| 1 | #!/bin/bash |
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| 2 | |
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| 3 | ########################################################################### |
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| 4 | # Author : Laurent Fairhead et Frédéric Hourdin |
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| 5 | # Usage : install_lmdz.sh -help |
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| 6 | # |
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| 7 | # bash installation script of the LMDZ model on different computer types : |
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| 8 | # Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS) |
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| 9 | # |
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| 10 | # The model is downloaded in the following directory tree |
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| 11 | # $MODEL/modipsl/modeles/... |
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| 12 | # using the "modipsl" infrastructure created by the "IPSL" |
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| 13 | # for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling |
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| 14 | # activities. |
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| 15 | # Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE) |
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| 16 | # components. |
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| 17 | # |
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| 18 | # The sources of the models can be found in the "modeles" directory. |
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| 19 | # In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of input-outputs |
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| 20 | # using the NetCDF library). |
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| 21 | # |
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| 22 | # The script downloads various source files (including a version of NetCDF) |
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| 23 | # and utilities, compiles the model, and runs a test simulation in a |
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| 24 | # minimal configuration. |
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| 25 | # |
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| 26 | # Prerequisites : pgf90/gfortran, bash or ksh, wget , gunzip, tar, ... |
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| 27 | # |
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| 28 | # Modif 18/11/2011 |
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| 29 | # changes for option real 8. |
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| 30 | # We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM |
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| 31 | # but with -r4 for netcdf. Variable real must be set to |
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| 32 | # r4 or r8 at the beginning of the script below. |
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| 33 | # |
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| 34 | ########################################################################### |
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| 35 | |
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| 36 | echo install.sh DEBUT `date` |
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| 37 | |
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| 38 | set -e |
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| 39 | |
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| 40 | ################################################################ |
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| 41 | # Choice of installation options |
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| 42 | ################################################################ |
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| 43 | |
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| 44 | # A function to fetch files either locally or on the internet |
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| 45 | function myget { #1st and only argument should be file name |
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| 46 | # Path on local computer where to look for the datafile |
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| 47 | if [ -f /u/lmdz/WWW/LMDZ/pub/$1 ] ; then |
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| 48 | \cp -f -p /u/lmdz/WWW/LMDZ/pub/$1 . |
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| 49 | elif [ -f ~/LMDZ/pub/$1 ] ; then |
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| 50 | \cp -f -p ~/LMDZ/pub/$1 . |
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| 51 | else |
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| 52 | wget -nv http://www.lmd.jussieu.fr/~lmdz/pub/$1 |
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| 53 | #dir=~/LMDZ/pub/`dirname $1` ; mkdir -p $dir ; cp -r `basename $1` $dir |
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| 54 | fi |
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| 55 | } |
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| 56 | |
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| 57 | # 04_2021 : tester si r4 marche encore ! |
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| 58 | #real=r4 |
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| 59 | real=r8 |
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| 60 | |
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| 61 | ######################################################################### |
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| 62 | # Valeur par défaut des parametres |
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| 63 | ######################################################################### |
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| 64 | svn="" |
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| 65 | #version=trunk |
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| 66 | version=20210730.trunk |
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| 67 | getlmdzor=1 |
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| 68 | netcdf=1 # 1 for automatic installation |
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| 69 | # 0 for no installation |
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| 70 | # /.../../netcdf-4.0.1 if wanting to link with an already |
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| 71 | # compiled netcdf library (implies to check option compatibility) |
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| 72 | check_linux=1 |
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| 73 | ioipsl=1 |
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| 74 | bench=1 |
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| 75 | pclinux=1 |
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| 76 | pcmac=0 # default: not on a Mac |
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| 77 | compiler=gfortran |
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| 78 | SCM=0 |
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| 79 | # surface/vegetation scheme treatment |
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| 80 | # controlled by the single variable veget which can have the following values |
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| 81 | # - NONE: bucket scheme (default) |
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| 82 | # - CMIP6: orchidee version used in CMIP exercise, rev 5661 |
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| 83 | # - number: orchidee version number (not yet implemented) |
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| 84 | veget=NONE |
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| 85 | # choose the resolution for the bench runs |
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| 86 | # grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE) |
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| 87 | # 96x71x19 standard configuration |
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| 88 | grid_resolution=144x142x79 |
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| 89 | grid_resolution=96x95x39 |
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| 90 | grid_resolution=48x36x19 |
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| 91 | grid_resolution=32x32x39 |
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| 92 | # choose the physiq version you want to test |
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| 93 | #physiq=NPv6.0.14splith |
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| 94 | physiq= |
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| 95 | |
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| 96 | ## parallel can take the values none/mpi/omp/mpi_omp |
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| 97 | parallel=mpi_omp |
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| 98 | parallel=none |
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| 99 | idris_acct=lmd |
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| 100 | OPT_GPROF="" |
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| 101 | OPT_MAKELMDZ="" |
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| 102 | MODEL="" |
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| 103 | |
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| 104 | ## also compile XIOS? (and more recent NetCDF/HDF5 libraries) Default=no |
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| 105 | with_xios="n" |
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| 106 | opt_makelmdz_xios="" |
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| 107 | |
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| 108 | ## compile with old/rrtm/ecrad radiatif code (Default=rrtm) |
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| 109 | rad=rrtm |
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| 110 | |
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| 111 | ## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0) |
