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source: BOL/script_install/install_lmdz.sh @ 5386

Last change on this file since 5386 was 5386, checked in by abarral, 7 days ago
Add -verbose option Add wrapper to display generic error message if we exit because of set -e
Property svn:executable set to ``*
File size: 40.4 KB

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1	#!/bin/bash
2	set -eu # error on command failure, and on unset variables
3	export LC_ALL=C # standardize awk format
4
5	###########################################################################
6	# Author : Laurent Fairhead et Frédéric Hourdin
7	# Usage : install_lmdz.sh -help
8	#
9	# bash installation script of the LMDZ model on different computer types :
10	# Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS)
11	#
12	# The model is downloaded in the following directory tree
13	# $MODEL/modipsl/modeles/...
14	# using the "modipsl" infrastructure created by the "IPSL"
15	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
16	# activities.
17	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
18	# components.
19	#
20	# The sources of the models can be found in the "modeles" directory.
21	# In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of
22	# input-outputs using the NetCDF library).
23	#
24	# The script downloads various source files (including a version of NetCDF)
25	# and utilities, compiles the model, and runs a test simulation in a
26	# minimal configuration.
27	#
28	# Prerequisites : gfortran, bash or ksh, wget, gunzip, tar, ...
29	#
30	# Modif 18/11/2011
31	# changes for option real 8.
32	# We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
33	# but with -r4 for netcdf. Variable real must be set to
34	# r4 or r8 at the beginning of the script below.
35	#
36	###########################################################################
37
38	### Functions
39
40	function myget {
41	# Get a file from LMDZ repository, make it executable if .(ba)sh
42	local url=$1
43
44	local filename
45	filename=$(basename "$url")
46
47	wget --no-check-certificate -nv "http://lmdz.lmd.jussieu.fr/pub/$url"
48	if [[ $filename =~ .*\.(ba)?sh ]]; then chmod +x "$filename"; fi
49	}
50
51	function do_compile_sh {
52	local component=$1
53	local command=$2
54	local log
55
56	log="$(pwd)/$component.log"
57	printf "#!/bin/bash\n%s\n" "$command" > compile.sh
58	echo "Compiling $component using $command (log: $log) $(date)"
59	chmod +x ./compile.sh
60	if ! ./compile.sh &> "$log"; then
61	echo "STOP: $component compilation failed, exiting"; exit 1
62	fi
63	echo "Finished $component compilation $(date)"
64	}
65
66	function get_svn_branch {
67	local url=$1
68	local rev=$2
69	local res
70
71	res=$(svn log -v -q "$url" -r "$rev" -l 1 \| cut -d "/" -f -4)
72	if echo "$res" \| grep -q "/trunk/"; then
73	res=$(echo "$res" \| grep "/trunk/" \| head -1 \| cut -d "/" -f 2-3)
74	elif echo "$res" \| grep -q "/branches/"; then
75	res=$(echo "$res" \| grep "/branches/" \| head -1 \| cut -d "/" -f 2-4)
76	else
77	echo "Could not determine svn branch for $url, r=$rev"
78	fi
79	echo "$res"
80	}
81
82	function set_default_params {
83	# Valeur par défaut des parametres
84	svn_lmdz=""
85	version="20241018.trunk"
86
87	netcdf=1
88	bench=1
89	SCM=0
90	veget="none"
91	grid_resolution="32x32x39"
92	benchphysiq=""
93	compphysiq="lmd"
94	is_1D="n"
95	fortran_file="gcm"
96
97	parallel="none"
98	trusting="testing"
99	MODEL=""
100
101	with_xios=0
102	opt_makelmdz_xios=""
103
104	icolmdz=0
105	dynamico_commit="11001689"
106
107	rad="rrtm"
108
109	compile_with_fcm=1
110
111	cosp="none"
112	aerosols=0
113	strataer=0
114	inlandsis=0
115
116	make_j=8
117	clean_install=1
118	local="$(pwd)"
119
120	# Check if on a Mac /!\ Probably doesn't work anymore, to fix one day...
121	if [[ $(uname) = "Darwin" ]]; then
122	export MAKE="make"
123	fi
124
125	optim_flag="-prod"
126	arch="local"
127
128	arch="local-gfortran"
129	arch_dir=""
130
131	jobcmd=""
132	verbose=0
133	}
134
135	function read_cmdline_args {
136	while (($# > 0)); do
137	case $1 in
138	"-v") version=$2; shift; shift;;
139	"-r") svn_lmdz=$2; shift; shift;;
140	"-d") grid_resolution=$2; shift; shift;;
141	"-unstable") trusting="unstable"; shift;;
142	"-cosp") cosp=$2
143	case $cosp in
144	"none"\|"v1"\|"v2") cosp=$2; shift; shift;;
145	*) echo "Only none v1 v2 for cosp option"; exit 1
146	esac;;
147	"-nofcm") compile_with_fcm=0; echo "This option will be reactivated soon (promesse du 8dec2022)"; exit 1; shift;;
148	"-SCM") SCM=1; shift;;
149	"-rad") rad=$2
150	case $rad in
151	"oldrad"\|"rrtm"\|"ecrad") rad=$2; shift; shift;;
152	*) echo "Only oldrad rrtm ecrad for rad option"; exit 1
153	esac;;
154	"-parallel") parallel=$2
155	case $parallel in
156	"none"\|"mpi"\|"omp"\|"mpi_omp") parallel=$2; shift; shift;;
157	*) echo "Only none mpi omp mpi_omp for the parallel option"; exit 1
158	esac;;
159	"-bench") bench=$2; shift; shift;;
