source: BOL/script_install_amaury/install_lmdz.sh @ 5295

Last change on this file since 5295 was 5247, checked in by Laurent Fairhead, 11 days ago

We need different arch files for DYNAMICO as fcm2 does not recognize the shell command that is in the arch files
Also LD_LIBRARY_PATH is not always set and script crashes because of the set -u line if you try using a variable that is not set
LF
  • Property svn:executable set to *
File size: 40.1 KB
Line 
1#!/bin/bash
2set -eu  # error on command failure, and on unset variables
3export LC_ALL=C  # standardize awk format
4
5###########################################################################
6# Author : Laurent Fairhead et Frédéric Hourdin
7# Usage  : install_lmdz.sh -help
8#
9# bash installation script of the LMDZ model on different computer types :
10# Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS)
11#
12# The model is downloaded in the following directory tree
13# $MODEL/modipsl/modeles/...
14# using the "modipsl" infrastructure created by the "IPSL"
15# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
16# activities.
17# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
18# components.
19#
20# The sources of the models can be found in the "modeles" directory.
21# In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of
22# input-outputs using the NetCDF library).
23#
24# The script downloads various source files (including a version of NetCDF)
25# and utilities, compiles the model, and runs a test simulation in a
26# minimal configuration.
27#
28# Prerequisites : gfortran, bash or ksh, wget, gunzip, tar, ...
29#
30# Modif 18/11/2011
31#    changes for option real 8.
32#      We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
33#      but with -r4 for netcdf. Variable real must be set to
34#      r4 or r8 at the beginning of the script below.
35#
36###########################################################################
37
38### Functions
39
40function myget {
41  # Get a file from LMDZ repository, make it executable if .(ba)sh
42  local url=$1
43
44  local filename
45  filename=$(basename "$url")
46
47  wget --no-check-certificate -nv "http://lmdz.lmd.jussieu.fr/pub/$url"
48  if [[ $filename =~ .*\.(ba)?sh ]]; then chmod +x "$filename"; fi
49}
50
51function get_svn_branch {
52  local url=$1
53  local rev=$2
54  local res
55
56  res=$(svn log -v -q "$url" -r "$rev" -l 1 | cut -d "/" -f -4)
57  if echo "$res" | grep -q "/trunk/"; then
58    res=$(echo "$res" | grep "/trunk/" | head -1 | cut -d "/" -f 2-3)
59  elif echo "$res" | grep -q "/branches/"; then
60    res=$(echo "$res" | grep "/branches/" | head -1 | cut -d "/" -f 2-4)
61  else
62    echo "Could not determine svn branch for $url, r=$rev"
63  fi
64  echo "$res"
65}
66
67function set_default_params {
68    # Valeur par défaut des parametres
69    svn_lmdz=""
70    version="20240508.CM7"
71
72    netcdf=1
73    bench=1
74    SCM=0
75    veget="none"
76    grid_resolution="32x32x39"
77    benchphysiq=""
78    compphysiq="lmd"
79    is_1D="n"
80    fortran_file="gcm"
81
82    parallel="none"
83    trusting="testing"
84    MODEL=""
85
86    with_xios=0
87    opt_makelmdz_xios=""
88
89    icolmdz=0
90    DYNAMICO_VERS=374a3c66
91
92    rad="rrtm"
93
94    compile_with_fcm=1
95
96    cosp="none"
97    aerosols=0
98    inlandsis=0
99
100    make_j=8
101    clean_install=1
102
103    # Check if on a Mac /!\ Probably doesn't work anymore, to fix one day...
104    if [[ $(uname) = "Darwin" ]]; then
105        export MAKE="make"
106    fi
107
108    optim_flag="-prod"
109    arch="local"
110
111    arch="local-gfortran"
112    arch_dir=""
113
114    jobcmd=""
115}
116
117function read_cmdline_args {
118    while (($# > 0)); do
119        case $1 in
120            "-h") cat <<........fin
121        $0 [ -v version ] [ -r svn_release ]
122               [ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ]
123               [-name LOCAL_MODEL_NAME] [-rad RADIATIF]
124
125        -v       "version" like 20150828.trunk, see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk (default <$version>)
126
127        -r       "svn_release" : either the svn release number or "last" (default <$svn_lmdz>)
128
129        -parallel parallel support: mpi, omp, mpi_omp (mpi with openMP) or none (default: <$parallel>)
130
131        -d        "grid resolution": should be among the available benchs if -bench 1 (valid values: 48x36x19, 48x36x39) (default : <$grid_resolution>)
132
133        -bench     activating the bench or not (0/1) (default: <$bench>)
134
135        -unstable  use unstable tar instead of testing
136
137        -name      name of the folder to install to (default <$MODEL>)
138
139        -netcdf    0, 1 or PATH. 0: do not download NetCDF, look for it in standard locations (/usr);  1: download and compile NetCDF; PATH: full path to an existing installed NetCDF library (default: <$netcdf>)
140
141        -xios      use (download and compile) the XIOS library (will compile the parallel NetCDF4-HDF5 library) (requires to also have -parallel mpi_omp)
142
143        -cosp       to run with cospv1 or cospv2 [none/v1/v2] (default <$cosp>)
144
