) \|\| ! ( -r $liste77 ) \|\| ` diff tmp77 $liste77 \| wc -w ` -ne 0 \|\| ` diff tmp90 $liste90 \| wc -w ` -ne 0 ]]
[2238]	727	then
[1463]	728	echo "les fichiers suivants ont ete crees ou detruits"
	729	echo "ou les fichiers suivants sont passes ou ne sont plus en Fortran 90"
[2250]	730	diff $liste77 tmp77
	731	diff $liste90 tmp90
	732	\cp -f tmp77 $liste77
	733	\cp -f tmp90 $liste90
[2238]	734	echo "Recreating the makefile"
	735	echo "src_dirs: $src_dirs"
	736	./create_make_gcm $src_dirs > tmp
[2250]	737	\mv -f tmp $makefile
[2238]	738	echo "New makefile created"
[4085]	739	else
	740	echo Pas besoin de recreer le makefile
[1463]	741	fi
	742
[4085]	743
[2250]	744	ln -sf $makefile makefile
[2238]	745	echo "$lmdz_configuration" > .makelmdz
	746
[1463]	747	#################################################################
	748	# Preparation de l'execution de la comande make
	749	#################################################################
	750
	751	source_code=${code}.F
[2239]	752	dirmain=dyn${dimc}d${FLAG_PARA}
[1463]	753	if [[ -r $LMDGCM/libf/dyn${dimc}d${FLAG_PARA}/${code}.F90 ]]
	754	then
	755	source_code=${code}.F90
[2016]	756	elif [[ -r $LMDGCM/libf/phy$physique/${code}.F90 ]] ; then
[2239]	757	dirmain=phy$physique
[2016]	758	source_code=${code}.F90
[2417]	759	elif [[ -r $LMDGCM/libf/dynphy_lonlat/phy$phys_root/${code}.F90 ]] ; then
	760	dirmain="dynphy_lonlat/phy${phys_root}"
[2239]	761	source_code=${code}.F90
	762	elif [[ -r $LMDGCM/libf/phy$physique/dyn1d/${code}.F90 ]] ; then
	763	dirmain=phy$physique/dyn1d
	764	source_code=${code}.F90
[1463]	765	fi
	766
	767	if [[ ! -d "${LIBOGCM}/${nomlib}" ]]
	768	then
	769	mkdir ${LIBOGCM}/${nomlib}
	770	# check we indeed managed to create the directory
	771	if [[ ! $? ]]
	772	then
	773	echo "Error: could not create directory ${LIBOGCM}/${nomlib}"
	774	exit
	775	fi
	776	fi
	777
	778	# where module files are created
	779	mod_loc_dir=$localdir
	780
	781	if [[ "$physique" != "nophys" ]]
	782	then
	783	INCLUDE="$INCLUDE"' -I$(LIBF)/phy'"$physique"
	784	fi
[1810]	785	INCLUDE="$INCLUDE"' -I'${LIBOGCM}/${nomlib}
[1463]	786
	787	# ranlib utility (check it exists or else default to ls)
	788	if [[ `which ranlib > /dev/null 2>&1 ; echo $?` -eq 0 ]]
	789	then
	790	ranlib="ranlib"
	791	else
	792	ranlib="ls"
	793	fi
	794
	795	# add CPP keys to COMPIL_FLAGS
	796	# (but first add -D before all CPP_KEY items)
	797	cpp_definitions=`echo $CPP_KEY \| sed -e 's/[A-Za-z_=0-9]*/-D&/g'`
	798	# (but add a -WF,-D before all CPP_KEY items) => for xlf on Vargas
	799	if [[ "${fcompiler:0:3}" == "xlf" ]]
	800	then
	801	cpp_definitions=`echo $CPP_KEY \| sed -e 's/[A-Za-z_=0-9]*/-WF,-D&/g'`
	802	fi
	803	COMPIL_FFLAGS="${COMPIL_FFLAGS} ${cpp_definitions}"
	804
	805	#################################################################
	806	# Execution du make
	807	#################################################################
[4669]	808	set -v
[1463]	809	$makecommand RANLIB=$ranlib -f $LMDGCM/makefile \
	810	OPTION_DEP="$opt_dep" OPTION_LINK="$LIB ${PARA_LD}" \
	811	OPTIM90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	812	OPTIMTRU90="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	813	OPTIM="${COMPIL_FFLAGS} ${PARA_FFLAGS}" \
	814	INCLUDE="$INCLUDE" \
	815	$filtre \
	816	LIBO=${LIBOGCM}/${nomlib} \
	817	"PHYS=$physique" \
[2239]	818	LIBPHY=${LIBPHY} \
[2326]	819	LIBPHY_COMMON=${LIBPHY_COMMON} \
[2239]	820	LIBDYN_PHYS=${LIBDYN_PHYS} \
[1463]	821	DIM=$dimc \
	822	FLAG_PARA=$FLAG_PARA \
[2239]	823	L_PHY="$lib_phy" \
	824	L_DYN_PHY="$libdyn_phy" \
[1810]	825	L_ADJNT=$adjnt \
[1463]	826	L_COSP="$lcosp" \
[3359]	827	L_COSP2="$lcosp2" \
[3491]	828	L_COSPV2="$lcospv2" \
[1463]	829	L_CHIMIE="$libchimie" \
	830	LOCAL_DIR="$localdir" \
	831	F77="$fcompiler" \
	832	F90="$fcompiler" \
	833	OPLINK="$LIB" \
	834	LINK="$linker" \
	835	GCM="$LMDGCM" \
	836	MOD_LOC_DIR=$mod_loc_dir \
	837	MOD_SUFFIX="mod" \
	838	AR=$arcommand \
[3051]	839	ARFLAGS="$arflags" \
[2239]	840	DIRMAIN=$dirmain \
[1463]	841	SOURCE=$source_code \
	842	PROG=$code
	843
[4669]	844	set +v
[1810]	845
[1696]	846	if [[ -r $LIBFGCM/grid/dimensions.h ]]
[1463]	847	then
	848	# Cleanup: remove dimension.h file
[1696]	849	\rm -f $LIBFGCM/grid/dimensions.h
[1463]	850	fi

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