160	"-debug") optim_flag="-debug"; shift;;
161	"-name") MODEL=$2; shift; shift;;
162	"-netcdf") netcdf=$2; shift; shift;;
163	"-benchphysiq") benchphysiq=$2; shift; shift;;
164	"-compilephysiq") compphysiq=$2; shift; shift;;
165	"-xios") with_xios=1; shift;;
166	"-arch") arch=$2; shift; shift;;
167	"-arch_dir") arch_dir=$2; shift; shift;;
168	"-veget") veget=$2; shift; shift;;
169	"-spla") aerosols=1; shift;;
170	"-strataer") strataer=1; shift;;
171	"-inlandsis") inlandsis=1; shift;;
172	"-make_j") make_j=$2; shift; shift;;
173	"-jobcmd") jobcmd=$2; shift; shift;;
174	"-noclean") clean_install=0; shift;;
175	"-icolmdz") icolmdz=1; shift;;
176	"-verbose") verbose=1; shift;;
177	"-h" \| *) cat <<........fin
178	$0 [ -v version ] [ -r svn_release ]
179	[ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ]
180	[-name LOCAL_MODEL_NAME] [-rad RADIATIF]
181
182	-v "version" like 20150828.trunk, see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk (default <$version>)
183
184	-r "svn_release" : either the svn release number or "last" (default <$svn_lmdz>)
185
186	-parallel parallel support: mpi, omp, mpi_omp (mpi with openMP) or none (default: <$parallel>)
187
188	-d "grid resolution": should be among the available benchs if -bench 1 (valid values: 48x36x19, 48x36x39) (default : <$grid_resolution>)
189
190	-bench activating the bench or not (0/1) (default: <$bench>)
191
192	-unstable use unstable tar instead of testing
193
194	-name name of the folder to install to (default <$MODEL>)
195
196	-netcdf 0, 1 or PATH. 0: do not download NetCDF, look for it in standard locations (/usr); 1: download and compile NetCDF; PATH: full path to an existing installed NetCDF library (default: <$netcdf>)
197
198	-xios use (download and compile) the XIOS library (will compile the parallel NetCDF4-HDF5 library) (requires to also have -parallel mpi_omp)
199
200	-cosp to run with cospv1 or cospv2 [none/v1/v2] (default <$cosp>)
201
202	-rad radiative code: oldrad, rrtm or ecrad (default <$rad>)
203
204	-nofcm to compile without fcm
205
206	-SCM install 1D version automatically
207
208	-debug compile everything in debug mode
209
210	-benchphysiq to choose which physics.def package to use in the bench (default <$benchphysiq>)
211
212	-compilephysiq physics to compile the model with (default <$compphysiq>)
213
214	-veget surface/vegetation scheme treatment controlled by the single variable veget which can have the following values: none: bucket scheme (default); CMIP6 \| veget2.0: orchidee version used in CMIP exercise, rev 5661; veget2.2: orchidee branch 2.2, rev 8529 (bundled); number: orchidee version number [only orch>2.0] (default $veget)
215
216	-spla activate interactive aerosols
217
218	-inlandsis activate new snow scheme
219
220	-arch name of the arch to use (default <$arch>)
221
222	-arch_dir where to find the arch files (default <$arch_dir>)
223
224	-make_j number of processes to parallelize installations (default <$make_j>)
225
226	-jobcmd command prepended to fcm compile jobs, e.g. "srun" (default <$jobcmd>)
227
228	-noclean will only download necessary files (but no thorough check is made on the integrity of existing files), and will recompile everything (very quick if it's already been compiled before)
229
230	-icolmdz to compile the icolmdz executable as well as the lonlat one
231
232	-verbose to print every executed command
233
234	........fin
235	exit 0;;
236	esac
237	done
238
239	# Isotopes : Compile and run with isotopes if lmdz_phys="lmdiso" in main.sh
240	if [[ $compphysiq = "lmdiso" ]]; then isotopes=1; else isotopes=0; fi
241
242	# Option de compilation pour Cosp
243	case $cosp in
244	v1) opt_cosp="-cosp true";;
245	v2) opt_cosp="-cospv2 true";;
246	*) opt_cosp=""
247	esac
248
249	#Define veget-related suffix for gcm name
250	if [[ $veget = 'none' ]]; then
251	suff_orc=''
252	else
253	suff_orc='_orch'
254	fi
255
256
257	if [[ $parallel = "none" ]]; then
258	suff_para='_seq'
259	else
260	suff_para='_para_mem'
261	fi
262
263	if [[ $with_xios = 1 ]]; then opt_makelmdz_xios="-io xios"; fi
264
265	if [[ $aerosols = 1 ]]; then
266	opt_aer="-dust true"; suff_aer="_spla"
267	else
268	opt_aer=""; suff_aer=""
269	fi
270
271	if [[ $strataer = 1 ]]; then
272	opt_strataer="-strataer true"
273	else
274	opt_strataer=""
275	fi
276
277	if [[ $inlandsis = 1 ]]; then
278	opt_inlandsis="-inlandsis true"
279	else
280	opt_inlandsis=""
281	fi
282
283	if [[ $isotopes = 1 ]]; then
284	opt_isotopes="-isotopes true"; suff_iso="_iso"
285	else
286	opt_isotopes="" ; suff_iso=""
287	fi
288
289	# set default arch if parallel
290	if [[ $arch = "local-gfortran" && $parallel != "none" ]]; then
291	arch="local-gfortran-parallel"
292	echo "Switching default arch to $arch"
293	fi
294
295	# Name of the model's folder. The convention taken here is that models that requires different compilation sources should have a different names.