145        -rad        radiative code: oldrad, rrtm or ecrad (default <$rad>)
146
147        -nofcm      to compile without fcm
148
149        -SCM        install 1D version automatically
150
151        -debug      compile everything in debug mode
152
153        -benchphysiq   to choose which physics.def package to use in the bench (default <$benchphysiq>)
154
155        -compilephysiq   physics to compile the model with (default <$compphysiq>)
156
157        -veget      surface/vegetation scheme treatment controlled by the single variable veget which can have the following values: none: bucket scheme (default); CMIP6 | veget2.0: orchidee version used in CMIP exercise, rev 5661; veget2.2: orchidee branch 2.2, rev 8529 (bundled); number: orchidee version number  [only orch>2.0] (default $veget)
158
159        -spla       activate interactive aerosols
160
161        -inlandsis  activate new snow scheme
162
163        -arch       name of the arch to use (default <$arch>)
164
165        -arch_dir   where to find the arch files (default <$arch_dir>)
166
167        -make_j     number of processes to parallelize installations (default <$make_j>)
168
169        -jobcmd     command prepended to fcm compile jobs, e.g. "srun" (default <$jobcmd>)
170
171        -noclean    will only download necessary files (but no thorough check is made on the integrity of existing files), and will recompile everything (very quick if it's already been compiled before)
172
173        -icolmdz    to compile the icolmdz executable as well as the lonlat one
174
175........fin
176                  exit 1;;
177            "-v") version=$2; shift; shift;;
178            "-r") svn_lmdz=$2; shift; shift;;
179            "-d") grid_resolution=$2; shift; shift;;
180            "-unstable") trusting="unstable"; shift;;
181            "-cosp") cosp=$2
182                     case $cosp in
183                         "none"|"v1"|"v2") cosp=$2; shift; shift;;
184                         *) echo "Only none v1 v2 for cosp option"; exit 1
185                     esac;;
186            "-nofcm") compile_with_fcm=0; echo "This option will be reactivated soon (promesse du 8dec2022)"; exit 1;  shift;;
187            "-SCM") SCM=1; shift;;
188            "-rad") rad=$2
189                    case $rad in
190                        "oldrad"|"rrtm"|"ecrad") rad=$2; shift; shift;;
191                        *) echo "Only oldrad rrtm ecrad for rad option"; exit 1
192                    esac;;
193            "-parallel") parallel=$2
194                         case $parallel in
195                             "none"|"mpi"|"omp"|"mpi_omp") parallel=$2; shift; shift;;
196                             *) echo "Only none mpi omp mpi_omp for the parallel option"; exit 1
197                         esac;;
198            "-bench") bench=$2; shift; shift;;
199            "-debug") optim_flag="-debug"; shift;;
200            "-name") MODEL=$2; shift; shift;;
201            "-netcdf") netcdf=$2; shift; shift;;
202            "-benchphysiq") benchphysiq=$2; shift; shift;;
203            "-compilephysiq") compphysiq=$2; shift; shift;;
204            "-xios") with_xios=1; shift;;
205            "-arch") arch=$2; shift; shift;;
206            "-arch_dir") arch_dir=$2; shift; shift;;
207            "-veget") veget=$2; shift; shift;;
208            "-spla") aerosols=1; shift;;
209            "-inlandsis") inlandsis=1; shift;;
210            "-make_j") make_j=$2; shift; shift;;
211            "-jobcmd") jobcmd=$2; shift; shift;;
212            "-noclean") clean_install=0; shift;;
213            "-icolmdz") icolmdz=1; shift;;
214            *)  bash install_lmdz.sh -h; exit 1
215        esac
216    done
217
218    # Isotopes : Compile and run with isotopes if lmdz_phys="lmdiso" in main.sh
219    if [[ $compphysiq = "lmdiso" ]]; then isotopes=1; else isotopes=0; fi
220
221    # Option de compilation pour Cosp
222    case $cosp in
223        v1) opt_cosp="-cosp true";;
224        v2) opt_cosp="-cospv2 true";;
225        *) opt_cosp=""
226    esac
227
228    #Define veget-related suffix for gcm name
229    if [[ $veget = 'none' ]]; then
230        suff_orc=''
231    else
232        suff_orc='_orch'
233    fi
234
235
236    if [[ $parallel = "none" ]]; then
237        suff_para='_seq'
238    else
239        suff_para='_para_mem'
240    fi
241
242    if [[ $with_xios = 1 ]]; then opt_makelmdz_xios="-io xios"; fi
243
244    if [[ $aerosols = 1 ]]; then
245      opt_aer="-dust true"; suff_aer="_spla"
246    else
247      opt_aer=""; suff_aer=""
248    fi
249
250    if [[ $inlandsis = 1 ]]; then
251       opt_inlandsis="-inlandsis true"
252    else
253       opt_inlandsis=""
254    fi
255
256    if [[ $isotopes = 1 ]]; then
257      opt_isotopes="-isotopes true"; suff_iso="_iso"
258    else
259      opt_isotopes="" ; suff_iso=""
260    fi
261
262    # set default arch if parallel
263    if [[ $arch = "local-gfortran" && $parallel != "none" ]]; then
264      arch="local-gfortran-parallel"
265      echo "Switching default arch to $arch"
266    fi
267
268    # Name of the model's folder. The convention taken here is that models that requires different compilation sources should have a different names.
