Context Navigation

source: BOL/script_install/install_lmdz.sh @ 5389

Last change on this file since 5389 was 5387, checked in by abarral, 8 days ago
Fix error if MPI missing
Property svn:executable set to ``*
File size: 40.5 KB

Line
1	#!/bin/bash
2	set -eu # error on command failure, and on unset variables
3	export LC_ALL=C # standardize awk format
4
5	###########################################################################
6	# Author : Laurent Fairhead et Frédéric Hourdin
7	# Usage : install_lmdz.sh -help
8	#
9	# bash installation script of the LMDZ model on different computer types :
10	# Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS)
11	#
12	# The model is downloaded in the following directory tree
13	# $MODEL/modipsl/modeles/...
14	# using the "modipsl" infrastructure created by the "IPSL"
15	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
16	# activities.
17	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
18	# components.
19	#
20	# The sources of the models can be found in the "modeles" directory.
21	# In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of
22	# input-outputs using the NetCDF library).
23	#
24	# The script downloads various source files (including a version of NetCDF)
25	# and utilities, compiles the model, and runs a test simulation in a
26	# minimal configuration.
27	#
28	# Prerequisites : gfortran, bash or ksh, wget, gunzip, tar, ...
29	#
30	# Modif 18/11/2011
31	# changes for option real 8.
32	# We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
33	# but with -r4 for netcdf. Variable real must be set to
34	# r4 or r8 at the beginning of the script below.
35	#
36	###########################################################################
37
38	### Functions
39
40	function myget {
41	# Get a file from LMDZ repository, make it executable if .(ba)sh
42	local url=$1
43
44	local filename
45	filename=$(basename "$url")
46
47	wget --no-check-certificate -nv "http://lmdz.lmd.jussieu.fr/pub/$url"
48	if [[ $filename =~ .*\.(ba)?sh ]]; then chmod +x "$filename"; fi
49	}
50
51	function do_compile_sh {
52	local component=$1
53	local command=$2
54	local log
55
56	log="$(pwd)/$component.log"
57	printf "#!/bin/bash\n%s\n" "$command" > compile.sh
58	echo "Compiling $component using $command (log: $log) $(date)"
59	chmod +x ./compile.sh
60	if ! ./compile.sh &> "$log"; then
61	echo "STOP: $component compilation failed, exiting"; exit 1
62	fi
63	echo "Finished $component compilation $(date)"
64	}
65
66	function get_svn_branch {
67	local url=$1
68	local rev=$2
69	local res
70
71	res=$(svn log -v -q "$url" -r "$rev" -l 1 \| cut -d "/" -f -4)
72	if echo "$res" \| grep -q "/trunk/"; then
73	res=$(echo "$res" \| grep "/trunk/" \| head -1 \| cut -d "/" -f 2-3)
74	elif echo "$res" \| grep -q "/branches/"; then
75	res=$(echo "$res" \| grep "/branches/" \| head -1 \| cut -d "/" -f 2-4)
76	else
77	echo "Could not determine svn branch for $url, r=$rev"
78	fi
79	echo "$res"
80	}
81
82	function set_default_params {
83	# Valeur par défaut des parametres
84	svn_lmdz=""
85	version="20241018.trunk"
86
87	netcdf=1
88	bench=1
89	SCM=0
90	veget="none"
91	grid_resolution="32x32x39"
92	benchphysiq=""
93	compphysiq="lmd"
94	is_1D="n"
95	fortran_file="gcm"
96
97	parallel="none"
98	trusting="testing"
99	MODEL=""
100
101	with_xios=0
102	opt_makelmdz_xios=""
103
104	icolmdz=0
105	dynamico_commit="11001689"
106
107	rad="rrtm"
108
109	compile_with_fcm=1
110
111	cosp="none"
112	aerosols=0
113	strataer=0
114	inlandsis=0
115
116	make_j=8
117	clean_install=1
118	local="$(pwd)"
119
120	# Check if on a Mac /!\ Probably doesn't work anymore, to fix one day...
121	if [[ $(uname) = "Darwin" ]]; then
122	export MAKE="make"
123	fi
124
125	optim_flag="-prod"
126	arch="local"
127
128	arch="local-gfortran"
129	arch_dir=""
130
131	jobcmd=""
132	verbose=0
133	}
134
135	function read_cmdline_args {
136	while (($# > 0)); do
137	case $1 in
138	"-v") version=$2; shift; shift;;
139	"-r") svn_lmdz=$2; shift; shift;;
140	"-d") grid_resolution=$2; shift; shift;;
141	"-unstable") trusting="unstable"; shift;;
142	"-cosp") cosp=$2
143	case $cosp in
144	"none"\|"v1"\|"v2") cosp=$2; shift; shift;;
145	*) echo "Only none v1 v2 for cosp option"; exit 1
146	esac;;
147	"-nofcm") compile_with_fcm=0; echo "This option will be reactivated soon (promesse du 8dec2022)"; exit 1; shift;;
148	"-SCM") SCM=1; shift;;
149	"-rad") rad=$2
150	case $rad in
151	"oldrad"\|"rrtm"\|"ecrad") rad=$2; shift; shift;;
152	*) echo "Only oldrad rrtm ecrad for rad option"; exit 1
153	esac;;
154	"-parallel") parallel=$2
155	case $parallel in
156	"none"\|"mpi"\|"omp"\|"mpi_omp") parallel=$2; shift; shift;;
157	*) echo "Only none mpi omp mpi_omp for the parallel option"; exit 1
158	esac;;
159	"-bench") bench=$2; shift; shift;;
160	"-debug") optim_flag="-debug"; shift;;