296	local xios_name=""
297	if [[ $with_xios = 1 ]]; then xios_name="XIOS"; fi
298	if [[ $MODEL = "" ]]; then MODEL="./LMDZ$version${svn_lmdz}OR$veget$xios_name"; fi
299
300	if [[ $arch_dir = "" ]]; then
301	arch_dir="$MODEL/modipsl/config/IPSLCM7/ARCH/";
302	elif ! readlink -fe "$arch_dir" >/dev/null; then
303	echo "STOP: no arch dir <$arch_dir>"; exit 1
304	fi
305
306	if ! (echo "$grid_resolution" \| grep -q "x"); then
307	is_1D="y"
308	fortran_file="lmdz1d"
309	fi
310
311	if [[ $verbose = 1 ]]; then set -vx; fi
312	}
313
314	function ensure_correct_option_combinations {
315	# Check on veget version
316	if [[ $veget != 'none' && $veget != "CMIP6" && $veget != "orch2.0" && $veget != "orch2.2" ]]; then
317	re='^[0-9]+$'
318	if ! [[ $veget =~ $re ]]; then
319	echo 'Valeur de l option veget non valable'; exit 1
320	fi
321	fi
322
323	## if compiling icolmdz, XIOS must be set
324	if [[ $icolmdz = 1 && $with_xios = 0 ]]; then
325	echo "Error, you must set -xios to compile the icolmdz executable"; exit 1
326	fi
327	## if also compiling XIOS, parallel must be mpi_omp
328	if [[ $with_xios = 1 && $parallel != "mpi_omp" ]]; then
329	echo "Error, you must set -parallel mpi_omp if you want XIOS"; exit 1
330	fi
331
332	if [[ $cosp = "v2" && $with_xios = 0 ]]; then
333	echo "Error, Cospv2 cannot run without Xios"; exit 1
334	fi
335
336	# STOP if trying to use both ORCHIDEE and Isotopes :
337	if [[ $isotopes = 1 && $veget != "none" ]]; then
338	echo "STOP: You cannot run LMDZ with ORCHIDEE and ISOtopes at the same time"; exit 1
339	fi
340
341	# STOP if trying to use both SPLA and Isotopes :
342	if [[ $isotopes = 1 && $aerosols = 1 ]]; then
343	echo "STOP: You cannot run LMDZ with Isotopes and aerosols=spla at the same time"; exit 1
344	fi
345
346	# (Temporary) STOP if trying to use Isotopes with XIOS :
347	if [[ $isotopes = 1 && $with_xios = 1 ]]; then
348	echo "STOP: Isotopes cannont yet be run with XIOS"; exit 1
349	fi
350
351	if [[ $aerosols = 1 && $rad != "rrtm" ]]; then
352	echo "STOP: For the time being, <aerosols=spla> requires <rad=rrtm>"; exit 1
353	fi
354	}
355
356	function check_available_software {
357	local required_soft=("wget" "tar" "gzip" "make" "gcc" "cmake" "m4" "c++")
358	echo "Checking if required software is available (${required_soft[*]})"
359	for logiciel in "${required_soft[@]}"; do
360	if [[ $(which "$logiciel") = "" ]]; then
361	echo "You must first install $logiciel on your system"; exit 1
362	fi
363	done
364	}
365
366	function download_modipsl_tar {
367	if [[ $clean_install = 1 ]]; then rm -rf "$MODEL"; fi
368
369	mkdir -p "$MODEL"
370	MODEL=$(readlink -e -f "$MODEL"); echo "MODEL: $MODEL" # absolute path
371	if [[ ! -d "$MODEL/modipsl" ]]; then
372	echo "Downloading a slightly modified version of modipsl+LMDZ"
373	cd "$MODEL"
374	getlog="$(pwd)/get.log"
375	echo "logfile : $getlog"
376	set +e; myget "src_archives/$trusting/modipsl.$version.tar.gz" &>> "$getlog"; set -e
377	if [[ ! -f "modipsl.$version.tar.gz" ]]; then
378	echo "STOP: failed to download modipsl. $getlog: <$(tail "$getlog")>"; exit 1
379	fi
380	echo "install_lmdz.sh wget_OK $(date)"
381
382	gunzip "modipsl.$version.tar.gz" &>> get.log
383	tar xf "modipsl.$version.tar" &>> get.log
384	rm "modipsl.$version.tar"
385	fi
386	}
387
388	function init_arch {
389	cd "$local"
390	set +e; arch_dir=$(readlink -f "$arch_dir"); set -e # full path. readlink must be called after the path is created
391
392	# Check where default fcm, path, env are located - by default in $arch_path, instead in $MODEL/modipsl/modeles/LMDZ/arch/
393	local i fcm_path path_path env_path
394	for i in "path" "fcm" "env"; do
395	local varname=${i}_path
396	if [[ -f $arch_dir/arch-$arch.$i ]]; then
397	declare $varname="$arch_dir/arch-$arch.$i"
398	else
399	declare $varname="$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$i"
400	if [[ ! -f ${!varname} ]]; then
401	echo "STOP: no ${!varname}"; exit 1
402	fi
403	fi
404	done
405	default_fcm_path=$fcm_path
406	default_path_path=$path_path
407	default_env_path=$env_path
408
409	# check compiler
410	compiler=$(< "$default_fcm_path" grep "%COMPILER" \| sed -e "s/%COMPILER\s*//")
411
412	# load env
413	# shellcheck disable=SC1090
414	if [[ -f $default_env_path ]]; then source "$default_env_path"; fi
415
416	local mpi_file # can't be done before as it depends on sourcing the env
417	mpi_file=$(readlink -e -f "$(which mpif90)")
418	path_mpi=$(dirname "$mpi_file")
419	root_mpi=$(dirname "$path_mpi")
420	}
421
422	function check_compiler {
423	# Must be called after init_arch to know which compiler to use
424	cat <<eod > tt.f90
425	print*,'coucou'
426	end
427	eod
428	$compiler tt.f90 \|\| a.out
429	./a.out >\| tt
430	if [[ $(< tt sed -e 's/ //g' ) != "coucou" ]]; then
431	echo "problem installing with compiler $compiler"; exit 1
432	fi
433	rm tt a.out tt.f90
434	}
435
436	function install_arch {
437	local component=$1
438
439	# Use same .env for all components (for module compatibility)
440	cp -f "$default_env_path" "$MODEL/modipsl/modeles/$component/arch" &> /dev/null \|\| true # allow failure if we're copying the file to itself
441
442	# Use local .path and .fcm if available, otherwise default
443	if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.path" ]]; then
444	cp -f "$default_path_path" "$MODEL/modipsl/modeles/$component/arch"
445
446	if [[ $component = "ORCHIDEE" ]]; then
447	if [[ $orcbranch = "/tags/ORCHIDEE_2_0/ORCHIDEE" ]]; then # 2.0 and before have a different fcm convention
448	sed -i'' -e "s/-I//" -e "s/-L//" "$MODEL/modipsl/modeles/ORCHIDEE/arch/arch-$arch.path" # /!\ we only replace first occurence on purpose
449	fi
450	fi
451	fi
452	if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.fcm" ]]; then
453	cp -f "$default_fcm_path" "$MODEL/modipsl/modeles/$component/arch"
454
455	if [[ $component = "XIOS" ]]; then
456	# Adapt for XIOS, which uses different naming conventions
