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source: BOL/script_install/install_lmdz.sh @ 3044

Last change on this file since 3044 was 3044, checked in by fhourdin, 7 years ago
Update install script and delete obsolete install1d.sh. EM
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1	#!/bin/bash
2
3	###########################################################################
4	# Author : Laurent Fairhead et Frédéric Hourdin
5	# Usage : install_lmdz.sh -help
6	#
7	# bash installation script of the LMDZ model on a Linux PC.
8	# the model is downloaded in the following direcory tree
9	# $MODEL/modipsl/modeles/...
10	# using the "modipsl" infrastructure created by the "IPSL"
11	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
12	# activities.
13	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
14	# components.
15	#
16	# The sources of the models can be found in the "modeles" directory.
17	# In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs
18	# using the NetCDF library.
19	#
20	# The script downloads various source files (including a version of NetCDF)
21	# and utilities, compiles the model, and runs a test simulation in a
22	# munimal configuration.
23	#
24	# Prerequisites : pgf90/gfortran, ksh, wget , gunzip, tar, ...
25	#
26	# Modif 18/11/2011
27	# changes for option real 8.
28	# We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
29	# but with -r4 for netcdf. Variable real must be set to
30	# r4 or r8 at the beginning of the script below.
31	#
32	###########################################################################
33
34	echo install.sh DEBUT `date`
35
36	set -e
37
38	################################################################
39	# Choice of installation options
40	################################################################
41
42	# A function to fetch files either locally or on the internet
43	function myget { #1st and only argument should be file name
44	# Path on local computer where to look for the datafile
45	LMDZ_HOME="/u/lmdz/WWW/Distrib"
46	if [ -f $LMDZ_HOME/$1 ] ; then
47	\cp -f -p $LMDZ_HOME/$1 .
48	else
49	wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$1
50	fi
51	}
52
53
54	#real=r4
55	real=r8
56
57	# WARNING !!!! For versions before october 2009, use
58	# install.v2.sh instead of install.sh
59
60	#########################################################################
61	# Valeur par défaut des parametres
62	#########################################################################
63	svn=""
64	version=testing
65	getlmdzor=1
66	netcdf=1 # 1 for automatic installation
67	# 0 for no installation
68	# /.../../netcdf-4.0.1 if wanting to link with an already
69	# compiled netcdf library (implies to check option compatibility)
70	check_linux=1
71	ioipsl=1
72	veget=1
73	bench=1
74	pclinux=1
75	SCM=0
76	# use the old orchidee interface without the calculation of z0h
77	no_z0h_orc=1
78	# choose the resolution for the bench runs
79	# grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE)
80	# 96x71x19 standard configuration
81	grid_resolution=144x142x79
82	grid_resolution=48x36x19
83
84	## parallel can take the values none/mpi/omp/mpi_omp
85	parallel=mpi_omp
86	parallel=none
87	OPT_GPROF=""
88	OPT_MAKELMDZ=""
89	MODEL=""
90
91	#########################################################################
92	# Options interactives
93	#########################################################################
94	while (($# > 0))
95	do
96	case $1 in
97	"-h") cat <<........fin
98	$0 [ -v version ] [ -r svn_release ]
99	[ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ]
100	[-name LOCAL_MODEL_NAME] [-gprof] [-opt_makelmdz]
101
102	-v "version" like 20150828.trunk
103	see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk
104
105	-r "svn_release" : either the svn release number or "last"
106