161	"-name") MODEL=$2; shift; shift;;
162	"-netcdf") netcdf=$2; shift; shift;;
163	"-benchphysiq") benchphysiq=$2; shift; shift;;
164	"-compilephysiq") compphysiq=$2; shift; shift;;
165	"-xios") with_xios=1; shift;;
166	"-arch") arch=$2; shift; shift;;
167	"-arch_dir") arch_dir=$2; shift; shift;;
168	"-veget") veget=$2; shift; shift;;
169	"-spla") aerosols=1; shift;;
170	"-strataer") strataer=1; shift;;
171	"-inlandsis") inlandsis=1; shift;;
172	"-make_j") make_j=$2; shift; shift;;
173	"-jobcmd") jobcmd=$2; shift; shift;;
174	"-noclean") clean_install=0; shift;;
175	"-icolmdz") icolmdz=1; shift;;
176	"-verbose") verbose=1; shift;;
177	"-h" \| *) cat <<........fin
178	$0 [ -v version ] [ -r svn_release ]
179	[ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ]
180	[-name LOCAL_MODEL_NAME] [-rad RADIATIF]
181
182	-v "version" like 20150828.trunk, see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk (default <$version>)
183
184	-r "svn_release" : either the svn release number or "last" (default <$svn_lmdz>)
185
186	-parallel parallel support: mpi, omp, mpi_omp (mpi with openMP) or none (default: <$parallel>)
187
188	-d "grid resolution": should be among the available benchs if -bench 1 (valid values: 48x36x19, 48x36x39) (default : <$grid_resolution>)
189
190	-bench activating the bench or not (0/1) (default: <$bench>)
191
192	-unstable use unstable tar instead of testing
193
194	-name name of the folder to install to (default <$MODEL>)
195
196	-netcdf 0, 1 or PATH. 0: do not download NetCDF, look for it in standard locations (/usr); 1: download and compile NetCDF; PATH: full path to an existing installed NetCDF library (default: <$netcdf>)
197
198	-xios use (download and compile) the XIOS library (will compile the parallel NetCDF4-HDF5 library) (requires to also have -parallel mpi_omp)
199
200	-cosp to run with cospv1 or cospv2 [none/v1/v2] (default <$cosp>)
201
202	-rad radiative code: oldrad, rrtm or ecrad (default <$rad>)
203
204	-nofcm to compile without fcm
205
206	-SCM install 1D version automatically
207
208	-debug compile everything in debug mode
209
210	-benchphysiq to choose which physics.def package to use in the bench (default <$benchphysiq>)
211
212	-compilephysiq physics to compile the model with (default <$compphysiq>)
213
214	-veget surface/vegetation scheme treatment controlled by the single variable veget which can have the following values: none: bucket scheme (default); CMIP6 \| veget2.0: orchidee version used in CMIP exercise, rev 5661; veget2.2: orchidee branch 2.2, rev 8529 (bundled); number: orchidee version number [only orch>2.0] (default $veget)
215
216	-spla activate interactive aerosols
217
218	-inlandsis activate new snow scheme
219
220	-arch name of the arch to use (default <$arch>)
221
222	-arch_dir where to find the arch files (default <$arch_dir>)
223
224	-make_j number of processes to parallelize installations (default <$make_j>)
225
226	-jobcmd command prepended to fcm compile jobs, e.g. "srun" (default <$jobcmd>)
227
228	-noclean will only download necessary files (but no thorough check is made on the integrity of existing files), and will recompile everything (very quick if it's already been compiled before)
229
230	-icolmdz to compile the icolmdz executable as well as the lonlat one
231
232	-verbose to print every executed command
233
234	........fin
235	exit 0;;
236	esac
237	done
238
239	# Isotopes : Compile and run with isotopes if lmdz_phys="lmdiso" in main.sh
240	if [[ $compphysiq = "lmdiso" ]]; then isotopes=1; else isotopes=0; fi
241
242	# Option de compilation pour Cosp
243	case $cosp in
244	v1) opt_cosp="-cosp true";;
245	v2) opt_cosp="-cospv2 true";;
246	*) opt_cosp=""
247	esac
248
249	#Define veget-related suffix for gcm name
250	if [[ $veget = 'none' ]]; then
251	suff_orc=''
252	else
253	suff_orc='_orch'
254	fi
255
256
257	if [[ $parallel = "none" ]]; then
258	suff_para='_seq'
259	else
260	suff_para='_para_mem'
261	fi
262
263	if [[ $with_xios = 1 ]]; then opt_makelmdz_xios="-io xios"; fi
264
265	if [[ $aerosols = 1 ]]; then
266	opt_aer="-dust true"; suff_aer="_spla"
267	else
268	opt_aer=""; suff_aer=""
269	fi
270
271	if [[ $strataer = 1 ]]; then
272	opt_strataer="-strataer true"
273	else
274	opt_strataer=""
275	fi
276
277	if [[ $inlandsis = 1 ]]; then
278	opt_inlandsis="-inlandsis true"
279	else
280	opt_inlandsis=""
281	fi
282
283	if [[ $isotopes = 1 ]]; then
284	opt_isotopes="-isotopes true"; suff_iso="_iso"
285	else
286	opt_isotopes="" ; suff_iso=""
287	fi
288
289	# set default arch if parallel
290	if [[ $arch = "local-gfortran" && $parallel != "none" ]]; then
291	arch="local-gfortran-parallel"
292	echo "Switching default arch to $arch"
293	fi
294
295	# Name of the model's folder. The convention taken here is that models that requires different compilation sources should have a different names.