457	sed -i'' -e "s/%COMPILER/%FCOMPILER/" -e "s/%LINK/%LINKER/" -e "s/-fdefault-real-8//" "$MODEL/modipsl/modeles/XIOS/arch/arch-$arch.fcm"
458	fi
459	fi
460	}
461
462	function install_netcdf {
463	echo "Installing Netcdf"
464	local ncdf_compiler="$compiler"
465
466	if [[ $netcdf = 0 ]]; then
467	ncdfdir=$(nf-config --prefix)
468	else
469	cd "$MODEL"
470
471	# Convert non-basic compiler
472	case $compiler in
473	mpif90) ncdf_compiler=$($compiler --version \| head -n 1 \| cut -d " " -f -1)
474	esac
475
476	case $ncdf_compiler in
477	gfortran \| GNU) ncdf_compiler="gfortran"; opt1="-compiler gnu"; opt2="-CC gcc -FC gfortran -CXX g++";;
478	*) echo "unexpected compiler $ncdf_compiler for netcdf"; exit 1
479	esac
480
481	case $with_xios in
482	0) script_install_netcdf="install_netcdf4_hdf5_seq.bash"
483	ncdfdir="netcdf4_hdf5_seq"
484	opt_="$opt1";;
485	1) script_install_netcdf="install_netcdf4_hdf5.bash"
486	ncdfdir="netcdf4_hdf5"
487	opt_="$opt2 -MPI $root_mpi";;
488	*) echo "with_xios=$with_xios, should be 0 or 1"; exit 1
489	esac
490	if [[ $netcdf = 1 ]]; then
491	ncdfdir="$MODEL/$ncdfdir"
492	else
493	mkdir -p "$netcdf"; ncdfdir="$netcdf/$ncdfdir"
494	fi
495
496	echo "Repertoire netcdf $ncdfdir"
497	if [[ ! -d $ncdfdir ]]; then
498	netcdflog=$(pwd)/netcdf.log
499	echo "----------------------------------------------------------"
500	echo "Compiling the Netcdf library"
501	echo "----------------------------------------------------------"
502	echo "log file : $netcdflog"
503	myget script_install/$script_install_netcdf &>> "$netcdflog"
504	chmod u=rwx $script_install_netcdf
505	# shellcheck disable=SC2086
506	./$script_install_netcdf -prefix "$ncdfdir" $opt_ &>> "$netcdflog"
507	fi
508
509	# Add to path
510	export PATH="$ncdfdir/bin:$PATH"
511	echo "Bin PATH" $PATH
512
513	#----------------------------------------------------------------------------
514	# LF rajout d'une verrue, pour une raison non encore expliquee,
515	# la librairie est parfois rangée dans lib64 et non dans lib
516	# par certains compilateurs
517	if [[ ! -e lib && -d lib64 ]]; then ln -s lib64 lib; fi
518	#----------------------------------------------------------------------------
519
520	echo "install_lmdz.sh netcdf_OK $(date)"
521	fi
522
523	cat >test_netcdf90.f90 <<EOF
524	use netcdf
525	print *, "NetCDF library version: ", nf90_inq_libvers()
526	end
527	EOF
528
529	if $ncdf_compiler -I"$ncdfdir"/include test_netcdf90.f90 -L"$ncdfdir"/lib -lnetcdff -lnetcdf -Wl,-rpath="$ncdfdir"/lib && ./a.out; then
530	rm test_netcdf90.f90 a.out
531	else
532	cat <<EOF
533	Failed test program using NetCDF-Fortran. You can:
534	- check that you have NetCDF-Fortran installed in your system
535	- or specify an installation directory with option -netcdf of install_lmdz.sh
536	- or download and compile NetCDF-Fortran with option -netcdf 1 of install_lmdz.sh
537	EOF
538	exit 1
539	fi
540
541	# Compile NetCDF95
542	cd "$MODEL/modipsl/modeles/LMD"*
543	echo "Installing NetCDF95"
544	cd "$MODEL"
545	if [[ ! -d "NetCDF95-0.3" ]]; then
546	myget src_archives/netcdf/NetCDF95-0.3.tar.gz
547	tar -xf NetCDF95-0.3.tar.gz
548	rm NetCDF95-0.3.tar.gz
549	cd NetCDF95-0.3
550	mkdir -p build && cd build
551	netCDF_INCLUDE_DIR=$(nc-config --includedir) netCDF_LIBRARY=$(nc-config --libdir) cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="$ncdfdir" -DCMAKE_INSTALL_PREFIX="$MODEL/modipsl"
552	make install
553	fi
554	}
555
556	function install_IOIPSL {
557	install_arch "IOIPSL"
558
559	cd "$MODEL/modipsl/modeles/IOIPSL"
560	ioipsllog="$(pwd)/ioipsl.log"
561	echo "Compiling IOIPSL, the interface library with Netcdf $(date) (log: $ioipsllog)"
562	# in case ksh is not installed on the pc
563	if [[ ! -x /bin/ksh ]]; then
564	sed -i'' -e 's/ksh/bash/' ins_m_prec
565	fi
566	do_compile_sh "IOIPSL" "$jobcmd ./makeioipsl_fcm -j $make_j -arch $arch $optim_flag"
567
568	# Link to modipsl/bin
569	cp -f bin/* ../../bin
570
571	echo "IOIPSL compiled $(date)"
572	}
573
574	function install_XIOS {
575	if [[ $with_xios = 1 ]]; then
576	cd "$MODEL/modipsl/modeles"
577	xioslog="$(pwd)/XIOS/xios.log"
578	echo "##########################################################"
579	echo "Compiling XIOS (log $xioslog) $(date)"
580	echo "##########################################################"
581
582	# Download XIOS
583	local xios_http="http://forge.ipsl.fr/ioserver/svn/XIOS2/branches/xios-2.6"
584	local xios_rev="2568"
585
586	cd "$MODEL/modipsl/modeles"
587	set +e; svn co -r $xios_rev $xios_http XIOS; set -e
588
589	cd XIOS
590
591	install_arch "XIOS"
592	do_compile_sh "XIOS" "$jobcmd ./make_xios --job $make_j --arch $arch"
593	fi
594	}
595
596	function get_orchidee_version { # Set / Check ORCHIDEE version
597	echo "Checking Orchidee source version"
598	local fetch_rev=""
599	orcbranch=""
600	case $veget in
601	"none") fcm_veget_version="false";;
602	"orch2.0" \| "CMIP6") fcm_veget_version=orchidee2.0; fetch_rev=7906;; # in previous tar we used 6592 but with some modifications to xios_orchidee.f90, which got integrated in 7906
603	"orch2.2") fcm_veget_version=orchidee2.1; orcbranch="/branches/ORCHIDEE_2_2/ORCHIDEE" ;; # the bundled version
604	*) fetch_rev=$veget; fcm_veget_version=orchidee2.1;; # /!\ arbitary rev only works for orch>=2.1
605	# /!\ Note: for orch>=4, we should be using fcm_vegt_version="orchideetrunk". Below copied comment by Adriana in LMDZ_Setup docs:
606	# Avec orchidee2.1, on va compiler LMDZ avec le cle cpp ORCHIDEE_NOLIC. On ne va donc pas prendre en compte les avancements fait dans le trunk qui permet que les fractions lic soitent traité par ORCHIDEE. Ca marche très bien sans cela puisque dans tout façon c'est en cours de développement et ce n'est pas activé par default. En fait on devrait compiler le trunk avec -v orchideetrunk mais avec landice_opt>2, ce qui ne change rien par rapport à orchidee2.1
607	#Si on voudrait activer landice_opt=2 , il faut compiler avec -v orchideetrunk.
