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source: BOL/script_install/install_lmdz.sh @ 5377

Last change on this file since 5377 was 5377, checked in by abarral, 8 days ago
Move check_available_software after init_arch to ensure proper modules are loaded
Property svn:executable set to ``*
File size: 40.0 KB

Line
1	#!/bin/bash
2	set -eu # error on command failure, and on unset variables
3	export LC_ALL=C # standardize awk format
4
5	###########################################################################
6	# Author : Laurent Fairhead et Frédéric Hourdin
7	# Usage : install_lmdz.sh -help
8	#
9	# bash installation script of the LMDZ model on different computer types :
10	# Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS)
11	#
12	# The model is downloaded in the following directory tree
13	# $MODEL/modipsl/modeles/...
14	# using the "modipsl" infrastructure created by the "IPSL"
15	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
16	# activities.
17	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
18	# components.
19	#
20	# The sources of the models can be found in the "modeles" directory.
21	# In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of
22	# input-outputs using the NetCDF library).
23	#
24	# The script downloads various source files (including a version of NetCDF)
25	# and utilities, compiles the model, and runs a test simulation in a
26	# minimal configuration.
27	#
28	# Prerequisites : gfortran, bash or ksh, wget, gunzip, tar, ...
29	#
30	# Modif 18/11/2011
31	# changes for option real 8.
32	# We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
33	# but with -r4 for netcdf. Variable real must be set to
34	# r4 or r8 at the beginning of the script below.
35	#
36	###########################################################################
37
38	### Functions
39
40	function myget {
41	# Get a file from LMDZ repository, make it executable if .(ba)sh
42	local url=$1
43
44	local filename
45	filename=$(basename "$url")
46
47	wget --no-check-certificate -nv "http://lmdz.lmd.jussieu.fr/pub/$url"
48	if [[ $filename =~ .*\.(ba)?sh ]]; then chmod +x "$filename"; fi
49	}
50
51	function do_compile_sh {
52	local component=$1
53	local command=$2
54	local log
55
56	log="$(pwd)/$component.log"
57	echo "$command" > compile.sh
58	echo "Compiling $component using $(\cat compile.sh) (log: $log) $(date)"
59	chmod +x ./compile.sh
60	if ! ./compile.sh &> "$log"; then
61	echo "STOP: $component compilation failed, exiting"; exit 1
62	fi
63	echo "Finished $component compilation $(date)"
64	}
65
66	function get_svn_branch {
67	local url=$1
68	local rev=$2
69	local res
70
71	res=$(svn log -v -q "$url" -r "$rev" -l 1 \| cut -d "/" -f -4)
72	if echo "$res" \| grep -q "/trunk/"; then
73	res=$(echo "$res" \| grep "/trunk/" \| head -1 \| cut -d "/" -f 2-3)
74	elif echo "$res" \| grep -q "/branches/"; then
75	res=$(echo "$res" \| grep "/branches/" \| head -1 \| cut -d "/" -f 2-4)
76	else
77	echo "Could not determine svn branch for $url, r=$rev"
78	fi
79	echo "$res"
80	}
81
82	function set_default_params {
83	# Valeur par défaut des parametres
84	svn_lmdz=""
85	version="20241018.trunk"
86
87	netcdf=1
88	bench=1
89	SCM=0
90	veget="none"
91	grid_resolution="32x32x39"
92	benchphysiq=""
93	compphysiq="lmd"
94	is_1D="n"
95	fortran_file="gcm"
96
97	parallel="none"
98	trusting="testing"
99	MODEL=""
100
101	with_xios=0
102	opt_makelmdz_xios=""
103
104	icolmdz=0
105	dynamico_commit="11001689"
106
107	rad="rrtm"
108
109	compile_with_fcm=1
110
111	cosp="none"
112	aerosols=0
113	strataer=0
114	inlandsis=0
115
116	make_j=8
117	clean_install=1
118	local="$(pwd)"
119
120	# Check if on a Mac /!\ Probably doesn't work anymore, to fix one day...
121	if [[ $(uname) = "Darwin" ]]; then
122	export MAKE="make"
123	fi
124
125	optim_flag="-prod"
126	arch="local"
127
128	arch="local-gfortran"
129	arch_dir=""
130
131	jobcmd=""
132	}
133
134	function read_cmdline_args {
135	while (($# > 0)); do
136	case $1 in
137	"-h") cat <<........fin
138	$0 [ -v version ] [ -r svn_release ]
139	[ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ]
140	[-name LOCAL_MODEL_NAME] [-rad RADIATIF]
141
142	-v "version" like 20150828.trunk, see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk (default <$version>)
143
144	-r "svn_release" : either the svn release number or "last" (default <$svn_lmdz>)
145
146	-parallel parallel support: mpi, omp, mpi_omp (mpi with openMP) or none (default: <$parallel>)
147
148	-d "grid resolution": should be among the available benchs if -bench 1 (valid values: 48x36x19, 48x36x39) (default : <$grid_resolution>)
149
150	-bench activating the bench or not (0/1) (default: <$bench>)
151
152	-unstable use unstable tar instead of testing
153
154	-name name of the folder to install to (default <$MODEL>)
155