296	local xios_name=""
297	if [[ $with_xios = 1 ]]; then xios_name="XIOS"; fi
298	if [[ $MODEL = "" ]]; then MODEL="./LMDZ$version${svn_lmdz}OR$veget$xios_name"; fi
299
300	if [[ $arch_dir = "" ]]; then
301	arch_dir="$MODEL/modipsl/config/IPSLCM7/ARCH/";
302	elif ! readlink -fe "$arch_dir" >/dev/null; then
303	echo "STOP: no arch dir <$arch_dir>"; exit 1
304	fi
305
306	if ! (echo "$grid_resolution" \| grep -q "x"); then
307	is_1D="y"
308	fortran_file="lmdz1d"
309	fi
310
311	if [[ $verbose = 1 ]]; then set -vx; fi
312	}
313
314	function ensure_correct_option_combinations {
315	# Check on veget version
316	if [[ $veget != 'none' && $veget != "CMIP6" && $veget != "orch2.0" && $veget != "orch2.2" ]]; then
317	re='^[0-9]+$'
318	if ! [[ $veget =~ $re ]]; then
319	echo 'Valeur de l option veget non valable'; exit 1
320	fi
321	fi
322
323	## if compiling icolmdz, XIOS must be set
324	if [[ $icolmdz = 1 && $with_xios = 0 ]]; then
325	echo "Error, you must set -xios to compile the icolmdz executable"; exit 1
326	fi
327	## if also compiling XIOS, parallel must be mpi_omp
328	if [[ $with_xios = 1 && $parallel != "mpi_omp" ]]; then
329	echo "Error, you must set -parallel mpi_omp if you want XIOS"; exit 1
330	fi
331
332	if [[ $cosp = "v2" && $with_xios = 0 ]]; then
333	echo "Error, Cospv2 cannot run without Xios"; exit 1
334	fi
335
336	# STOP if trying to use both ORCHIDEE and Isotopes :
337	if [[ $isotopes = 1 && $veget != "none" ]]; then
338	echo "STOP: You cannot run LMDZ with ORCHIDEE and ISOtopes at the same time"; exit 1
339	fi
340
341	# STOP if trying to use both SPLA and Isotopes :
342	if [[ $isotopes = 1 && $aerosols = 1 ]]; then
343	echo "STOP: You cannot run LMDZ with Isotopes and aerosols=spla at the same time"; exit 1
344	fi
345
346	# (Temporary) STOP if trying to use Isotopes with XIOS :
347	if [[ $isotopes = 1 && $with_xios = 1 ]]; then
348	echo "STOP: Isotopes cannont yet be run with XIOS"; exit 1
349	fi
350
351	if [[ $aerosols = 1 && $rad != "rrtm" ]]; then
352	echo "STOP: For the time being, <aerosols=spla> requires <rad=rrtm>"; exit 1
353	fi
354	}
355
356	function check_available_software {
357	local required_soft=("wget" "tar" "gzip" "make" "gcc" "cmake" "m4" "c++")
358	echo "Checking if required software is available (${required_soft[*]})"
359	for logiciel in "${required_soft[@]}"; do
360	if [[ $(which "$logiciel") = "" ]]; then
361	echo "You must first install $logiciel on your system"; exit 1
362	fi
363	done
364	}
365
366	function download_modipsl_tar {
367	if [[ $clean_install = 1 ]]; then rm -rf "$MODEL"; fi
368
369	mkdir -p "$MODEL"
370	MODEL=$(readlink -e -f "$MODEL"); echo "MODEL: $MODEL" # absolute path
371	if [[ ! -d "$MODEL/modipsl" ]]; then
372	echo "Downloading a slightly modified version of modipsl+LMDZ"
373	cd "$MODEL"
374	getlog="$(pwd)/get.log"
375	echo "logfile : $getlog"
376	set +e; myget "src_archives/$trusting/modipsl.$version.tar.gz" &>> "$getlog"; set -e
377	if [[ ! -f "modipsl.$version.tar.gz" ]]; then
378	echo "STOP: failed to download modipsl. $getlog: <$(tail "$getlog")>"; exit 1
379	fi
380	echo "install_lmdz.sh wget_OK $(date)"
381
382	gunzip "modipsl.$version.tar.gz" &>> get.log
383	tar xf "modipsl.$version.tar" &>> get.log
384	rm "modipsl.$version.tar"
385	fi
386	}
387
388	function init_arch {
389	cd "$local"
390	set +e; arch_dir=$(readlink -f "$arch_dir"); set -e # full path. readlink must be called after the path is created
391
392	# Check where default fcm, path, env are located - by default in $arch_path, instead in $MODEL/modipsl/modeles/LMDZ/arch/
393	local i fcm_path path_path env_path
394	for i in "path" "fcm" "env"; do
395	local varname=${i}_path
396	if [[ -f $arch_dir/arch-$arch.$i ]]; then
397	declare $varname="$arch_dir/arch-$arch.$i"
398	else
399	declare $varname="$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$i"
400	if [[ ! -f ${!varname} ]]; then
401	echo "STOP: no ${!varname}"; exit 1
402	fi
403	fi
404	done
405	default_fcm_path=$fcm_path
406	default_path_path=$path_path
407	default_env_path=$env_path
408
409	# check compiler
410	compiler=$(< "$default_fcm_path" grep "%COMPILER" \| sed -e "s/%COMPILER\s*//")
411
412	# load env
413	# shellcheck disable=SC1090
414	if [[ -f $default_env_path ]]; then source "$default_env_path"; fi
415
416	local mpi_file # can't be done before as it depends on sourcing the env
417	set +e # install_lmdz must be able to run without mpi
418	mpi_file=$(readlink -e -f "$(which mpif90)")
419	path_mpi=$(dirname "$mpi_file")
420	root_mpi=$(dirname "$path_mpi")
421	set -e
422	}
423
424	function check_compiler {
425	# Must be called after init_arch to know which compiler to use
426	cat <<eod > tt.f90
427	print*,'coucou'
428	end
429	eod
430	$compiler tt.f90 \|\| a.out
431	./a.out >\| tt
432	if [[ $(< tt sed -e 's/ //g' ) != "coucou" ]]; then
433	echo "problem installing with compiler $compiler"; exit 1
434	fi
435	rm tt a.out tt.f90
436	}
437
438	function install_arch {
439	local component=$1
440
441	# Use same .env for all components (for module compatibility)
442	cp -f "$default_env_path" "$MODEL/modipsl/modeles/$component/arch" &> /dev/null \|\| true # allow failure if we're copying the file to itself
443
444	# Use local .path and .fcm if available, otherwise default
445	if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.path" ]]; then
446	cp -f "$default_path_path" "$MODEL/modipsl/modeles/$component/arch"
447
448	if [[ $component = "ORCHIDEE" ]]; then
449	if [[ $orcbranch = "/tags/ORCHIDEE_2_0/ORCHIDEE" ]]; then # 2.0 and before have a different fcm convention
450	sed -i'' -e "s/-I//" -e "s/-L//" "$MODEL/modipsl/modeles/ORCHIDEE/arch/arch-$arch.path" # /!\ we only replace first occurence on purpose
451	fi
452	fi
453	fi
454	if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.fcm" ]]; then
455	cp -f "$default_fcm_path" "$MODEL/modipsl/modeles/$component/arch"
456
457	if [[ $component = "XIOS" ]]; then
458	# Adapt for XIOS, which uses different naming conventions