608
609	esac
610
611	if [[ -n $fetch_rev ]]; then
612	echo "IF YOU INSTALL ORCHIDEE THE VERY FIRST TIME, ASK for PASSWORD at orchidee-help@listes.ipsl.fr"
613	local curr_rev
614	curr_rev=$(svn info "$MODEL/modipsl/modeles/ORCHIDEE" \| grep Revision: \| cut -d ":" -f 2 \| cut -c 2-)
615	orcbranch=$(svn log -v -q svn://forge.ipsl.fr/orchidee/ -r "$fetch_rev" \| grep ORCHIDEE \| head -1 \| sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' \| awk '{print $2}')
616	if [[ $fetch_rev != "$curr_rev" ]]; then
617	echo "Fetching orch $fetch_rev from the repository (curr: $curr_rev)"
618	echo "branch is $orcbranch"
619	if [[ $fetch_rev -lt 4465 ]]; then echo 'ORCHIDEE version must be >=4465, exiting'; exit 1; fi
620	cd "$MODEL/modipsl/modeles"
621	rm -rf ORCHIDEE
622	svn co -r "$fetch_rev" "svn://forge.ipsl.fr/orchidee/$orcbranch"
623	cd - > /dev/null
624	fi
625	fi
626
627	# Check parallel LMDZ+ORCH
628	if [[ (! $veget = "none") && $parallel = "none" && ($used_lmdz_rev -lt 4894) ]]; then
629	echo "LMDZ revision must be >=4894 for orchidee without parallel support. Upgrade lmdz or use -parallel mpi_omp."; exit 1
630	fi
631	}
632
633	function compile_orchidee {
634	install_arch "ORCHIDEE"
635
636	if [[ $veget != "none" ]]; then
637	cd "$MODEL/modipsl/modeles/ORCHIDEE"
638
639	local xios_orchid
640	if [[ $with_xios = 1 ]]; then
641	xios_orchid="-xios";
642	else
643	xios_orchid="-noxios"
644	fi
645
646	if [[ $parallel != "none" && ! -d src_parallel ]]; then
647	echo "STOP: Orchidee version too old for parallel support"; exit 1
648	fi
649	do_compile_sh "ORCHIDEE" "$jobcmd ./makeorchidee_fcm -j $make_j $xios_orchid $optim_flag -parallel $parallel -arch $arch"
650	fi
651	}
652
653	function get_lmdz_version {
654	echo "Checking LMDZ source version"
655	LMDZPATH=$(readlink -e -f "$MODEL/modipsl/modeles/LMD"*)
656	cd "$LMDZPATH"
657
658	if [[ -n $svn_lmdz ]]; then
659	local curr_rev
660	curr_rev=$(svn info "$MODEL/modipsl/modeles/LMD"* \| grep Revision: \| cut -d ":" -f 2 \| cut -c 2-)
661	if [[ $svn_lmdz != "$curr_rev" ]]; then
662	local lmdzbranch
663	echo "Fetching LMDZ $svn_lmdz from the repository"
664	lmdzbranch=$(get_svn_branch "https://svn.lmd.jussieu.fr/LMDZ" "$svn_lmdz")
665	echo "branch is $lmdzbranch"
666	cd "$MODEL/modipsl/modeles"
667	rm -rf LMD*
668	svn co -r "$svn_lmdz" "https://svn.lmd.jussieu.fr/LMDZ/$lmdzbranch" LMDZ
669	cd - > /dev/null
670	fi
671	used_lmdz_rev=$svn_lmdz
672	else # get svn from info
673	set +e; used_lmdz_rev=$(svn info \| grep "Last Changed Rev" \| cut -c 19-); set -e
674	if [[ -z $used_lmdz_rev ]]; then # svn info failed
675	used_lmdz_rev=$(grep 'Revision: [0-9]' "$MODEL"/Read*.md \| awk ' { print $2 } ' 2>/dev/null)
676	if [[ -z $used_lmdz_rev ]]; then echo "Could not determine lmdz version. This is likely an issue with the .tar itself, please report to LMDZ team."; exit 1; fi
677	fi
678	fi
679	}
680
681	function compile_lmdz {
682	install_arch "LMDZ"
683	cd "$LMDZPATH"
684
685	if [[ $used_lmdz_rev -le 4185 ]]; then
686	exe_name="bin/${fortran_file}_${grid_resolution}_phy${compphysiq}_${suff_para}${suff_orc}${suff_aer}${suff_iso}.e"
687	else
688	exe_name="bin/${fortran_file}_${grid_resolution}_phy${compphysiq}_${rad}${suff_para}${suff_orc}${suff_aer}${suff_iso}.e"
689	fi
690
691	local opt_rad
692	case $rad in
693	oldrad) iflag_rrtm=0; NSW=2; opt_rad="";;
694	rrtm) iflag_rrtm=1; NSW=6
695	if [[ $used_lmdz_rev -le 4185 ]]; then
696	opt_rad="-rrtm true"
697	else
698	opt_rad="-rad rrtm"
699	fi;;
700	ecrad) iflag_rrtm=2; NSW=6; opt_rad="-rad ecrad";;
701	*) echo "Only oldrad rrtm ecrad for rad option"; exit 1
702	esac
703	if [[ $used_lmdz_rev -le 4185 && $rad = "ecrad" ]]; then
704	echo "ecrad only available for LMDZ rev starting with 4186 "; exit 1
705	fi
706
707	# Compile
708	local makelmdz="makelmdz_fcm $optim_flag -arch $arch -j $make_j"
709	local para_compile_opt="-mem -parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi
710	do_compile_sh "LMDZ" "$jobcmd ./$makelmdz $opt_rad $opt_cosp $opt_makelmdz_xios $opt_aer $opt_inlandsis $opt_strataer $opt_isotopes -p $compphysiq -d ${grid_resolution} -v $fcm_veget_version $para_compile_opt $fortran_file"
711
712	# Check executable
713	if [[ ! -f $exe_name ]]; then
714	echo "STOP: Compilation failed, can't find the executable"; exit 1
715	else
716	echo "Compilation successful, the executable is $exe_name $(date)"
717	fi
718	}
719
720	function get_dynamico_icosa_version {
721	if [[ $icolmdz = 1 ]]; then
722	echo "Checking DYNAMICO source version"
723	cd "$MODEL/modipsl/modeles"
724	if [[ ! -d DYNAMICO ]]; then
725	git clone https://gitlab.in2p3.fr/ipsl/projets/dynamico/dynamico.git DYNAMICO
726	fi
727	cd DYNAMICO
728	git checkout master && git checkout $dynamico_commit
729	cd - > /dev/null
730
731	echo "Checking ICOSA_LMDZ source version"
732	if [[ ! -d ICOSA_LMDZ ]]; then
733	svn checkout http://svn.lmd.jussieu.fr/LMDZ/ICOSA_LMDZ
734	fi
735	cd ICOSA_LMDZ
736	svn up -r 5320
737	fi
738	}
739
740	function compile_icolmdzor {
741	if [[ $icolmdz = 1 ]]; then
742	install_arch "ICOSA_LMDZ"
743	local para_compile_opt="-parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi
744
745	# LMDZ physics package library already available in LMDZ/config/lib directory
746
747	# Compile DYNAMICO
748	cd "$MODEL/modipsl/modeles/DYNAMICO"
749
750	# Need to get rather than install the archs as DYNAMICO uses FCMv2 that does not understand the makefile syntax ($shell)
751	cd arch
752	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.env"
753	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.fcm"
754	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.path"
755	cd ..
756
757	do_compile_sh "DYNAMICO" "$jobcmd ./make_icosa $optim_flag -arch $arch -job $make_j $para_compile_opt -external_ioipsl -with_xios"
758
759	# Compile icosa_lmdz
760	echo "Bin PATH before icosalmdz" "$PATH"
761	cd "$MODEL/modipsl/modeles/ICOSA_LMDZ"
762	do_compile_sh "ICOSA_LMDZ" "$jobcmd ./make_icosa_lmdz -arch $arch -j $make_j -nodeps -p lmd $optim_flag $para_compile_opt -with_orchidee"
763	echo "# Running environment for icosa_lmdz" > icosalmdz.env
764	echo "# " >> icosalmdz.env
765	if [[ -v LD_LIBRARY_PATH ]]; then
766	echo "export LD_LIBRARY_PATH=$ncdfdir/lib:$LD_LIBRARY_PATH" >> icosalmdz.env
767	else
768	echo "export LD_LIBRARY_PATH=$ncdfdir/lib" >> icosalmdz.env
769	fi
770	fi
771	}
772
773	function run_bench {
774	local bench_cmd="./bench.sh"
775
776	cd "$MODEL/modipsl/modeles/LMDZ"*
777
778	if [[ $bench = "tuto" ]]; then
779	myget "Training/tutorial.tar"; tar xf tutorial.tar; cd TUTORIAL
780	./init.sh
781	elif [[ $bench = 1 ]]; then
782	rm -rf "BENCH${grid_resolution}"
783	local bench=bench_lmdz_${grid_resolution}
784	if [[ $compphysiq = "lmdiso" ]]; then bench=bench_lmdz_iso_${grid_resolution}; fi
785
786	if [[ $is_1D = "y" ]] ; then # 1D
787	myget "1D/1D.tar.gz"
788	mkdir -p "BENCH${grid_resolution}"
789	tar xf "1D.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1
790	cd "BENCH${grid_resolution}"
791	# Below: ugly, but until we rewrite the 1D case...
792	sed -i'' -e "s:^listecas=.*$:listecas=ARMCU/REF:" -e "s:cd \$local/bin ; ./compile -L \$L:#cd \$local/bin ; ./compile -L \$L:" \
793	-e "s:./compile -L \$llm:#./compile -L \$llm:" -e "s:ln -sf \$bin/\\\\\${main}\${suffixe}.e .:ln -sf ../../../../../$exe_name \\\\\${main}\${suffixe}.e:" -e "s:gzip listing:cp listing restartphy.nc ../../../../; exit 0:" \
794	run.sh
795	cp "../$exe_name" bin/
796	bench_cmd="./run.sh -rad $rad" # suppress ferret commands that launch after bench is "over"
797	else
798	myget "3DBenchs/$bench.tar.gz"
799	mkdir "BENCH${grid_resolution}"
800	tar xf "$bench.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1
801
802	if [[ $cosp = "v1" \|\| $cosp = "v2" ]]; then
803	cd "BENCH${grid_resolution}"
804	# copier les fichiers namelist input et output our COSP
805	cp ../DefLists/cosp*_input_nl.txt .