107	-parallel PARA : can be mpi_omp (mpi with openMP) or none (for sequential)
108
109	-d GRID_RESOLUTION should be among the available benchs if -bench 1
110	among which : 48x36x19, 48x36x39
111	if wanting to run a bench simulation in addition to compilation
112	default : 48x36x19
113
114	-bench activating the bench or not (0/1). Default 1
115
116	-name LOCAL_MODEL_NAME : default = LMDZversion.release
117
118	-gprof to compile with -pg to enable profiling with gprof
119	-SCM install 1D version automatically
120	-opt_makelmdz to call makelmdz or makelmdz_fcm with additional options
121	........fin
122	exit ;;
123	"-v") version=$2 ; shift ; shift ;;
124	"-r") svn=$2 ; shift ; shift ;;
125	"-d") grid_resolution=$2 ; shift ; shift ;;
126	"-gprof") OPT_GPROF="-pg" ; shift ;;
127	"-SCM") SCM=1 ; shift ;;
128	"-opt_makelmdz") OPT_MAKELMDZ="$2" ; shift ; shift ;;
129	"-parallel") parallel=$2
130	case $parallel in
131	"mpi"\|"omp"\|"mpi_omp") parallel=$2 ; shift ; shift ;;
132	*) echo Only mpi omp mpi_omp for the parallel option ; exit
133	esac ;;
134	"-bench") bench=$2 ; shift ; shift ;;
135	"-name") MODEL=$2 ; shift ; shift ;;
136	*) ./install_lmdz.sh -h ; exit
137	esac
138	done
139
140	if [ $parallel = none ] ; then sequential=1 ; else sequential=0 ; fi
141
142
143	compilo=gfortran # compilo=pgf90 or gfortran or ifort sur PC linux
144	#Chemin pour placer le modele
145	if [ "$MODEL" = "" ] ; then MODEL=./LMDZ$version$svn ; fi
146
147
148	## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0)
149	compile_with_fcm=1
150	arch=local
151
152
153	if [ $compilo = g95 ] ; then echo g95 is not supported anymore ; exit ; fi
154
155	################################################################
156	# Specificite des machines
157	################################################################
158
159	hostname=`hostname`
160	if [ "$pclinux" = 1 ] ; then o_ins_make="-t g95" ; else o_ins_make="" ; fi
161
162	case ${hostname:0:5} in
163
164	ada33) compilo="ifort" ;
165	par_comp="ifort" ;
166	o_ins_make="-t ada" ;
167	make=gmake ;
168	# module load intel/2013.0 ;
169	arch=X64_ADA ;;
170
171	*) compilo="gfortran" ;
172	if [ $parallel = none -o -f /usr/bin/mpif90 ] ; then
173	path_mpi="" ;
174	# Pour les installations Scientifique Linux LMD ou ciclad :
175	elif [ -f /usr/lib64/openmpi/1.4.5-gfortran/bin/mpif90 ] ; then
176	path_mpi=/usr/lib64/openmpi/1.4.5-gfortran/bin/ ;
177	else
178	echo Je ne trouve pas mpif90 ;
179	exit ;
180	fi ;
181	par_comp=${path_mpi}mpif90 ;
182	mpirun=${path_mpi}mpirun ;
183	arch=local ;
184	make=make ;
185	o_ins_make="-t g95"
186	esac
187
188
189	# MPI_FLAGS are the flags needed for compilation with MPI
190	MPI_FLAGS="-I/usr/include/openmpi-x86_64 -fcray-pointer"
191	MPI_FLAGS="-fcray-pointer"
192	# MPI_LD are the flags needed for linking with MPI
193	MPI_LD="-L/usr/lib64/openmpi/lib -lmpi"
194	# OMP_FLAGS are the flags needed for compilation with OpenMP
195	OMP_FLAGS="-fopenmp -fcray-pointer"
196	# OMP_LD are the flags needed for linking with OpenMP
197	OMP_LD="-fopenmp -L/usr/lib64 -lnuma"
198	OMP_LD="-fopenmp"
199
200
201	#####################################################################
202	# Test for old gfortran compilers
203	# If the compiler is too old (older than 4.3.x) we test if the
204	# temporary gfortran44 patch is available on the computer in which
205	# case the compiler is changed from gfortran to gfortran44
206	# Must be aware than parallelism can not be activated in this case
207	#####################################################################
208
209	if [ "$compilo" = "gfortran" ] ; then
210	gfortran=gfortran
211	gfortranv=`gfortran --version \| \
212	head -1 \| awk ' { print $NF } ' \| awk -F. ' { print $1 * 10 + $2 } '`
213	if [ $gfortranv -le 43 ] ; then
214	echo ERROR : Your gfortran compiler is too old