459	sed -i'' -e "s/%COMPILER/%FCOMPILER/" -e "s/%LINK/%LINKER/" -e "s/-fdefault-real-8//" "$MODEL/modipsl/modeles/XIOS/arch/arch-$arch.fcm"
460	fi
461	fi
462	}
463
464	function install_netcdf {
465	echo "Installing Netcdf"
466	local ncdf_compiler="$compiler"
467
468	if [[ $netcdf = 0 ]]; then
469	ncdfdir=$(nf-config --prefix)
470	else
471	cd "$MODEL"
472
473	# Convert non-basic compiler
474	case $compiler in
475	mpif90) ncdf_compiler=$($compiler --version \| head -n 1 \| cut -d " " -f -1)
476	esac
477
478	case $ncdf_compiler in
479	gfortran \| GNU) ncdf_compiler="gfortran"; opt1="-compiler gnu"; opt2="-CC gcc -FC gfortran -CXX g++";;
480	*) echo "unexpected compiler $ncdf_compiler for netcdf"; exit 1
481	esac
482
483	case $with_xios in
484	0) script_install_netcdf="install_netcdf4_hdf5_seq.bash"
485	ncdfdir="netcdf4_hdf5_seq"
486	opt_="$opt1";;
487	1) script_install_netcdf="install_netcdf4_hdf5.bash"
488	ncdfdir="netcdf4_hdf5"
489	opt_="$opt2 -MPI $root_mpi";;
490	*) echo "with_xios=$with_xios, should be 0 or 1"; exit 1
491	esac
492	if [[ $netcdf = 1 ]]; then
493	ncdfdir="$MODEL/$ncdfdir"
494	else
495	mkdir -p "$netcdf"; ncdfdir="$netcdf/$ncdfdir"
496	fi
497
498	echo "Repertoire netcdf $ncdfdir"
499	if [[ ! -d $ncdfdir ]]; then
500	netcdflog=$(pwd)/netcdf.log
501	echo "----------------------------------------------------------"
502	echo "Compiling the Netcdf library"
503	echo "----------------------------------------------------------"
504	echo "log file : $netcdflog"
505	myget script_install/$script_install_netcdf &>> "$netcdflog"
506	chmod u=rwx $script_install_netcdf
507	# shellcheck disable=SC2086
508	./$script_install_netcdf -prefix "$ncdfdir" $opt_ &>> "$netcdflog"
509	fi
510
511	# Add to path
512	export PATH="$ncdfdir/bin:$PATH"
513	echo "Bin PATH" $PATH
514
515	#----------------------------------------------------------------------------
516	# LF rajout d'une verrue, pour une raison non encore expliquee,
517	# la librairie est parfois rangée dans lib64 et non dans lib
518	# par certains compilateurs
519	if [[ ! -e lib && -d lib64 ]]; then ln -s lib64 lib; fi
520	#----------------------------------------------------------------------------
521
522	echo "install_lmdz.sh netcdf_OK $(date)"
523	fi
524
525	cat >test_netcdf90.f90 <<EOF
526	use netcdf
527	print *, "NetCDF library version: ", nf90_inq_libvers()
528	end
529	EOF
530
531	if $ncdf_compiler -I"$ncdfdir"/include test_netcdf90.f90 -L"$ncdfdir"/lib -lnetcdff -lnetcdf -Wl,-rpath="$ncdfdir"/lib && ./a.out; then
532	rm test_netcdf90.f90 a.out
533	else
534	cat <<EOF
535	Failed test program using NetCDF-Fortran. You can:
536	- check that you have NetCDF-Fortran installed in your system
537	- or specify an installation directory with option -netcdf of install_lmdz.sh
538	- or download and compile NetCDF-Fortran with option -netcdf 1 of install_lmdz.sh
539	EOF
540	exit 1
541	fi
542
543	# Compile NetCDF95
544	cd "$MODEL/modipsl/modeles/LMD"*
545	echo "Installing NetCDF95"
546	cd "$MODEL"
547	if [[ ! -d "NetCDF95-0.3" ]]; then
548	myget src_archives/netcdf/NetCDF95-0.3.tar.gz
549	tar -xf NetCDF95-0.3.tar.gz
550	rm NetCDF95-0.3.tar.gz
551	cd NetCDF95-0.3
552	mkdir -p build && cd build
553	netCDF_INCLUDE_DIR=$(nc-config --includedir) netCDF_LIBRARY=$(nc-config --libdir) cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="$ncdfdir" -DCMAKE_INSTALL_PREFIX="$MODEL/modipsl"
554	make install
555	fi
556	}
557
558	function install_IOIPSL {
559	install_arch "IOIPSL"
560
561	cd "$MODEL/modipsl/modeles/IOIPSL"
562	ioipsllog="$(pwd)/ioipsl.log"
563	echo "Compiling IOIPSL, the interface library with Netcdf $(date) (log: $ioipsllog)"
564	# in case ksh is not installed on the pc
565	if [[ ! -x /bin/ksh ]]; then
566	sed -i'' -e 's/ksh/bash/' ins_m_prec
567	fi
568	do_compile_sh "IOIPSL" "$jobcmd ./makeioipsl_fcm -j $make_j -arch $arch $optim_flag"
569
570	# Link to modipsl/bin
571	cp -f bin/* ../../bin
572
573	echo "IOIPSL compiled $(date)"
574	}
575
576	function install_XIOS {
577	if [[ $with_xios = 1 ]]; then
578	cd "$MODEL/modipsl/modeles"
579	xioslog="$(pwd)/XIOS/xios.log"
580	echo "##########################################################"
581	echo "Compiling XIOS (log $xioslog) $(date)"
582	echo "##########################################################"
583
584	# Download XIOS
585	local xios_http="http://forge.ipsl.fr/ioserver/svn/XIOS2/branches/xios-2.6"
586	local xios_rev="2568"
587
588	cd "$MODEL/modipsl/modeles"
589	set +e; svn co -r $xios_rev $xios_http XIOS; set -e
590
591	cd XIOS
592
593	install_arch "XIOS"
594	do_compile_sh "XIOS" "$jobcmd ./make_xios --job $make_j --arch $arch"
595	fi
596	}
597
598	function get_orchidee_version { # Set / Check ORCHIDEE version
599	echo "Checking Orchidee source version"
600	local fetch_rev=""
601	orcbranch=""
602	case $veget in
603	"none") fcm_veget_version="false";;
604	"orch2.0" \| "CMIP6") fcm_veget_version=orchidee2.0; fetch_rev=7906;; # in previous tar we used 6592 but with some modifications to xios_orchidee.f90, which got integrated in 7906
605	"orch2.2") fcm_veget_version=orchidee2.1; orcbranch="/branches/ORCHIDEE_2_2/ORCHIDEE" ;; # the bundled version
606	*) fetch_rev=$veget; fcm_veget_version=orchidee2.1;; # /!\ arbitary rev only works for orch>=2.1
607	# /!\ Note: for orch>=4, we should be using fcm_vegt_version="orchideetrunk". Below copied comment by Adriana in LMDZ_Setup docs:
608	# Avec orchidee2.1, on va compiler LMDZ avec le cle cpp ORCHIDEE_NOLIC. On ne va donc pas prendre en compte les avancements fait dans le trunk qui permet que les fractions lic soitent traité par ORCHIDEE. Ca marche très bien sans cela puisque dans tout façon c'est en cours de développement et ce n'est pas activé par default. En fait on devrait compiler le trunk avec -v orchideetrunk mais avec landice_opt>2, ce qui ne change rien par rapport à orchidee2.1
609	#Si on voudrait activer landice_opt=2 , il faut compiler avec -v orchideetrunk.