806	cp ../DefLists/cosp*_output_nl.txt .
807	# Activer la cles ok_cosp pour tourner avec COSP
808	sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp
809	\mv -f tmp config.def
810	cd ..
811	fi
812
813	if [[ -n "$benchphysiq" ]]; then
814	cd "BENCH${grid_resolution}"
815	if [[ -f "physiq.def_${benchphysiq}" ]]; then
816	cp "physiq.def_${benchphysiq}" benchphysiq.def
817	echo "using physiq.def_${benchphysiq}"
818	else
819	echo "using standard physiq.def"
820	fi
821	cd ..
822	else
823	echo "using standard physiq.def"
824	fi
825
826	if [[ $with_xios = 1 ]]; then
827	cd "BENCH${grid_resolution}"
828	cp ../DefLists/iodef.xml .
829	cp ../DefLists/context_lmdz.xml .
830	cp ../DefLists/field_def_lmdz.xml .
831	# A raffiner par la suite
832	echo "A FAIRE : Copier les *xml en fonction de l option cosp"
833	cp ../DefLists/field_def_cosp*.xml .
834	cp ../DefLists/file_def_hist*xml .
835	# adapt iodef.xml to use attached mode
836	sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' \
837	iodef.xml > tmp
838	\mv -f tmp iodef.xml
839
840	# and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE.
841	# except for histday
842	for histfile in file_def_hist*xml; do
843	if [[ "$histfile" = "file_def_histday_lmdz.xml" ]]; then
844	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' \
845	"$histfile" > tmp
846	\mv -f tmp "$histfile"
847	sed -e 's@output_level="_AUTO_"@output_level="5"@' "$histfile" \
848	> tmp
849	\mv -f tmp "$histfile"
850	sed -e 's@compression_level="2"@compression_level="0"@' \
851	"$histfile" > tmp
852	\mv -f tmp "$histfile"
853	else
854	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
855	"$histfile" > tmp
856	\mv -f tmp "$histfile"
857	fi
858	done
859	# and add option "ok_all_xml=y" in config.def
860	echo "### XIOS outputs" >> config.def
861	echo 'ok_all_xml=.true.' >> config.def
862
863	#activer les sorties pour Cosp
864	if [[ "$cosp" = "v1" ]]; then
865	sed -i'' -e 's@enabled=".FALSE."@enabled=".TRUE."@' \
866	-e 's@output_level="_AUTO_"@output_level="5"@' \
867	-e 's@compression_level="2"@compression_level="0"@' \
868	file_def_histdayCOSP_lmdz.xml
869	fi
870	if [[ "$cosp" = "v2" ]]; then
871	sed -i'' -e 's@compression_level="2"@compression_level="0"@' file_def_histdayCOSPv2_lmdz.xml
872	for type_ in hf day mth; do
873	file=file_def_hist${type_}COSP
874	sed -i'' -e 's@src="./'${file}'_lmdz.xml"@src="./'${file}'v2_lmdz.xml"@' context_lmdz.xml
875	done
876	sed -i'' -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' field_def_lmdz.xml
877	fi
878
879	cd ..
880	fi
881
882	# Cas Bench avec ecrad
883	if [[ $rad = "ecrad" ]]; then
884	cd "BENCH${grid_resolution}"
885	cp ../DefLists/namelist_ecrad .
886	cp -r ../libf/phylmd/ecrad/data .
887	cd ..
888	fi
889
890	# Adjusting bench physiq.def to radiative code chosen
891	cd "BENCH${grid_resolution}"
892	sed -e 's/iflag_rrtm=.*.$/iflag_rrtm='$iflag_rrtm'/' \
893	-e 's/NSW=.*.$/NSW='$NSW'/' physiq.def > tmpdef
894	\mv tmpdef physiq.def
895	cd ..
896
897	cp "$exe_name" "BENCH${grid_resolution}/gcm.e"
898	cd "BENCH${grid_resolution}"
899
900	if [[ ${parallel:0:3} = "mpi" ]]; then
901	# Lancement avec deux procs mpi et 2 openMP
902	echo "export OMP_STACKSIZE=800M" > bench.sh
903	if [[ "${parallel:4:3}" = "omp" ]]; then
904	echo "export OMP_NUM_THREADS=2" >> bench.sh
905	fi
906	if [[ $cosp = "v1" \|\| $cosp = "v2" ]]; then
907	echo "ulimit -s 200000" >> bench.sh
908	else
909	echo "ulimit -s unlimited" >> bench.sh
910	fi
911	if which mpirun &> /dev/null; then
912	echo "mpirun -np 2 gcm.e &> listing" >> bench.sh
913	elif grep -q "Adastra" /etc/motd; then
914	local account
915	account=$(/usr/sbin/my_project.py -l 2>&1 \| head -1 \| cut -d " " -f 3- \| cut -c 5-)
916	bench_cmd="srun --nodes=1 --ntasks=1 --cpus-per-task=2 --threads-per-core=2 --time=0:10:00 --constraint=GENOA --account=$account bash bench.sh"
917	echo "./gcm.e &> listing" >> bench.sh
918	else
919	echo "Error: No command found to run parallel bench"; exit 1
920	fi
921	if [[ $(hostname \| cut -c -6) = "spirit" ]]; then # ulimit unlimited segfaults on Spirit
922	sed -i'' "s/ulimit -s unlimited/ulimit -Ss 8000/" bench.sh
923	fi
924	# Add rebuild, using reb.sh if it is there
925	cat <<EOF >> bench.sh
926	if [[ -f reb.sh ]]; then
927	./reb.sh histday; ./reb.sh histmth; ./reb.sh histhf;
928	./reb.sh histins; ./reb.sh stomate_history;
929	./reb.sh sechiba_history; ./reb.sh sechiba_out_2
930	fi
931	EOF
932	else
933	echo "./gcm.e &> listing" > bench.sh
934	fi
935	chmod +x bench.sh
936	# Getting orchidee stuff
937	if [[ $veget = 'CMIP6' \|\| $veget = "orch2.0" ]]; then # TODO once we have a 2.2 bench, add it here (or in planned separate bench script)
938	echo 'myget 3DBenchs/BENCHCMIP6.tar.gz'
939	myget 3DBenchs/BENCHCMIP6.tar.gz
940	tar xvzf BENCHCMIP6.tar.gz
941	sed -e "s:VEGET=n:VEGET=y:" config.def > tmp
942	mv -f tmp config.def
943	if [[ $with_xios = 1 ]]; then
944	cp ../../ORCHIDEE/src_xml/context_orchidee.xml .