269    local xios_name=""
270    if [[ $with_xios = 1 ]]; then xios_name="XIOS"; fi
271    if [[ $MODEL = "" ]]; then MODEL="./LMDZ$version${svn_lmdz}OR$veget$xios_name"; fi
272
273    if [[ $arch_dir = "" ]]; then
274      arch_dir="$MODEL/modipsl/config/IPSLCM7/ARCH/";
275    elif ! readlink -fe "$arch_dir" >/dev/null; then
276      echo "STOP: no arch dir <$arch_dir>"; exit 1
277    fi
278
279    if ! (echo "$grid_resolution" | grep -q "x"); then
280      is_1D="y"
281      fortran_file="lmdz1d"
282    fi
283}
284
285function ensure_correct_option_combinations {
286    # Check on veget version
287    if [[ $veget != 'none' && $veget != "CMIP6" && $veget != "orch2.0" && $veget != "orch2.2" ]]; then
288        re='^[0-9]+$'
289        if ! [[ $veget =~ $re ]]; then
290            echo 'Valeur de l option veget non valable'; exit 1
291        fi
292    fi
293
294    ## if compiling icolmdz, XIOS must be set
295    if [[ $icolmdz = 1 && $with_xios = 0 ]]; then
296      echo "Error, you must set -xios to compile the icolmdz executable"; exit 1
297    fi
298    ## if also compiling XIOS, parallel must be mpi_omp
299    if [[ $with_xios = 1 && $parallel != "mpi_omp" ]]; then
300        echo "Error, you must set -parallel mpi_omp if you want XIOS"; exit 1
301    fi
302
303    if [[ $cosp = "v2" && $with_xios = 0 ]]; then
304        echo "Error, Cospv2 cannot run without Xios"; exit 1
305    fi
306
307    # STOP if trying to use both ORCHIDEE and Isotopes :
308    if [[ $isotopes = 1 && $veget != "none" ]]; then
309      echo "STOP: You cannot run LMDZ with ORCHIDEE and ISOtopes at the same time"; exit 1
310    fi
311
312    # STOP if trying to use both SPLA and Isotopes :
313    if [[ $isotopes = 1 && $aerosols = 1 ]]; then
314      echo "STOP: You cannot run LMDZ with Isotopes and aerosols=spla at the same time"; exit 1
315    fi
316
317    # (Temporary) STOP if trying to use Isotopes with XIOS :
318    if [[ $isotopes = 1 && $with_xios = 1 ]]; then
319      echo "STOP: Isotopes cannont yet be run with XIOS"; exit 1
320    fi
321
322    if [[ $aerosols = 1 && $rad != "rrtm" ]]; then
323      echo "STOP: For the time being, <aerosols=spla> requires <rad=rrtm>"; exit 1
324    fi
325}
326
327function check_available_software {
328    local required_soft=("wget" "tar" "gzip" "make" "gcc" "cmake" "m4" "c++")
329    echo "Checking if required software is available (${required_soft[*]})"
330    for logiciel in "${required_soft[@]}"; do
331        if [[ $(which "$logiciel") = "" ]]; then
332            echo "You must first install $logiciel on your system"; exit 1
333        fi
334    done
335
336    cat <<eod > tt.f90
337print*,'coucou'
338end
339eod
340    $compiler tt.f90 || a.out
341    ./a.out >| tt
342    if [[ $(< tt sed -e 's/ //g' ) != "coucou" ]]; then
343        echo "problem installing with compiler $compiler"; exit 1
344    fi
345    rm tt a.out tt.f90
346}
347
348function download_model {
349    if [[ $clean_install = 1 ]]; then rm -rf "$MODEL"; fi
350
351    mkdir -p "$MODEL"
352    MODEL=$(readlink -e -f "$MODEL"); echo "MODEL: $MODEL"  # absolute path
353    if [[ ! -d "$MODEL/modipsl" ]]; then
354        echo "Downloading a slightly modified version of modipsl+LMDZ"
355        cd "$MODEL"
356        getlog="$(pwd)/get.log"
357        echo "logfile : $getlog"
358        myget "src_archives/$trusting/modipsl.$version.tar.gz" &>> get.log
359        echo "install_lmdz.sh wget_OK $(date)"
360
361        gunzip "modipsl.$version.tar.gz" &>> get.log
362        tar xf "modipsl.$version.tar" &>> get.log
363        rm "modipsl.$version.tar"
364
365        cd - &> /dev/null
366    ## checkout DYNAMICO and icosa interface in modipsl/modeles if needed
367       if [[ $icolmdz = 1 ]]; then
368         TMPLOCDIR=$(pwd)
369         cd "$MODEL/modipsl/modeles/"
370         getlog="$(pwd)/get.log"
371         git clone https://gitlab.in2p3.fr/ipsl/projets/dynamico/dynamico.git DYNAMICO ; cd DYNAMICO ; git checkout master; cd .. &>> get.log
372         svn checkout https://svn.lmd.jussieu.fr/LMDZ/ICOSA_LMDZ &>> get.log
373         cd "$TMPLOCDIR" &> /dev/null
374       fi
375    fi
376}
377
378function init_arch {
379    set +e; arch_dir=$(readlink -f "$arch_dir"); set -e  # full path. readlink must be called *after* the path is created
380
381    # Check where default fcm, path, env are located - by default in $arch_path, instead in $MODEL/modipsl/modeles/LMDZ/arch/
382    local i fcm_path path_path env_path
383    for i in "path" "fcm" "env"; do
384      local varname=${i}_path
385      if [[ -f $arch_dir/arch-$arch.$i ]]; then
386          declare $varname="$arch_dir/arch-$arch.$i"
387      else
388          declare $varname="$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$i"
389          if [[ ! -f ${!varname} ]]; then
390              echo "STOP: no ${!varname}"; exit 1
391          fi
392      fi
393    done
394    default_fcm_path=$fcm_path
395    default_path_path=$path_path
396    default_env_path=$env_path
397
398    # check compiler
399    compiler=$(< "$default_fcm_path" grep "%COMPILER" | sed -e "s/%COMPILER\s*//")
400
401    # load env
402    # shellcheck disable=SC1090
403    if [[ -f $default_env_path ]]; then source "$default_env_path"; fi
404
405    local mpi_file  # can't be done before as it depends on sourcing the env
406    mpi_file=$(readlink -e -f "$(which mpif90)")
407    path_mpi=$(dirname "$mpi_file")
408    root_mpi=$(dirname "$path_mpi")
409}
410
411function install_arch {