610
611	esac
612
613	if [[ -n $fetch_rev ]]; then
614	echo "IF YOU INSTALL ORCHIDEE THE VERY FIRST TIME, ASK for PASSWORD at orchidee-help@listes.ipsl.fr"
615	local curr_rev
616	curr_rev=$(svn info "$MODEL/modipsl/modeles/ORCHIDEE" \| grep Revision: \| cut -d ":" -f 2 \| cut -c 2-)
617	orcbranch=$(svn log -v -q svn://forge.ipsl.fr/orchidee/ -r "$fetch_rev" \| grep ORCHIDEE \| head -1 \| sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' \| awk '{print $2}')
618	if [[ $fetch_rev != "$curr_rev" ]]; then
619	echo "Fetching orch $fetch_rev from the repository (curr: $curr_rev)"
620	echo "branch is $orcbranch"
621	if [[ $fetch_rev -lt 4465 ]]; then echo 'ORCHIDEE version must be >=4465, exiting'; exit 1; fi
622	cd "$MODEL/modipsl/modeles"
623	rm -rf ORCHIDEE
624	svn co -r "$fetch_rev" "svn://forge.ipsl.fr/orchidee/$orcbranch"
625	cd - > /dev/null
626	fi
627	fi
628
629	# Check parallel LMDZ+ORCH
630	if [[ (! $veget = "none") && $parallel = "none" && ($used_lmdz_rev -lt 4894) ]]; then
631	echo "LMDZ revision must be >=4894 for orchidee without parallel support. Upgrade lmdz or use -parallel mpi_omp."; exit 1
632	fi
633	}
634
635	function compile_orchidee {
636	install_arch "ORCHIDEE"
637
638	if [[ $veget != "none" ]]; then
639	cd "$MODEL/modipsl/modeles/ORCHIDEE"
640
641	local xios_orchid
642	if [[ $with_xios = 1 ]]; then
643	xios_orchid="-xios";
644	else
645	xios_orchid="-noxios"
646	fi
647
648	if [[ $parallel != "none" && ! -d src_parallel ]]; then
649	echo "STOP: Orchidee version too old for parallel support"; exit 1
650	fi
651	do_compile_sh "ORCHIDEE" "$jobcmd ./makeorchidee_fcm -j $make_j $xios_orchid $optim_flag -parallel $parallel -arch $arch"
652	fi
653	}
654
655	function get_lmdz_version {
656	echo "Checking LMDZ source version"
657	LMDZPATH=$(readlink -e -f "$MODEL/modipsl/modeles/LMD"*)
658	cd "$LMDZPATH"
659
660	if [[ -n $svn_lmdz ]]; then
661	local curr_rev
662	curr_rev=$(svn info "$MODEL/modipsl/modeles/LMD"* \| grep Revision: \| cut -d ":" -f 2 \| cut -c 2-)
663	if [[ $svn_lmdz != "$curr_rev" ]]; then
664	local lmdzbranch
665	echo "Fetching LMDZ $svn_lmdz from the repository"
666	lmdzbranch=$(get_svn_branch "https://svn.lmd.jussieu.fr/LMDZ" "$svn_lmdz")
667	echo "branch is $lmdzbranch"
668	cd "$MODEL/modipsl/modeles"
669	rm -rf LMD*
670	svn co -r "$svn_lmdz" "https://svn.lmd.jussieu.fr/LMDZ/$lmdzbranch" LMDZ
671	cd - > /dev/null
672	fi
673	used_lmdz_rev=$svn_lmdz
674	else # get svn from info
675	set +e; used_lmdz_rev=$(svn info \| grep "Last Changed Rev" \| cut -c 19-); set -e
676	if [[ -z $used_lmdz_rev ]]; then # svn info failed
677	used_lmdz_rev=$(grep 'Revision: [0-9]' "$MODEL"/Read*.md \| awk ' { print $2 } ' 2>/dev/null)
678	if [[ -z $used_lmdz_rev ]]; then echo "Could not determine lmdz version. This is likely an issue with the .tar itself, please report to LMDZ team."; exit 1; fi
679	fi
680	fi
681	}
682
683	function compile_lmdz {
684	install_arch "LMDZ"
685	cd "$LMDZPATH"
686
687	if [[ $used_lmdz_rev -le 4185 ]]; then
688	exe_name="bin/${fortran_file}_${grid_resolution}_phy${compphysiq}_${suff_para}${suff_orc}${suff_aer}${suff_iso}.e"
689	else
690	exe_name="bin/${fortran_file}_${grid_resolution}_phy${compphysiq}_${rad}${suff_para}${suff_orc}${suff_aer}${suff_iso}.e"
691	fi
692
693	local opt_rad
694	case $rad in
695	oldrad) iflag_rrtm=0; NSW=2; opt_rad="";;
696	rrtm) iflag_rrtm=1; NSW=6
697	if [[ $used_lmdz_rev -le 4185 ]]; then
698	opt_rad="-rrtm true"
699	else
700	opt_rad="-rad rrtm"
701	fi;;
702	ecrad) iflag_rrtm=2; NSW=6; opt_rad="-rad ecrad";;
703	*) echo "Only oldrad rrtm ecrad for rad option"; exit 1
704	esac
705	if [[ $used_lmdz_rev -le 4185 && $rad = "ecrad" ]]; then
706	echo "ecrad only available for LMDZ rev starting with 4186 "; exit 1
707	fi
708
709	# Compile
710	local makelmdz="makelmdz_fcm $optim_flag -arch $arch -j $make_j"
711	local para_compile_opt="-mem -parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi
712	do_compile_sh "LMDZ" "$jobcmd ./$makelmdz $opt_rad $opt_cosp $opt_makelmdz_xios $opt_aer $opt_inlandsis $opt_strataer $opt_isotopes -p $compphysiq -d ${grid_resolution} -v $fcm_veget_version $para_compile_opt $fortran_file"
713
714	# Check executable
715	if [[ ! -f $exe_name ]]; then
716	echo "STOP: Compilation failed, can't find the executable"; exit 1
717	else
718	echo "Compilation successful, the executable is $exe_name $(date)"
719	fi
720	}
721
722	function get_dynamico_icosa_version {
723	if [[ $icolmdz = 1 ]]; then
724	echo "Checking DYNAMICO source version"
725	cd "$MODEL/modipsl/modeles"
726	if [[ ! -d DYNAMICO ]]; then
727	git clone https://gitlab.in2p3.fr/ipsl/projets/dynamico/dynamico.git DYNAMICO
728	fi
729	cd DYNAMICO
730	git checkout master && git checkout $dynamico_commit
731	cd - > /dev/null
732
733	echo "Checking ICOSA_LMDZ source version"
734	if [[ ! -d ICOSA_LMDZ ]]; then
735	svn checkout http://svn.lmd.jussieu.fr/LMDZ/ICOSA_LMDZ
736	fi
737	cd ICOSA_LMDZ
738	svn up -r 5320
739	fi
740	}
741
742	function compile_icolmdzor {
743	if [[ $icolmdz = 1 ]]; then
744	install_arch "ICOSA_LMDZ"
745	local para_compile_opt="-parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi
746
747	# LMDZ physics package library already available in LMDZ/config/lib directory
748
749	# Compile DYNAMICO
750	cd "$MODEL/modipsl/modeles/DYNAMICO"
751
752	# Need to get rather than install the archs as DYNAMICO uses FCMv2 that does not understand the makefile syntax ($shell)
753	cd arch
754	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.env"
755	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.fcm"
756	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.path"
757	cd ..
758
759	do_compile_sh "DYNAMICO" "$jobcmd ./make_icosa $optim_flag -arch $arch -job $make_j $para_compile_opt -external_ioipsl -with_xios"
760
761	# Compile icosa_lmdz
762	echo "Bin PATH before icosalmdz" "$PATH"
763	cd "$MODEL/modipsl/modeles/ICOSA_LMDZ"
764	do_compile_sh "ICOSA_LMDZ" "$jobcmd ./make_icosa_lmdz -arch $arch -j $make_j -nodeps -p lmd $optim_flag $para_compile_opt -with_orchidee"
765	echo "# Running environment for icosa_lmdz" > icosalmdz.env
766	echo "# " >> icosalmdz.env
767	if [[ -v LD_LIBRARY_PATH ]]; then
768	echo "export LD_LIBRARY_PATH=$ncdfdir/lib:$LD_LIBRARY_PATH" >> icosalmdz.env
769	else
770	echo "export LD_LIBRARY_PATH=$ncdfdir/lib" >> icosalmdz.env
771	fi
772	fi
773	}
774
775	function run_bench {
776	local bench_cmd="./bench.sh"
777
778	cd "$MODEL/modipsl/modeles/LMDZ"*
779
780	if [[ $bench = "tuto" ]]; then
781	myget "Training/tutorial.tar"; tar xf tutorial.tar; cd TUTORIAL
782	./init.sh
783	elif [[ $bench = 1 ]]; then
784	rm -rf "BENCH${grid_resolution}"
785	local bench=bench_lmdz_${grid_resolution}
786	if [[ $compphysiq = "lmdiso" ]]; then bench=bench_lmdz_iso_${grid_resolution}; fi
787
788	if [[ $is_1D = "y" ]] ; then # 1D
789	myget "1D/1D.tar.gz"
790	mkdir -p "BENCH${grid_resolution}"
791	tar xf "1D.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1
792	cd "BENCH${grid_resolution}"
793	# Below: ugly, but until we rewrite the 1D case...
794	sed -i'' -e "s:^listecas=.*$:listecas=ARMCU/REF:" -e "s:cd \$local/bin ; ./compile -L \$L:#cd \$local/bin ; ./compile -L \$L:" \
795	-e "s:./compile -L \$llm:#./compile -L \$llm:" -e "s:ln -sf \$bin/\\\\\${main}\${suffixe}.e .:ln -sf ../../../../../$exe_name \\\\\${main}\${suffixe}.e:" -e "s:gzip listing:cp listing restartphy.nc ../../../../; exit 0:" \
796	run.sh
797	cp "../$exe_name" bin/
798	bench_cmd="./run.sh -rad $rad" # suppress ferret commands that launch after bench is "over"
799	else
800	myget "3DBenchs/$bench.tar.gz"
801	mkdir "BENCH${grid_resolution}"
802	tar xf "$bench.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1
803
804	if [[ $cosp = "v1" \|\| $cosp = "v2" ]]; then
805	cd "BENCH${grid_resolution}"
806	# copier les fichiers namelist input et output our COSP
807	cp ../DefLists/cosp*_input_nl.txt .