156	-netcdf 0, 1 or PATH. 0: do not download NetCDF, look for it in standard locations (/usr); 1: download and compile NetCDF; PATH: full path to an existing installed NetCDF library (default: <$netcdf>)
157
158	-xios use (download and compile) the XIOS library (will compile the parallel NetCDF4-HDF5 library) (requires to also have -parallel mpi_omp)
159
160	-cosp to run with cospv1 or cospv2 [none/v1/v2] (default <$cosp>)
161
162	-rad radiative code: oldrad, rrtm or ecrad (default <$rad>)
163
164	-nofcm to compile without fcm
165
166	-SCM install 1D version automatically
167
168	-debug compile everything in debug mode
169
170	-benchphysiq to choose which physics.def package to use in the bench (default <$benchphysiq>)
171
172	-compilephysiq physics to compile the model with (default <$compphysiq>)
173
174	-veget surface/vegetation scheme treatment controlled by the single variable veget which can have the following values: none: bucket scheme (default); CMIP6 \| veget2.0: orchidee version used in CMIP exercise, rev 5661; veget2.2: orchidee branch 2.2, rev 8529 (bundled); number: orchidee version number [only orch>2.0] (default $veget)
175
176	-spla activate interactive aerosols
177
178	-inlandsis activate new snow scheme
179
180	-arch name of the arch to use (default <$arch>)
181
182	-arch_dir where to find the arch files (default <$arch_dir>)
183
184	-make_j number of processes to parallelize installations (default <$make_j>)
185
186	-jobcmd command prepended to fcm compile jobs, e.g. "srun" (default <$jobcmd>)
187
188	-noclean will only download necessary files (but no thorough check is made on the integrity of existing files), and will recompile everything (very quick if it's already been compiled before)
189
190	-icolmdz to compile the icolmdz executable as well as the lonlat one
191
192	........fin
193	exit 1;;
194	"-v") version=$2; shift; shift;;
195	"-r") svn_lmdz=$2; shift; shift;;
196	"-d") grid_resolution=$2; shift; shift;;
197	"-unstable") trusting="unstable"; shift;;
198	"-cosp") cosp=$2
199	case $cosp in
200	"none"\|"v1"\|"v2") cosp=$2; shift; shift;;
201	*) echo "Only none v1 v2 for cosp option"; exit 1
202	esac;;
203	"-nofcm") compile_with_fcm=0; echo "This option will be reactivated soon (promesse du 8dec2022)"; exit 1; shift;;
204	"-SCM") SCM=1; shift;;
205	"-rad") rad=$2
206	case $rad in
207	"oldrad"\|"rrtm"\|"ecrad") rad=$2; shift; shift;;
208	*) echo "Only oldrad rrtm ecrad for rad option"; exit 1
209	esac;;
210	"-parallel") parallel=$2
211	case $parallel in
212	"none"\|"mpi"\|"omp"\|"mpi_omp") parallel=$2; shift; shift;;
213	*) echo "Only none mpi omp mpi_omp for the parallel option"; exit 1
214	esac;;
215	"-bench") bench=$2; shift; shift;;
216	"-debug") optim_flag="-debug"; shift;;
217	"-name") MODEL=$2; shift; shift;;
218	"-netcdf") netcdf=$2; shift; shift;;
219	"-benchphysiq") benchphysiq=$2; shift; shift;;
220	"-compilephysiq") compphysiq=$2; shift; shift;;
221	"-xios") with_xios=1; shift;;
222	"-arch") arch=$2; shift; shift;;
223	"-arch_dir") arch_dir=$2; shift; shift;;
224	"-veget") veget=$2; shift; shift;;
225	"-spla") aerosols=1; shift;;
226	"-strataer") strataer=1; shift;;
227	"-inlandsis") inlandsis=1; shift;;
228	"-make_j") make_j=$2; shift; shift;;
229	"-jobcmd") jobcmd=$2; shift; shift;;
230	"-noclean") clean_install=0; shift;;
231	"-icolmdz") icolmdz=1; shift;;
232	*) bash install_lmdz.sh -h; exit 1
233	esac
234	done
235
236	# Isotopes : Compile and run with isotopes if lmdz_phys="lmdiso" in main.sh
237	if [[ $compphysiq = "lmdiso" ]]; then isotopes=1; else isotopes=0; fi
238
239	# Option de compilation pour Cosp
240	case $cosp in
241	v1) opt_cosp="-cosp true";;
242	v2) opt_cosp="-cospv2 true";;
243	*) opt_cosp=""
244	esac
245
246	#Define veget-related suffix for gcm name
247	if [[ $veget = 'none' ]]; then
248	suff_orc=''
249	else
250	suff_orc='_orch'
251	fi
252
253
254	if [[ $parallel = "none" ]]; then
255	suff_para='_seq'
256	else
257	suff_para='_para_mem'
258	fi
259
260	if [[ $with_xios = 1 ]]; then opt_makelmdz_xios="-io xios"; fi
261
262	if [[ $aerosols = 1 ]]; then
263	opt_aer="-dust true"; suff_aer="_spla"
264	else
265	opt_aer=""; suff_aer=""
266	fi
267
268	if [[ $strataer = 1 ]]; then
269	opt_strataer="-strataer true"
270	else
271	opt_strataer=""
272	fi
273
274	if [[ $inlandsis = 1 ]]; then
275	opt_inlandsis="-inlandsis true"
276	else
277	opt_inlandsis=""
278	fi
279
280	if [[ $isotopes = 1 ]]; then
281	opt_isotopes="-isotopes true"; suff_iso="_iso"
282	else
283	opt_isotopes="" ; suff_iso=""
284	fi
285
286	# set default arch if parallel
287	if [[ $arch = "local-gfortran" && $parallel != "none" ]]; then
288	arch="local-gfortran-parallel"
289	echo "Switching default arch to $arch"
290	fi
291
292	# Name of the model's folder. The convention taken here is that models that requires different compilation sources should have a different names.