412    local component=$1
413
414    # Use same .env for all components (for module compatibility)
415    cp -f "$default_env_path" "$MODEL/modipsl/modeles/$component/arch" &> /dev/null || true  # allow failure if we're copying the file to itself
416
417    # Use local .path and .fcm is available, otherwise default
418    if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.path" ]]; then
419        cp -f "$default_path_path" "$MODEL/modipsl/modeles/$component/arch"
420
421        if [[ $component = "ORCHIDEE" ]]; then
422            if [[ $orcbranch = "/tags/ORCHIDEE_2_0/ORCHIDEE" ]]; then  # 2.0 and before have a different fcm convention
423                sed -i'' -e "s/-I//" -e "s/-L//" "$MODEL/modipsl/modeles/ORCHIDEE/arch/arch-$arch.path"  # /!\ we only replace first occurence on purpose
424            fi
425        fi
426    fi
427    if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.fcm" ]]; then
428        cp -f "$default_fcm_path"  "$MODEL/modipsl/modeles/$component/arch"
429
430        if [[ $component = "XIOS" ]]; then
431            # Adapt for XIOS, which uses different naming conventions
432            sed -i'' -e "s/%COMPILER/%FCOMPILER/" -e "s/%LINK/%LINKER/" -e "s/-fdefault-real-8//" "$MODEL/modipsl/modeles/XIOS/arch/arch-$arch.fcm"
433        fi
434    fi
435}
436
437function install_netcdf {
438    echo "Installing Netcdf"
439    local ncdf_compiler="$compiler"
440
441    if [[ $netcdf = 0 ]]; then
442        ncdfdir=$(nf-config --prefix)
443    else
444        cd "$MODEL"
445
446        # Convert non-basic compiler
447        case $compiler in
448            mpif90) ncdf_compiler=$($compiler --version | head -n 1 | cut -d " " -f -1)
449        esac
450
451        case $ncdf_compiler in
452            gfortran | GNU) ncdf_compiler="gfortran"; opt1="-compiler gnu"; opt2="-CC gcc -FC gfortran -CXX g++";;
453            *)      echo "unexpected compiler $ncdf_compiler for netcdf"; exit 1
454        esac
455
456        case $with_xios in
457            0) script_install_netcdf="install_netcdf4_hdf5_seq.bash"
458               ncdfdir="netcdf4_hdf5_seq"
459               opt_="$opt1";;
460            1) script_install_netcdf="install_netcdf4_hdf5.bash"
461               ncdfdir="netcdf4_hdf5"
462               opt_="$opt2 -MPI $root_mpi";;
463            *) echo "with_xios=$with_xios, should be 0 or 1"; exit 1
464        esac
465        if [[ $netcdf = 1 ]]; then
466           ncdfdir="$MODEL/$ncdfdir"
467        else
468           mkdir -p "$netcdf"; ncdfdir="$netcdf/$ncdfdir"
469        fi
470
471        echo "Repertoire netcdf $ncdfdir"
472        if [[ ! -d $ncdfdir ]]; then
473            netcdflog=$(pwd)/netcdf.log
474            echo "----------------------------------------------------------"
475            echo "Compiling the Netcdf library"
476            echo "----------------------------------------------------------"
477            echo "log file : $netcdflog"
478            myget script_install/$script_install_netcdf &>> "$netcdflog"
479            chmod u=rwx $script_install_netcdf
480            # shellcheck disable=SC2086
481            ./$script_install_netcdf -prefix "$ncdfdir" $opt_ &>> "$netcdflog"
482        fi
483
484        # Add to path
485        export PATH="$ncdfdir/bin:$PATH"
486
487        #----------------------------------------------------------------------------
488        # LF rajout d'une verrue, pour une raison non encore expliquee,
489        # la librairie est parfois rangée dans lib64 et non dans lib
490        # par certains compilateurs
491        if [[ ! -e lib && -d lib64 ]]; then ln -s lib64 lib; fi
492        #----------------------------------------------------------------------------
493
494        echo "install_lmdz.sh netcdf_OK $(date)"
495    fi
496
497    cat >test_netcdf90.f90 <<EOF
498    use netcdf
499    print *, "NetCDF library version: ", nf90_inq_libvers()
500    end
501EOF
502
503    if $ncdf_compiler -I"$ncdfdir"/include test_netcdf90.f90 -L"$ncdfdir"/lib -lnetcdff -lnetcdf -Wl,-rpath="$ncdfdir"/lib && ./a.out; then
504        rm test_netcdf90.f90 a.out
505    else
506        cat <<EOF
507Failed test program using NetCDF-Fortran. You can:
508- check that you have NetCDF-Fortran installed in your system
509- or specify an installation directory with option -netcdf of install_lmdz.sh
510- or download and compile NetCDF-Fortran with option -netcdf 1 of install_lmdz.sh
511EOF
512        exit 1
513    fi
514
515    # Compile NetCDF95
516    cd "$MODEL/modipsl/modeles/LMD"*
517    echo "Installing NetCDF95"
518    cd "$MODEL"
519    if [[ ! -d "NetCDF95-0.3" ]]; then
520        myget src_archives/netcdf/NetCDF95-0.3.tar.gz
521        tar -xf NetCDF95-0.3.tar.gz
522        rm NetCDF95-0.3.tar.gz
523        cd NetCDF95-0.3
524        mkdir -p build && cd build
525        netCDF_INCLUDE_DIR=$(nc-config --includedir) netCDF_LIBRARY=$(nc-config --libdir) cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="$ncdfdir" -DCMAKE_INSTALL_PREFIX="$MODEL/modipsl"
526        make install
527    fi
528}
529
530function install_IOIPSL {
531    install_arch "IOIPSL"
532
533    cd "$MODEL/modipsl/modeles/IOIPSL"
534    ioipsllog="$(pwd)/ioipsl.log"
535    echo "Compiling IOIPSL, the interface library with Netcdf $(date) (log: $ioipsllog)"
536
537    echo "$jobcmd ./makeioipsl_fcm -j $make_j -arch $arch $optim_flag" > compile.sh
538    chmod +x compile.sh
539    echo "Compiling IOIPSL using $(\cat compile.sh)"
540    if ! ./compile.sh &> "$ioipsllog"; then