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| 112 | compile_with_fcm=1 |
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| 113 | |
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| 114 | #Compilation with Cosp (cosp=NONE/v1/v2 ; default=NONE) |
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| 115 | cosp=NONE |
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| 116 | opt_cosp="" |
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| 117 | |
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| 118 | # Check if on a Mac |
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| 119 | if [ `uname` = "Darwin" ] |
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| 120 | then |
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| 121 | pcmac=1 |
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| 122 | export MAKE=make |
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| 123 | fi |
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| 124 | #echo "pcmac="$pcmac |
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| 125 | |
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| 126 | env_file="" |
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| 127 | |
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| 128 | ######################################################################### |
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| 129 | # Options interactives |
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| 130 | ######################################################################### |
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| 131 | while (($# > 0)) |
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| 132 | do |
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| 133 | case $1 in |
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| 134 | "-h") cat <<........fin |
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| 135 | $0 [ -v version ] [ -r svn_release ] |
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| 136 | [ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ] |
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| 137 | [-name LOCAL_MODEL_NAME] [-gprof] [-opt_makelmdz] [-rad RADIATIF] |
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| 138 | |
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| 139 | -v "version" like 20150828.trunk |
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| 140 | see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk |
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| 141 | |
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| 142 | -r "svn_release" : either the svn release number or "last" |
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| 143 | |
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| 144 | -compiler gfortran|ifort|pgf90 (default: gfortran) |
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| 145 | |
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| 146 | -parallel PARA : can be mpi_omp (mpi with openMP) or none (for sequential) |
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| 147 | |
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| 148 | -d GRID_RESOLUTION should be among the available benchs if -bench 1 |
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| 149 | among which : 48x36x19, 48x36x39 |
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| 150 | if wanting to run a bench simulation in addition to compilation |
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| 151 | default : 48x36x19 |
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| 152 | |
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| 153 | -bench activating the bench or not (0/1). Default 1 |
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| 154 | |
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| 155 | -name LOCAL_MODEL_NAME : default = LMDZversion.release |
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| 156 | |
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| 157 | -netcdf PATH : full path to an existing installed NetCDF library |
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| 158 | (without -netcdf: also download and install the NetCDF library) |
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| 159 | |
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| 160 | -xios also download and compile the XIOS library |
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| 161 | (requires the NetCDF4-HDF5 library, also installed by default) |
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| 162 | (requires to also have -parallel mpi_omp) |
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| 163 | |
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| 164 | -gprof to compile with -pg to enable profiling with gprof |
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| 165 | |
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| 166 | -cosp to run without our with cospv1 or cospv2 [none/v1/v2] |
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| 167 | |
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| 168 | -rad RADIATIF can be old, rrtm or ecrad radiatif code |
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| 169 | |
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| 170 | -nofcm to compile without fcm |
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| 171 | |
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| 172 | -SCM install 1D version automatically |
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| 173 | |
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| 174 | -debug compile everything in debug mode |
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| 175 | |
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| 176 | -opt_makelmdz to call makelmdz or makelmdz_fcm with additional options |
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| 177 | |
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| 178 | -physiq to choose which physics package to use |
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| 179 | |
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| 180 | -env_file specify an arch.env file to overwrite the existing one |
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| 181 | |
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| 182 | -veget surface model to run [NONE/CMIP6/xxxx] |
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| 183 | |
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| 184 | ........fin |
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| 185 | exit ;; |
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| 186 | "-v") version=$2 ; shift ; shift ;; |
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| 187 | "-r") svn=$2 ; shift ; shift ;; |
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| 188 | "-compiler") compiler=$2 |
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| 189 | case $compiler in |
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| 190 | "gfortran"|"ifort"|"pgf90") compiler=$2 ; shift ; shift ;; |
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| 191 | *) echo "Only gfortran , ifort or pgf90 for the compiler option" ; exit |
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| 192 | esac ;; |
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| 193 | "-d") grid_resolution=$2 ; shift ; shift ;; |
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| 194 | "-gprof") OPT_GPROF="-pg" ; shift ;; |
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| 195 | "-cosp") cosp=$2 |
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| 196 | case $cosp in |
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| 197 | "none"|"v1"|"v2") cosp=$2 ; shift ; shift ;; |
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| 198 | *) echo Only none v1 v2 for cosp option ; exit |
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| 199 | esac ;; |
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| 200 | "-nofcm") compile_with_fcm=0 ; shift ;; |
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| 201 | "-SCM") SCM=1 ; shift ;; |
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| 202 | "-opt_makelmdz") OPT_MAKELMDZ="$2" ; shift ; shift ;; |
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| 203 | "-rad") rad=$2 |
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| 204 | case $rad in |
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| 205 | "old"|"rrtm"|"ecrad") rad=$2 ; shift ; shift ;; |
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| 206 | *) echo Only old rrtm ecrad for rad option ; exit |
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| 207 | esac ;; |
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| 208 | "-parallel") parallel=$2 |
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| 209 | case $parallel in |
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| 210 | "none"|"mpi"|"omp"|"mpi_omp") parallel=$2 ; shift ; shift ;; |
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| 211 | *) echo Only none mpi omp mpi_omp for the parallel option ; exit |
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| 212 | esac ;; |
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| 213 | "-bench") bench=$2 ; shift ; shift ;; |
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| 214 | "-debug") optim=-debug ; shift ;; |
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| 215 | "-name") MODEL=$2 ; shift ; shift ;; |
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| 216 | "-netcdf") netcdf=$2 ; shift ; shift ;; |
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| 217 | "-physiq") physiq=$2 ; shift ; shift ;; |
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| 218 | "-xios") with_xios="y" ; shift ;; |
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| 219 | "-env_file") env_file=$2 ; shift ; shift ;; |
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| 220 | "-veget") veget=$2 ; shift ; shift ;; |
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| 221 | *) ./install_lmdz.sh -h ; exit |
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| 222 | esac |
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| 223 | done |
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| 224 | |
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| 225 | #Option de compilation en fonction du code radiatif (-rad rrtm/ecrad) |