215	echo 'Please choose a new one (ifort) and change the line'
216	echo compilo=xxx
217	echo in the install.sh script and rerun it
218	if [ `which gfortran44 \| wc -w` -ne 0 ] ; then
219	gfortran=gfortran44
220	else
221	echo gfotran trop vieux ; exit
222	fi
223	fi
224	compilo=$gfortran
225	fi
226	#####################################################################
227
228
229
230	echo '################################################################'
231	echo Choix des options de compilation
232	echo '################################################################'
233
234	export FC=$compilo
235	export F90=$compilo
236	export F77=$compilo
237	export CPPFLAGS=
238	OPTIMNC=$OPTIM
239	BASE_LD="$OPT_GPROF"
240	OPTPREC="$OPT_GPROF"
241
242	if [ "$compilo" = "$gfortran" ] ; then
243	OPTIM='-O3'
244	OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -fbacktrace -finit-real=nan"
245	OPTDEV="-Wall -fbounds-check"
246	fmod='I '
247	OPTPREC="$OPTPREC -cpp -ffree-line-length-0"
248	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE" ; fi
249	export F90FLAGS=" -ffree-form $OPTIMNC"
250	export FFLAGS=" $OPTIMNC"
251	export CC=gcc
252	export CXX=g++
253	export fpp_flags="-P -C -traditional -ffreestanding"
254
255	elif [ $compilo = mpif90 ] ; then
256	OPTIM='-O3'
257	OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all"
258	OPTDEV="-Wall -fbounds-check"
259	BASE_LD="$BASE_LD -lblas"
260	fmod='I '
261	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE -fcray-pointer" ; fi
262	export F90FLAGS=" -ffree-form $OPTIMNC"
263	export FFLAGS=" $OPTIMNC"
264	export CC=gcc
265	export CXX=g++
266
267	elif [ $compilo = pgf90 ] ; then
268	OPTIM='-O2 -Mipa -Munroll -Mnoframe -Mautoinline -Mcache_align'
269	OPTDEB='-g -Mdclchk -Mbounds -Mchkfpstk -Mchkptr -Minform=inform -Mstandard -Ktrap=fp -traceback'
270	OPTDEV='-g -Mbounds -Ktrap=fp -traceback'
271	fmod='module '
272	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -r8 -DNC_DOUBLE" ; fi
273	export CPPFLAGS="-DpgiFortran"
274	export CC=pgcc
275	export CFLAGS="-O2 -Msignextend"
276	export CXX=pgCC
277	export CXXFLAGS="-O2 -Msignextend"
278	export FFLAGS="-O2 $OPTIMNC"
279	export F90FLAGS="-O2 $OPTIMNC"
280	compile_with_fcm=1
281
282	elif [ $compilo = ifort ] ; then
283	OPTIM="-O2 -fp-model strict -ip -align all "
284	OPTDEV="-p -g -O2 -traceback -fp-stack-check -ftrapuv -check"
285	OPTDEB="-g -no-ftz -traceback -ftrapuv -fp-stack-check -check"
286	fmod='module '
287	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi
288	export CPP="icc -E"
289	export FFLAGS="-O2 -ip -fpic -mcmodel=large"
290	export FCFLAGS="-O2 -ip -fpic -mcmodel=large"
291	export CC=icc
292	export CFLAGS="-O2 -ip -fpic -mcmodel=large"
293	export CXX=icpc
294	export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
295	compile_with_fcm=1
296
297	else
298	echo unexpected compiler $compilo ; exit
299	fi
300
301	OPTIMGCM="$OPTIM $OPTPREC"
302
303	hostname=`hostname`
304
305	##########################################################################
306	# If installing on know machines such as IBM x3750 (Ada)
307	# at IDRIS, don't check for available software and don"t install netcdf
308	if [ ${hostname:0:5} = ada33 ] ; then
309	netcdf=0 # no need to recompile netcdf, alreday available
310	check_linux=0
311	pclinux=0
312	ioipsl=1 # no need to recompile ioipsl, already available
313	#netcdf="/smplocal/pub/NetCDF/4.1.3"
314	compilo="ifort"
315	fmod='module '
316	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi
317	OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all "
318	OPTIMGCM="$OPTIM $OPTPREC"
319	fi
320	##########################################################################
321
322
323
324	mkdir -p $MODEL
325	echo $MODEL
326	MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary
327
328
329
330	# Option -fendian=big is only to be used with ARPEGE1D.