541        echo "STOP: IOIPSL compile failed, exiting"; exit 1
542    fi
543
544    # Link to modipsl/bin
545    cp -f bin/* ../../bin
546
547    echo "IOIPSL compiled $(date)"
548}
549
550function install_XIOS {
551    if [[ $with_xios = 1 ]]; then
552        cd "$MODEL/modipsl/modeles"
553        xioslog="$(pwd)/XIOS/xios.log"
554        echo "##########################################################"
555        echo "Compiling XIOS (log $xioslog) $(date)"
556        echo "##########################################################"
557
558        # Download XIOS
559        local xios_http="http://forge.ipsl.fr/ioserver/svn/XIOS2/branches/xios-2.6"
560        local xios_rev="2568"
561       
562        cd "$MODEL/modipsl/modeles"
563        set +e; svn co -r $xios_rev $xios_http XIOS; set -e
564
565        cd XIOS
566
567        install_arch "XIOS"
568
569        echo "$jobcmd ./make_xios --job $make_j --arch $arch" > compile.sh
570        chmod +x compile.sh
571        echo "$(date) Compiling XIOS using $(\cat compile.sh) (log in $xioslog)"
572        if ! ./compile.sh &> "$xioslog"; then
573            echo "STOP: XIOS compilation failed, exiting"; exit 1
574        fi
575
576        echo "Compiled XIOS $(date)"
577    fi
578}
579
580function get_orchidee_version {  # Set / Check ORCHIDEE version
581    echo "Checking Orchidee source version"
582    local fetch_rev=""
583    orcbranch=""
584    case $veget in
585        "none") fcm_veget_version="false";;
586        "orch2.0" | "CMIP6") fcm_veget_version=orchidee2.0; fetch_rev=7906;;  # in previous tar we used 6592 but with some modifications to xios_orchidee.f90, which got integrated in 7906
587        "orch2.2") fcm_veget_version=orchidee2.1; orcbranch="/branches/ORCHIDEE_2_2/ORCHIDEE" ;; # the bundled version
588        *) fetch_rev=$veget; fcm_veget_version=orchidee2.1;;  # /!\ arbitary rev only works for orch>=2.1
589          # /!\ Note: for orch>=4, we should be using fcm_vegt_version="orchideetrunk". Below copied comment by Adriana in LMDZ_Setup docs:
590#          Avec orchidee2.1, on va compiler LMDZ avec le cle cpp ORCHIDEE_NOLIC. On ne va donc pas prendre en compte les avancements fait dans le trunk qui permet que les fractions lic soitent traité par ORCHIDEE. Ca marche très bien sans cela puisque dans tout façon c'est en cours de développement et ce n'est pas activé par default. En fait on devrait compiler le trunk avec -v orchideetrunk mais avec landice_opt>2, ce qui ne change rien par rapport à orchidee2.1
591#Si on voudrait activer landice_opt=2 , il faut compiler avec -v orchideetrunk.
592
593    esac
594
595    if [[ -n $fetch_rev ]]; then
596        echo "IF YOU INSTALL ORCHIDEE THE VERY FIRST TIME, ASK for PASSWORD at orchidee-help@listes.ipsl.fr"
597        local curr_rev
598        curr_rev=$(svn info "$MODEL/modipsl/modeles/ORCHIDEE" | grep Revision: | cut -d ":" -f 2 | cut -c 2-)
599        orcbranch=$(svn log -v -q svn://forge.ipsl.fr/orchidee/ -r "$fetch_rev" | grep ORCHIDEE | head -1 | sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' | awk '{print $2}')
600        if [[ $fetch_rev != "$curr_rev" ]]; then
601            echo "Fetching orch $fetch_rev from the repository (curr: $curr_rev)"
602            echo "branch is $orcbranch"
603            if [[ $fetch_rev -lt 4465 ]]; then echo 'ORCHIDEE version must be >=4465, exiting'; exit 1; fi
604            cd "$MODEL/modipsl/modeles"
605            rm -rf ORCHIDEE
606            svn co -r "$fetch_rev" "svn://forge.ipsl.fr/orchidee/$orcbranch"
607            cd - > /dev/null
608        fi
609    fi
610
611    # Check parallel LMDZ+ORCH
612    if [[ (! $veget = "none") && $parallel = "none" && ($used_lmdz_rev -lt 4894) ]]; then
613        echo "LMDZ revision must be >=4894 for orchidee without parallel support. Upgrade lmdz or use -parallel mpi_omp."; exit 1
614    fi
615}
616
617function compile_orchidee {
618    install_arch "ORCHIDEE"
619
620    if [[ $veget != "none" ]]; then
621        cd "$MODEL/modipsl/modeles/ORCHIDEE"
622
623        orchideelog="$(pwd)/orchidee.log"
624        echo "Compiling ORCHIDEE, the continental surface model (log $orchideelog) $(date)"
625
626        local xios_orchid
627        if [[ $with_xios = 1 ]]; then
628            xios_orchid="-xios";
629        else
630            xios_orchid="-noxios"
631        fi
632
633        if [[ $parallel != "none" && ! -d src_parallel ]]; then
634           echo "STOP: Orchidee version too old for parallel support"; exit 1
635        fi
636        echo "$jobcmd ./makeorchidee_fcm -j $make_j $xios_orchid $optim_flag -parallel $parallel -arch $arch" > compile.sh
637        chmod +x compile.sh
638        echo "Compiling ORCHIDEE using $(\cat compile.sh)"
639        if ! ./compile.sh &> "$orchideelog"; then
640            echo "STOP: ORCHIDEE compilation failed, exiting"; exit 1
641        fi
642        echo "Compiled ORCHIDEE $(date)"
643    fi
644}
645
646function get_lmdz_version {
647    echo "Checking LMDZ source version"
648    LMDZPATH=$(readlink -e -f "$MODEL/modipsl/modeles/LMD"*)
649    cd "$LMDZPATH"
650    lmdzlog="$(pwd)/lmdz.log"
651
652
653    if [[ -n $svn_lmdz ]]; then
654        local curr_rev
655        curr_rev=$(svn info "$MODEL/modipsl/modeles/LMD"* | grep Revision: | cut -d ":" -f 2 | cut -c 2-)
656        if [[ $svn_lmdz != "$curr_rev" ]]; then
657            local lmdzbranch
658            echo "Fetching LMDZ $svn_lmdz from the repository"
659            lmdzbranch=$(get_svn_branch "https://svn.lmd.jussieu.fr/LMDZ" "$svn_lmdz")