293	local xios_name=""
294	if [[ $with_xios = 1 ]]; then xios_name="XIOS"; fi
295	if [[ $MODEL = "" ]]; then MODEL="./LMDZ$version${svn_lmdz}OR$veget$xios_name"; fi
296
297	if [[ $arch_dir = "" ]]; then
298	arch_dir="$MODEL/modipsl/config/IPSLCM7/ARCH/";
299	elif ! readlink -fe "$arch_dir" >/dev/null; then
300	echo "STOP: no arch dir <$arch_dir>"; exit 1
301	fi
302
303	if ! (echo "$grid_resolution" \| grep -q "x"); then
304	is_1D="y"
305	fortran_file="lmdz1d"
306	fi
307	}
308
309	function ensure_correct_option_combinations {
310	# Check on veget version
311	if [[ $veget != 'none' && $veget != "CMIP6" && $veget != "orch2.0" && $veget != "orch2.2" ]]; then
312	re='^[0-9]+$'
313	if ! [[ $veget =~ $re ]]; then
314	echo 'Valeur de l option veget non valable'; exit 1
315	fi
316	fi
317
318	## if compiling icolmdz, XIOS must be set
319	if [[ $icolmdz = 1 && $with_xios = 0 ]]; then
320	echo "Error, you must set -xios to compile the icolmdz executable"; exit 1
321	fi
322	## if also compiling XIOS, parallel must be mpi_omp
323	if [[ $with_xios = 1 && $parallel != "mpi_omp" ]]; then
324	echo "Error, you must set -parallel mpi_omp if you want XIOS"; exit 1
325	fi
326
327	if [[ $cosp = "v2" && $with_xios = 0 ]]; then
328	echo "Error, Cospv2 cannot run without Xios"; exit 1
329	fi
330
331	# STOP if trying to use both ORCHIDEE and Isotopes :
332	if [[ $isotopes = 1 && $veget != "none" ]]; then
333	echo "STOP: You cannot run LMDZ with ORCHIDEE and ISOtopes at the same time"; exit 1
334	fi
335
336	# STOP if trying to use both SPLA and Isotopes :
337	if [[ $isotopes = 1 && $aerosols = 1 ]]; then
338	echo "STOP: You cannot run LMDZ with Isotopes and aerosols=spla at the same time"; exit 1
339	fi
340
341	# (Temporary) STOP if trying to use Isotopes with XIOS :
342	if [[ $isotopes = 1 && $with_xios = 1 ]]; then
343	echo "STOP: Isotopes cannont yet be run with XIOS"; exit 1
344	fi
345
346	if [[ $aerosols = 1 && $rad != "rrtm" ]]; then
347	echo "STOP: For the time being, <aerosols=spla> requires <rad=rrtm>"; exit 1
348	fi
349	}
350
351	function check_available_software {
352	local required_soft=("wget" "tar" "gzip" "make" "gcc" "cmake" "m4" "c++")
353	echo "Checking if required software is available (${required_soft[*]})"
354	for logiciel in "${required_soft[@]}"; do
355	if [[ $(which "$logiciel") = "" ]]; then
356	echo "You must first install $logiciel on your system"; exit 1
357	fi
358	done
359	}
360
361	function download_modipsl_tar {
362	if [[ $clean_install = 1 ]]; then rm -rf "$MODEL"; fi
363
364	mkdir -p "$MODEL"
365	MODEL=$(readlink -e -f "$MODEL"); echo "MODEL: $MODEL" # absolute path
366	if [[ ! -d "$MODEL/modipsl" ]]; then
367	echo "Downloading a slightly modified version of modipsl+LMDZ"
368	cd "$MODEL"
369	getlog="$(pwd)/get.log"
370	echo "logfile : $getlog"
371	set +e; myget "src_archives/$trusting/modipsl.$version.tar.gz" &>> "$getlog"; set -e
372	if [[ ! -f "modipsl.$version.tar.gz" ]]; then
373	echo "STOP: failed to download modipsl. $getlog: <$(tail "$getlog")>"; exit 1
374	fi
375	echo "install_lmdz.sh wget_OK $(date)"
376
377	gunzip "modipsl.$version.tar.gz" &>> get.log
378	tar xf "modipsl.$version.tar" &>> get.log
379	rm "modipsl.$version.tar"
380	fi
381	}
382
383	function init_arch {
384	cd "$local"
385	set +e; arch_dir=$(readlink -f "$arch_dir"); set -e # full path. readlink must be called after the path is created
386
387	# Check where default fcm, path, env are located - by default in $arch_path, instead in $MODEL/modipsl/modeles/LMDZ/arch/
388	local i fcm_path path_path env_path
389	for i in "path" "fcm" "env"; do
390	local varname=${i}_path
391	if [[ -f $arch_dir/arch-$arch.$i ]]; then
392	declare $varname="$arch_dir/arch-$arch.$i"
393	else
394	declare $varname="$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$i"
395	if [[ ! -f ${!varname} ]]; then
396	echo "STOP: no ${!varname}"; exit 1
397	fi
398	fi
399	done
400	default_fcm_path=$fcm_path
401	default_path_path=$path_path
402	default_env_path=$env_path
403
404	# check compiler
405	compiler=$(< "$default_fcm_path" grep "%COMPILER" \| sed -e "s/%COMPILER\s*//")
406
407	# load env
408	# shellcheck disable=SC1090
409	if [[ -f $default_env_path ]]; then source "$default_env_path"; fi
410
411	local mpi_file # can't be done before as it depends on sourcing the env
412	mpi_file=$(readlink -e -f "$(which mpif90)")
413	path_mpi=$(dirname "$mpi_file")
414	root_mpi=$(dirname "$path_mpi")
415	}
416
417	function check_compiler {
418	# Must be called after init_arch to know which compiler to use
419	cat <<eod > tt.f90
420	print*,'coucou'
421	end
422	eod
423	$compiler tt.f90 \|\| a.out
424	./a.out >\| tt
425	if [[ $(< tt sed -e 's/ //g' ) != "coucou" ]]; then
426	echo "problem installing with compiler $compiler"; exit 1
427	fi