331	# The -r8 should probably be avoided if running on 32 bit machines
332	# Option r8 is not mandatory and generates larger executables.
333	# It is however mandatory if using ARPEGE1D
334	# Better optimization options might be a better choice (e.g. -O3)
335
336
337	echo '################################################################'
338	if [ "$check_linux" = 1 ] ; then
339	echo Check if required software is available
340	echo '################################################################'
341
342	#### Ehouarn: test if ksh and/or bash are available
343	use_shell="ksh" # default: use ksh
344	if [ "`which ksh`" = "" ] ; then
345	echo "no ksh ... we will use bash"
346	use_shell="bash"
347	if [ "`which bash`" = "" ] ; then
348	echo "ksh (or bash) needed!! Install it!"
349	fi
350	fi
351
352
353	for logiciel in csh wget tar gzip make $compilo gcc ; do
354	if [ "`which $logiciel`" = "" ] ; then
355	echo You must first install $logiciel on your system
356	exit
357	fi
358	done
359
360	if [ $pclinux = 1 ] ; then
361	cd $MODEL
362	cat <<eod > tt.f90
363	print*,'coucou'
364	end
365	eod
366	$compilo tt.f90 -o a.out
367	./a.out >\| tt
368	if [ "`cat tt \| sed -e 's/ //g' `" != "coucou" ] ; then
369	echo problem installing with compiler $compilo ; exit ; fi
370	\rm tt a.out tt.f90
371	fi
372	fi
373
374	###########################################################################
375	if [ $getlmdzor = 1 ] ; then
376	echo '##########################################################'
377	echo Download a slightly modified version of LMDZ
378	echo '##########################################################'
379	cd $MODEL
380	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/modipsl.$version.tar.gz
381	myget modipsl.$version.tar.gz
382	echo install.sh wget_OK `date`
383	gunzip modipsl.$version.tar.gz
384	tar xvf modipsl.$version.tar
385	\rm modipsl.$version.tar
386
387	fi
388
389	echo OK1
390
391	if [ $netcdf = 1 ] ; then
392	echo '##########################################################'
393	echo Compiling the Netcdf library
394	echo '##########################################################'
395	cd $MODEL
396	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/netcdf-4.0.1.tar.gz
397	myget netcdf-4.0.1.tar.gz
398	gunzip netcdf-4.0.1.tar.gz
399	tar xvf netcdf-4.0.1.tar
400	\rm -f netcdf-4.0.1.tar
401
402	cd netcdf-4.0.1
403
404	sed -e 's/gfortran/'$gfortran'/g' configure >\| tmp ; mv -f tmp configure ; chmod +x configure
405	localdir=`pwd -P`
406	./configure --prefix=$localdir --enable-shared --disable-cxx
407	sed -e 's/gfortran/'$gfortran'/g' Makefile >\| tmp ; mv -f tmp Makefile
408	$make check
409	$make install
410	echo install.sh netcdf_OK `date`
411	fi # of if [ $netcdf = 1 ]
412
413
414	#=======================================================================================
415	echo OK2 ioipsl=$ioipsl
416	echo '##########################################################'
417	echo 'Installing MODIPSL, the installation package manager for the '
418	echo 'IPSL models and tools'
419	echo '##########################################################'
420
421	if [ $netcdf = 0 -o $netcdf = 1 ] ; then
422	ncdfdir=$MODEL/netcdf-4.0.1
423	else
424	ncdfdir=$netcdf
425	fi
426
427	if [ $ioipsl = 1 ] ; then
428	cd $MODEL/modipsl
429	\rm -rf lib/*
430
431	cd util
432
433	cp AA_make.gdef AA_make.orig
434	F_C="$compilo -c " ; if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then F_C="$compilo -c -cpp " ; fi
435	if [ "$compilo" = "pgf90" ] ; then F_C="$compilo -c -Mpreprocess" ; fi
436	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
437	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c -cpp:F_C = $F_C": \
438	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
439	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= '"$ncdfdir"'/include:' \
440	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdff -lnetcdf:' \
441	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
442	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
443	tmp >\| AA_make.gdef
444
445
446	# We use lines for g95 even for the other compilers to run ins_make
447	if [ "$use_shell" = "ksh" ] ; then
448	./ins_make $o_ins_make
449	else # bash
450	sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash
451	if [ "`grep ada AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar
452	\cp -f ~rdzt401/bin/AA_make.gdef .