660            echo "branch is $lmdzbranch"
661            cd "$MODEL/modipsl/modeles"
662            rm -rf LMD*
663            svn co -r "$svn_lmdz" "https://svn.lmd.jussieu.fr/LMDZ/$lmdzbranch" LMDZ
664            cd - > /dev/null
665        fi
666        used_lmdz_rev=$svn_lmdz
667    else  # get svn from info
668        set +e; used_lmdz_rev=$(svn info | grep "Last Changed Rev" | cut -c 19-); set -e
669        if [[ -z $used_lmdz_rev ]]; then  # svn info failed
670            used_lmdz_rev=$(grep 'Revision: [0-9]' "$MODEL"/Read*.md | awk ' { print $2 } ' 2>/dev/null)
671            if [[ -z $used_lmdz_rev ]]; then echo "Could not determine lmdz version. This is likely an issue with the .tar itself, please report to LMDZ team."; exit 1; fi
672        fi
673    fi
674}
675
676function compile_lmdz {
677    install_arch "LMDZ"
678    cd "$LMDZPATH"
679
680    if [[ $used_lmdz_rev -le 4185 ]]; then
681        exe_name="bin/${fortran_file}_${grid_resolution}_phy${compphysiq}_${suff_para}${suff_orc}${suff_aer}${suff_iso}.e"
682    else
683        exe_name="bin/${fortran_file}_${grid_resolution}_phy${compphysiq}_${rad}${suff_para}${suff_orc}${suff_aer}${suff_iso}.e"
684    fi
685
686    local opt_rad
687    case $rad in
688        oldrad) iflag_rrtm=0; NSW=2; opt_rad="";;
689        rrtm)   iflag_rrtm=1; NSW=6
690            if [[ $used_lmdz_rev -le 4185 ]]; then
691                opt_rad="-rrtm true"
692            else
693                opt_rad="-rad rrtm"
694            fi;;
695        ecrad)  iflag_rrtm=2; NSW=6; opt_rad="-rad ecrad";;
696        *) echo "Only oldrad rrtm ecrad for rad option"; exit 1
697    esac
698    if [[ $used_lmdz_rev -le 4185 && $rad = "ecrad" ]]; then
699        echo "ecrad only available for LMDZ rev starting with 4186 "; exit 1
700    fi
701
702    # Compile
703    makelmdz="makelmdz_fcm $optim_flag -arch $arch -j $make_j"
704    local para_compile_opt="-mem -parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi
705    echo "$jobcmd ./$makelmdz $opt_rad $opt_cosp $opt_makelmdz_xios $opt_aer $opt_inlandsis $opt_isotopes -p $compphysiq -d ${grid_resolution} -v $fcm_veget_version $para_compile_opt $fortran_file" > compile.sh
706    echo "Compiling lmdz using $(\cat compile.sh) (log: $lmdzlog) $(date)"
707    chmod +x ./compile.sh
708    if ! ./compile.sh &> "$lmdzlog"; then
709        echo "STOP: LMDZ compilation failed, exiting"; exit 1
710    fi
711    echo "Finished LMDZ compilation $(date)"
712
713    # Check executable
714    if [[ ! -f $exe_name ]]; then
715        echo "STOP: Compilation failed, can't find the executable"; exit 1
716    else
717        echo "Compilation successful, the executable is $exe_name $(date)"
718    fi
719}
720
721function compile_icolmdzor {
722    if [[ $icolmdz = 1 ]]; then
723#      install_arch "DYNAMICO"
724      install_arch "ICOSA_LMDZ"
725
726      cd "$LMDZPATH"
727      local para_compile_opt="-parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi
728
729      # LMDZ physics package library already available in LMDZ/config/lib directory
730      # Compile DYNAMICO
731      cd ../DYNAMICO
732      cd arch
733      wget http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.env
734      wget http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.fcm
735      wget http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.path
736      cd ..
737
738      dynamicolog="$(pwd)/dynamico.log"
739      echo "Compile DYNAMICO"
740      echo "$jobcmd ./make_icosa $optim_flag -arch $arch -job $make_j $para_compile_opt -external_ioipsl -with_xios" > compile.sh
741      chmod +x ./compile.sh
742      if ! ./compile.sh &> "$dynamicolog"; then
743        echo "STOP: DYNAMICO compilation failed, exiting"; exit 1
744      fi
745      echo "Finished DYNAMICO compilation $(date)"
746
747      # Compile icosa_lmdz
748      cd ../ICOSA_LMDZ
749      icosalog="$(pwd)/icosa.log"
750      echo "Compile interface ICOSA_LMDZ"
751      echo "$jobcmd ./make_icosa_lmdz -arch $arch -j $make_j -nodeps -p lmd $optim_flag $para_compile_opt -with_orchidee" > compile.sh
752      chmod +x ./compile.sh
753      if ! ./compile.sh &> "$icosalog"; then
754        echo "STOP: ICOSA_LMDZ compilation failed, exiting"; exit 1
755      fi
756      echo "Finished ICOSA_LMDZ compilation $(date)"
757      echo "# Running environment for icosa_lmdz" > icosalmdz.env
758      echo "# "                                   >> icosalmdz.env
759      if [[ -v LD_LIBRARY_PATH ]]; then 
760        echo "export LD_LIBRARY_PATH=$ncdfdir/lib:$LD_LIBRARY_PATH" >> icosalmdz.env
761      else 
762        echo "export LD_LIBRARY_PATH=$ncdfdir/lib" >> icosalmdz.env
763      fi
764    fi
765}
766
767function run_bench {
768    local bench_cmd="./bench.sh"
769
770    cd "$MODEL/modipsl/modeles/LMDZ"*
771
772    if [[ $bench = "tuto" ]]; then
773        myget "Training/tutorial.tar"; tar xf tutorial.tar; cd TUTORIAL
774        ./init.sh
775    elif [[ $bench = 1 ]]; then
776      rm -rf "BENCH${grid_resolution}"
777      local bench=bench_lmdz_${grid_resolution}
778      if [[ $compphysiq = "lmdiso" ]]; then bench=bench_lmdz_iso_${grid_resolution}; fi
779
780      if [[ $is_1D = "y" ]] ; then  # 1D
781        myget "1D/1D.tar.gz"
782        mkdir -p "BENCH${grid_resolution}"
783        tar xf "1D.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1
784        cd "BENCH${grid_resolution}"
785        # Below: ugly, but until we rewrite the 1D case...