428	rm tt a.out tt.f90
429	}
430
431	function install_arch {
432	local component=$1
433
434	# Use same .env for all components (for module compatibility)
435	cp -f "$default_env_path" "$MODEL/modipsl/modeles/$component/arch" &> /dev/null \|\| true # allow failure if we're copying the file to itself
436
437	# Use local .path and .fcm if available, otherwise default
438	if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.path" ]]; then
439	cp -f "$default_path_path" "$MODEL/modipsl/modeles/$component/arch"
440
441	if [[ $component = "ORCHIDEE" ]]; then
442	if [[ $orcbranch = "/tags/ORCHIDEE_2_0/ORCHIDEE" ]]; then # 2.0 and before have a different fcm convention
443	sed -i'' -e "s/-I//" -e "s/-L//" "$MODEL/modipsl/modeles/ORCHIDEE/arch/arch-$arch.path" # /!\ we only replace first occurence on purpose
444	fi
445	fi
446	fi
447	if [[ ! -f "$MODEL/modipsl/modeles/$component/arch/arch-$arch.fcm" ]]; then
448	cp -f "$default_fcm_path" "$MODEL/modipsl/modeles/$component/arch"
449
450	if [[ $component = "XIOS" ]]; then
451	# Adapt for XIOS, which uses different naming conventions
452	sed -i'' -e "s/%COMPILER/%FCOMPILER/" -e "s/%LINK/%LINKER/" -e "s/-fdefault-real-8//" "$MODEL/modipsl/modeles/XIOS/arch/arch-$arch.fcm"
453	fi
454	fi
455	}
456
457	function install_netcdf {
458	echo "Installing Netcdf"
459	local ncdf_compiler="$compiler"
460
461	if [[ $netcdf = 0 ]]; then
462	ncdfdir=$(nf-config --prefix)
463	else
464	cd "$MODEL"
465
466	# Convert non-basic compiler
467	case $compiler in
468	mpif90) ncdf_compiler=$($compiler --version \| head -n 1 \| cut -d " " -f -1)
469	esac
470
471	case $ncdf_compiler in
472	gfortran \| GNU) ncdf_compiler="gfortran"; opt1="-compiler gnu"; opt2="-CC gcc -FC gfortran -CXX g++";;
473	*) echo "unexpected compiler $ncdf_compiler for netcdf"; exit 1
474	esac
475
476	case $with_xios in
477	0) script_install_netcdf="install_netcdf4_hdf5_seq.bash"
478	ncdfdir="netcdf4_hdf5_seq"
479	opt_="$opt1";;
480	1) script_install_netcdf="install_netcdf4_hdf5.bash"
481	ncdfdir="netcdf4_hdf5"
482	opt_="$opt2 -MPI $root_mpi";;
483	*) echo "with_xios=$with_xios, should be 0 or 1"; exit 1
484	esac
485	if [[ $netcdf = 1 ]]; then
486	ncdfdir="$MODEL/$ncdfdir"
487	else
488	mkdir -p "$netcdf"; ncdfdir="$netcdf/$ncdfdir"
489	fi
490
491	echo "Repertoire netcdf $ncdfdir"
492	if [[ ! -d $ncdfdir ]]; then
493	netcdflog=$(pwd)/netcdf.log
494	echo "----------------------------------------------------------"
495	echo "Compiling the Netcdf library"
496	echo "----------------------------------------------------------"
497	echo "log file : $netcdflog"
498	myget script_install/$script_install_netcdf &>> "$netcdflog"
499	chmod u=rwx $script_install_netcdf
500	# shellcheck disable=SC2086
501	./$script_install_netcdf -prefix "$ncdfdir" $opt_ &>> "$netcdflog"
502	fi
503
504	# Add to path
505	export PATH="$ncdfdir/bin:$PATH"
506	echo "Bin PATH" $PATH
507
508	#----------------------------------------------------------------------------
509	# LF rajout d'une verrue, pour une raison non encore expliquee,
510	# la librairie est parfois rangée dans lib64 et non dans lib
511	# par certains compilateurs
512	if [[ ! -e lib && -d lib64 ]]; then ln -s lib64 lib; fi
513	#----------------------------------------------------------------------------
514
515	echo "install_lmdz.sh netcdf_OK $(date)"
516	fi
517
518	cat >test_netcdf90.f90 <<EOF
519	use netcdf
520	print *, "NetCDF library version: ", nf90_inq_libvers()
521	end
522	EOF
523
524	if $ncdf_compiler -I"$ncdfdir"/include test_netcdf90.f90 -L"$ncdfdir"/lib -lnetcdff -lnetcdf -Wl,-rpath="$ncdfdir"/lib && ./a.out; then
525	rm test_netcdf90.f90 a.out
526	else
527	cat <<EOF
528	Failed test program using NetCDF-Fortran. You can:
529	- check that you have NetCDF-Fortran installed in your system
530	- or specify an installation directory with option -netcdf of install_lmdz.sh
531	- or download and compile NetCDF-Fortran with option -netcdf 1 of install_lmdz.sh
532	EOF
533	exit 1
534	fi
535
536	# Compile NetCDF95
537	cd "$MODEL/modipsl/modeles/LMD"*
538	echo "Installing NetCDF95"
539	cd "$MODEL"
540	if [[ ! -d "NetCDF95-0.3" ]]; then
541	myget src_archives/netcdf/NetCDF95-0.3.tar.gz
542	tar -xf NetCDF95-0.3.tar.gz
543	rm NetCDF95-0.3.tar.gz
544	cd NetCDF95-0.3
545	mkdir -p build && cd build
546	netCDF_INCLUDE_DIR=$(nc-config --includedir) netCDF_LIBRARY=$(nc-config --libdir) cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH="$ncdfdir" -DCMAKE_INSTALL_PREFIX="$MODEL/modipsl"
547	make install
548	fi
549	}
550
551	function install_IOIPSL {
552	install_arch "IOIPSL"
553
554	cd "$MODEL/modipsl/modeles/IOIPSL"
555	ioipsllog="$(pwd)/ioipsl.log"
556	echo "Compiling IOIPSL, the interface library with Netcdf $(date) (log: $ioipsllog)"