808	cp ../DefLists/cosp*_output_nl.txt .
809	# Activer la cles ok_cosp pour tourner avec COSP
810	sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp
811	\mv -f tmp config.def
812	cd ..
813	fi
814
815	if [[ -n "$benchphysiq" ]]; then
816	cd "BENCH${grid_resolution}"
817	if [[ -f "physiq.def_${benchphysiq}" ]]; then
818	cp "physiq.def_${benchphysiq}" benchphysiq.def
819	echo "using physiq.def_${benchphysiq}"
820	else
821	echo "using standard physiq.def"
822	fi
823	cd ..
824	else
825	echo "using standard physiq.def"
826	fi
827
828	if [[ $with_xios = 1 ]]; then
829	cd "BENCH${grid_resolution}"
830	cp ../DefLists/iodef.xml .
831	cp ../DefLists/context_lmdz.xml .
832	cp ../DefLists/field_def_lmdz.xml .
833	# A raffiner par la suite
834	echo "A FAIRE : Copier les *xml en fonction de l option cosp"
835	cp ../DefLists/field_def_cosp*.xml .
836	cp ../DefLists/file_def_hist*xml .
837	# adapt iodef.xml to use attached mode
838	sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' \
839	iodef.xml > tmp
840	\mv -f tmp iodef.xml
841
842	# and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE.
843	# except for histday
844	for histfile in file_def_hist*xml; do
845	if [[ "$histfile" = "file_def_histday_lmdz.xml" ]]; then
846	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' \
847	"$histfile" > tmp
848	\mv -f tmp "$histfile"
849	sed -e 's@output_level="_AUTO_"@output_level="5"@' "$histfile" \
850	> tmp
851	\mv -f tmp "$histfile"
852	sed -e 's@compression_level="2"@compression_level="0"@' \
853	"$histfile" > tmp
854	\mv -f tmp "$histfile"
855	else
856	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
857	"$histfile" > tmp
858	\mv -f tmp "$histfile"
859	fi
860	done
861	# and add option "ok_all_xml=y" in config.def
862	echo "### XIOS outputs" >> config.def
863	echo 'ok_all_xml=.true.' >> config.def
864
865	#activer les sorties pour Cosp
866	if [[ "$cosp" = "v1" ]]; then
867	sed -i'' -e 's@enabled=".FALSE."@enabled=".TRUE."@' \
868	-e 's@output_level="_AUTO_"@output_level="5"@' \
869	-e 's@compression_level="2"@compression_level="0"@' \
870	file_def_histdayCOSP_lmdz.xml
871	fi
872	if [[ "$cosp" = "v2" ]]; then
873	sed -i'' -e 's@compression_level="2"@compression_level="0"@' file_def_histdayCOSPv2_lmdz.xml
874	for type_ in hf day mth; do
875	file=file_def_hist${type_}COSP
876	sed -i'' -e 's@src="./'${file}'_lmdz.xml"@src="./'${file}'v2_lmdz.xml"@' context_lmdz.xml
877	done
878	sed -i'' -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' field_def_lmdz.xml
879	fi
880
881	cd ..
882	fi
883
884	# Cas Bench avec ecrad
885	if [[ $rad = "ecrad" ]]; then
886	cd "BENCH${grid_resolution}"
887	cp ../DefLists/namelist_ecrad .
888	cp -r ../libf/phylmd/ecrad/data .
889	cd ..
890	fi
891
892	# Adjusting bench physiq.def to radiative code chosen
893	cd "BENCH${grid_resolution}"
894	sed -e 's/iflag_rrtm=.*.$/iflag_rrtm='$iflag_rrtm'/' \
895	-e 's/NSW=.*.$/NSW='$NSW'/' physiq.def > tmpdef
896	\mv tmpdef physiq.def
897	cd ..
898
899	cp "$exe_name" "BENCH${grid_resolution}/gcm.e"
900	cd "BENCH${grid_resolution}"
901
902	if [[ ${parallel:0:3} = "mpi" ]]; then
903	# Lancement avec deux procs mpi et 2 openMP
904	echo "export OMP_STACKSIZE=800M" > bench.sh
905	if [[ "${parallel:4:3}" = "omp" ]]; then
906	echo "export OMP_NUM_THREADS=2" >> bench.sh
907	fi
908	if [[ $cosp = "v1" \|\| $cosp = "v2" ]]; then
909	echo "ulimit -s 200000" >> bench.sh
910	else
911	echo "ulimit -s unlimited" >> bench.sh
912	fi
913	if which mpirun &> /dev/null; then
914	echo "mpirun -np 2 gcm.e &> listing" >> bench.sh
915	elif grep -q "Adastra" /etc/motd; then
916	local account
917	account=$(/usr/sbin/my_project.py -l 2>&1 \| head -1 \| cut -d " " -f 3- \| cut -c 5-)
918	bench_cmd="srun --nodes=1 --ntasks=1 --cpus-per-task=2 --threads-per-core=2 --time=0:10:00 --constraint=GENOA --account=$account bash bench.sh"
919	echo "./gcm.e &> listing" >> bench.sh
920	else
921	echo "Error: No command found to run parallel bench"; exit 1
922	fi
923	if [[ $(hostname \| cut -c -6) = "spirit" ]]; then # ulimit unlimited segfaults on Spirit
924	sed -i'' "s/ulimit -s unlimited/ulimit -Ss 8000/" bench.sh
925	fi
926	# Add rebuild, using reb.sh if it is there
927	cat <<EOF >> bench.sh
928	if [[ -f reb.sh ]]; then
929	./reb.sh histday; ./reb.sh histmth; ./reb.sh histhf;
930	./reb.sh histins; ./reb.sh stomate_history;
931	./reb.sh sechiba_history; ./reb.sh sechiba_out_2
932	fi
933	EOF
934	else
935	echo "./gcm.e &> listing" > bench.sh
936	fi
937	chmod +x bench.sh
938	# Getting orchidee stuff
939	if [[ $veget = 'CMIP6' \|\| $veget = "orch2.0" ]]; then # TODO once we have a 2.2 bench, add it here (or in planned separate bench script)
940	echo 'myget 3DBenchs/BENCHCMIP6.tar.gz'
941	myget 3DBenchs/BENCHCMIP6.tar.gz
942	tar xvzf BENCHCMIP6.tar.gz
943	sed -e "s:VEGET=n:VEGET=y:" config.def > tmp
944	mv -f tmp config.def
945	if [[ $with_xios = 1 ]]; then
946	cp ../../ORCHIDEE/src_xml/context_orchidee.xml .