786        sed -i'' -e "s:^listecas=.*$:listecas=ARMCU/REF:" -e "s:cd \$local/bin ; ./compile -L \$L:#cd \$local/bin ; ./compile -L \$L:" \
787            -e "s:./compile -L \$llm:#./compile -L \$llm:" -e "s:ln -sf \$bin/\\\\\${main}\${suffixe}.e .:ln -sf ../../../../../$exe_name \\\\\${main}\${suffixe}.e:" -e "s:gzip listing:cp listing restartphy.nc ../../../../; exit 0:" \
788            run.sh
789        cp "../$exe_name" bin/
790        bench_cmd="./run.sh -rad $rad"  # suppress ferret commands that launch after bench is "over"
791      else
792        myget "3DBenchs/$bench.tar.gz"
793        mkdir "BENCH${grid_resolution}"
794        tar xf "$bench.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1
795
796        if [[ $cosp = "v1" || $cosp = "v2" ]]; then
797            cd "BENCH${grid_resolution}"
798            # copier les fichiers namelist input et output our COSP
799            cp ../DefLists/cosp*_input_nl.txt .
800            cp ../DefLists/cosp*_output_nl.txt .
801            # Activer la cles ok_cosp pour tourner avec COSP
802            sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp
803            \mv -f tmp config.def
804            cd ..
805        fi
806
807        if [[ -n "$benchphysiq" ]]; then
808            cd "BENCH${grid_resolution}"
809            if [[ -f "physiq.def_${benchphysiq}" ]]; then
810                cp "physiq.def_${benchphysiq}" benchphysiq.def
811                echo "using physiq.def_${benchphysiq}"
812            else
813                echo "using standard physiq.def"
814            fi
815            cd ..
816        else
817            echo "using standard physiq.def"
818        fi
819
820        if [[ $with_xios = 1 ]]; then
821            cd "BENCH${grid_resolution}"
822            cp ../DefLists/iodef.xml .
823            cp ../DefLists/context_lmdz.xml .
824            cp ../DefLists/field_def_lmdz.xml .
825            # A raffiner par la suite
826            echo "A FAIRE : Copier les *xml en fonction de l option cosp"
827            cp ../DefLists/field_def_cosp*.xml .
828            cp ../DefLists/file_def_hist*xml .
829            # adapt iodef.xml to use attached mode
830            sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' \
831                iodef.xml > tmp
832            \mv -f tmp iodef.xml
833
834            # and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE.
835            # except for histday
836            for histfile in file_def_hist*xml; do
837                if [[ "$histfile" = "file_def_histday_lmdz.xml" ]]; then
838                    sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' \
839                        "$histfile" > tmp
840                    \mv -f tmp "$histfile"
841                    sed -e 's@output_level="_AUTO_"@output_level="5"@' "$histfile" \
842                        > tmp
843                    \mv -f tmp "$histfile"
844                    sed -e 's@compression_level="2"@compression_level="0"@' \
845                        "$histfile" > tmp
846                    \mv -f tmp "$histfile"
847                else
848                    sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
849                        "$histfile" > tmp
850                    \mv -f tmp "$histfile"
851                fi
852            done
853            # and add option "ok_all_xml=y" in config.def
854            echo "### XIOS outputs" >> config.def
855            echo 'ok_all_xml=.true.' >> config.def
856
857            #activer les sorties pour Cosp
858            if [[ "$cosp" = "v1" ]]; then
859                sed -i'' -e 's@enabled=".FALSE."@enabled=".TRUE."@' \
860                         -e 's@output_level="_AUTO_"@output_level="5"@' \
861                         -e 's@compression_level="2"@compression_level="0"@' \
862                         file_def_histdayCOSP_lmdz.xml
863            fi
864            if [[ "$cosp" = "v2" ]]; then
865                sed -i'' -e 's@compression_level="2"@compression_level="0"@' file_def_histdayCOSPv2_lmdz.xml
866                for type_ in hf day mth; do
867                    file=file_def_hist${type_}COSP
868                    sed -i'' -e 's@src="./'${file}'_lmdz.xml"@src="./'${file}'v2_lmdz.xml"@' context_lmdz.xml
869                done
870                sed -i'' -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' field_def_lmdz.xml
871            fi
872
873            cd ..
874        fi
875
876        # Cas Bench avec ecrad
877        if [[ $rad = "ecrad" ]]; then
878            cd "BENCH${grid_resolution}"
879            cp  ../DefLists/namelist_ecrad .
880            cp -r ../libf/phylmd/ecrad/data .
881            cd ..
882        fi
883
884        # Adjusting bench physiq.def to radiative code chosen
885        cd "BENCH${grid_resolution}"
886        sed -e 's/iflag_rrtm=.*.$/iflag_rrtm='$iflag_rrtm'/' \
887            -e 's/NSW=.*.$/NSW='$NSW'/' physiq.def > tmpdef
888        \mv tmpdef physiq.def
889        cd ..
890
891        cp "$exe_name" "BENCH${grid_resolution}/gcm.e"
892        cd "BENCH${grid_resolution}"
893
894        if [[ ${parallel:0:3} = "mpi" ]]; then
895            # Lancement avec deux procs mpi et 2 openMP
896            echo "export OMP_STACKSIZE=800M" > bench.sh
897            if [[ "${parallel:4:3}" = "omp" ]]; then
898                echo "export OMP_NUM_THREADS=2" >> bench.sh
899            fi
900            if [[ $cosp = "v1" || $cosp = "v2" ]]; then
901                echo "ulimit -s 200000" >> bench.sh
902            else
903                echo "ulimit -s unlimited" >> bench.sh
904            fi
905            if which mpirun &> /dev/null; then
906                echo "mpirun -np 2 gcm.e &> listing" >> bench.sh
907            elif grep -q "Adastra" /etc/motd; then
908                local account
909                account=$(/usr/sbin/my_project.py -l 2>&1 | head -1 | cut -d " " -f 3- | cut -c 5-)
910                bench_cmd="srun --nodes=1 --ntasks=1 --cpus-per-task=2 --threads-per-core=2 --time=0:10:00 --constraint=GENOA --account=$account bash bench.sh"
911                echo "./gcm.e &> listing" >> bench.sh
912            else
913                echo "Error: No command found to run parallel bench"; exit 1
914            fi
915            if [[ $(hostname | cut -c -6) = "spirit" ]]; then  # ulimit unlimited segfaults on Spirit
916                sed -i'' "s/ulimit -s unlimited/ulimit -Ss 8000/" bench.sh
917            fi
918            # Add rebuild, using reb.sh if it is there
919            cat <<EOF >> bench.sh
920if [[ -f reb.sh ]]; then
921  ./reb.sh histday; ./reb.sh histmth; ./reb.sh histhf;
922  ./reb.sh histins; ./reb.sh stomate_history;
923  ./reb.sh sechiba_history; ./reb.sh sechiba_out_2
924fi
925EOF
926        else
927            echo "./gcm.e &> listing" > bench.sh
928        fi
929        chmod +x bench.sh
930        # Getting orchidee stuff
931        if [[ $veget = 'CMIP6' || $veget = "orch2.0" ]]; then  # TODO once we have a 2.2 bench, add it here (or in planned separate bench script)
932            echo 'myget 3DBenchs/BENCHCMIP6.tar.gz'
933            myget 3DBenchs/BENCHCMIP6.tar.gz
934            tar xvzf BENCHCMIP6.tar.gz
935            sed -e "s:VEGET=n:VEGET=y:" config.def > tmp
936            mv -f tmp config.def
937            if [[ $with_xios = 1 ]]; then
938                cp ../../ORCHIDEE/src_xml/context_orchidee.xml .