557	# in case ksh is not installed on the pc
558	if [[ ! -x /bin/ksh ]]; then
559	sed -i'' -e 's/ksh/bash/' ins_m_prec
560	fi
561	echo "$jobcmd ./makeioipsl_fcm -j $make_j -arch $arch $optim_flag" > compile.sh
562	chmod +x compile.sh
563	echo "Compiling IOIPSL using $(\cat compile.sh)"
564	if ! ./compile.sh &> "$ioipsllog"; then
565	echo "STOP: IOIPSL compile failed, exiting"; exit 1
566	fi
567
568	# Link to modipsl/bin
569	cp -f bin/* ../../bin
570
571	echo "IOIPSL compiled $(date)"
572	}
573
574	function install_XIOS {
575	if [[ $with_xios = 1 ]]; then
576	cd "$MODEL/modipsl/modeles"
577	xioslog="$(pwd)/XIOS/xios.log"
578	echo "##########################################################"
579	echo "Compiling XIOS (log $xioslog) $(date)"
580	echo "##########################################################"
581
582	# Download XIOS
583	local xios_http="http://forge.ipsl.fr/ioserver/svn/XIOS2/branches/xios-2.6"
584	local xios_rev="2568"
585
586	cd "$MODEL/modipsl/modeles"
587	set +e; svn co -r $xios_rev $xios_http XIOS; set -e
588
589	cd XIOS
590
591	install_arch "XIOS"
592	do_compile_sh "XIOS" "$jobcmd ./make_xios --job $make_j --arch $arch"
593	fi
594	}
595
596	function get_orchidee_version { # Set / Check ORCHIDEE version
597	echo "Checking Orchidee source version"
598	local fetch_rev=""
599	orcbranch=""
600	case $veget in
601	"none") fcm_veget_version="false";;
602	"orch2.0" \| "CMIP6") fcm_veget_version=orchidee2.0; fetch_rev=7906;; # in previous tar we used 6592 but with some modifications to xios_orchidee.f90, which got integrated in 7906
603	"orch2.2") fcm_veget_version=orchidee2.1; orcbranch="/branches/ORCHIDEE_2_2/ORCHIDEE" ;; # the bundled version
604	*) fetch_rev=$veget; fcm_veget_version=orchidee2.1;; # /!\ arbitary rev only works for orch>=2.1
605	# /!\ Note: for orch>=4, we should be using fcm_vegt_version="orchideetrunk". Below copied comment by Adriana in LMDZ_Setup docs:
606	# Avec orchidee2.1, on va compiler LMDZ avec le cle cpp ORCHIDEE_NOLIC. On ne va donc pas prendre en compte les avancements fait dans le trunk qui permet que les fractions lic soitent traité par ORCHIDEE. Ca marche très bien sans cela puisque dans tout façon c'est en cours de développement et ce n'est pas activé par default. En fait on devrait compiler le trunk avec -v orchideetrunk mais avec landice_opt>2, ce qui ne change rien par rapport à orchidee2.1
607	#Si on voudrait activer landice_opt=2 , il faut compiler avec -v orchideetrunk.
608
609	esac
610
611	if [[ -n $fetch_rev ]]; then
612	echo "IF YOU INSTALL ORCHIDEE THE VERY FIRST TIME, ASK for PASSWORD at orchidee-help@listes.ipsl.fr"
613	local curr_rev
614	curr_rev=$(svn info "$MODEL/modipsl/modeles/ORCHIDEE" \| grep Revision: \| cut -d ":" -f 2 \| cut -c 2-)
615	orcbranch=$(svn log -v -q svn://forge.ipsl.fr/orchidee/ -r "$fetch_rev" \| grep ORCHIDEE \| head -1 \| sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' \| awk '{print $2}')
616	if [[ $fetch_rev != "$curr_rev" ]]; then
617	echo "Fetching orch $fetch_rev from the repository (curr: $curr_rev)"
618	echo "branch is $orcbranch"
619	if [[ $fetch_rev -lt 4465 ]]; then echo 'ORCHIDEE version must be >=4465, exiting'; exit 1; fi
620	cd "$MODEL/modipsl/modeles"
621	rm -rf ORCHIDEE
622	svn co -r "$fetch_rev" "svn://forge.ipsl.fr/orchidee/$orcbranch"
623	cd - > /dev/null
624	fi
625	fi
626
627	# Check parallel LMDZ+ORCH
628	if [[ (! $veget = "none") && $parallel = "none" && ($used_lmdz_rev -lt 4894) ]]; then
629	echo "LMDZ revision must be >=4894 for orchidee without parallel support. Upgrade lmdz or use -parallel mpi_omp."; exit 1
630	fi
631	}
632
633	function compile_orchidee {
634	install_arch "ORCHIDEE"
635
636	if [[ $veget != "none" ]]; then
637	cd "$MODEL/modipsl/modeles/ORCHIDEE"
638
639	local xios_orchid
640	if [[ $with_xios = 1 ]]; then
641	xios_orchid="-xios";
642	else
643	xios_orchid="-noxios"
644	fi
645
646	if [[ $parallel != "none" && ! -d src_parallel ]]; then
647	echo "STOP: Orchidee version too old for parallel support"; exit 1
648	fi
649	do_compile_sh "ORCHIDEE" "$jobcmd ./makeorchidee_fcm -j $make_j $xios_orchid $optim_flag -parallel $parallel -arch $arch"
650	fi
651	}
652
653	function get_lmdz_version {
654	echo "Checking LMDZ source version"
655	LMDZPATH=$(readlink -e -f "$MODEL/modipsl/modeles/LMD"*)
656	cd "$LMDZPATH"
657
658	if [[ -n $svn_lmdz ]]; then
659	local curr_rev
660	curr_rev=$(svn info "$MODEL/modipsl/modeles/LMD"* \| grep Revision: \| cut -d ":" -f 2 \| cut -c 2-)
661	if [[ $svn_lmdz != "$curr_rev" ]]; then
662	local lmdzbranch
663	echo "Fetching LMDZ $svn_lmdz from the repository"
664	lmdzbranch=$(get_svn_branch "https://svn.lmd.jussieu.fr/LMDZ" "$svn_lmdz")
665	echo "branch is $lmdzbranch"
666	cd "$MODEL/modipsl/modeles"
667	rm -rf LMD*