453	fi
454	chmod u=rwx ins_make.bash
455	./ins_make.bash $o_ins_make
456	fi # of if [ "$use_shell" = "ksh" ]
457
458	#=======================================================================================
459	echo '##########################################################'
460	echo 'Compiling IOIPSL, the interface library with Netcdf'
461	echo '##########################################################'
462
463	cd $MODEL/modipsl/modeles/IOIPSL/src
464	if [ "$use_shell" = "bash" ] ; then
465	cp Makefile Makefile.ksh
466	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
467	fi
468	# if [ "$pclinux" = 1 ] ; then
469	# Build IOIPSL modules and library
470	echo EOEOFOOEOOOOOOOOOOOOOOOOOOOOOOOOOOOO
471	$make clean
472	$make
473	if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then # copy module files to lib
474	cp -f *.mod ../../../lib
475	fi
476	# Build IOIPSL tools (ie: "rebuild", if present)
477	if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then
478	cd $MODEL/modipsl/modeles/IOIPSL/tools
479	# adapt Makefile & rebuild script if in bash
480	if [ "$use_shell" = "bash" ] ; then
481	cp Makefile Makefile.ksh
482	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
483	cp rebuild rebuild.ksh
484	sed -e 's:/bin/ksh:/bin/bash:g' \
485	-e 's:print -u2:echo:g' \
486	-e 's:print:echo:g' rebuild.ksh > rebuild
487	fi
488	$make clean
489	$make
490	fi
491	# fi # of if [ "$pclinux" = 1 ]
492
493	else # of if [ $ioipsl = 1 ]
494	if [ ${hostname:0:5} = ada33 ] ; then
495	cd $MODEL/modipsl
496	cd util
497
498	cp AA_make.gdef AA_make.orig
499	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
500	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \
501	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
502	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= -I/smplocal/pub/HDF5/1.8.9/seq/include -I/smplocal/pub/NetCDF/4.1.3/include:' \
503	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L/smplocal/pub/NetCDF/4.1.3/lib -lnetcdff -lnetcdf:' \
504	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
505	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
506	tmp >\| AA_make.gdef
507
508	./ins_make $o_ins_make # We use lines for g95 even for the other compilers
509
510	# on Ada, IOIPSL is already installed in ~rpsl035/IOIPSL_PLUS
511	# so link it to current settings
512	cd $MODEL/modipsl/modeles/
513	\rm -r -f IOIPSL
514	ln -s ~rpsl035/IOIPSL_PLUS IOIPSL
515	cd ..