939                echo '<context id="orchidee" src="./context_orchidee.xml"/>' > add.tmp
940                cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml .
941                cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml .
942                cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml .
943                if [[ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ]]; then
944                       cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml .
945                       echo '<context id="orchidee" src="./context_input_orchidee.xml"/>' >> add.tmp
946                fi
947                sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp
948                mv tmp iodef.xml
949                sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' \
950                    file_def_orchidee.xml > tmp
951                \mv -f tmp file_def_orchidee.xml
952                sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
953                    file_def_orchidee.xml > tmp
954                \mv -f tmp file_def_orchidee.xml
955                sed -e 's@output_level="_AUTO_"@output_level="1"@' \
956                    file_def_orchidee.xml > tmp
957                \mv -f tmp file_def_orchidee.xml
958                sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' \
959                    file_def_orchidee.xml > tmp
960                \mv -f tmp file_def_orchidee.xml
961                sed -e 's@compression_level="4"@compression_level="0"@' \
962                    file_def_orchidee.xml > tmp
963                \mv -f tmp file_def_orchidee.xml
964                sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' \
965                    orchidee.def > tmp
966                \mv -f tmp orchidee.def
967            fi
968        fi
969
970        fi
971
972        if [[ -f ../arch.env ]]; then source ../arch.env; fi
973
974        echo "STARTING BENCH"
975        date
976        if (! $bench_cmd &> out.bench) || ! (tail -n 1 listing | grep "Everything is cool"); then
977            tail listing
978            echo "Bench FAILED, exiting"; exit 1
979        fi
980        date
981        tail listing
982    fi
983
984    # 1D case
985    if [[ $SCM = 1 ]]; then
986        cd "$MODEL"
987        myget 1D/1D.tar.gz
988        tar xf 1D.tar.gz
989        cd 1D
990        for e in "fcm" "env" "path"; do
991          cp "$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$e" "$MODEL/modipsl/modeles/LMDZ/arch/arch-local.$e"
992        done
993        if [[ $rad = "oldrad" ]]; then
994            sed -i'' -e 's/^rad=.*$/rad=oldrad/' run.sh
995            sed -i'' -e 's/^rad=.*$/rad=oldrad/' bin/compile
996        elif [[ $rad = ecrad ]] ; then
997                        sed -i'' -e 's/^rad=.*$/rad=ecrad/' run.sh
998                        sed -i'' -e 's/^rad=.*$/rad=ecrad/' bin/compile
999                    fi
1000        echo "Running 1D/run.sh, log in $(pwd)/run1d.log"
1001        ./run.sh &> "$(pwd)/run1d.log"
1002    fi
1003}
1004
1005function run_bench_icosa {
1006    local bench_cmd="./bench.sh"
1007
1008    if [[ $icolmdz = 1 ]]; then
1009      cd "$MODEL/modipsl/modeles/ICOSA_LMDZ"
1010      if [[ $bench = 1 ]]; then
1011        namebench=bench_icolmdz_nbp10_79
1012        myget "3DBenchs/$namebench.tar.gz"
1013        mkdir $namebench
1014        tar xf "$namebench.tar.gz" -C "$namebench" --strip-components=1
1015        cd $namebench
1016        # copy executables
1017        if [[ ! -x ../bin/icosa_lmdz.exe ]]; then
1018          echo "STOP in icosa_lmdz bench, icosa_lmdz.exe executable not present"; exit 1
1019        fi
1020        cp ../bin/icosa_lmdz.exe .
1021         if [[ ! -x ../../XIOS/bin/xios_server.exe ]]; then
1022          echo "STOP in icosa_lmdz bench, XIOS executable not present"; exit 1
1023        fi
1024        cp ../../XIOS/bin/xios_server.exe .
1025        echo "STARTING ICOSA_LMDZ BENCH"
1026        date
1027        if (! $bench_cmd &> out.bench) || ! ( grep "Time elapsed" listing); then
1028            tail listing
1029            echo "ICOSA_LMDZ bench FAILED, exiting"; exit 1
1030        fi
1031        date
1032        echo "ICOSA_LMDZ bench finished"
1033      fi
1034    fi
1035
1036}
1037# If sourced: returns, else run setup
1038if [[ ! "${BASH_SOURCE[0]}" = "$0" ]]; then return 0; fi
1039
1040echo "install_lmdz.sh DEBUT $(date)"
1041
1042set_default_params
1043read_cmdline_args "$@"
1044ensure_correct_option_combinations
1045download_model
1046init_arch
1047check_available_software
1048get_lmdz_version
1049get_orchidee_version
1050install_netcdf
1051install_IOIPSL
1052install_XIOS
1053compile_orchidee
1054compile_lmdz
1055run_bench
1056compile_icolmdzor
1057run_bench_icosa
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