668	svn co -r "$svn_lmdz" "https://svn.lmd.jussieu.fr/LMDZ/$lmdzbranch" LMDZ
669	cd - > /dev/null
670	fi
671	used_lmdz_rev=$svn_lmdz
672	else # get svn from info
673	set +e; used_lmdz_rev=$(svn info \| grep "Last Changed Rev" \| cut -c 19-); set -e
674	if [[ -z $used_lmdz_rev ]]; then # svn info failed
675	used_lmdz_rev=$(grep 'Revision: [0-9]' "$MODEL"/Read*.md \| awk ' { print $2 } ' 2>/dev/null)
676	if [[ -z $used_lmdz_rev ]]; then echo "Could not determine lmdz version. This is likely an issue with the .tar itself, please report to LMDZ team."; exit 1; fi
677	fi
678	fi
679	}
680
681	function compile_lmdz {
682	install_arch "LMDZ"
683	cd "$LMDZPATH"
684
685	if [[ $used_lmdz_rev -le 4185 ]]; then
686	exe_name="bin/${fortran_file}_${grid_resolution}_phy${compphysiq}_${suff_para}${suff_orc}${suff_aer}${suff_iso}.e"
687	else
688	exe_name="bin/${fortran_file}_${grid_resolution}_phy${compphysiq}_${rad}${suff_para}${suff_orc}${suff_aer}${suff_iso}.e"
689	fi
690
691	local opt_rad
692	case $rad in
693	oldrad) iflag_rrtm=0; NSW=2; opt_rad="";;
694	rrtm) iflag_rrtm=1; NSW=6
695	if [[ $used_lmdz_rev -le 4185 ]]; then
696	opt_rad="-rrtm true"
697	else
698	opt_rad="-rad rrtm"
699	fi;;
700	ecrad) iflag_rrtm=2; NSW=6; opt_rad="-rad ecrad";;
701	*) echo "Only oldrad rrtm ecrad for rad option"; exit 1
702	esac
703	if [[ $used_lmdz_rev -le 4185 && $rad = "ecrad" ]]; then
704	echo "ecrad only available for LMDZ rev starting with 4186 "; exit 1
705	fi
706
707	# Compile
708	local makelmdz="makelmdz_fcm $optim_flag -arch $arch -j $make_j"
709	local para_compile_opt="-mem -parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi
710	do_compile_sh "LMDZ" "$jobcmd ./$makelmdz $opt_rad $opt_cosp $opt_makelmdz_xios $opt_aer $opt_inlandsis $opt_strataer $opt_isotopes -p $compphysiq -d ${grid_resolution} -v $fcm_veget_version $para_compile_opt $fortran_file"
711
712	# Check executable
713	if [[ ! -f $exe_name ]]; then
714	echo "STOP: Compilation failed, can't find the executable"; exit 1
715	else
716	echo "Compilation successful, the executable is $exe_name $(date)"
717	fi
718	}
719
720	function get_dynamico_icosa_version {
721	if [[ $icolmdz = 1 ]]; then
722	echo "Checking DYNAMICO source version"
723	cd "$MODEL/modipsl/modeles"
724	if [[ ! -d DYNAMICO ]]; then
725	git clone https://gitlab.in2p3.fr/ipsl/projets/dynamico/dynamico.git DYNAMICO
726	fi
727	cd DYNAMICO
728	git checkout master && git checkout $dynamico_commit
729	cd - > /dev/null
730
731	echo "Checking ICOSA_LMDZ source version"
732	if [[ ! -d ICOSA_LMDZ ]]; then
733	svn checkout http://svn.lmd.jussieu.fr/LMDZ/ICOSA_LMDZ
734	fi
735	cd ICOSA_LMDZ
736	svn up -r 5320
737	fi
738	}
739
740	function compile_icolmdzor {
741	if [[ $icolmdz = 1 ]]; then
742	install_arch "ICOSA_LMDZ"
743	local para_compile_opt="-parallel $parallel"; if [[ $parallel = "none" ]]; then para_compile_opt=""; fi
744
745	# LMDZ physics package library already available in LMDZ/config/lib directory
746
747	# Compile DYNAMICO
748	cd "$MODEL/modipsl/modeles/DYNAMICO"
749
750	# Need to get rather than install the archs as DYNAMICO uses FCMv2 that does not understand the makefile syntax ($shell)
751	cd arch
752	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.env"
753	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.fcm"
754	wget "http://lmdz.lmd.jussieu.fr/pub/src_archives/misc/arch/DYNAMICO/arch-$arch.path"
755	cd ..
756
757	do_compile_sh "DYNAMICO" "$jobcmd ./make_icosa $optim_flag -arch $arch -job $make_j $para_compile_opt -external_ioipsl -with_xios"
758
759	# Compile icosa_lmdz
760	echo "Bin PATH before icosalmdz" "$PATH"
761	cd "$MODEL/modipsl/modeles/ICOSA_LMDZ"
762	do_compile_sh "ICOSA_LMDZ" "$jobcmd ./make_icosa_lmdz -arch $arch -j $make_j -nodeps -p lmd $optim_flag $para_compile_opt -with_orchidee"
763	echo "# Running environment for icosa_lmdz" > icosalmdz.env
764	echo "# " >> icosalmdz.env
765	if [[ -v LD_LIBRARY_PATH ]]; then
766	echo "export LD_LIBRARY_PATH=$ncdfdir/lib:$LD_LIBRARY_PATH" >> icosalmdz.env
767	else
768	echo "export LD_LIBRARY_PATH=$ncdfdir/lib" >> icosalmdz.env
769	fi
770	fi
771	}
772
773	function run_bench {
774	local bench_cmd="./bench.sh"
775
776	cd "$MODEL/modipsl/modeles/LMDZ"*
777
778	if [[ $bench = "tuto" ]]; then
779	myget "Training/tutorial.tar"; tar xf tutorial.tar; cd TUTORIAL
780	./init.sh
781	elif [[ $bench = 1 ]]; then
782	rm -rf "BENCH${grid_resolution}"
783	local bench=bench_lmdz_${grid_resolution}
784	if [[ $compphysiq = "lmdiso" ]]; then bench=bench_lmdz_iso_${grid_resolution}; fi
785
786	if [[ $is_1D = "y" ]] ; then # 1D
787	myget "1D/1D.tar.gz"
788	mkdir -p "BENCH${grid_resolution}"
789	tar xf "1D.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1
790	cd "BENCH${grid_resolution}"
791	# Below: ugly, but until we rewrite the 1D case...