945	echo '<context id="orchidee" src="./context_orchidee.xml"/>' > add.tmp
946	cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml .
947	cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml .
948	cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml .
949	if [[ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ]]; then
950	cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml .
951	echo '<context id="orchidee" src="./context_input_orchidee.xml"/>' >> add.tmp
952	fi
953	sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp
954	mv tmp iodef.xml
955	sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' \
956	file_def_orchidee.xml > tmp
957	\mv -f tmp file_def_orchidee.xml
958	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
959	file_def_orchidee.xml > tmp
960	\mv -f tmp file_def_orchidee.xml
961	sed -e 's@output_level="_AUTO_"@output_level="1"@' \
962	file_def_orchidee.xml > tmp
963	\mv -f tmp file_def_orchidee.xml
964	sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' \
965	file_def_orchidee.xml > tmp
966	\mv -f tmp file_def_orchidee.xml
967	sed -e 's@compression_level="4"@compression_level="0"@' \
968	file_def_orchidee.xml > tmp
969	\mv -f tmp file_def_orchidee.xml
970	sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' \
971	orchidee.def > tmp
972	\mv -f tmp orchidee.def
973	fi
974	fi
975
976	fi
977
978	if [[ -f ../arch.env ]]; then source ../arch.env; fi
979
980	echo "STARTING BENCH"
981	date
982	if (! $bench_cmd &> out.bench) \|\| ! (tail -n 1 listing \| grep "Everything is cool"); then
983	tail listing
984	echo "Bench FAILED, exiting"; exit 1
985	fi
986	date
987	tail listing
988	fi
989
990	# 1D case
991	if [[ $SCM = 1 ]]; then
992	cd "$MODEL"
993	myget 1D/1D.tar.gz
994	tar xf 1D.tar.gz
995	cd 1D
996	for e in "fcm" "env" "path"; do
997	cp "$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$e" "$MODEL/modipsl/modeles/LMDZ/arch/arch-local.$e"
998	done
999	if [[ $rad = "oldrad" ]]; then
1000	sed -i'' -e 's/^rad=.*$/rad=oldrad/' run.sh
1001	sed -i'' -e 's/^rad=.*$/rad=oldrad/' bin/compile
1002	elif [[ $rad = ecrad ]] ; then
1003	sed -i'' -e 's/^rad=.*$/rad=ecrad/' run.sh
1004	sed -i'' -e 's/^rad=.*$/rad=ecrad/' bin/compile
1005	fi
1006	echo "Running 1D/run.sh, log in $(pwd)/run1d.log"
1007	./run.sh &> "$(pwd)/run1d.log"
1008	fi
1009	}
1010
1011	function run_bench_icosa {
1012	local bench_cmd="./bench.sh"
1013
1014	if [[ $icolmdz = 1 ]]; then
1015	cd "$MODEL/modipsl/modeles/ICOSA_LMDZ"
1016	if [[ $bench = 1 ]]; then
1017	namebench="bench_icolmdz_nbp10_79"
1018	rm -rf $namebench
1019	myget "3DBenchs/$namebench.tar.gz"
1020	mkdir -p $namebench
1021	tar xf "$namebench.tar.gz" -C "$namebench" --strip-components=1
1022	cd $namebench
1023	# copy executables
1024	if [[ ! -x ../bin/icosa_lmdz.exe ]]; then
1025	echo "STOP in icosa_lmdz bench, icosa_lmdz.exe executable not present"; exit 1
1026	fi
1027	cp ../bin/icosa_lmdz.exe .
1028	if [[ ! -x ../../XIOS/bin/xios_server.exe ]]; then
1029	echo "STOP in icosa_lmdz bench, XIOS executable not present"; exit 1
1030	fi
1031	cp ../../XIOS/bin/xios_server.exe .
1032	echo "STARTING ICOSA_LMDZ BENCH"
1033	date
1034	if (! $bench_cmd &> out.bench) \|\| ! ( grep "Time elapsed" listing); then
1035	tail listing
1036	echo "ICOSA_LMDZ bench FAILED, exiting"; exit 1
1037	fi
1038	date
1039	echo "ICOSA_LMDZ bench finished"
1040	fi
1041	fi
1042
1043	}
1044	# If sourced: returns, else run setup
1045	if [[ ! "${BASH_SOURCE[0]}" = "$0" ]]; then return 0; fi
1046
1047	echo "install_lmdz.sh DEBUT $(date)"
1048
1049	function wrapper_run_all() {
1050	set_default_params
1051	read_cmdline_args "$@"
1052	ensure_correct_option_combinations
1053	download_modipsl_tar
1054	get_lmdz_version
1055	get_dynamico_icosa_version
1056	get_orchidee_version
1057	init_arch
1058	check_available_software
1059	check_compiler
1060	install_netcdf
1061	install_IOIPSL
1062	install_XIOS
1063	compile_orchidee
1064	compile_lmdz
1065	compile_icolmdzor
1066	run_bench
1067	run_bench_icosa
1068	}
1069
1070	set +e; (set -e && wrapper_run_all "$@"); err_status=$?; set -e # workaround to make sure set -e is propagated to wrapper_run_all & check the result
1071	if (($err_status)); then
1072	echo "EXIT (error)"
1073	echo "install_lmdz.sh failed"
1074	set +u
1075	if [[ $verbose != 1 ]]; then
1076	echo "Consider using the \`-verbose\` flag to see precisely where it stopped."
1077	fi
1078	fi

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