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| 226 | if [ $rad = rrtm ] ; then |
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| 227 | opt_rad="-rad rrtm" |
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| 228 | elif [ $rad = ecrad ] ; then |
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| 229 | opt_rad="-rad ecrad" |
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| 230 | else |
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| 231 | opt_rad="" |
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| 232 | fi |
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| 233 | |
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| 234 | if [ $cosp = v1 ] ; then |
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| 235 | opt_cosp="-cosp true" |
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| 236 | elif [ $cosp = v2 ] ; then |
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| 237 | opt_cosp="-cospv2 true" |
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| 238 | else |
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| 239 | opt_cosp="" |
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| 240 | fi |
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| 241 | |
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| 242 | # Check on veget version |
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| 243 | #if [ "$veget" != 'NONE' -a "$veget" != "CMIP6" -a "$veget" != +([0-9]) ] ; then |
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| 244 | if [ $veget != 'NONE' -a $veget != "CMIP6" ] ; then |
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| 245 | re='^[0-9]+$' |
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| 246 | if ! [[ $veget =~ $re ]] ; then |
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| 247 | echo 'Valeur de l option veget non valable' |
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| 248 | exit |
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| 249 | fi |
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| 250 | fi |
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| 251 | |
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| 252 | #Define veget-related suffix for gcm name |
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| 253 | if [ "$veget" = 'NONE' ] ; then |
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| 254 | suff_orc='' |
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| 255 | #For use with tutorial, orchidee_rev is also defined (will be written in surface_env at the end of the script) |
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| 256 | orchidee_rev='' |
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| 257 | else |
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| 258 | suff_orc='_orch' |
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| 259 | fi |
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| 260 | |
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| 261 | |
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| 262 | if [ $parallel = none ] ; then sequential=1; suff_exe='_seq' ; else sequential=0; suff_exe='_para_mem' ; fi |
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| 263 | |
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| 264 | #Chemin pour placer le modele |
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| 265 | if [ "$MODEL" = "" ] ; then MODEL=./LMDZ$version$svn$optim ; fi |
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| 266 | |
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| 267 | |
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| 268 | arch=local |
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| 269 | |
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| 270 | |
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| 271 | if [ $compiler = g95 ] ; then echo g95 is not supported anymore ; exit ; fi |
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| 272 | |
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| 273 | ################################################################ |
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| 274 | # Specificite des machines |
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| 275 | ################################################################ |
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| 276 | |
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| 277 | hostname=`hostname` |
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| 278 | if [ "$pclinux" = 1 ] ; then o_ins_make="-t g95" ; else o_ins_make="" ; fi |
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| 279 | |
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| 280 | case ${hostname:0:5} in |
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| 281 | |
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| 282 | jean-) compiler="mpiifort" ; |
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| 283 | par_comp="mpiifort" ; |
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| 284 | o_ins_make="-t jeanzay" ; |
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| 285 | make=gmake ; |
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| 286 | module purge |
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| 287 | module load intel-compilers/19.0.4 ; |
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| 288 | #module load intel-mpi/19.0.4 ; |
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| 289 | #module load intel-mkl/19.0.4 ; |
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| 290 | module load hdf5/1.10.5-mpi ; |
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| 291 | module load netcdf/4.7.2-mpi ; |
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| 292 | module load netcdf-fortran/4.5.2-mpi ; |
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| 293 | module load subversion/1.9.7 ; |
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| 294 | export NETCDF_LIBDIR=./ |
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| 295 | export NETCDFFORTRAN_INCDIR=./ |
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| 296 | export NETCDFFORTRAN_LIBDIR=./ |
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| 297 | arch=X64_JEANZAY ;; |
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| 298 | |
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| 299 | cicla|camel) compiler="gfortran" ; |
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| 300 | if [ $parallel != none ] ; then |
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| 301 | module load openmpi/1.6.5-gfortran ; |
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| 302 | root_mpi=$MPI_HOME ; |
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| 303 | path_mpi=$root_mpi/bin ; |
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| 304 | par_comp=${path_mpi}/mpif90 ; |
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| 305 | mpirun=${path_mpi}/mpirun ; |
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| 306 | fi ; |
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| 307 | arch=local ; |
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| 308 | make=make ; |
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| 309 | o_ins_make="-t g95" ;; |
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| 310 | |
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| 311 | *) if [ $parallel = none -o -f /usr/bin/mpif90 ] ; then |
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| 312 | path_mpi=`which mpif90 | sed -e s:/mpif90::` ; |
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| 313 | if [ -d /usr/lib64/openmpi ] ; then |
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| 314 | root_mpi="/usr/lib64/openmpi" |
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| 315 | else |
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| 316 | root_mpi="/usr" |
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| 317 | fi |
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| 318 | # For Scientifique Linux with gfortran at LMD : |
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| 319 | elif [ -f /usr/lib64/openmpi/1.4.5-gfortran/bin/mpif90 -a $compiler = "gfortran" ] ; then |
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| 320 | path_mpi=/usr/lib64/openmpi/1.4.5-gfortran/bin ; |
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| 321 | root_mpi=/usr/lib64/openmpi/1.4.5-gfortran ; |
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| 322 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
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| 323 | # For Scientifique Linux with ifort at LMD : |
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| 324 | elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a $compiler = "ifort" ] ; then |
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| 325 | path_mpi=/usr/lib64/openmpi/1.4.5-ifort/bin ; |
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| 326 | root_mpi=/usr/lib64/openmpi/1.4.5-ifort ; |
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| 327 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
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| 328 | # For Scientifique Linux with pgf90 at LMD : |
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| 329 | elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a $compiler = "pgf90" ] ; then |
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| 330 | path_mpi=/usr/lib64/openmpi/1.4.5-pgf/bin ; |
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| 331 | root_mpi=/usr/lib64/openmpi/1.4.5-pgf ; |
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| 332 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
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| 333 | else |
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| 334 | echo "Cannot find mpif90" ; |
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| 335 | if [ $parallel = none ] ; then exit ; fi ; |
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| 336 | fi ; |
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| 337 | par_comp=${path_mpi}/mpif90 ; |
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| 338 | mpirun=${path_mpi}/mpirun ; |
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| 339 | arch=local ; |
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| 340 | make=make ; |
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| 341 | o_ins_make="-t g95" |
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| 342 | esac |
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| 343 | |
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| 344 | # Flags for parallelism: |
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| 345 | if [ $parallel != none ] ; then |
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| 346 | # MPI_LD are the flags needed for linking with MPI |
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| 347 | MPI_LD="-L${root_mpi}/lib -lmpi" |
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| 348 | if [ "$compiler" = "gfortran" ] ; then |
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| 349 | # MPI_FLAGS are the flags needed for compilation with MPI |
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| 350 | MPI_FLAGS="-fcray-pointer" |
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| 351 | # OMP_FLAGS are the flags needed for compilation with OpenMP |
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| 352 | OMP_FLAGS="-fopenmp -fcray-pointer" |
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| 353 | # OMP_LD are the flags needed for linking with OpenMP |
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| 354 | OMP_LD="-fopenmp" |
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| 355 | elif [ "$compiler" = "ifort" ] ; then |
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| 356 | MPI_FLAGS="" |
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| 357 | OMP_FLAGS="-openmp" |
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| 358 | OMP_LD="-openmp" |
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| 359 | else # pgf90 |
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| 360 | MPI_FLAGS="" |
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| 361 | OMP_FLAGS="-mp" |
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| 362 | OMP_LD="-mp" |
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| 363 | fi |
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| 364 | fi |
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| 365 | |
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| 366 | ##################################################################### |
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| 367 | # Test for old gfortran compilers |
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| 368 | # If the compiler is too old (older than 4.3.x) we test if the |
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| 369 | # temporary gfortran44 patch is available on the computer in which |
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| 370 | # case the compiler is changed from gfortran to gfortran44 |
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| 371 | # Must be aware than parallelism can not be activated in this case |
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| 372 | ##################################################################### |
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| 373 | |
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| 374 | if [ "$compiler" = "gfortran" ] ; then |
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| 375 | gfortran=gfortran |
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| 376 | gfortranv=`gfortran --version | \ |
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| 377 | head -1 | awk ' { print $NF } ' | awk -F. ' { print $1 * 10 + $2 } '` |
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| 378 | if [ $gfortranv -le 43 ] ; then |
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| 379 | echo ERROR : Your gfortran compiler is too old |
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| 380 | echo 'Please choose a new one (ifort) and change the line' |
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| 381 | echo compiler=xxx |
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| 382 | echo in the install.sh script and rerun it |
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| 383 | if [ `which gfortran44 | wc -w` -ne 0 ] ; then |
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| 384 | gfortran=gfortran44 |
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| 385 | else |
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| 386 | echo gfotran trop vieux ; exit |
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| 387 | fi |
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| 388 | fi |
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| 389 | compiler=$gfortran |
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| 390 | fi |
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| 391 | ##################################################################### |
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| 392 | |
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| 393 | ## if also compiling XIOS, parallel must be mpi_omp |
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| 394 | if [ "$with_xios" = "y" -a "$parallel" != "mpi_omp" ] ; then |
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| 395 | echo "Error, you must set -parallel mpi_omp if you want XIOS" |
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| 396 | exit |
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| 397 | fi |
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| 398 | |
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| 399 | if [ "$with_xios" = "y" ] ; then |
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| 400 | opt_makelmdz_xios="-io xios" |
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| 401 | fi |
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| 402 | |
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| 403 | if [ "$cosp" = "v2" -a "$with_xios" = "n" ] ; then |
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| 404 | echo "Error, Cospv2 cannot run without Xios" |
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| 405 | exit |
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| 406 | fi |
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| 407 | |
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| 408 | echo '################################################################' |
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| 409 | echo Choix des options de compilation |
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| 410 | echo '################################################################' |
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| 411 | |
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| 412 | export FC=$compiler |
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| 413 | export F90=$compiler |
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| 414 | export F77=$compiler |
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| 415 | export CPPFLAGS= |
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| 416 | OPTIMNC=$OPTIM |
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| 417 | BASE_LD="$OPT_GPROF" |
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| 418 | OPTPREC="$OPT_GPROF" |
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| 419 | ARFLAGS="rs" ; if [ -f /etc/issue ] ; then if [ "`grep -i ubuntu /etc/issue`" != "" ] ; then if [ "`grep -i ubuntu /etc/issue | awk ' { print $2 } ' | cut -d. -f1`" -ge 16 ] ; then ARFLAGS="rU" ; fi ; fi ; fi |
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| 420 | |
|---|
| 421 | |
|---|
| 422 | |
|---|
| 423 | if [ "$compiler" = "$gfortran" ] ; then |
|---|
| 424 | OPTIM='-O3' |
|---|
| 425 | OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -fbacktrace -finit-real=nan" |
|---|
| 426 | OPTDEV="-Wall -fbounds-check" |
|---|
| 427 | fmod='I ' |
|---|
| 428 | OPTPREC="$OPTPREC -cpp -ffree-line-length-0" |
|---|
| 429 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE" ; fi |
|---|
| 430 | export F90FLAGS=" -ffree-form $OPTIMNC" |
|---|
| 431 | export FFLAGS=" $OPTIMNC" |
|---|
| 432 | export CC=gcc |
|---|
| 433 | export CXX=g++ |
|---|
| 434 | export fpp_flags="-P -C -traditional -ffreestanding" |
|---|
| 435 | |
|---|
| 436 | elif [ $compiler = mpif90 ] ; then |
|---|
| 437 | OPTIM='-O3' |
|---|
| 438 | OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all" |
|---|
| 439 | OPTDEV="-Wall -fbounds-check" |
|---|
| 440 | BASE_LD="$BASE_LD -lblas" |
|---|
| 441 | fmod='I ' |
|---|
| 442 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE -fcray-pointer" ; fi |
|---|
| 443 | export F90FLAGS=" -ffree-form $OPTIMNC" |
|---|
| 444 | export FFLAGS=" $OPTIMNC" |
|---|
| 445 | export CC=gcc |
|---|
| 446 | export CXX=g++ |
|---|
| 447 | |
|---|
| 448 | elif [ $compiler = pgf90 ] ; then |
|---|
| 449 | OPTIM='-O2 -Mipa -Munroll -Mnoframe -Mautoinline -Mcache_align' |
|---|
| 450 | OPTDEB='-g -Mdclchk -Mbounds -Mchkfpstk -Mchkptr -Minform=inform -Mstandard -Ktrap=fp -traceback' |
|---|
| 451 | OPTDEV='-g -Mbounds -Ktrap=fp -traceback' |
|---|
| 452 | fmod='module ' |
|---|
| 453 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -r8 -DNC_DOUBLE" ; fi |
|---|
| 454 | export CPPFLAGS="-DpgiFortran" |
|---|
| 455 | export CC=pgcc |
|---|
| 456 | export CFLAGS="-O2 -Msignextend" |
|---|
| 457 | export CXX=pgCC |
|---|
| 458 | export CXXFLAGS="-O2 -Msignextend" |
|---|
| 459 | export FFLAGS="-O2 $OPTIMNC" |
|---|
| 460 | export F90FLAGS="-O2 $OPTIMNC" |
|---|
| 461 | compile_with_fcm=1 |
|---|
| 462 | |
|---|
| 463 | elif [ $compiler = ifort ] ; then |
|---|
| 464 | OPTIM="-O2 -fp-model strict -ip -align all " |
|---|
| 465 | OPTDEV="-p -g -O2 -traceback -fp-stack-check -ftrapuv -check" |
|---|
| 466 | OPTDEB="-g -no-ftz -traceback -ftrapuv -fp-stack-check -check" |
|---|
| 467 | fmod='module ' |
|---|
| 468 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi |
|---|
| 469 | export CPP="icc -E" |
|---|
| 470 | export FFLAGS="-O2 -ip -fpic -mcmodel=large" |
|---|
| 471 | export FCFLAGS="-O2 -ip -fpic -mcmodel=large" |
|---|
| 472 | export CC=icc |
|---|
| 473 | export CFLAGS="-O2 -ip -fpic -mcmodel=large" |
|---|
| 474 | export CXX=icpc |
|---|
| 475 | export CXXFLAGS="-O2 -ip -fpic -mcmodel=large" |
|---|
| 476 | export fpp_flags="-P -traditional" |
|---|
| 477 | # Pourquoi forcer la compilation fcm. Marche mieux sans |
|---|
| 478 | #compile_with_fcm=1 |
|---|
| 479 | |
|---|
| 480 | elif [ $compiler = mpiifort ] ; then |
|---|
| 481 | echo on ne fait rien la |
|---|
| 482 | # Pourquoi forcer la compilation fcm. Marche mieux sans |
|---|
| 483 | #compile_with_fcm=1 |
|---|
| 484 | |
|---|
| 485 | else |
|---|
| 486 | echo unexpected compiler $compiler ; exit |
|---|
| 487 | fi |
|---|
| 488 | |
|---|
| 489 | OPTIMGCM="$OPTIM $OPTPREC" |
|---|
| 490 | |
|---|
| 491 | hostname=`hostname` |
|---|
| 492 | |
|---|
| 493 | ########################################################################## |
|---|
| 494 | # If installing on known machines such as Jean-Zay at IDRIS, |
|---|
| 495 | # don't check for available software and don't install netcdf |
|---|
| 496 | if [ ${hostname:0:5} = jean- ] ; then |
|---|
| 497 | netcdf=0 # no need to recompile netcdf, alreday available |
|---|
| 498 | check_linux=0 |
|---|
| 499 | pclinux=0 |
|---|
| 500 | ioipsl=0 # no need to recompile ioipsl, already available |
|---|
| 501 | #netcdf="/smplocal/pub/NetCDF/4.1.3" |
|---|
| 502 | compiler="mpiifort" |
|---|
| 503 | fmod='module ' |
|---|
| 504 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -i4 -r8 -DNC_DOUBLE" ; fi |
|---|
| 505 | OPTIM="-auto -align all -O2 -fp-model strict -xHost " |
|---|
| 506 | OPTIMGCM="$OPTIM $OPTPREC" |
|---|
| 507 | fi |
|---|
| 508 | ########################################################################## |
|---|
| 509 | |
|---|
| 510 | |
|---|
| 511 | mkdir -p $MODEL |
|---|
| 512 | echo $MODEL |
|---|
| 513 | MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary |
|---|
| 514 | |
|---|
| 515 | |
|---|
| 516 | echo '################################################################' |
|---|
| 517 | if [ "$check_linux" = 1 ] ; then |
|---|
| 518 | echo Check if required software is available |
|---|
| 519 | echo '################################################################' |
|---|
| 520 | |
|---|
| 521 | #### Ehouarn: test if the required shell is available |
|---|
| 522 | #### Maj FH-LF-AS 2021-04 : default=bash ; if bash missing, use ksh |
|---|
| 523 | use_shell="bash" # default |
|---|
| 524 | if [ "`which bash`" = "" ] ; then |
|---|
| 525 | echo "no bash ; we will use ksh" |
|---|
| 526 | use_shell="ksh" |
|---|
| 527 | if [ "`which ksh`" = "" ] ; then |
|---|
| 528 | echo "bash (or ksh) needed!! Install it!" |
|---|
| 529 | exit |
|---|
| 530 | fi |
|---|
| 531 | fi |
|---|
| 532 | |
|---|
| 533 | for logiciel in wget tar gzip make $compiler gcc ; do |
|---|
| 534 | if [ "`which $logiciel`" = "" ] ; then |
|---|
| 535 | echo You must first install $logiciel on your system |
|---|
| 536 | exit |
|---|
| 537 | fi |
|---|
| 538 | done |
|---|
| 539 | |
|---|
| 540 | if [ $pclinux = 1 ] ; then |
|---|
| 541 | cd $MODEL |
|---|
| 542 | cat <<eod > tt.f90 |
|---|
| 543 | print*,'coucou' |
|---|
| 544 | end |
|---|
| 545 | eod |
|---|
| 546 | $compiler tt.f90 -o a.out |
|---|
| 547 | ./a.out >| tt |
|---|
| 548 | if [ "`cat tt | sed -e 's/ //g' `" != "coucou" ] ; then |
|---|
| 549 | echo problem installing with compiler $compiler ; exit ; fi |
|---|
| 550 | \rm tt a.out tt.f90 |
|---|
| 551 | fi |
|---|
| 552 | fi |
|---|
| 553 | |
|---|
| 554 | ########################################################################### |
|---|
| 555 | if [ $getlmdzor = 1 ] ; then |
|---|
| 556 | echo '##########################################################' |
|---|
| 557 | echo Download a slightly modified version of LMDZ |
|---|
| 558 | echo '##########################################################' |
|---|
| 559 | cd $MODEL |
|---|
| 560 | myget src/modipsl_orc_cmip6.$version.tar.gz |
|---|
| 561 | echo install.sh wget_OK `date` |
|---|
| 562 | gunzip modipsl_orc_cmip6.$version.tar.gz |
|---|
| 563 | tar xvf modipsl_orc_cmip6.$version.tar |
|---|
| 564 | \rm modipsl_orc_cmip6.$version.tar |
|---|
| 565 | fi |
|---|
| 566 | |
|---|
| 567 | echo OK1 |
|---|
| 568 | |
|---|
| 569 | if [ $netcdf = 1 ] ; then |
|---|
| 570 | cd $MODEL |
|---|
| 571 | netcdflog=`pwd`/netcdf.log |
|---|
| 572 | echo '##########################################################' |
|---|
| 573 | echo Compiling the Netcdf library |
|---|
| 574 | echo '##########################################################' |
|---|
| 575 | echo log file : $netcdflog |
|---|
| 576 | if [ "$with_xios" = "n" ] ; then |
|---|
| 577 | # keep it simple |
|---|
| 578 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/netcdf-4.0.1.tar.gz |
|---|
| 579 | myget import/netcdf-4.0.1.tar.gz |
|---|
| 580 | gunzip netcdf-4.0.1.tar.gz |
|---|
| 581 | tar xvf netcdf-4.0.1.tar |
|---|
| 582 | \rm -f netcdf-4.0.1.tar |
|---|
| 583 | |
|---|
| 584 | cd netcdf-4.0.1 |
|---|
| 585 | |
|---|
| 586 | localdir=`pwd -P` |
|---|
| 587 | ./configure --prefix=$localdir --enable-shared --disable-cxx |
|---|
| 588 | #sed -e 's/gfortran/'$gfortran'/g' Makefile >| tmp ; mv -f tmp Makefile |
|---|
| 589 | $make check > $netcdflog 2>&1 |
|---|
| 590 | $make install >> $netcdflog 2>&1 |
|---|
| 591 | #LF rajout d'une verrue, pour une raison non encore expliquee, la librairie est parfois rangée dans lib64 |
|---|
| 592 | # et non dans lib par certains compilateurs |
|---|
| 593 | if [ ! -e lib -a -d lib64 ] ; then ln -s lib64 lib; fi |
|---|
| 594 | else |
|---|
| 595 | # download and compile hdf5 and netcdf, etc. using the install_netcdf4_hdf5.bash script |
|---|
| 596 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_netcdf4_hdf5.bash |
|---|
| 597 | myget import/install_netcdf4_hdf5.bash |
|---|
| 598 | chmod u=rwx install_netcdf4_hdf5.bash |
|---|
| 599 | if [ "$compiler" = "gfortran" ] ; then |
|---|
| 600 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC gcc -FC gfortran -CXX g++ -MPI $root_mpi > $netcdflog 2>&1 |
|---|
| 601 | elif [ "$compiler" = "ifort" ] ; then |
|---|
| 602 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC icc -FC ifort -CXX icpc -MPI $root_mpi > $netcdflog 2>&1 |
|---|
| 603 | elif [ "$compiler" = "pgf90" ] ; then |
|---|
| 604 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC pgcc -FC pgf90 -CXX pgCC -MPI $root_mpi > $netcdflog 2>&1 |
|---|
| 605 | else |
|---|
| 606 | echo "unexpected compiler $compiler" ; exit |
|---|
| 607 | fi |
|---|
| 608 | fi # of if [ "$with_xios" = "n" ] |
|---|
| 609 | echo install.sh netcdf_OK `date` |
|---|
| 610 | fi # of if [ $netcdf = 1 ] |
|---|
| 611 | |
|---|
| 612 | #====================================================================================== |
|---|
| 613 | echo OK2 ioipsl=$ioipsl |
|---|
| 614 | echo '##########################################################' |
|---|
| 615 | echo 'Installing MODIPSL, the installation package manager for the ' |
|---|
| 616 | echo 'IPSL models and tools' |
|---|
| 617 | echo '##########################################################' |
|---|
| 618 | |
|---|
| 619 | if [ $netcdf = 0 -o $netcdf = 1 ] ; then |
|---|
| 620 | if [ "$with_xios" = "y" ] ; then |
|---|
| 621 | ncdfdir=$MODEL/netcdf4_hdf5 |
|---|
| 622 | else |
|---|
| 623 | ncdfdir=$MODEL/netcdf-4.0.1 |
|---|
| 624 | fi |
|---|
| 625 | else |
|---|
| 626 | ncdfdir=$netcdf |
|---|
| 627 | fi |
|---|
| 628 | |
|---|
| 629 | if [ $ioipsl = 1 ] ; then |
|---|
| 630 | cd $MODEL/modipsl |
|---|
| 631 | \rm -rf lib/* |
|---|
| 632 | |
|---|
| 633 | cd util |
|---|
| 634 | |
|---|
| 635 | cp AA_make.gdef AA_make.orig |
|---|
| 636 | F_C="$compiler -c " ; if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then F_C="$compiler -c -cpp " ; fi |
|---|
| 637 | if [ "$compiler" = "pgf90" ] ; then F_C="$compiler -c -Mpreprocess" ; fi |
|---|
| 638 | sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp |
|---|
| 639 | sed -e "s:F_L = g95:F_L = $compiler:" -e "s:F_C = g95 -c -cpp:F_C = $F_C": \ |
|---|
| 640 | -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ |
|---|
| 641 | -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= '"$ncdfdir"'/include:' \ |
|---|
| 642 | -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdff -lnetcdf:' \ |
|---|
| 643 | -e 's:g95 L_O =:g95 L_O = -Wl,-rpath='"$ncdfdir"'/lib:' \ |
|---|
| 644 | -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ |
|---|
| 645 | -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ |
|---|
| 646 | tmp >| AA_make.gdef |
|---|
| 647 | |
|---|
| 648 | if [ $pcmac == 1 ] |
|---|
| 649 | then |
|---|
| 650 | cp AA_make.gdef tmp |
|---|
| 651 | sed -e 's/rpath=/rpath,/g' tmp > AA_make.gdef |
|---|
| 652 | fi |
|---|
| 653 | |
|---|
| 654 | |
|---|
| 655 | # We use lines for g95 even for the other compilers to run ins_make |
|---|
| 656 | if [ "$use_shell" = "ksh" ] ; then |
|---|
| 657 | ./ins_make $o_ins_make |
|---|
| 658 | else # bash |
|---|
| 659 | sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash |
|---|
| 660 | #if [ "`grep ada AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar |
|---|
| 661 | # \cp -f ~rdzt401/bin/AA_make.gdef . |
|---|
| 662 | #fi |
|---|
| 663 | if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar |
|---|
| 664 | echo 'Warning jean-zay not in AA_make.gdef' |
|---|
| 665 | echo 'Think about updating' |
|---|
| 666 | exit 1 |
|---|
| 667 | fi |
|---|
| 668 | |
|---|
| 669 | chmod u=rwx ins_make.bash |
|---|
| 670 | ./ins_make.bash $o_ins_make |
|---|
| 671 | fi # of if [ "$use_shell" = "ksh" ] |
|---|
| 672 | |
|---|
| 673 | #======================================================================================= |
|---|
| 674 | cd $MODEL/modipsl/modeles/IOIPSL/src |
|---|
| 675 | ioipsllog=`pwd`/ioipsl.log |
|---|
| 676 | echo '##########################################################' |
|---|
| 677 | echo 'Compiling IOIPSL, the interface library with Netcdf' |
|---|
| 678 | echo '##########################################################' |
|---|
| 679 | echo log file : $ioipsllog |
|---|
| 680 | |
|---|
| 681 | if [ "$use_shell" = "bash" ] ; then |
|---|
| 682 | cp Makefile Makefile.ksh |
|---|
| 683 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
|---|
| 684 | fi |
|---|
| 685 | # if [ "$pclinux" = 1 ] ; then |
|---|
| 686 | # Build IOIPSL modules and library |
|---|
| 687 | $make clean |
|---|
| 688 | $make > $ioipsllog 2>&1 |
|---|
| 689 | if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then # copy module files to lib |
|---|
| 690 | cp -f *.mod ../../../lib |
|---|
| 691 | fi |
|---|
| 692 | # Build IOIPSL tools (ie: "rebuild", if present) |
|---|
| 693 | if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then |
|---|
| 694 | cd $MODEL/modipsl/modeles/IOIPSL/tools |
|---|
| 695 | # adapt Makefile & rebuild script if in bash |
|---|
| 696 | if [ "$use_shell" = "bash" ] ; then |
|---|
| 697 | cp Makefile Makefile.ksh |
|---|
| 698 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
|---|
| 699 | cp rebuild rebuild.ksh |
|---|
| 700 | sed -e 's:/bin/ksh:/bin/bash:g' \ |
|---|
| 701 | -e 's:print -u2:echo:g' \ |
|---|
| 702 | -e 's:print:echo:g' rebuild.ksh > rebuild |
|---|
| 703 | fi |
|---|
| 704 | $make clean |
|---|
| 705 | $make > $ioipsllog 2>&1 |
|---|
| 706 | fi |
|---|
| 707 | # fi # of if [ "$pclinux" = 1 ] |
|---|
| 708 | |
|---|
| 709 | else # of if [ $ioipsl = 1 ] |
|---|
| 710 | if [ ${hostname:0:5} = jean- ] ; then |
|---|
| 711 | cd $MODEL/modipsl |
|---|
| 712 | cd util |
|---|
| 713 | if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then |
|---|
| 714 | echo 'Warning jean-zay not in AA_make.gdef' |
|---|
| 715 | echo 'Think about updating' |
|---|
| 716 | exit 1 |
|---|
| 717 | fi |
|---|
| 718 | ./ins_make $o_ins_make |
|---|
| 719 | # Compile IOIPSL on jean-zay |
|---|
| 720 | cd $MODEL/modipsl/modeles/IOIPSL/src |
|---|
| 721 | gmake > ioipsl.log |
|---|
| 722 | cd $MODEL/modipsl/modeles/IOIPSL/tools |
|---|
| 723 | gmake > ioipsl.log |
|---|
| 724 | |
|---|
| 725 | fi |
|---|
| 726 | echo install.sh ioipsl_OK `date` |
|---|
| 727 | fi # of if [ $ioipsl = 1 ] |
|---|
| 728 | # Saving ioipsl lib for possible parallel compile |
|---|
| 729 | cd $MODEL/modipsl |
|---|
| 730 | tar cf ioipsl.tar lib/ bin/ |
|---|
| 731 | |
|---|
| 732 | #=========================================================================== |
|---|
| 733 | if [ "$with_xios" = "y" ] ; then |
|---|
| 734 | echo '##########################################################' |
|---|
| 735 | echo 'Compiling XIOS' |
|---|
| 736 | echo '##########################################################' |
|---|
| 737 | cd $MODEL/modipsl/modeles |
|---|
| 738 | xioslog=`pwd`/xios.log |
|---|
| 739 | echo "log file: $xioslog" |
|---|
| 740 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash |
|---|
| 741 | myget import/install_xios.bash |
|---|
| 742 | chmod u=rwx install_xios.bash |
|---|
| 743 | if [ ${hostname:0:5} = jean- ] ; then |
|---|
| 744 | # echo 'Need to work on install_xios implementation for jean-zay' |
|---|
| 745 | # exit |
|---|
| 746 | svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-2.5 XIOS |
|---|
| 747 | cd XIOS/arch |
|---|
| 748 | svn update |
|---|
| 749 | cd .. |
|---|
| 750 | ./make_xios --prod --arch $arch --job 4 > xios.log 2>&1 |
|---|
| 751 | else |
|---|
| 752 | ./install_xios.bash -prefix $MODEL/modipsl/modeles \ |
|---|
| 753 | -netcdf ${ncdfdir} -hdf5 ${ncdfdir} \ |
|---|
| 754 | -MPI $root_mpi -arch $arch > xios.log 2>&1 |
|---|
| 755 | fi |
|---|
| 756 | if [ -f XIOS/lib/libxios.a ] ; then |
|---|
| 757 | echo "OK, XIOS library successfully generated" |
|---|
| 758 | fi |
|---|
| 759 | fi |
|---|
| 760 | |
|---|
| 761 | #============================================================================ |
|---|
| 762 | veget_version=false |
|---|
| 763 | if [ "$veget" != 'NONE' ] ; then |
|---|
| 764 | cd $MODEL/modipsl/modeles/ORCHIDEE |
|---|
| 765 | set +e ; svn upgrade ; set -e |
|---|
| 766 | if [ "$veget" = "CMIP6" ] ; then |
|---|
| 767 | veget_version=orchidee2.0 |
|---|
| 768 | orchidee_rev=6592 |
|---|
| 769 | else # specific orchidee revision newer than CMIP6, on 2_1 or 2_2 branches |
|---|
| 770 | veget_version=orchidee2.1 |
|---|
| 771 | orchidee_rev=$veget |
|---|
| 772 | if [ $veget -lt 4465 ] ; then |
|---|
| 773 | echo 'Stopping, ORCHIDEE version too old, script needs work on the CPP flags to pass to makelmdz' |
|---|
| 774 | exit 1 |
|---|
| 775 | fi |
|---|
| 776 | set +e |
|---|
| 777 | # which branch is my version on? |
|---|
| 778 | orcbranch=`svn log -v -q svn://forge.ipsl.jussieu.fr/orchidee/ -r $veget |grep ORCHIDEE |head -1| sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' | awk '{print $2}'` |
|---|
| 779 | # switch to that branch |
|---|
| 780 | svn switch -r $veget --accept theirs-full svn://forge.ipsl.jussieu.fr/orchidee/$orcbranch |
|---|
| 781 | svn log -r $veget | grep $veget |
|---|
| 782 | if [ $? -gt 0 ] ; then |
|---|
| 783 | echo 'Cannot update ORCHIDEE as not on the right branch for ORCHIDEE' |
|---|
| 784 | exit |
|---|
| 785 | fi |
|---|
| 786 | set -e |
|---|
| 787 | set +e ; svn update -r $veget ; set -e |
|---|
| 788 | fi |
|---|
| 789 | # Correctif suite debug Jean-Zay |
|---|
| 790 | sed -i -e 's/9010 FORMAT(A52,F17.14)/9010 FORMAT(A52,F20.14)/' src_stomate/stomate.f90 |
|---|
| 791 | opt_orc="-prod" ; if [ "$optim" = "-debug" ] ; then opt_orc="-debug" ; fi |
|---|
| 792 | |
|---|
| 793 | orchideelog=`pwd`/orchidee.log |
|---|
| 794 | echo '########################################################' |
|---|
| 795 | echo 'Compiling ORCHIDEE, the continental surfaces model ' |
|---|
| 796 | echo '########################################################' |
|---|
| 797 | echo log file : $orchideelog |
|---|
| 798 | export ORCHPATH=`pwd` |
|---|
| 799 | xios_orchid="-noxios" |
|---|
| 800 | if [ "$with_xios" = "y" ] ; then |
|---|
| 801 | xios_orchid="-xios" |
|---|
| 802 | fi |
|---|
| 803 | if [ -d tools ] ; then |
|---|
| 804 | ################################################################### |
|---|
| 805 | # Pour les experts qui voudraient changer de version d'orchidee. |
|---|
| 806 | # Attention : necessite d'avoir le password pour orchidee |
|---|
| 807 | |
|---|
| 808 | # Correctif suite debug Jean-Zay |
|---|
| 809 | if [ -f src_global/time.f90 ] ; then sed -i -e 's/CALL tlen2itau/\!CALL tlen2itau/' src_global/time.f90 ; fi |
|---|
| 810 | ################################################################### |
|---|
| 811 | if [ "$veget_version" == "false" ] ; then veget_version=orchidee2.0 ; fi |
|---|
| 812 | cd arch |
|---|
| 813 | sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \ |
|---|
| 814 | -e s:"%LINK .*.$":"%LINK $compiler":1 \ |
|---|
| 815 | -e s:"%FPP_FLAGS .*.$":"%FPP_FLAGS $fpp_flags":1 \ |
|---|
| 816 | -e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \ |
|---|
| 817 | -e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \ |
|---|
| 818 | -e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \ |
|---|
| 819 | -e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \ |
|---|
| 820 | -e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \ |
|---|
| 821 | -e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \ |
|---|
| 822 | arch-gfortran.fcm > arch-local.fcm |
|---|
| 823 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path |
|---|
| 824 | echo "NETCDF_INCDIR=${ncdfdir}/include" >> arch-local.path |
|---|
| 825 | echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path |
|---|
| 826 | echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path |
|---|
| 827 | echo 'XIOS_INCDIR=${ORCHDIR}/../XIOS/inc' >> arch-local.path |
|---|
| 828 | echo 'XIOS_LIBDIR="${ORCHDIR}/../XIOS/lib -lxios"' >> arch-local.path |
|---|
| 829 | cd ../ |
|---|
| 830 | # compiling ORCHIDEE sequential mode |
|---|
| 831 | |
|---|
| 832 | ./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel none -arch $arch > $orchideelog 2>&1 |
|---|
| 833 | echo ./makeorchidee_fcm -j $xios_orchid $opt_orc -parallel none -arch $arch |
|---|
| 834 | echo End of the first compilation of orchidee ; pwd |
|---|
| 835 | else |
|---|
| 836 | if [ -d src_parallel ] ; then |
|---|
| 837 | liste_src="parallel parameters global stomate sechiba driver" |
|---|
| 838 | if [ "$veget_version" == "false" ] ; then veget_version=orchidee2.0 ; fi |
|---|
| 839 | fi |
|---|
| 840 | for d in $liste_src ; do src_d=src_$d |
|---|
| 841 | echo src_d $src_d |
|---|
| 842 | echo ls ; ls |
|---|
| 843 | if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi |
|---|
| 844 | cd $src_d ; \rm -f *.mod make ; $make clean |
|---|
| 845 | $make > $orchideelog 2>&1 ; if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then cp -f *.mod ../../../lib ; fi |
|---|
| 846 | cd .. |
|---|
| 847 | done |
|---|
| 848 | fi |
|---|
| 849 | echo install.sh orchidee_OK `date` |
|---|
| 850 | fi # of if [ "$veget" = 1 ] |
|---|
| 851 | |
|---|
| 852 | |
|---|
| 853 | #============================================================================ |
|---|
| 854 | # Ehouarn: the directory name LMDZ* depends on version/tar file... |
|---|
| 855 | if [ -d $MODEL/modipsl/modeles/LMD* ] ; then |
|---|
| 856 | echo '##########################################################' |
|---|
| 857 | echo 'Compiling LMDZ' |
|---|
| 858 | echo '##########################################################' |
|---|
| 859 | cd $MODEL/modipsl/modeles/LMD* |
|---|
| 860 | LMDZPATH=`pwd` |
|---|
| 861 | else |
|---|
| 862 | echo "ERROR: No LMD* directory !!!" |
|---|
| 863 | exit |
|---|
| 864 | fi |
|---|
| 865 | |
|---|
| 866 | ########################################################### |
|---|
| 867 | # For those who want to use fcm to compile via : |
|---|
| 868 | # makelmdz_fcm -arch local ..... |
|---|
| 869 | ############################################################ |
|---|
| 870 | |
|---|
| 871 | if [ "$pclinux" = "1" ] ; then |
|---|
| 872 | |
|---|
| 873 | # create local 'arch' files (if on Linux PC): |
|---|
| 874 | cd arch |
|---|
| 875 | # arch-local.path file |
|---|
| 876 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path |
|---|
| 877 | echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path |
|---|
| 878 | echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
|---|
| 879 | echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
|---|
| 880 | echo 'XIOS_INCDIR=$LMDGCM/../XIOS/inc' >> arch-local.path |
|---|
| 881 | echo 'XIOS_LIBDIR=$LMDGCM/../XIOS/lib' >> arch-local.path |
|---|
| 882 | echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
|---|
| 883 | echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
|---|
| 884 | |
|---|
| 885 | if [ $pcmac == 1 ] ; then |
|---|
| 886 | BASE_LD="$BASE_LD -Wl,-rpath,${ncdfdir}/lib" |
|---|
| 887 | else |
|---|
| 888 | BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib" |
|---|
| 889 | fi |
|---|
| 890 | # Arch-local.fcm file (adapted from arch-linux-32bit.fcm) |
|---|
| 891 | |
|---|
| 892 | if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi |
|---|
| 893 | sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \ |
|---|
| 894 | -e s:"%LINK .*.$":"%LINK $compiler":1 \ |
|---|
| 895 | -e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \ |
|---|
| 896 | -e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \ |
|---|
| 897 | -e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \ |
|---|
| 898 | -e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \ |
|---|
| 899 | -e s:"%FPP_DEF .*.$":"%FPP_DEF $FPP_DEF":1 \ |
|---|
| 900 | -e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \ |
|---|
| 901 | -e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \ |
|---|
| 902 | arch-linux-32bit.fcm > arch-local.fcm |
|---|
| 903 | |
|---|
| 904 | cd .. |
|---|
| 905 | ### Adapt "bld.cfg" (add the shell): |
|---|
| 906 | whereisthatshell=$(which ${use_shell}) |
|---|
| 907 | echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg |
|---|
| 908 | |
|---|
| 909 | fi # of if [ "$pclinux" = 1 ] |
|---|
| 910 | |
|---|
| 911 | |
|---|
| 912 | cd $MODEL/modipsl/modeles/LMDZ* |
|---|
| 913 | lmdzlog=`pwd`/lmdz.log |
|---|
| 914 | |
|---|
| 915 | ################################################################## |
|---|
| 916 | # Possibly update LMDZ if a specific svn release is requested |
|---|
| 917 | ################################################################## |
|---|
| 918 | |
|---|
| 919 | |
|---|
| 920 | set +e ; svn upgrade ; set -e |
|---|
| 921 | if [ "$svn" = "last" ] ; then svnopt="" ; else svnopt="-r $svn" ; fi |
|---|
| 922 | if [ "$svn" != "" ] ; then |
|---|
| 923 | svn info | grep -q 'http:' |
|---|
| 924 | if [ $? = 0 ] ; then |
|---|
| 925 | svn switch --relocate http://svn.lmd.jussieu.fr/LMDZ https://svn.lmd.jussieu.fr/LMDZ |
|---|
| 926 | fi |
|---|
| 927 | svn update $svnopt |
|---|
| 928 | fi |
|---|
| 929 | set -e |
|---|
| 930 | |
|---|
| 931 | echo '##################################################################' |
|---|
| 932 | echo Compile LMDZ |
|---|
| 933 | echo '##################################################################' |
|---|
| 934 | echo log file : $lmdzlog |
|---|
| 935 | |
|---|
| 936 | if [ "$env_file" != "" ] ; then mv arch/arch-${arch}.env arch/arch-${arch}.orig ; \cp -f $env_file arch/arch-${arch}.env ; fi |
|---|
| 937 | |
|---|
| 938 | echo install.sh avant_compilation `date` |
|---|
| 939 | if [ $compile_with_fcm = 1 ] ; then makelmdz="makelmdz_fcm $optim -arch $arch -j 8 " ; else makelmdz="makelmdz $optim -arch $arch" ; fi |
|---|
| 940 | |
|---|
| 941 | # sequential compilation and bench |
|---|
| 942 | if [ "$sequential" = 1 ] ; then |
|---|
| 943 | echo "./$makelmdz $optim $OPT_MAKELMDZ $optim $opt_rad $opt_cosp -d ${grid_resolution} -v $veget_version gcm " >> compile.sh |
|---|
| 944 | chmod +x ./compile.sh |
|---|
| 945 | if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi |
|---|
| 946 | echo install.sh apres_compilation `date` |
|---|
| 947 | |
|---|
| 948 | |
|---|
| 949 | fi # fin sequential |
|---|
| 950 | |
|---|
| 951 | |
|---|
| 952 | |
|---|
| 953 | # compiling in parallel mode |
|---|
| 954 | if [ $parallel != "none" ] ; then |
|---|
| 955 | echo '##########################################################' |
|---|
| 956 | echo ' Parallel compile ' |
|---|
| 957 | echo '##########################################################' |
|---|
| 958 | # saving the sequential libs and binaries |
|---|
| 959 | cd $MODEL/modipsl |
|---|
| 960 | tar cf sequential.tar bin/ lib/ |
|---|
| 961 | \rm -rf bin/ lib/ |
|---|
| 962 | tar xf ioipsl.tar |
|---|
| 963 | # |
|---|
| 964 | # Orchidee |
|---|
| 965 | # |
|---|
| 966 | cd $ORCHPATH |
|---|
| 967 | if [ -d src_parallel -a $veget != 'NONE' ] ; then |
|---|
| 968 | cd arch |
|---|
| 969 | sed \ |
|---|
| 970 | -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \ |
|---|
| 971 | -e s:"%LINK.*.$":"%LINK $par_comp":1 \ |
|---|
| 972 | -e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \ |
|---|
| 973 | -e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \ |
|---|
| 974 | -e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \ |
|---|
| 975 | -e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \ |
|---|
| 976 | arch-local.fcm > tmp.fcm |
|---|
| 977 | |
|---|
| 978 | mv tmp.fcm arch-local.fcm |
|---|
| 979 | cd ../ |
|---|
| 980 | echo compiling ORCHIDEE parallel mode |
|---|
| 981 | echo logfile $orchideelog |
|---|
| 982 | ./makeorchidee_fcm -j 8 -clean $xios_orchid $opt_orc -parallel $parallel -arch $arch > $orchideelog 2>&1 |
|---|
| 983 | ./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel $parallel -arch $arch >> $orchideelog 2>&1 |
|---|
| 984 | echo ./makeorchidee_fcm -j 8 -clean $xios_orchid $opt_orc -parallel $parallel -arch $arch |
|---|
| 985 | echo ./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel $parallel -arch $arch |
|---|
| 986 | elif [ $veget != 'NONE' ] ; then |
|---|
| 987 | echo '##########################################################' |
|---|
| 988 | echo ' Orchidee version too old ' |
|---|
| 989 | echo ' Please update to new version ' |
|---|
| 990 | echo '##########################################################' |
|---|
| 991 | exit |
|---|
| 992 | fi # of if [ -d src_parallel ] |
|---|
| 993 | # LMDZ |
|---|
| 994 | cd $LMDZPATH |
|---|
| 995 | if [ $arch = local ] ; then |
|---|
| 996 | cd arch |
|---|
| 997 | sed -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \ |
|---|
| 998 | -e s:"%LINK.*.$":"%LINK $par_comp":1 \ |
|---|
| 999 | -e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \ |
|---|
| 1000 | -e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \ |
|---|
| 1001 | -e s:"%ARFLAGS.*.$":"%ARFLAGS $ARFLAGS":1 \ |
|---|
| 1002 | -e s@"%BASE_LD.*.$"@"%BASE_LD -Wl,-rpath=${root_mpi}/lib:${ncdfdir}/lib"@1 \ |
|---|
| 1003 | -e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \ |
|---|
| 1004 | -e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \ |
|---|
| 1005 | arch-local.fcm > tmp.fcm |
|---|
| 1006 | mv tmp.fcm arch-local.fcm |
|---|
| 1007 | cd ../ |
|---|
| 1008 | fi |
|---|
| 1009 | rm -f compile.sh |
|---|
| 1010 | echo resol=${grid_resolution} >> compile.sh |
|---|
| 1011 | if [ ${hostname:0:5} = jean- -a "$cosp" = "v2" ] ; then |
|---|
| 1012 | echo ATTENTION le probleme de cospv2 sur jean-zay en mode prod n est pas corrige |
|---|
| 1013 | # ATTENTION le probleme de cospv2 sur jean-zay en mode prod n est pas corrige |
|---|
| 1014 | echo ./$makelmdz -dev $optim $OPT_MAKELMDZ $opt_rad $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh |
|---|
| 1015 | echo ./$makelmdz -dev $optim $OPT_MAKELMDZ $opt_rad $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm |
|---|
| 1016 | else |
|---|
| 1017 | echo ./$makelmdz $optim $OPT_MAKELMDZ $opt_rad $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh |
|---|
| 1018 | echo ./$makelmdz $optim $OPT_MAKELMDZ $opt_rad $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm |
|---|
| 1019 | fi |
|---|
| 1020 | chmod +x ./compile.sh |
|---|
| 1021 | if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi |
|---|
| 1022 | |
|---|
| 1023 | echo "Compilation finished" |
|---|
| 1024 | |
|---|
| 1025 | fi # of if [ $parallel != "none" ] |
|---|
| 1026 | |
|---|
| 1027 | |
|---|
| 1028 | ################################################################## |
|---|
| 1029 | # Verification du succes de la compilation |
|---|
| 1030 | ################################################################## |
|---|
| 1031 | |
|---|
| 1032 | # Recherche de l'executable dont le nom a change au fil du temps ... |
|---|
| 1033 | gcm="" |
|---|
| 1034 | #for exe in gcm.e bin/gcm_${grid_resolution}_phylmd_seq_orch.e bin/gcm_${grid_resolution}_phylmd_seq.e bin/gcm_${grid_resolution}_phylmd_para_mem_orch.e bin/gcm_${grid_resolution}_phylmd_para_mem.e ; do |
|---|
| 1035 | for exe in gcm.e bin/gcm_${grid_resolution}_phylmd${suff_exe}${suff_orc}.e ; do if [ -f $exe ] ; then gcm=$exe ; fi |
|---|
| 1036 | done |
|---|
| 1037 | |
|---|
| 1038 | if [ "$gcm" = "" ] ; then |
|---|
| 1039 | if [ $bench != 0 ] ; then |
|---|
| 1040 | echo 'Compilation failed !! Cannot run the benchmark;' |
|---|
| 1041 | exit |
|---|
| 1042 | else |
|---|
| 1043 | echo 'Compilation not done (only done when bench=1)' |
|---|
| 1044 | fi |
|---|
| 1045 | else |
|---|
| 1046 | echo '##########################################################' |
|---|
| 1047 | echo 'Compilation successfull !! ' |
|---|
| 1048 | echo '##########################################################' |
|---|
| 1049 | echo The executable is $gcm |
|---|
| 1050 | fi |
|---|
| 1051 | |
|---|
| 1052 | ################################################################## |
|---|
| 1053 | # Below, we run a benchmark test (if bench=0) |
|---|
| 1054 | ################################################################## |
|---|
| 1055 | |
|---|
| 1056 | if [ $bench != 0 ] ; then |
|---|
| 1057 | |
|---|
| 1058 | echo '##########################################################' |
|---|
| 1059 | echo ' Running a test run ' |
|---|
| 1060 | echo '##########################################################' |
|---|
| 1061 | |
|---|
| 1062 | \rm -rf BENCH${grid_resolution} |
|---|
| 1063 | bench=bench_lmdz_${grid_resolution} |
|---|
| 1064 | echo install.sh before bench download `date` |
|---|
| 1065 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$bench.tar.gz |
|---|
| 1066 | myget 3DBenchs/$bench.tar.gz |
|---|
| 1067 | echo install.sh after bench download `date` |
|---|
| 1068 | tar xvf $bench.tar.gz |
|---|
| 1069 | |
|---|
| 1070 | if [ "$cosp" = "v1" -o "$cosp" = "v2" ] ; then |
|---|
| 1071 | cd BENCH${grid_resolution} |
|---|
| 1072 | # copier les fichiers namelist input et output our COSP |
|---|
| 1073 | cp ../DefLists/cosp*_input_nl.txt . |
|---|
| 1074 | cp ../DefLists/cosp*_output_nl.txt . |
|---|
| 1075 | # Activer la cles ok_cosp pour tourner avec COSP |
|---|
| 1076 | sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp |
|---|
| 1077 | \mv -f tmp config.def |
|---|
| 1078 | cd .. |
|---|
| 1079 | fi |
|---|
| 1080 | |
|---|
| 1081 | if [ -n "$physiq" ]; then |
|---|
| 1082 | cd BENCH${grid_resolution} |
|---|
| 1083 | if [ -f physiq.def_${physiq} ]; then |
|---|
| 1084 | cp physiq.def_${physiq} physiq.def |
|---|
| 1085 | echo using physiq.def_${physiq} |
|---|
| 1086 | else |
|---|
| 1087 | echo using standard physiq.def |
|---|
| 1088 | fi |
|---|
| 1089 | cd .. |
|---|
| 1090 | else |
|---|
| 1091 | echo using standard physiq.def |
|---|
| 1092 | fi |
|---|
| 1093 | |
|---|
| 1094 | if [ "$with_xios" = "y" ] ; then |
|---|
| 1095 | cd BENCH${grid_resolution} |
|---|
| 1096 | cp ../DefLists/iodef.xml . |
|---|
| 1097 | cp ../DefLists/context_lmdz.xml . |
|---|
| 1098 | cp ../DefLists/field_def_lmdz.xml . |
|---|
| 1099 | # A raffiner par la suite |
|---|
| 1100 | echo A FAIRE : Copier les *xml en fonction de l option cosp |
|---|
| 1101 | cp ../DefLists/field_def_cosp*.xml . |
|---|
| 1102 | cp ../DefLists/file_def_hist*xml . |
|---|
| 1103 | # adapt iodef.xml to use attached mode |
|---|
| 1104 | sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' iodef.xml > tmp |
|---|
| 1105 | \mv -f tmp iodef.xml |
|---|
| 1106 | |
|---|
| 1107 | # and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE. |
|---|
| 1108 | # except for histday |
|---|
| 1109 | for histfile in file_def_hist*xml |
|---|
| 1110 | do |
|---|
| 1111 | if [ "$histfile" = "file_def_histday_lmdz.xml" ] ; then |
|---|
| 1112 | sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' $histfile > tmp ; \mv -f tmp $histfile |
|---|
| 1113 | sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile > tmp ; \mv -f tmp $histfile |
|---|
| 1114 | sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile |
|---|
| 1115 | else |
|---|
| 1116 | sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' $histfile > tmp ; \mv -f tmp $histfile |
|---|
| 1117 | fi |
|---|
| 1118 | done |
|---|
| 1119 | # and add option "ok_all_xml=y" in config.def |
|---|
| 1120 | echo "### XIOS outputs" >> config.def |
|---|
| 1121 | echo 'ok_all_xml=.true.' >> config.def |
|---|
| 1122 | |
|---|
| 1123 | #activer les sorties pour Cosp |
|---|
| 1124 | if [ "$cosp" = "v1" ] ; then |
|---|
| 1125 | histfile=file_def_histdayCOSP_lmdz.xml |
|---|
| 1126 | sed -e 's@enabled=".FALSE."@enabled=".TRUE."@' $histfile > tmp ; \mv -f tmp $histfile |
|---|
| 1127 | sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile > tmp ; \mv -f tmp $histfile |
|---|
| 1128 | sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile |
|---|
| 1129 | fi |
|---|
| 1130 | if [ "$cosp" = "v2" ] ; then |
|---|
| 1131 | histfile=file_def_histdayCOSPv2_lmdz.xml |
|---|
| 1132 | sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile |
|---|
| 1133 | contextfile=context_lmdz.xml |
|---|
| 1134 | sed -e 's@src="./file_def_histdayCOSP_lmdz.xml"@src="./file_def_histdayCOSPv2_lmdz.xml"@' $contextfile > tmp ; \mv -f tmp $contextfile |
|---|
| 1135 | sed -e 's@src="./file_def_histmthCOSP_lmdz.xml"@src="./file_def_histmthCOSPv2_lmdz.xml"@' $contextfile > tmp ; \mv -f tmp $contextfile |
|---|
| 1136 | sed -e 's@src="./file_def_histhfCOSP_lmdz.xml"@src="./file_def_histhfCOSPv2_lmdz.xml"@' $contextfile > tmp ; \mv -f tmp $contextfile |
|---|
| 1137 | fieldfile=field_def_lmdz.xml |
|---|
| 1138 | sed -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' $fieldfile > tmp ; \mv -f tmp $fieldfile |
|---|
| 1139 | fi |
|---|
| 1140 | |
|---|
| 1141 | cd .. |
|---|
| 1142 | fi |
|---|
| 1143 | |
|---|
| 1144 | # Cas Bensh avec ecrad |
|---|
| 1145 | if [ "$rad" = "ecrad" ] ; then |
|---|
| 1146 | cd BENCH${grid_resolution} |
|---|
| 1147 | cp ../DefLists/namelist_ecrad . |
|---|
| 1148 | cp -r ../libf/phylmd/ecrad/data . |
|---|
| 1149 | # Attention au cas ou ne 1 |
|---|
| 1150 | sed -e 's@iflag_rrtm=1@iflag_rrtm=2@' physiq.def > tmp |
|---|
| 1151 | \mv -f tmp physiq.def |
|---|
| 1152 | cd .. |
|---|
| 1153 | fi |
|---|
| 1154 | |
|---|
| 1155 | cp $gcm BENCH${grid_resolution}/gcm.e |
|---|
| 1156 | |
|---|
| 1157 | cd BENCH${grid_resolution} |
|---|
| 1158 | # On cree le fichier bench.sh au besoin |
|---|
| 1159 | # Dans le cas 48x36x39 le bench.sh existe deja en parallele |
|---|
| 1160 | |
|---|
| 1161 | if [ "$grid_resolution" = "48x36x39" ] ; then |
|---|
| 1162 | echo On ne touche pas au bench.sh |
|---|
| 1163 | # But we have to adapt "run_local.sh" for $mpirun |
|---|
| 1164 | sed -e "s@mpirun@$mpirun@g" run_local.sh > tmp |
|---|
| 1165 | mv -f tmp run_local.sh |
|---|
| 1166 | chmod u=rwx run_local.sh |
|---|
| 1167 | elif [ "${parallel:0:3}" = "mpi" ] ; then |
|---|
| 1168 | # Lancement avec deux procs mpi et 2 openMP |
|---|
| 1169 | echo "export OMP_STACKSIZE=800M" > bench.sh |
|---|
| 1170 | if [ "${parallel:4:3}" = "omp" ] ; then |
|---|
| 1171 | echo "export OMP_NUM_THREADS=2" >> bench.sh |
|---|
| 1172 | fi |
|---|
| 1173 | if [ "$cosp" = "v1" -o "$cosp" = "v2" ] ; then |
|---|
| 1174 | if [ ${hostname:0:5} = jean- ] ; then |
|---|
| 1175 | chmod +x ../arch.env |
|---|
| 1176 | ../arch.env |
|---|
| 1177 | echo "ulimit -s 2000000" >> bench.sh |
|---|
| 1178 | else |
|---|
| 1179 | echo "ulimit -s 200000" >> bench.sh |
|---|
| 1180 | fi |
|---|
| 1181 | else |
|---|
| 1182 | echo "ulimit -s unlimited" >> bench.sh |
|---|
| 1183 | fi |
|---|
| 1184 | if [ ${hostname:0:5} = jean- ] ; then |
|---|
| 1185 | . ../arch/arch-${arch}.env |
|---|
| 1186 | echo "srun -n 2 -A $idris_acct@cpu gcm.e > listing 2>&1" >> bench.sh |
|---|
| 1187 | else |
|---|
| 1188 | echo "$mpirun -np 2 gcm.e > listing 2>&1" >> bench.sh |
|---|
| 1189 | fi |
|---|
| 1190 | # Add rebuild, using reb.sh if it is there |
|---|
| 1191 | echo 'if [ -f reb.sh ] ; then' >> bench.sh |
|---|
| 1192 | echo ' ./reb.sh histday ; ./reb.sh histmth ; ./reb.sh histhf ; ./reb.sh histins ; ./reb.sh stomate_history ; ./reb.sh sechiba_history ; ./reb.sh sechiba_out_2 ' >> bench.sh |
|---|
| 1193 | echo 'fi' >> bench.sh |
|---|
| 1194 | else |
|---|
| 1195 | echo "./gcm.e > listing 2>&1" > bench.sh |
|---|
| 1196 | fi |
|---|
| 1197 | # Getting orchidee stuff |
|---|
| 1198 | if [ $veget == 'CMIP6' ] ; then |
|---|
| 1199 | #echo 'myget 3DBenchs/BENCHorch11.tar.gz' |
|---|
| 1200 | #myget 3DBenchs/BENCHorch11.tar.gz |
|---|
| 1201 | #tar xvzf BENCHorch11.tar.gz |
|---|
| 1202 | echo 'myget 3DBenchs/BENCHCMIP6.tar.gz' |
|---|
| 1203 | myget 3DBenchs/BENCHCMIP6.tar.gz |
|---|
| 1204 | tar xvzf BENCHCMIP6.tar.gz |
|---|
| 1205 | sed -e "s:VEGET=n:VEGET=y:" config.def > tmp |
|---|
| 1206 | mv -f tmp config.def |
|---|
| 1207 | if [ "$with_xios" = "y" ] ; then |
|---|
| 1208 | cp ../../ORCHIDEE/src_xml/context_orchidee.xml . |
|---|
| 1209 | echo '<context id="orchidee" src="./context_orchidee.xml"/>' > add.tmp |
|---|
| 1210 | cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml . |
|---|
| 1211 | cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml . |
|---|
| 1212 | cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml . |
|---|
| 1213 | if [ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ] ; then |
|---|
| 1214 | cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml . |
|---|
| 1215 | echo '<context id="orchidee" src="./context_input_orchidee.xml"/>' >> add.tmp |
|---|
| 1216 | fi |
|---|
| 1217 | sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp |
|---|
| 1218 | mv tmp iodef.xml |
|---|
| 1219 | sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' file_def_orchidee.xml > tmp ; \mv -f tmp file_def_orchidee.xml |
|---|
| 1220 | sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' file_def_orchidee.xml > tmp ; \mv -f tmp file_def_orchidee.xml |
|---|
| 1221 | sed -e 's@output_level="_AUTO_"@output_level="1"@' file_def_orchidee.xml > tmp ; \mv -f tmp file_def_orchidee.xml |
|---|
| 1222 | sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' file_def_orchidee.xml > tmp ; \mv -f tmp file_def_orchidee.xml |
|---|
| 1223 | sed -e 's@compression_level="4"@compression_level="0"@' file_def_orchidee.xml > tmp ; \mv -f tmp file_def_orchidee.xml |
|---|
| 1224 | sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' orchidee.def > tmp ; \mv -f tmp orchidee.def |
|---|
| 1225 | fi |
|---|
| 1226 | fi |
|---|
| 1227 | echo EXECUTION DU BENCH |
|---|
| 1228 | set +e |
|---|
| 1229 | date ; ./bench.sh > out.bench 2>&1 ; date |
|---|
| 1230 | set -e |
|---|
| 1231 | tail listing |
|---|
| 1232 | |
|---|
| 1233 | |
|---|
| 1234 | echo '##########################################################' |
|---|
| 1235 | echo 'Simulation finished in' `pwd` |
|---|
| 1236 | echo 'You have compiled with:' |
|---|
| 1237 | cat ../compile.sh |
|---|
| 1238 | if [ $parallel = "none" ] ; then |
|---|
| 1239 | echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e' |
|---|
| 1240 | echo 'or ./bench.sh' |
|---|
| 1241 | else |
|---|
| 1242 | echo 'You may re-run it with : ' |
|---|
| 1243 | echo 'cd ' `pwd` '; ./bench.sh' |
|---|
| 1244 | # echo 'ulimit -s unlimited' |
|---|
| 1245 | # echo 'export OMP_NUM_THREADS=2' |
|---|
| 1246 | # echo 'export OMP_STACKSIZE=800M' |
|---|
| 1247 | # echo "$mpirun -np 2 gcm.e " |
|---|
| 1248 | fi |
|---|
| 1249 | echo '##########################################################' |
|---|
| 1250 | |
|---|
| 1251 | fi # bench |
|---|
| 1252 | |
|---|
| 1253 | |
|---|
| 1254 | ################################################################# |
|---|
| 1255 | # Installation eventuelle du 1D |
|---|
| 1256 | ################################################################# |
|---|
| 1257 | |
|---|
| 1258 | if [ $SCM = 1 ] ; then |
|---|
| 1259 | cd $MODEL |
|---|
| 1260 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/1D.tar.gz |
|---|
| 1261 | myget 1D/1D.tar.gz |
|---|
| 1262 | tar xvf 1D.tar.gz |
|---|
| 1263 | cd 1D |
|---|
| 1264 | ./run.sh -rad $rad |
|---|
| 1265 | fi |
|---|
| 1266 | set -vx |
|---|
| 1267 | |
|---|
| 1268 | ################################################################# |
|---|
| 1269 | # sauvegarde des options veget pour utilisation eventuelle tutorial_prod |
|---|
| 1270 | ################################################################# |
|---|
| 1271 | cd $MODEL/modipsl/modeles |
|---|
| 1272 | echo surface_env file created in $MODEL |
|---|
| 1273 | echo 'veget='$veget > surface_env |
|---|
| 1274 | #opt_veget="-v $veget_version" |
|---|
| 1275 | #echo 'opt_veget="'$opt_veget\" >> surface_env |
|---|
| 1276 | echo 'opt_veget="'-v $veget_version\" >> surface_env |
|---|
| 1277 | echo 'orchidee_rev='$orchidee_rev >> surface_env |
|---|
| 1278 | echo 'suforch='$suff_orc >> surface_env |
|---|
| 1279 | |
|---|
| 1280 | |
|---|
| 1281 | |
|---|
| 1282 | |
|---|