516	ln -s ~rpsl035/IOIPSL_PLUS/modipsl_Tagv2_2_3/bin/* bin/
517	ln -s ~rpsl035/IOIPSL_PLUS/modipsl_Tagv2_2_3/lib/* lib/
518
519	fi # of if [ ${hostname:0:5} = ada33 ]
520	echo install.sh ioipsl_OK `date`
521	fi # of if [ $ioipsl = 1 ]
522	# Saving ioipsl lib for possible parallel compile
523	cd $MODEL/modipsl
524	tar cf ioipsl.tar lib/ bin/
525
526	#============================================================================
527	veget_version=false
528	if [ "$veget" = 1 ] ; then
529	echo '########################################################'
530	echo 'Compiling ORCHIDEE, the continental surfaces model '
531	echo '########################################################'
532	cd $MODEL/modipsl/modeles/ORCHIDEE
533	export ORCHPATH=`pwd`
534	if [ -d tools ] ; then
535	orchidee_rev=2247
536	veget_version=orchidee2.0
537	cd arch
538	sed -e s:"%COMPILER .*.$":"%COMPILER $compilo":1 \
539	-e s:"%LINK .*.$":"%LINK $compilo":1 \
540	-e s:"%FPP_FLAGS .*.$":"%FPP_FLAGS $fpp_flags":1 \
541	-e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \
542	-e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \
543	-e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \
544	-e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \
545	-e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \
546	arch-gfortran.fcm > arch-local.fcm
547	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path
548	echo "NETCDF_INCDIR=${ncdfdir}/include" >> arch-local.path
549	echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path
550	echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path
551	cd ../
552	# compiling ORCHIDEE sequential mode
553	./makeorchidee_fcm -j 8 -noxios -prod -parallel none -arch $arch
554	echo ./makeorchidee_fcm -j 8 -noxios -prod -parallel none -arch $arch
555	echo Fin de la premiere compilation orchidee ; pwd
556	else
557	if [ -d src_parallel ] ; then
558	liste_src="parallel parameters global stomate sechiba driver"
559	veget_version=orchidee2.0
560	else
561	# Obsolete, for ORCHIDEE_beton only
562	liste_src="parameters stomate sechiba "
563	# A trick to compile ORCHIDEE depending on if we are using real4 or real8
564	cd src_parameters ; \cp reqdprec.$real reqdprec.f90 ; cd ..
565	veget_version=orchidee1.9
566	fi
567	for d in $liste_src ; do src_d=src_$d
568	echo src_d $src_d
569	echo ls ; ls
570	if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi
571	cd $src_d ; \rm -f *.mod make ; $make clean
572	$make ; if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then cp -f *.mod ../../../lib ; fi
573	cd ..
574	done
575	fi
576	echo install.sh orchidee_OK `date`
577	fi # of if [ "$veget" = 1 ]
578
579
580	#============================================================================
581	# Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file...
582	if [ -d $MODEL/modipsl/modeles/LMD* ] ; then
583	echo '##########################################################'
584	echo 'Compiling LMDZ'
585	echo '##########################################################'
586	cd $MODEL/modipsl/modeles/LMD*
587	LMDZPATH=`pwd`
588	else
589	echo "ERROR: No LMD* directory !!!"
590	exit
591	fi
592
593	###########################################################
594	# For those who want to use fcm to compile via :
595	# makelmdz_fcm -arch local .....
596	############################################################
597
598	if [ "$pclinux" = "1" ] ; then
599
600	# create local 'arch' files (if on Linux PC):
601	cd arch
602	# arch-local.path file
603	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path
604	echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
605	echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path
606	echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
607	echo 'XIOS_INCDIR=$LMDGCM/../XIOS/inc' >> arch-local.path
608	echo 'XIOS_LIBDIR=$LMDGCM/../XIOS/lib' >> arch-local.path
609	echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path
610	echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
611
612	BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib"
613	# arch-local.fcm file (adapted from arch-linux-32bit.fcm)
614
615	if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi
616	sed -e s:"%COMPILER .*.$":"%COMPILER $compilo":1 \
617	-e s:"%LINK .*.$":"%LINK $compilo":1 \
618	-e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \
619	-e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \
620	-e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \
621	-e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \
622	-e s:"%FPP_DEF .*.$":"%FPP_DEF $FPP_DEF":1 \
623	-e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \
624	arch-linux-32bit.fcm > arch-local.fcm
625
626	cd ..
627	### Adapt "bld.cfg" (add the shell):
628	whereisthatshell=$(which ${use_shell})
629	echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg
630
631	fi # of if [ "$pclinux" = 1 ]
632
633
634	cd $MODEL/modipsl/modeles/LMD*
635
636	##################################################################
637	# Mise a jour eventuelle de LMDZ en cas de specification de la release svn
638	##################################################################
639
640	if [ "$svn" = "last" ] ; then svnopt="" ; else svnopt="-r $svn" ; fi
641	if [ "$svn" != "" ] ; then set +e ; svn upgrade ; set -e ; svn update $svnopt ; fi
642
643	##################################################################
644	# Compile LMDZ
645	##################################################################
646
647	echo install.sh avant_compilation `date`
648	if [ $compile_with_fcm = 1 ] ; then makelmdz="makelmdz_fcm -arch $arch -j 8" ; else makelmdz="makelmdz -arch $arch" ; fi
649
650	# use the orchidee interface that has no z0h
651	if [ "$no_z0h_orc" = 1 ] ; then
652	veget_version="$veget_version -cpp ORCHIDEE_NOZ0H"
653	fi
654
655	# sequential compilation and bench
656	if [ "$sequential" = 1 ] ; then
657	echo "./$makelmdz $OPT_MAKELMDZ -rrtm true -d ${grid_resolution} -v $veget_version gcm" >> compile.sh
658	chmod +x ./compile.sh ; ./compile.sh
659	echo install.sh apres_compilation `date`
660
661
662	fi # fin sequential
663
664
665
666	# compiling in parallel mode
667	if [ $parallel != "none" ] ; then
668	echo '##########################################################'
669	echo ' Parallel compile '
670	echo '##########################################################'
671	# saving the sequential libs and binaries
672	cd $MODEL/modipsl
673	tar cf sequential.tar bin/ lib/
674	\rm -rf bin/ lib/
675	tar xf ioipsl.tar
676	#
677	# Orchidee
678	#
679	cd $ORCHPATH
680	if [ -d src_parallel ] ; then
681	cd arch
682	sed \
683	-e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \
684	-e s:"%LINK.*.$":"%LINK $par_comp":1 \
685	-e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \
686	-e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \
687	-e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \
688	-e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \
689	arch-local.fcm > tmp.fcm
690
691	mv tmp.fcm arch-local.fcm
692	cd ../
693	# compiling ORCHIDEE parallel mode
694	./makeorchidee_fcm -j 8 -clean -noxios -prod -parallel $parallel -arch $arch
695	./makeorchidee_fcm -j 8 -noxios -prod -parallel $parallel -arch $arch
696	echo ./makeorchidee_fcm -j 8 -clean -noxios -prod -parallel $parallel -arch $arch
697	echo ./makeorchidee_fcm -j 8 -noxios -prod -parallel $parallel -arch $arch
698	echo deuxieme compilation orchidee ; pwd
699	else
700	echo '##########################################################'
701	echo ' Orchidee version too old '
702	echo ' Please update to new version '
703	echo '##########################################################'
704	exit
705	fi
706	# LMDZ
707	cd $LMDZPATH
708	if [ $arch = local ] ; then
709	cd arch
710	sed -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \
711	-e s:"%LINK.*.$":"%LINK $par_comp":1 \
712	-e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \
713	-e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \
714	-e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \
715	-e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \
716	arch-local.fcm > tmp.fcm
717	mv tmp.fcm arch-local.fcm
718	cd ../
719	fi
720	rm -f compile.sh
721	if [ ${hostname:0:5} = ada33 ] ; then echo "module load intel/2013.0" > compile.sh ; fi
722	echo resol=${grid_resolution} >> compile.sh
723	echo ./$makelmdz $OPT_MAKELMDZ -rrtm true -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh
724	chmod +x ./compile.sh ; ./compile.sh
725
726	echo Compilation finished
727
728	fi
729
730	echo LLLLLLLLLLLLLLLLLLLLLLLLLLL
731	if [ "$gfortran" = "gfortran44" ] ; then
732	echo Your gfortran compiler was too old so that the model was automatically
733	echo compiled with gfortran44 instead. It can not be used in parallel mode.
734	echo You can change the compiler at the begining of the install.sh
735	echo script and reinstall.
736	fi
737
738	##################################################################
739	# Verification du succes de la compilation
740	##################################################################
741
742	# Recherche de l'executable dont le nom a change au fil du temps ...
743	gcm=""
744	for exe in gcm.e bin/gcm_${grid_resolution}_phylmd_seq_orch.e bin/gcm_${grid_resolution}_phylmd_seq.e bin/gcm_${grid_resolution}_phylmd_para_mem_orch.e ; do
745	if [ -f $exe ] ; then gcm=$exe ; fi
746	done
747
748	if [ "$gcm" = "" ] ; then
749	echo 'Compilation failed !!'
750	exit
751	else
752	echo '##########################################################'
753	echo 'Compilation successfull !! '
754	echo '##########################################################'
755	echo The executable is $gcm
756	fi
757
758	##################################################################
759	# Below, we run a benchmark test (if bench=0)
760	##################################################################
761
762	if [ $bench != 0 ] ; then
763
764	echo '##########################################################'
765	echo ' Running a test run '
766	echo '##########################################################'
767
768	\rm -rf BENCH${grid_resolution}
769	bench=bench_lmdz_${grid_resolution}
770	echo install.sh avant_chargement_bench `date`
771	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$bench.tar.gz
772	myget $bench.tar.gz
773	echo install.sh after bench download `date`
774	tar xvf $bench.tar.gz
775
776	cp $gcm BENCH${grid_resolution}/gcm.e
777
778
779	cd BENCH${grid_resolution}
780	# On cree le fichier bench.sh au besoin
781	# Dans le cas 48x36x39 le bench.sh existe deja en parallele
782
783	if [ "$grid_resolution" = "48x36x39" ] ; then
784	echo On ne touche pas au bench.sh
785	# But we have to adapt "run_local.sh" for $mpirun
786	sed -e "s@mpirun@$mpirun@g" run_local.sh > tmp
787	mv -f tmp run_local.sh
788	chmod u=rwx run_local.sh
789	elif [ "${parallel:0:3}" = "mpi" ] ; then
790	# Lancement avec deux procs mpi et 2 openMP
791	echo "export OMP_STACKSIZE=800M" > bench.sh
792	if [ "${parallel:4:3}" = "omp" ] ; then
793	echo "export OMP_NUM_THREADS=2" >> bench.sh
794	fi
795	echo "ulimit -s unlimited" >> bench.sh
796	echo "$mpirun -np 2 gcm.e > listing 2>&1" >> bench.sh
797	else
798	echo "./gcm.e > listing 2>&1" > bench.sh
799	fi
800	echo EXECUTION DU BENCH
801	date ; ./bench.sh > out.bench 2>&1 ; date
802	tail listing
803
804
805	echo '##########################################################'
806	echo 'Simulation finished in' `pwd`
807	echo 'You have compiled with:'
808	cat ../compile.sh
809	if [ $parallel = "none" ] ; then
810	echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e'
811	echo 'or ./bench.sh'
812	else
813	echo 'You may re-run it with : '
814	echo 'cd ' `pwd` '; ./bench.sh'
815	echo 'ulimit -s unlimited'
816	echo 'export OMP_NUM_THREADS=2'
817	echo 'export OMP_STACKSIZE=800M'
818	echo "$mpirun -np 2 gcm.e "
819	fi
820	echo '##########################################################'
821
822	fi
823
824
825	#################################################################
826	# Installation eventuelle du 1D
827	#################################################################
828
829	if [ $SCM = 1 ] ; then
830	cd $MODEL
831	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/1D.tar.gz
832	myget 1D.tar.gz
833	tar xvf 1D.tar.gz
834	cd 1D
835	./run.sh
836	fi

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