792	sed -i'' -e "s:^listecas=.*$:listecas=ARMCU/REF:" -e "s:cd \$local/bin ; ./compile -L \$L:#cd \$local/bin ; ./compile -L \$L:" \
793	-e "s:./compile -L \$llm:#./compile -L \$llm:" -e "s:ln -sf \$bin/\\\\\${main}\${suffixe}.e .:ln -sf ../../../../../$exe_name \\\\\${main}\${suffixe}.e:" -e "s:gzip listing:cp listing restartphy.nc ../../../../; exit 0:" \
794	run.sh
795	cp "../$exe_name" bin/
796	bench_cmd="./run.sh -rad $rad" # suppress ferret commands that launch after bench is "over"
797	else
798	myget "3DBenchs/$bench.tar.gz"
799	mkdir "BENCH${grid_resolution}"
800	tar xf "$bench.tar.gz" -C "BENCH${grid_resolution}" --strip-components=1
801
802	if [[ $cosp = "v1" \|\| $cosp = "v2" ]]; then
803	cd "BENCH${grid_resolution}"
804	# copier les fichiers namelist input et output our COSP
805	cp ../DefLists/cosp*_input_nl.txt .
806	cp ../DefLists/cosp*_output_nl.txt .
807	# Activer la cles ok_cosp pour tourner avec COSP
808	sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp
809	\mv -f tmp config.def
810	cd ..
811	fi
812
813	if [[ -n "$benchphysiq" ]]; then
814	cd "BENCH${grid_resolution}"
815	if [[ -f "physiq.def_${benchphysiq}" ]]; then
816	cp "physiq.def_${benchphysiq}" benchphysiq.def
817	echo "using physiq.def_${benchphysiq}"
818	else
819	echo "using standard physiq.def"
820	fi
821	cd ..
822	else
823	echo "using standard physiq.def"
824	fi
825
826	if [[ $with_xios = 1 ]]; then
827	cd "BENCH${grid_resolution}"
828	cp ../DefLists/iodef.xml .
829	cp ../DefLists/context_lmdz.xml .
830	cp ../DefLists/field_def_lmdz.xml .
831	# A raffiner par la suite
832	echo "A FAIRE : Copier les *xml en fonction de l option cosp"
833	cp ../DefLists/field_def_cosp*.xml .
834	cp ../DefLists/file_def_hist*xml .
835	# adapt iodef.xml to use attached mode
836	sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' \
837	iodef.xml > tmp
838	\mv -f tmp iodef.xml
839
840	# and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE.
841	# except for histday
842	for histfile in file_def_hist*xml; do
843	if [[ "$histfile" = "file_def_histday_lmdz.xml" ]]; then
844	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' \
845	"$histfile" > tmp
846	\mv -f tmp "$histfile"
847	sed -e 's@output_level="_AUTO_"@output_level="5"@' "$histfile" \
848	> tmp
849	\mv -f tmp "$histfile"
850	sed -e 's@compression_level="2"@compression_level="0"@' \
851	"$histfile" > tmp
852	\mv -f tmp "$histfile"
853	else
854	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
855	"$histfile" > tmp
856	\mv -f tmp "$histfile"
857	fi
858	done
859	# and add option "ok_all_xml=y" in config.def
860	echo "### XIOS outputs" >> config.def
861	echo 'ok_all_xml=.true.' >> config.def
862
863	#activer les sorties pour Cosp
864	if [[ "$cosp" = "v1" ]]; then
865	sed -i'' -e 's@enabled=".FALSE."@enabled=".TRUE."@' \
866	-e 's@output_level="_AUTO_"@output_level="5"@' \
867	-e 's@compression_level="2"@compression_level="0"@' \
868	file_def_histdayCOSP_lmdz.xml
869	fi
870	if [[ "$cosp" = "v2" ]]; then
871	sed -i'' -e 's@compression_level="2"@compression_level="0"@' file_def_histdayCOSPv2_lmdz.xml
872	for type_ in hf day mth; do
873	file=file_def_hist${type_}COSP
874	sed -i'' -e 's@src="./'${file}'_lmdz.xml"@src="./'${file}'v2_lmdz.xml"@' context_lmdz.xml
875	done
876	sed -i'' -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' field_def_lmdz.xml
877	fi
878
879	cd ..
880	fi
881
882	# Cas Bench avec ecrad
883	if [[ $rad = "ecrad" ]]; then
884	cd "BENCH${grid_resolution}"
885	cp ../DefLists/namelist_ecrad .
886	cp -r ../libf/phylmd/ecrad/data .
887	cd ..
888	fi
889
890	# Adjusting bench physiq.def to radiative code chosen
891	cd "BENCH${grid_resolution}"
892	sed -e 's/iflag_rrtm=.*.$/iflag_rrtm='$iflag_rrtm'/' \
893	-e 's/NSW=.*.$/NSW='$NSW'/' physiq.def > tmpdef
894	\mv tmpdef physiq.def
895	cd ..
896
897	cp "$exe_name" "BENCH${grid_resolution}/gcm.e"
898	cd "BENCH${grid_resolution}"
899
900	if [[ ${parallel:0:3} = "mpi" ]]; then
901	# Lancement avec deux procs mpi et 2 openMP
902	echo "export OMP_STACKSIZE=800M" > bench.sh
903	if [[ "${parallel:4:3}" = "omp" ]]; then
904	echo "export OMP_NUM_THREADS=2" >> bench.sh
905	fi
906	if [[ $cosp = "v1" \|\| $cosp = "v2" ]]; then
907	echo "ulimit -s 200000" >> bench.sh
908	else
909	echo "ulimit -s unlimited" >> bench.sh
910	fi
911	if which mpirun &> /dev/null; then
912	echo "mpirun -np 2 gcm.e &> listing" >> bench.sh
913	elif grep -q "Adastra" /etc/motd; then
914	local account
915	account=$(/usr/sbin/my_project.py -l 2>&1 \| head -1 \| cut -d " " -f 3- \| cut -c 5-)
916	bench_cmd="srun --nodes=1 --ntasks=1 --cpus-per-task=2 --threads-per-core=2 --time=0:10:00 --constraint=GENOA --account=$account bash bench.sh"
917	echo "./gcm.e &> listing" >> bench.sh
918	else
919	echo "Error: No command found to run parallel bench"; exit 1
920	fi
921	if [[ $(hostname \| cut -c -6) = "spirit" ]]; then # ulimit unlimited segfaults on Spirit
922	sed -i'' "s/ulimit -s unlimited/ulimit -Ss 8000/" bench.sh
923	fi
924	# Add rebuild, using reb.sh if it is there
925	cat <<EOF >> bench.sh
926	if [[ -f reb.sh ]]; then
927	./reb.sh histday; ./reb.sh histmth; ./reb.sh histhf;
928	./reb.sh histins; ./reb.sh stomate_history;
929	./reb.sh sechiba_history; ./reb.sh sechiba_out_2
930	fi
931	EOF
932	else
933	echo "./gcm.e &> listing" > bench.sh
934	fi
935	chmod +x bench.sh
936	# Getting orchidee stuff
937	if [[ $veget = 'CMIP6' \|\| $veget = "orch2.0" ]]; then # TODO once we have a 2.2 bench, add it here (or in planned separate bench script)
938	echo 'myget 3DBenchs/BENCHCMIP6.tar.gz'
939	myget 3DBenchs/BENCHCMIP6.tar.gz
940	tar xvzf BENCHCMIP6.tar.gz
941	sed -e "s:VEGET=n:VEGET=y:" config.def > tmp
942	mv -f tmp config.def
943	if [[ $with_xios = 1 ]]; then
944	cp ../../ORCHIDEE/src_xml/context_orchidee.xml .
945	echo '<context id="orchidee" src="./context_orchidee.xml"/>' > add.tmp
946	cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml .
947	cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml .
948	cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml .
949	if [[ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ]]; then
950	cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml .
951	echo '<context id="orchidee" src="./context_input_orchidee.xml"/>' >> add.tmp
952	fi
953	sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp
954	mv tmp iodef.xml
955	sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' \
956	file_def_orchidee.xml > tmp
957	\mv -f tmp file_def_orchidee.xml
958	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
959	file_def_orchidee.xml > tmp
960	\mv -f tmp file_def_orchidee.xml
961	sed -e 's@output_level="_AUTO_"@output_level="1"@' \
962	file_def_orchidee.xml > tmp
963	\mv -f tmp file_def_orchidee.xml
964	sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' \
965	file_def_orchidee.xml > tmp
966	\mv -f tmp file_def_orchidee.xml
967	sed -e 's@compression_level="4"@compression_level="0"@' \
968	file_def_orchidee.xml > tmp
969	\mv -f tmp file_def_orchidee.xml
970	sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' \
971	orchidee.def > tmp
972	\mv -f tmp orchidee.def
973	fi
974	fi
975
976	fi
977
978	if [[ -f ../arch.env ]]; then source ../arch.env; fi
979
980	echo "STARTING BENCH"
981	date
982	if (! $bench_cmd &> out.bench) \|\| ! (tail -n 1 listing \| grep "Everything is cool"); then
983	tail listing
984	echo "Bench FAILED, exiting"; exit 1
985	fi
986	date
987	tail listing
988	fi
989
990	# 1D case
991	if [[ $SCM = 1 ]]; then
992	cd "$MODEL"
993	myget 1D/1D.tar.gz
994	tar xf 1D.tar.gz
995	cd 1D
996	for e in "fcm" "env" "path"; do
997	cp "$MODEL/modipsl/modeles/LMDZ/arch/arch-$arch.$e" "$MODEL/modipsl/modeles/LMDZ/arch/arch-local.$e"
998	done
999	if [[ $rad = "oldrad" ]]; then
1000	sed -i'' -e 's/^rad=.*$/rad=oldrad/' run.sh
1001	sed -i'' -e 's/^rad=.*$/rad=oldrad/' bin/compile
1002	elif [[ $rad = ecrad ]] ; then
1003	sed -i'' -e 's/^rad=.*$/rad=ecrad/' run.sh
1004	sed -i'' -e 's/^rad=.*$/rad=ecrad/' bin/compile
1005	fi
1006	echo "Running 1D/run.sh, log in $(pwd)/run1d.log"
1007	./run.sh &> "$(pwd)/run1d.log"
1008	fi
1009	}
1010
1011	function run_bench_icosa {
1012	local bench_cmd="./bench.sh"
1013
1014	if [[ $icolmdz = 1 ]]; then
1015	cd "$MODEL/modipsl/modeles/ICOSA_LMDZ"
1016	if [[ $bench = 1 ]]; then
1017	namebench="bench_icolmdz_nbp10_79"
1018	rm -rf $namebench
1019	myget "3DBenchs/$namebench.tar.gz"
1020	mkdir -p $namebench
1021	tar xf "$namebench.tar.gz" -C "$namebench" --strip-components=1
1022	cd $namebench
1023	# copy executables
1024	if [[ ! -x ../bin/icosa_lmdz.exe ]]; then
1025	echo "STOP in icosa_lmdz bench, icosa_lmdz.exe executable not present"; exit 1
1026	fi
1027	cp ../bin/icosa_lmdz.exe .
1028	if [[ ! -x ../../XIOS/bin/xios_server.exe ]]; then
1029	echo "STOP in icosa_lmdz bench, XIOS executable not present"; exit 1
1030	fi
1031	cp ../../XIOS/bin/xios_server.exe .
1032	echo "STARTING ICOSA_LMDZ BENCH"
1033	date
1034	if (! $bench_cmd &> out.bench) \|\| ! ( grep "Time elapsed" listing); then
1035	tail listing
1036	echo "ICOSA_LMDZ bench FAILED, exiting"; exit 1
1037	fi
1038	date
1039	echo "ICOSA_LMDZ bench finished"
1040	fi
1041	fi
1042
1043	}
1044	# If sourced: returns, else run setup
1045	if [[ ! "${BASH_SOURCE[0]}" = "$0" ]]; then return 0; fi
1046
1047	echo "install_lmdz.sh DEBUT $(date)"
1048
1049	set_default_params
1050	read_cmdline_args "$@"
1051	ensure_correct_option_combinations
1052	download_modipsl_tar
1053	get_lmdz_version
1054	get_dynamico_icosa_version
1055	get_orchidee_version
1056	init_arch
1057	check_available_software
1058	check_compiler
1059	install_netcdf
1060	install_IOIPSL
1061	install_XIOS
1062	compile_orchidee
1063	compile_lmdz
1064	compile_icolmdzor
1065	run_bench
1066	run_bench_icosa

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