947	echo '<context id="orchidee" src="./context_orchidee.xml"/>' > add.tmp
948	cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml .
949	cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml .
950	cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml .
951	if [[ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ]]; then
952	cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml .
953	echo '<context id="orchidee" src="./context_input_orchidee.xml"/>' >> add.tmp
954	fi
955	sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp
956	mv tmp iodef.xml
957	sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' \
958	file_def_orchidee.xml > tmp
959	\mv -f tmp file_def_orchidee.xml
960	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
961	file_def_orchidee.xml > tmp
962	\mv -f tmp file_def_orchidee.xml
963	sed -e 's@output_level="_AUTO_"@output_level="1"@' \
964	file_def_orchidee.xml > tmp
965	\mv -f tmp file_def_orchidee.xml
966	sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' \
967	file_def_orchidee.xml > tmp
968	\mv -f tmp file_def_orchidee.xml
969	sed -e 's@compression_level="4"@compression_level="0"@' \
970	file_def_orchidee.xml > tmp
971	\mv -f tmp file_def_orchidee.xml
972	sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' \
973	orchidee.def > tmp
974	\mv -f tmp orchidee.def
975	fi
976	fi
977
978	fi
979
980	if [[ -f ../arch.env ]]; then source ../arch.env; fi
981
982	echo "STARTING BENCH"
983	date
984	if (! $bench_cmd &> out.bench) \|\| ! (tail -n 1 listing \| grep "Everything is cool"); then
985	tail listing
986	echo "Bench FAILED, exiting"; exit 1
987	fi
988	date
989	tail listing
990	fi
991
992	# 1D case
993	if [[ $SCM = 1 ]]; then
994	cd "$MODEL"
995	myget 1D/1D.tar.gz
996	tar xf 1D.tar.gz
997	cd 1D
998	for e in "fcm" "env" "path"; do
999	cp "$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$e" "$MODEL/modipsl/modeles/LMDZ/arch/arch-local.$e"
1000	done
1001	if [[ $rad = "oldrad" ]]; then
1002	sed -i'' -e 's/^rad=.*$/rad=oldrad/' run.sh
1003	sed -i'' -e 's/^rad=.*$/rad=oldrad/' bin/compile
1004	elif [[ $rad = ecrad ]] ; then
1005	sed -i'' -e 's/^rad=.*$/rad=ecrad/' run.sh
1006	sed -i'' -e 's/^rad=.*$/rad=ecrad/' bin/compile
1007	fi
1008	echo "Running 1D/run.sh, log in $(pwd)/run1d.log"
1009	./run.sh &> "$(pwd)/run1d.log"
1010	fi
1011	}
1012
1013	function run_bench_icosa {
1014	local bench_cmd="./bench.sh"
1015
1016	if [[ $icolmdz = 1 ]]; then
1017	cd "$MODEL/modipsl/modeles/ICOSA_LMDZ"
1018	if [[ $bench = 1 ]]; then
1019	namebench="bench_icolmdz_nbp10_79"
1020	rm -rf $namebench
1021	myget "3DBenchs/$namebench.tar.gz"
1022	mkdir -p $namebench
1023	tar xf "$namebench.tar.gz" -C "$namebench" --strip-components=1
1024	cd $namebench
1025	# copy executables
1026	if [[ ! -x ../bin/icosa_lmdz.exe ]]; then
1027	echo "STOP in icosa_lmdz bench, icosa_lmdz.exe executable not present"; exit 1
1028	fi
1029	cp ../bin/icosa_lmdz.exe .
1030	if [[ ! -x ../../XIOS/bin/xios_server.exe ]]; then
1031	echo "STOP in icosa_lmdz bench, XIOS executable not present"; exit 1
1032	fi
1033	cp ../../XIOS/bin/xios_server.exe .
1034	echo "STARTING ICOSA_LMDZ BENCH"
1035	date
1036	if (! $bench_cmd &> out.bench) \|\| ! ( grep "Time elapsed" listing); then
1037	tail listing
1038	echo "ICOSA_LMDZ bench FAILED, exiting"; exit 1
1039	fi
1040	date
1041	echo "ICOSA_LMDZ bench finished"
1042	fi
1043	fi
1044
1045	}
1046	# If sourced: returns, else run setup
1047	if [[ ! "${BASH_SOURCE[0]}" = "$0" ]]; then return 0; fi
1048
1049	echo "install_lmdz.sh DEBUT $(date)"
1050
1051	function wrapper_run_all() {
1052	set_default_params
1053	read_cmdline_args "$@"
1054	ensure_correct_option_combinations
1055	download_modipsl_tar
1056	get_lmdz_version
1057	get_dynamico_icosa_version
1058	get_orchidee_version
1059	init_arch
1060	check_available_software
1061	check_compiler
1062	install_netcdf
1063	install_IOIPSL
1064	install_XIOS
1065	compile_orchidee
1066	compile_lmdz
1067	compile_icolmdzor
1068	run_bench
1069	run_bench_icosa
1070	}
1071
1072	set +e; (set -e && wrapper_run_all "$@"); err_status=$?; set -e # workaround to make sure set -e is propagated to wrapper_run_all & check the result
1073	if (($err_status)); then
1074	echo "EXIT (error)"
1075	echo "install_lmdz.sh failed"
1076	set +u
1077	if [[ $verbose != 1 ]]; then
1078	echo "Consider using the \`-verbose\` flag to see precisely where it stopped."
1079	fi
1080	fi

Note: See TracBrowser for help on using the repository browser.

Download in other formats: