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source: BOL/script_install/install_lmdz.sh @ 4434

Last change on this file since 4434 was 4427, checked in by Laurent Fairhead, 22 months ago
Adataption of script to r4426 and modified arch.path files
Property svn:executable set to ``*
File size: 56.7 KB

Rev	Line
[4210]	1	#!/bin/bash
	2
	3	#set -vx
	4
	5	###########################################################################
	6	# Author : Laurent Fairhead et Frédéric Hourdin
	7	# Usage : install_lmdz.sh -help
	8	#
	9	# bash installation script of the LMDZ model on different computer types :
	10	# Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS)
	11	#
	12	# The model is downloaded in the following directory tree
	13	# $MODEL/modipsl/modeles/...
	14	# using the "modipsl" infrastructure created by the "IPSL"
	15	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
	16	# activities.
	17	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
	18	# components.
	19	#
	20	# The sources of the models can be found in the "modeles" directory.
[4218]	21	# In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of
	22	# input-outputs using the NetCDF library).
[4210]	23	#
	24	# The script downloads various source files (including a version of NetCDF)
	25	# and utilities, compiles the model, and runs a test simulation in a
	26	# minimal configuration.
	27	#
	28	# Prerequisites : pgf90/gfortran, bash or ksh, wget , gunzip, tar, ...
	29	#
	30	# Modif 18/11/2011
	31	# changes for option real 8.
	32	# We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
	33	# but with -r4 for netcdf. Variable real must be set to
	34	# r4 or r8 at the beginning of the script below.
	35	#
	36	###########################################################################
	37
	38	echo install_lmdz.sh DEBUT `date`
	39	set -e
	40
	41	################################################################
	42	# Choice of installation options
	43	################################################################
	44
	45	################################################################
	46	# A function to fetch files either locally or on the internet
	47	################################################################
	48	function myget { #1st and only argument should be file name
[4215]	49	# Path on local computer where to look for the datafile
	50	if [ -f /u/lmdz/WWW/LMDZ/pub/$1 ] ; then
[4405]	51	\cp -f -p /u/lmdz/WWW/LMDZ/pub/$1 .
[4215]	52	elif [ -f ~/LMDZ/pub/$1 ] ; then
[4405]	53	\cp -f -p ~/LMDZ/pub/$1 .
[4215]	54	else
[4405]	55	wget --no-check-certificate -nv http://lmdz.lmd.jussieu.fr/pub/$1
	56	save_pub_locally=0
	57	if [ $save_pub_locally = 1 ] ; then # saving wget files on ~/LMDZ/pub
	58	dir=~/LMDZ/pub/`dirname $1` ; mkdir -p $dir
	59	cp -r `basename $1` $dir
	60	fi
[4210]	61	fi
	62	}
	63
	64	# 04_2021 : tester si r4 marche encore !
	65	#real=r4
	66	real=r8
	67
	68
	69	#########################################################################
	70	# Valeur par défaut des parametres
	71	#########################################################################
	72	svn=""
	73	#version=trunk
[4375]	74	version=20221201.trunk
[4210]	75
	76	getlmdzor=1
[4237]	77	netcdf=1 # 1: for automatic installation;
[4267]	78	# or 0: do not install NetCDF and look for it in standard locations;
	79	# or absolute path: look for NetCDF there
[4210]	80	check_linux=1
	81	ioipsl=1
	82	bench=1
	83	pclinux=1
	84	pcmac=0 # default: not on a Mac
	85	compiler=gfortran
[4269]	86	if [ `gfortran -dumpversion \| cut -d. -f1` -ge 11 ] ; then allow_arg_mismatch="-fallow-argument-mismatch" ; fi
[4210]	87	SCM=0
	88	# surface/vegetation scheme treatment
	89	# controlled by the single variable veget which can have the following values
	90	# - NONE: bucket scheme (default)
	91	# - CMIP6: orchidee version used in CMIP exercise, rev 5661
	92	# - number: orchidee version number
	93	veget=NONE
	94	# choose the resolution for the bench runs
	95	# grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE)
	96	# 96x71x19 standard configuration
	97	grid_resolution=144x142x79
	98	grid_resolution=96x95x39
	99	grid_resolution=48x36x19
	100	grid_resolution=32x32x39
	101	# choose the physiq version you want to test
	102	#physiq=NPv6.0.14splith
	103	physiq=
	104
	105	## parallel can take the values none/mpi/omp/mpi_omp
	106	parallel=mpi_omp
	107	parallel=none
	108	idris_acct=lmd
[4417]	109	trusting=testing
[4210]	110	OPT_GPROF=""
	111	OPT_MAKELMDZ=""
	112	MODEL=""
	113
	114	## also compile XIOS? (and more recent NetCDF/HDF5 libraries) Default=no
	115	with_xios="n"
	116	opt_makelmdz_xios=""
	117
	118	## compile with oldrad/rrtm/ecrad radiatif code (Default=rrtm)
	119	rad=rrtm
	120
	121	## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0)
	122	compile_with_fcm=1
	123
	124	#Compilation with Cosp (cosp=NONE/v1/v2 ; default=NONE)
	125	cosp=NONE
	126	opt_cosp=""
	127
	128	# Check if on a Mac
	129	if [ `uname` = "Darwin" ]
	130	then
	131	pcmac=1
	132	export MAKE=make
	133	fi
	134	#echo "pcmac="$pcmac
	135
	136	env_file=""
	137
	138	#########################################################################
	139	# Options interactives
	140	#########################################################################
	141	while (($# > 0))
[4215]	142	do
	143	case $1 in
[4405]	144	"-h") cat <<........fin
[4210]	145	$0 [ -v version ] [ -r svn_release ]
	146	[ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ]
	147	[-name LOCAL_MODEL_NAME] [-gprof] [-opt_makelmdz] [-rad RADIATIF]
	148
	149	-v "version" like 20150828.trunk
	150	see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk
	151
	152	-r "svn_release" : either the svn release number or "last"
	153
	154	-compiler gfortran\|ifort\|pgf90 (default: gfortran)
	155
	156	-parallel PARA : can be mpi_omp (mpi with openMP) or none (for sequential)
	157
	158	-d GRID_RESOLUTION should be among the available benchs if -bench 1
	159	among which : 48x36x19, 48x36x39
	160	if wanting to run a bench simulation in addition to compilation
	161	default : 48x36x19
	162
	163	-bench activating the bench or not (0/1). Default 1
	164
[4421]	165	-testing/unstable
[4417]	166
[4210]	167	-name LOCAL_MODEL_NAME : default = LMDZversion.release
	168
[4211]	169	-netcdf 0, 1 or PATH
[4405]	170	0: do not download NetCDF, look for it in standard locations
	171	1: download and compile NetCDF
	172	PATH: full path to an existing installed NetCDF library
[4210]	173
	174	-xios also download and compile the XIOS library
	175	(requires the NetCDF4-HDF5 library, also installed by default)
	176	(requires to also have -parallel mpi_omp)
	177
	178	-gprof to compile with -pg to enable profiling with gprof
	179
	180	-cosp to run without our with cospv1 or cospv2 [none/v1/v2]
	181
	182	-rad RADIATIF can be oldrad, rrtm or ecrad radiatif code
	183
	184	-nofcm to compile without fcm
	185
	186	-SCM install 1D version automatically
	187
	188	-debug compile everything in debug mode
	189
	190	-opt_makelmdz to call makelmdz or makelmdz_fcm with additional options
	191
	192	-physiq to choose which physics package to use
	193
	194	-env_file specify an arch.env file to overwrite the existing one
	195
	196	-veget surface model to run [NONE/CMIP6/xxxx]
	197
	198	........fin
[4405]	199	exit ;;
	200	"-v") version=$2 ; shift ; shift ;;
	201	"-r") svn=$2 ; shift ; shift ;;
	202	"-compiler") compiler=$2
[4215]	203	case $compiler in
[4405]	204	"gfortran"\|"ifort"\|"pgf90") compiler=$2 ; shift
	205	shift ;;
	206	*) echo "Only gfortran , ifort or pgf90 for the " \
	207	"compiler option"
	208	exit
[4215]	209	esac ;;
[4405]	210	"-d") grid_resolution=$2 ; shift ; shift ;;
	211	"-gprof") OPT_GPROF="-pg" ; shift ;;
[4417]	212	"-unstable"\|"-testing") trusting=`echo $1 \| cut -c2-` ; shift ;;
[4405]	213	"-cosp") cosp=$2
	214	case $cosp in
[4215]	215	"none"\|"v1"\|"v2") cosp=$2 ; shift ; shift ;;
	216	*) echo Only none v1 v2 for cosp option ; exit
[4405]	217	esac ;;
	218	"-nofcm") compile_with_fcm=0 ; echo This option will be reactivated soon '(promesse du 8dec2022)' ; exit 1 ; shift ;;
	219	"-SCM") SCM=1 ; shift ;;
	220	"-opt_makelmdz") OPT_MAKELMDZ="$2" ; shift ; shift ;;
	221	"-rrtm") rrtm="$2"
	222	if [ "$2" = "false" ] ; then
	223	rad="oldrad"
	224	else
	225	rad="rrtm"
	226	fi
	227	shift ; shift ;;
	228	"-rad") rad=$2
	229	case $rad in
[4215]	230	"oldrad"\|"rrtm"\|"ecrad") rad=$2 ; shift ; shift ;;
	231	*) echo Only oldrad rrtm ecrad for rad option ; exit
[4405]	232	esac ;;
	233	"-parallel") parallel=$2
[4215]	234	case $parallel in
[4405]	235	"none"\|"mpi"\|"omp"\|"mpi_omp") parallel=$2 ; shift
	236	shift ;;
	237	*) echo Only none mpi omp mpi_omp for the parallel \
	238	option
	239	exit
[4215]	240	esac ;;
[4405]	241	"-bench") bench=$2 ; shift ; shift ;;
	242	"-debug") optim=-debug ; shift ;;
	243	"-name") MODEL=$2 ; shift ; shift ;;
	244	"-netcdf") case $2 in
[4398]	245	0\|1) netcdf=$2 ;;
	246	*) netcdf=`ls -d $2` ; if [ $? != 0 ] ; then echo No directory $2 ; exit 1 ; fi
	247	esac
	248	shift ; shift ;;
[4405]	249	"-physiq") physiq=$2 ; shift ; shift ;;
	250	"-xios") with_xios="y" ; shift ;;
	251	"-env_file") env_file=$2 ; shift ; shift ;;
	252	"-veget") veget=$2 ; shift ; shift ;;
	253	*) ./install_lmdz.sh -h ; exit
[4215]	254	esac
[4210]	255	done
	256
[4218]	257	# Option de compilation du rayonnement : depend de $mysvn ><= r4185,
	258	# sera donc definie plus bas
	259
[4210]	260	#opt_rad=""
	261	#case $rad in
	262	# rrtm) opt_rad="-rad rrtm" ;;
	263	# ecrad) opt_rad="-rad ecrad" ;;
	264	#esac
	265
	266
	267	# Option de compilation pour Cosp
	268	opt_cosp=""
	269	case cosp in
[4215]	270	v1) opt_cosp="-cosp true" ;;
	271	v2) opt_cosp="-cospv2 true" ;;
[4210]	272	esac
	273
	274	# Check on veget version
	275	#if [ "$veget" != 'NONE' -a "$veget" != "CMIP6" -a "$veget" != +([0-9]) ] ; then
	276	if [ $veget != 'NONE' -a $veget != "CMIP6" ] ; then
	277	re='^[0-9]+$'
	278	if ! [[ $veget =~ $re ]] ; then
[4405]	279	echo 'Valeur de l option veget non valable'
	280	exit
[4210]	281	fi
	282	fi
	283
	284	#Define veget-related suffix for gcm name
	285	if [ "$veget" = 'NONE' ] ; then
	286	suff_orc=''
[4218]	287	#For use with tutorial, orchidee_rev is also defined (will be
	288	#written in surface_env at the end of the script)
[4210]	289	orchidee_rev=''
	290	else
	291	suff_orc='_orch'
	292	fi
	293
	294
[4218]	295	if [ $parallel = none ] ; then
	296	sequential=1; suff_exe='_seq'
	297	else
	298	sequential=0; suff_exe='_para_mem'
	299	fi
[4210]	300
	301	#Chemin pour placer le modele
	302	if [ "$MODEL" = "" ] ; then MODEL=./LMDZ$version$svn$optim ; fi
	303
	304
	305	arch=local
	306
	307
	308	if [ $compiler = g95 ] ; then echo g95 is not supported anymore ; exit ; fi
	309
	310	################################################################
	311	# Specificite des machines
	312	################################################################
	313
	314	hostname=`hostname`
	315	if [ "$pclinux" = 1 ] ; then o_ins_make="-t g95" ; else o_ins_make="" ; fi
	316
	317	case ${hostname:0:5} in
	318
[4215]	319	jean-) compiler="mpiifort" ;
	320	par_comp="mpiifort" ;
	321	o_ins_make="-t jeanzay" ;
	322	make=gmake ;
	323	module purge
	324	module load intel-compilers/19.0.4 ;
	325	#module load intel-mpi/19.0.4 ;
	326	#module load intel-mkl/19.0.4 ;
	327	module load hdf5/1.10.5-mpi ;
	328	module load netcdf/4.7.2-mpi ;
	329	module load netcdf-fortran/4.5.2-mpi ;
	330	module load subversion/1.9.7 ;
	331	export NETCDF_LIBDIR=./
	332	export NETCDFFORTRAN_INCDIR=./
	333	export NETCDFFORTRAN_LIBDIR=./
	334	arch=X64_JEANZAY ;;
[4210]	335
[4215]	336	cicla\|camel) compiler="gfortran" ;
[4405]	337	module purge
	338	module load gnu/10.2.0
	339	module load openmpi/4.0.5
	340	module load hdf5/1.10.7-mpi
	341	module load netcdf-c/4.7.4-mpi
	342	module load netcdf-fortran/4.5.3-mpi
	343	netcdf=/net/nfs/tools/PrgEnv/linux-scientific6-x86_64/gcc-10.2.0/netcdf-fortran-4.5.3-k3drgfqok3lip62hnm3tsyof4cjen5sk
	344	module load svn/1.14.0
[4211]	345
[4405]	346	if [ $parallel != none ] ; then
	347	root_mpi=/net/nfs/tools/meso-sl6/openmpi/4.0.5-gcc-10.2.0
	348	path_mpi=$root_mpi/bin ;
	349	par_comp=${path_mpi}/mpif90 ;
	350	mpirun=${path_mpi}/mpirun ;
	351	fi ;
	352	arch=local ;
	353	make=make ;
	354	o_ins_make="-t g95" ;;
[4210]	355
[4215]	356	*) if [ $parallel = none -o -f /usr/bin/mpif90 ] ; then
	357	path_mpi=`which mpif90 \| sed -e s:/mpif90::` ;
	358	if [ -d /usr/lib64/openmpi ] ; then
	359	root_mpi="/usr/lib64/openmpi"
	360	else
	361	root_mpi="/usr"
	362	fi
	363	else
[4405]	364	echo "Cannot find mpif90" ;
	365	if [ $parallel = none ] ; then exit ; fi ;
[4215]	366	fi ;
	367	if [ $parallel != none ] ; then
[4405]	368	root_mpi=$(which mpif90 \| sed -e s:/bin/mpif90::)
	369	path_mpi=$(which mpif90 \| sed -e s:/mpif90::)
	370	export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH
[4215]	371	fi
	372	par_comp=${path_mpi}/mpif90 ;
	373	mpirun=${path_mpi}/mpirun ;
	374	arch=local ;
	375	make=make ;
	376	o_ins_make="-t g95"
[4210]	377	esac
	378
	379	# Flags for parallelism:
	380	if [ $parallel != none ] ; then
[4215]	381	# MPI_LD are the flags needed for linking with MPI
	382	MPI_LD="-L${root_mpi}/lib -lmpi"
	383	if [ "$compiler" = "gfortran" ] ; then
[4405]	384	# MPI_FLAGS are the flags needed for compilation with MPI
	385	MPI_FLAGS="-fcray-pointer"
	386	# OMP_FLAGS are the flags needed for compilation with OpenMP
	387	OMP_FLAGS="-fopenmp -fcray-pointer"
	388	# OMP_LD are the flags needed for linking with OpenMP
	389	OMP_LD="-fopenmp"
[4215]	390	elif [ "$compiler" = "ifort" ] ; then
[4405]	391	MPI_FLAGS=""
	392	OMP_FLAGS="-openmp"
	393	OMP_LD="-openmp"
[4215]	394	else # pgf90
[4405]	395	MPI_FLAGS=""
	396	OMP_FLAGS="-mp"
	397	OMP_LD="-mp"
[4215]	398	fi
[4210]	399	fi
	400
	401	#####################################################################
	402	# Test for old gfortran compilers
	403	# If the compiler is too old (older than 4.3.x) we test if the
	404	# temporary gfortran44 patch is available on the computer in which
	405	# case the compiler is changed from gfortran to gfortran44
	406	# Must be aware than parallelism can not be activated in this case
	407	#####################################################################
	408
	409	if [ "$compiler" = "gfortran" ] ; then
[4215]	410	gfortran=gfortran
	411	gfortranv=`gfortran --version \| \
[4210]	412	head -1 \| awk ' { print $NF } ' \| awk -F. ' { print $1 * 10 + $2 } '`
[4215]	413	if [ $gfortranv -le 43 ] ; then
[4405]	414	echo ERROR : Your gfortran compiler is too old
	415	echo 'Please choose a new one (ifort) and change the line'
	416	echo compiler=xxx
	417	echo in the install_lmdz.sh script and rerun it
	418	if [ `which gfortran44 \| wc -w` -ne 0 ] ; then
[4215]	419	gfortran=gfortran44
[4405]	420	else
[4215]	421	echo gfotran trop vieux ; exit
[4405]	422	fi
[4215]	423	fi
	424	compiler=$gfortran
[4210]	425	fi
	426	#####################################################################
	427
	428	## if also compiling XIOS, parallel must be mpi_omp
	429	if [ "$with_xios" = "y" -a "$parallel" != "mpi_omp" ] ; then
[4215]	430	echo "Error, you must set -parallel mpi_omp if you want XIOS"
	431	exit
[4210]	432	fi
	433
	434	if [ "$with_xios" = "y" ] ; then
[4215]	435	opt_makelmdz_xios="-io xios"
[4210]	436	fi
	437
	438	if [ "$cosp" = "v2" -a "$with_xios" = "n" ] ; then
[4215]	439	echo "Error, Cospv2 cannot run without Xios"
	440	exit
[4210]	441	fi
	442
	443	echo '################################################################'
	444	echo Choix des options de compilation
	445	echo '################################################################'
	446
	447	export FC=$compiler
	448	export F90=$compiler
	449	export F77=$compiler
	450	export CPPFLAGS=
	451	OPTIMNC=$OPTIM
	452	BASE_LD="$OPT_GPROF"
	453	OPTPREC="$OPT_GPROF"
[4218]	454	ARFLAGS="rs"
[4418]	455	if [ "`lsb_release -i -s`" = "Ubuntu" ] ; then
[4398]	456	if [ "`lsb_release -r -s \| cut -d. -f1`" -ge 16 ] ; then
	457	ARFLAGS="rU"
[4218]	458	fi
	459	fi
[4210]	460
	461	if [ "$compiler" = "$gfortran" ] ; then
[4267]	462	OPTIM="-O3 $allow_arg_mismatch"
	463	OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -fbacktrace -finit-real=snan $allow_arg_mismatch"
	464	OPTDEV="-Wall -fbounds-check $allow_arg_mismatch"
	465	fmod='I '
	466	OPTPREC="$OPTPREC -cpp -ffree-line-length-0"
	467	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE" ; fi
	468	export F90FLAGS=" -ffree-form $OPTIMNC"
	469	export FFLAGS=" $OPTIMNC"
	470	export CC=gcc
	471	export CXX=g++
	472	export fpp_flags="-P -C -traditional -ffreestanding"
[4210]	473
	474	elif [ $compiler = mpif90 ] ; then
[4215]	475	OPTIM='-O3'
	476	OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all"
	477	OPTDEV="-Wall -fbounds-check"
	478	BASE_LD="$BASE_LD -lblas"
	479	fmod='I '
[4218]	480	if [ $real = r8 ] ; then
[4405]	481	OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE -fcray-pointer"
[4218]	482	fi
[4215]	483	export F90FLAGS=" -ffree-form $OPTIMNC"
	484	export FFLAGS=" $OPTIMNC"
	485	export CC=gcc
	486	export CXX=g++
[4210]	487
	488	elif [ $compiler = pgf90 ] ; then
[4215]	489	OPTIM='-O2 -Mipa -Munroll -Mnoframe -Mautoinline -Mcache_align'
	490	OPTDEB='-g -Mdclchk -Mbounds -Mchkfpstk -Mchkptr -Minform=inform -Mstandard -Ktrap=fp -traceback'
	491	OPTDEV='-g -Mbounds -Ktrap=fp -traceback'
	492	fmod='module '
	493	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -r8 -DNC_DOUBLE" ; fi
	494	export CPPFLAGS="-DpgiFortran"
	495	export CC=pgcc
	496	export CFLAGS="-O2 -Msignextend"
	497	export CXX=pgCC
	498	export CXXFLAGS="-O2 -Msignextend"
	499	export FFLAGS="-O2 $OPTIMNC"
	500	export F90FLAGS="-O2 $OPTIMNC"
	501	compile_with_fcm=1
[4210]	502
[4221]	503	elif [[ $compiler = ifort \|\| $compiler = mpiifort ]] ; then
[4215]	504	OPTIM="-O2 -fp-model strict -ip -align all "
	505	OPTDEV="-p -g -O2 -traceback -fp-stack-check -ftrapuv -check"
	506	OPTDEB="-g -no-ftz -traceback -ftrapuv -fp-stack-check -check"
	507	fmod='module '
	508	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi
	509	export CPP="icc -E"
	510	export FFLAGS="-O2 -ip -fpic -mcmodel=large"
	511	export FCFLAGS="-O2 -ip -fpic -mcmodel=large"
	512	export CC=icc
	513	export CFLAGS="-O2 -ip -fpic -mcmodel=large"
	514	export CXX=icpc
	515	export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
	516	export fpp_flags="-P -traditional"
	517	# Pourquoi forcer la compilation fcm. Marche mieux sans
	518	#compile_with_fcm=1
[4210]	519	else
[4215]	520	echo unexpected compiler $compiler ; exit
[4210]	521	fi
	522
	523	OPTIMGCM="$OPTIM $OPTPREC"
	524
	525	hostname=`hostname`
	526
	527	##########################################################################
	528	# If installing on known machines such as Jean-Zay at IDRIS,
	529	# don't check for available software and don't install netcdf
	530	if [ ${hostname:0:5} = jean- ] ; then
[4215]	531	netcdf=0 # no need to recompile netcdf, alreday available
	532	check_linux=0
	533	pclinux=0
	534	ioipsl=0 # no need to recompile ioipsl, already available
	535	#netcdf="/smplocal/pub/NetCDF/4.1.3"
	536	compiler="mpiifort"
	537	fmod='module '
	538	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -i4 -r8 -DNC_DOUBLE" ; fi
	539	OPTIM="-auto -align all -O2 -fp-model strict -xHost "
	540	OPTIMGCM="$OPTIM $OPTPREC"
[4210]	541	fi
	542	##########################################################################
	543
	544
	545	mkdir -p $MODEL
	546	echo $MODEL
	547	MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary
	548
	549
	550	if [ "$check_linux" = 1 ] ; then
[4372]	551	echo '################################################################'
[4215]	552	echo Check if required software is available
	553	echo '################################################################'
[4210]	554
[4215]	555	#### Ehouarn: test if the required shell is available
	556	#### Maj FH-LF-AS 2021-04 : default=bash ; if bash missing, use ksh
	557	use_shell="bash" # default
	558	if [ "`which bash`" = "" ] ; then
[4405]	559	echo "no bash ; we will use ksh"
	560	use_shell="ksh"
	561	if [ "`which ksh`" = "" ] ; then
	562	echo "bash (or ksh) needed!! Install it!"
	563	exit
	564	fi
[4215]	565	fi
[4210]	566
[4372]	567	for logiciel in wget tar gzip make $compiler gcc cmake m4 c++ ; do
[4405]	568	if [ "`which $logiciel`" = "" ] ; then
	569	echo You must first install $logiciel on your system
	570	exit
	571	fi
[4215]	572	done
[4210]	573
[4215]	574	if [ $pclinux = 1 ] ; then
[4405]	575	cd $MODEL
	576	cat <<eod > tt.f90
[4210]	577	print*,'coucou'
	578	end
	579	eod
[4405]	580	$compiler tt.f90 -o a.out
	581	./a.out >\| tt
	582	if [ "`cat tt \| sed -e 's/ //g' `" != "coucou" ] ; then
	583	echo problem installing with compiler $compiler ; exit ; fi
	584	\rm tt a.out tt.f90
[4215]	585	fi
[4210]	586	fi
	587
	588	###########################################################################
	589	if [ $getlmdzor = 1 -a ! -d $MODEL/modipsl ] ; then
[4267]	590	###########################################################################
	591	echo '##########################################################'
	592	echo Download a slightly modified version of LMDZ
	593	echo '##########################################################'
	594	cd $MODEL
	595	getlog=`pwd`/get.log
	596	echo logfile : $getlog
[4417]	597	myget src_archives/$trusting/modipsl.$version.tar.gz >> get.log 2>&1
[4267]	598	echo install_lmdz.sh wget_OK `date`
	599	gunzip modipsl.$version.tar.gz >> get.log 2>&1
[4286]	600	tar xf modipsl.$version.tar >> get.log 2>&1
[4267]	601	\rm modipsl.$version.tar
[4210]	602	fi
	603
	604	###########################################################################
[4217]	605	if [ $netcdf = 1 ] ; then
[4405]	606	###########################################################################
[4215]	607	cd $MODEL
	608	netcdflog=`pwd`/netcdf.log
[4405]	609	echo '----------------------------------------------------------'
[4215]	610	echo Compiling the Netcdf library
[4405]	611	echo '----------------------------------------------------------'
[4215]	612	echo log file : $netcdflog
[4212]	613
[4405]	614	case $compiler in
	615	gfortran) opt1="-compiler gnu" ; opt2="-CC gcc -FC gfortran -CXX g++" ;;
	616	ifort) opt1="-compiler intel" ; opt2="-CC icc -FC ifort -CXX icpc" ;;
	617	pgf90) opt1="-compiler pgf90" ; opt2="-CC pgcc -FC pgf90 -CXX pgCC" ;;
	618	*) echo "unexpected compiler $compiler" for netcdf ; exit 1
	619	esac
[4212]	620
[4405]	621	case $with_xios in
	622	n) script_install_netcdf=install_netcdf4_hdf5_seq.bash
	623	ncdfdir=$MODEL/netcdf4_hdf5_seq
	624	opt_=$opt1 ;;
	625	y) script_install_netcdf=install_netcdf4_hdf5.bash
	626	ncdfdir=$MODEL/netcdf4_hdf5
	627	opt_="$opt2 -MPI $root_mpi" ;;
	628	*) echo with_xios=$with_xios, should be n or y ; exit 1
	629	esac
	630
	631	if [[ ! -d $ncdfdir ]] ; then
[4411]	632	myget script_install/$script_install_netcdf >> $netcdflog 2>&1
[4405]	633	chmod u=rwx $script_install_netcdf
	634	./$script_install_netcdf -prefix $ncdfdir $opt_ >> $netcdflog 2>&1
	635	fi
	636
	637	#----------------------------------------------------------------------------
	638	# LF rajout d'une verrue, pour une raison non encore expliquee,
	639	# la librairie est parfois rangée dans lib64 et non dans lib
	640	# par certains compilateurs
	641	if [ ! -e lib -a -d lib64 ] ; then ln -s lib64 lib; fi
	642	#----------------------------------------------------------------------------
	643
[4215]	644	echo install_lmdz.sh netcdf_OK `date`
[4210]	645
[4405]	646	elif [ $netcdf = 0 ] ; then
[4215]	647	ncdfdir=/usr
[4210]	648	else
[4215]	649	ncdfdir=$netcdf
[4210]	650	fi
	651
[4238]	652	cat >test_netcdf90.f90 <<EOF
[4239]	653	use netcdf
[4238]	654	print *, "NetCDF library version: ", nf90_inq_libvers()
	655	end
	656	EOF
	657
[4405]	658	$compiler -I$ncdfdir/include test_netcdf90.f90 -L$ncdfdir/lib -lnetcdff \
	659	-lnetcdf -Wl,-rpath=$ncdfdir/lib && ./a.out
[4238]	660
	661	if (($? == 0))
	662	then
	663	rm test_netcdf90.f90 a.out
	664	else
	665	echo "Failed test program using NetCDF-Fortran."
	666	echo "You can:"
	667	echo "- check that you have NetCDF-Fortran installed in your system"
	668	echo "- or specify an installation directory with option -netcdf of" \
[4405]	669	"install_lmdz.sh"
[4238]	670	echo "- or download and compile NetCDF-Fortran with option -netcdf 1 of" \
[4405]	671	"install_lmdz.sh"
[4238]	672	exit 1
	673	fi
	674
[4210]	675	#=========================================================================
	676	if [[ ! -f $MODEL/modipsl/lib/libioipsl.a ]]
	677	then
[4215]	678	if [ $ioipsl = 1 ] ; then
[4405]	679	#=====================================================================
	680	echo OK ioipsl=$ioipsl
	681	echo '##########################################################'
	682	echo 'Installing MODIPSL, the installation package manager for the '
	683	echo 'IPSL models and tools'
	684	echo '##########################################################'
	685	echo `date`
[4210]	686
[4405]	687	cd $MODEL/modipsl
	688	\rm -rf lib/*
	689	cd util
	690	cp AA_make.gdef AA_make.orig
	691	F_C="$compiler -c "
	692	if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ]
	693	then
	694	F_C="$compiler -c -cpp "
	695	fi
	696	if [ "$compiler" = "pgf90" ] ; then F_C="$compiler -c -Mpreprocess" ; fi
	697	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
	698	sed -e "s:F_L = g95:F_L = $compiler:" \
	699	-e "s:F_C = g95 -c -cpp:F_C = $F_C": \
	700	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
	701	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= '"$ncdfdir"'/include:' \
	702	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdff -lnetcdf:' \
	703	-e 's:g95 L_O =:g95 L_O = -Wl,-rpath='"$ncdfdir"'/lib:' \
	704	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
	705	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
	706	tmp >\| AA_make.gdef
[4210]	707
[4405]	708	if [ $pcmac == 1 ]
	709	then
	710	cp AA_make.gdef tmp
	711	sed -e 's/rpath=/rpath,/g' tmp > AA_make.gdef
	712	fi
[4210]	713
	714
[4405]	715	# We use lines for g95 even for the other compilers to run ins_make
	716	if [ "$use_shell" = "ksh" ] ; then
	717	./ins_make $o_ins_make
	718	else # bash
	719	sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash
	720	if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then
	721	# Bidouille pour compiler sur ada des vieux modipsl.tar
	722	echo 'Warning jean-zay not in AA_make.gdef'
	723	echo 'Think about updating'
	724	exit 1
	725	fi
[4210]	726
[4405]	727	chmod u=rwx ins_make.bash
	728	./ins_make.bash $o_ins_make
	729	fi # of if [ "$use_shell" = "ksh" ]
[4210]	730
[4405]	731	echo install_lmdz.sh MODIPSL_OK `date`
[4210]	732
[4405]	733	cd $MODEL/modipsl/modeles/IOIPSL/src
	734	ioipsllog=`pwd`/ioipsl.log
	735	echo '##########################################################'
	736	echo 'Compiling IOIPSL, the interface library with Netcdf'
	737	echo '##########################################################'
	738	echo `date`
	739	echo log file : $ioipsllog
[4210]	740
[4405]	741	if [ "$use_shell" = "bash" ] ; then
	742	cp Makefile Makefile.ksh
	743	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
	744	fi
	745	# if [ "$pclinux" = 1 ] ; then
	746	# Build IOIPSL modules and library
	747	$make clean
	748	$make > $ioipsllog 2>&1
	749	if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then
	750	# copy module files to lib
	751	cp -f *.mod ../../../lib
	752	fi
	753	# Build IOIPSL tools (ie: "rebuild", if present)
	754	if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then
	755	cd $MODEL/modipsl/modeles/IOIPSL/tools
	756	# adapt Makefile & rebuild script if in bash
	757	if [ "$use_shell" = "bash" ] ; then
	758	cp Makefile Makefile.ksh
	759	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
	760	cp rebuild rebuild.ksh
	761	sed -e 's:/bin/ksh:/bin/bash:g' \
	762	-e 's:print -u2:echo:g' \
	763	-e 's:print:echo:g' rebuild.ksh > rebuild
	764	fi
	765	$make clean
	766	$make > $ioipsllog 2>&1
	767	fi
	768	# fi # of if [ "$pclinux" = 1 ]
[4210]	769
[4215]	770	else # of if [ $ioipsl = 1 ]
[4405]	771	if [ ${hostname:0:5} = jean- ] ; then
	772	cd $MODEL/modipsl
	773	cd util
[4215]	774	if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then
[4405]	775	echo 'Warning jean-zay not in AA_make.gdef'
	776	echo 'Think about updating'
	777	exit 1
[4215]	778	fi
	779	./ins_make $o_ins_make
[4405]	780	# Compile IOIPSL on jean-zay
[4215]	781	cd $MODEL/modipsl/modeles/IOIPSL/src
	782	gmake > ioipsl.log
	783	cd $MODEL/modipsl/modeles/IOIPSL/tools
	784	gmake > ioipsl.log
[4210]	785
[4405]	786	fi
	787	echo install_lmdz.sh ioipsl_OK `date`
[4215]	788	fi # of if [ $ioipsl = 1 ]
[4210]	789	fi
	790	# Saving ioipsl lib for possible parallel compile
[4215]	791	cd $MODEL/modipsl
	792	tar cf ioipsl.tar lib/ bin/
[4210]	793
	794	#=========================================================================
	795	if [ "$with_xios" = "y" ] ; then
[4215]	796	echo '##########################################################'
	797	echo 'Compiling XIOS'
	798	echo '##########################################################'
	799	cd $MODEL/modipsl/modeles
	800	xioslog=`pwd`/xios.log
	801	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash
[4411]	802	myget script_install/install_xios.bash
[4215]	803	chmod u=rwx install_xios.bash
	804	if [ ${hostname:0:5} = jean- ] ; then
[4405]	805	svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-2.5 \
	806	XIOS
	807	cd XIOS/arch
	808	svn update
	809	cd ..
	810	echo "Compiling XIOS, start" `date` \
	811	"(it takes about 20 min on Jean-Zay)"
	812	echo "log file: $xioslog"
	813	./make_xios --prod --arch $arch --job 4 > xios.log 2>&1
[4215]	814	else
[4405]	815	./install_xios.bash -prefix $MODEL/modipsl/modeles \
	816	-netcdf ${ncdfdir} -hdf5 ${ncdfdir} \
	817	-MPI $root_mpi -arch $arch > xios.log 2>&1
[4215]	818	fi # of case Jean-Zay
	819	if [ -f XIOS/lib/libxios.a ] ; then
[4405]	820	echo "XIOS library successfully generated"
	821	echo install_lmdz.sh XIOS_OK `date`
[4215]	822	fi
[4210]	823	fi
	824
	825	#============================================================================
	826	veget_version=false
	827	if [ "$veget" != 'NONE' ] ; then
[4215]	828	cd $MODEL/modipsl/modeles/ORCHIDEE
	829	set +e ; svn upgrade ; set -e
	830	if [ "$veget" = "CMIP6" ] ; then
[4405]	831	veget_version=orchidee2.0
	832	orchidee_rev=6592
[4215]	833	else # specific orchidee revision newer than CMIP6, on 2_1 or 2_2 branches
[4405]	834	veget_version=orchidee2.1
	835	orchidee_rev=$veget
	836	if [ $veget -lt 4465 ] ; then
	837	echo 'Stopping, ORCHIDEE version too old, script needs work on ' \
	838	'the CPP flags to pass to makelmdz'
	839	exit 1
	840	fi
	841	set +e
	842	# which branch is my version on?
	843	orcbranch=`svn log -v -q svn://forge.ipsl.jussieu.fr/orchidee/ -r $veget \|grep ORCHIDEE \|head -1\| sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' \| awk '{print $2}'`
	844	# switch to that branch
	845	echo IF YOU INSTALL ORCHIDEE THE VERY FIRST TIME, ASK for PASSWORD at \
	846	orchidee-help@listes.ipsl.fr
	847	svn switch -r $veget --accept theirs-full \
	848	svn://forge.ipsl.jussieu.fr/orchidee/$orcbranch
	849	svn log -r $veget \| grep $veget
	850	if [ $? -gt 0 ] ; then
[4218]	851	echo 'Cannot update ORCHIDEE as not on the right branch for ' \
[4405]	852	'ORCHIDEE'
[4215]	853	exit
[4405]	854	fi
	855	set -e
	856	set +e ; svn update -r $veget ; set -e
[4215]	857	fi
	858	# Correctif suite debug Jean-Zay
[4218]	859	sed -i -e 's/9010 FORMAT(A52,F17.14)/9010 FORMAT(A52,F20.14)/' \
[4405]	860	src_stomate/stomate.f90
[4215]	861	opt_orc="-prod" ; if [ "$optim" = "-debug" ] ; then opt_orc="-debug" ; fi
[4210]	862
[4215]	863	orchideelog=`pwd`/orchidee.log
	864	echo '########################################################'
	865	echo 'Compiling ORCHIDEE, the continental surface model '
	866	echo '########################################################'
	867	echo Start of the first compilation of orchidee, in sequential mode: `date`
	868	echo log file : $orchideelog
[4210]	869
[4215]	870	export ORCHPATH=`pwd`
	871	xios_orchid="-noxios"
	872	if [ "$with_xios" = "y" ] ; then
[4405]	873	xios_orchid="-xios"
[4215]	874	fi
	875	if [ -d tools ] ; then
[4405]	876	###################################################################
	877	# Pour les experts qui voudraient changer de version d'orchidee.
	878	# Attention : necessite d'avoir le password pour orchidee
[4210]	879
[4405]	880	# Correctif suite debug Jean-Zay
	881	if [ -f src_global/time.f90 ] ; then
	882	sed -i -e 's/CALL tlen2itau/\!CALL tlen2itau/' src_global/time.f90
	883	fi
	884	###################################################################
	885	if [ "$veget_version" == "false" ] ; then
	886	veget_version=orchidee2.0
	887	fi
	888	cd arch
	889	sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \
	890	-e s:"%LINK .*.$":"%LINK $compiler":1 \
	891	-e s:"%FPP_FLAGS .*.$":"%FPP_FLAGS $fpp_flags":1 \
	892	-e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \
	893	-e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \
	894	-e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \
	895	-e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \
	896	-e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \
	897	-e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \
	898	arch-gfortran.fcm > arch-local.fcm
	899	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" \
	900	> arch-local.path
	901	echo "NETCDF_INCDIR=${ncdfdir}/include" >> arch-local.path
	902	echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path
	903	echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path
	904	echo 'XIOS_INCDIR=${ORCHDIR}/../XIOS/inc' >> arch-local.path
	905	echo 'XIOS_LIBDIR="${ORCHDIR}/../XIOS/lib -lxios"' >> arch-local.path
	906	cd ../
[4210]	907
[4405]	908	echo ./makeorchidee_fcm -j $xios_orchid $opt_orc -parallel none \
	909	-arch $arch
	910	./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel none \
	911	-arch $arch > $orchideelog 2>&1
	912	pwd
[4215]	913	else # of "if [ -d tools ]"
[4405]	914	if [ -d src_parallel ] ; then
	915	liste_src="parallel parameters global stomate sechiba driver"
	916	if [ "$veget_version" == "false" ] ; then
	917	veget_version=orchidee2.0
	918	fi
	919	fi
	920	for d in $liste_src ; do
	921	src_d=src_$d
	922	echo src_d $src_d
	923	echo ls ; ls
	924	if [ ! -d $src_d ] ; then
	925	echo Problem orchidee : no $src_d ; exit
	926	fi
	927	cd $src_d ; \rm -f *.mod make ; $make clean
	928	$make > $orchideelog 2>&1
	929	if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then
	930	cp -f *.mod ../../../lib
	931	fi
	932	cd ..
	933	done
[4215]	934	fi # of "if [ -d tools ]"
	935	echo install_lmdz.sh orchidee_compil_seq_OK `date`
[4210]	936	fi # of if [ "$veget" != 'NONE' ]
	937
	938
	939	#============================================================================
	940	# Ehouarn: the directory name LMDZ* depends on version/tar file...
	941	if [ -d $MODEL/modipsl/modeles/LMD* ] ; then
[4215]	942	echo '###############################################################'
	943	echo 'Preparing LMDZ compilation : arch file, svn switch if needed...'
	944	echo '###############################################################'
	945	cd $MODEL/modipsl/modeles/LMD*
	946	LMDZPATH=`pwd`
[4210]	947	else
[4215]	948	echo "ERROR: No LMD* directory !!!"
	949	exit
[4210]	950	fi
	951
	952	###########################################################
	953	# For those who want to use fcm to compile via :
	954	# makelmdz_fcm -arch local .....
	955	############################################################
	956
	957
	958
	959	cd $MODEL/modipsl/modeles/LMDZ*
	960	lmdzlog=`pwd`/lmdz.log
	961
	962	##################################################################
	963	# Possibly update LMDZ if a specific svn release is requested
	964	##################################################################
	965
	966	set +e ; svn upgrade ; set -e
	967
	968	if [ "$svn" = "last" ] ; then svnopt="" ; else svnopt="-r $svn" ; fi
	969	if [ "$svn" != "" ] ; then
	970	set +e ; svn info \| grep -q 'http:'
	971	if [ $? = 0 ] ; then
[4218]	972	svn switch --relocate http://svn.lmd.jussieu.fr/LMDZ \
[4405]	973	https://svn.lmd.jussieu.fr/LMDZ
[4210]	974	fi
	975	svn update $svnopt
[4372]	976	set -e
[4210]	977	fi
	978
[4372]	979	#---------------------------------------------------------------------
[4218]	980	# Retrieve the final svn release number, and adjust compilation
	981	# options accordingly
[4372]	982	# If svn not available, will use the svn writen in $MODEL/Readm*md
	983	# For old version it assumes that it is before 4185 (the version
	984	# for which the test was introduced
	985	#---------------------------------------------------------------------
[4210]	986
[4372]	987	set +e ; mysvn=`svnversion . \| egrep -o "[0-9]+" 2>/dev/null` ; set -e
	988	if [ "$mysvn" = "" ] ; then mysvn=`grep 'Revision: [0-9]' $MODEL/Read*.md \| awk ' { print $2 } ' 2>/dev/null` ; fi
	989	if [ "$mysvn" = "" ] ; then mysvn=4190 ; fi
	990
[4427]	991	if [[ "$pclinux" = "1" && ! -f arch/arch-local.path ]] ; then
	992
	993	# create local 'arch' files (if on Linux PC):
	994	cd arch
	995	# arch-local.path file
	996	# test for version as arch.pth file changed format with rev 4426
	997	if [ "$mysvn" -gt 4425 ] ; then
	998	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib \"" > arch-local.path
	999	echo "NETCDF_LIB=\"-lnetcdff -lnetcdf\"" >> arch-local.path
	1000	echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
	1001	echo 'NETCDF95_INCDIR=-I$LMDGCM/../../include' >> arch-local.path
	1002	echo 'NETCDF95_LIBDIR=-L$LMDGCM/../../lib' >> arch-local.path
	1003	echo 'NETCDF95_LIB=-lnetcdf95' >> arch-local.path
	1004	echo 'IOIPSL_INCDIR=-I$LMDGCM/../../lib' >> arch-local.path
	1005	echo 'IOIPSL_LIBDIR=-L$LMDGCM/../../lib' >> arch-local.path
	1006	echo 'IOIPSL_LIB=-lioipsl' >> arch-local.path
	1007	echo 'XIOS_INCDIR=-I$LMDGCM/../XIOS/inc' >> arch-local.path
	1008	echo 'XIOS_LIBDIR=-L$LMDGCM/../XIOS/lib' >> arch-local.path
	1009	echo "XIOS_LIB=\"-lxios -lstdc++\"" >> arch-local.path
	1010	echo 'ORCH_INCDIR=-I$LMDGCM/../../lib' >> arch-local.path
	1011	echo 'ORCH_LIBDIR=-L$LMDGCM/../../lib' >> arch-local.path
	1012	else
	1013	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" \
	1014	> arch-local.path
	1015	echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
	1016	echo 'NETCDF95_INCDIR=$LMDGCM/../../include' >> arch-local.path
	1017	echo 'NETCDF95_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
	1018	echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path
	1019	echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
	1020	echo 'XIOS_INCDIR=$LMDGCM/../XIOS/inc' >> arch-local.path
	1021	echo 'XIOS_LIBDIR=$LMDGCM/../XIOS/lib' >> arch-local.path
	1022	echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path
	1023	echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
	1024	fi
	1025
	1026	if [ $pcmac == 1 ] ; then
	1027	BASE_LD="$BASE_LD -Wl,-rpath,${ncdfdir}/lib"
	1028	else
	1029	BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib"
	1030	fi
	1031	# Arch-local.fcm file (adapted from arch-linux-32bit.fcm)
	1032
	1033	if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi
	1034	sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \
	1035	-e s:"%LINK .*.$":"%LINK $compiler":1 \
	1036	-e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \
	1037	-e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \
	1038	-e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \
	1039	-e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \
	1040	-e s:"%FPP_DEF .*.$":"%FPP_DEF $FPP_DEF":1 \
	1041	-e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \
	1042	-e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \
	1043	arch-linux-32bit.fcm > arch-local.fcm
	1044
	1045	cd ..
	1046	### Adapt "bld.cfg" (add the shell):
	1047	#whereisthatshell=$(which ${use_shell})
	1048	#echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg
	1049
	1050	fi # of if [ "$pclinux" = 1 ]
[4372]	1051	#---------------------------------------------------------------------
[4210]	1052	# Option de compilation du rayonnement : depend de $mysvn ><= r4185
[4372]	1053	#---------------------------------------------------------------------
[4210]	1054	opt_rad=""
	1055
	1056	case $rad in
	1057	oldrad) iflag_rrtm=0 ; NSW=2 ; opt_rad="" ;;
[4218]	1058	rrtm) iflag_rrtm=1 ; NSW=6
[4405]	1059	if [ $mysvn -le 4185 ] ; then
	1060	opt_rad="-rrtm true"
	1061	else
	1062	opt_rad="-rad rrtm"
	1063	fi ;;
[4210]	1064	ecrad) iflag_rrtm=2 ; NSW=6 ; opt_rad="-rad ecrad" ;;
	1065	*) echo Only oldrad rrtm ecrad for rad option ; exit
	1066	esac
	1067
[4218]	1068	if [ $mysvn -le 4185 -a $rad = "ecrad" ] ; then
	1069	echo "ecrad only available for LMDZ rev starting with 4186 " ; exit
	1070	fi
[4210]	1071
	1072	##################################################################
	1073
[4213]	1074
	1075	if [[ ! -f libf/misc/netcdf95.F90 && ! -d $MODEL/NetCDF95-0.2 ]]
	1076	then
	1077	cd $MODEL
[4417]	1078	myget src_archives/netcdf/NetCDF95-0.2.tar.gz
[4213]	1079	tar -xf NetCDF95-0.2.tar.gz
	1080	rm NetCDF95-0.2.tar.gz
	1081	cd NetCDF95-0.2
	1082	mkdir build
	1083	cd build
	1084	cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=$ncdfdir \
[4405]	1085	-DCMAKE_INSTALL_PREFIX=$MODEL/modipsl
[4213]	1086	make install
	1087	cd $MODEL/modipsl/modeles/LMDZ*
	1088	fi
	1089
[4210]	1090	echo '##################################################################'
	1091	echo "Preparing script compile.sh for LMDZ compilation"
	1092	echo "It will only be run automatically if bench=1/tuto"
	1093	echo Here bench=$bench
	1094	echo '##################################################################'
	1095
[4218]	1096	if [ "$env_file" != "" ] ; then
	1097	mv arch/arch-${arch}.env arch/arch-${arch}.orig
	1098	\cp -f $env_file arch/arch-${arch}.env
	1099	fi
[4210]	1100
[4218]	1101	if [ $compile_with_fcm = 1 ] ; then
	1102	makelmdz="makelmdz_fcm $optim -arch $arch -j 8 "
	1103	else
	1104	makelmdz="makelmdz $optim -arch $arch"
	1105	fi
[4210]	1106
	1107	# sequential compilation
	1108	if [ "$sequential" = 1 ] ; then
[4215]	1109	echo Sequential compilation command, saved in compile.sh:
[4218]	1110	echo "./$makelmdz $optim $OPT_MAKELMDZ $optim $opt_rad $opt_cosp " \
[4405]	1111	"-d ${grid_resolution} -v $veget_version gcm "
[4218]	1112	echo "./$makelmdz $optim $OPT_MAKELMDZ $optim $opt_rad $opt_cosp " \
[4405]	1113	"-d ${grid_resolution} -v $veget_version gcm " > compile.sh
[4215]	1114	chmod +x ./compile.sh
	1115	if [ $bench = 1 ] ; then
[4405]	1116	echo install_lmdz.sh start_lmdz_seq_compilation `date`
	1117	echo log file: $lmdzlog
	1118	./compile.sh > $lmdzlog 2>&1
	1119	echo install_lmdz.sh end_lmdz_seq_compilation `date`
[4215]	1120	fi
[4210]	1121	fi # fin sequential
	1122
	1123	# compiling in parallel mode
	1124	if [ $parallel != "none" ] ; then
	1125	echo '##########################################################'
[4215]	1126	echo ' Parallel compile '
[4210]	1127	echo '##########################################################'
[4215]	1128	echo "(after saving the sequential libs and binaries)"
	1129	cd $MODEL/modipsl
	1130	tar cf sequential.tar bin/ lib/
	1131	\rm -rf bin/ lib/
	1132	tar xf ioipsl.tar
	1133	#
	1134	# Orchidee
	1135	#
	1136	cd $ORCHPATH
	1137	if [ -d src_parallel -a $veget != 'NONE' ] ; then
[4405]	1138	cd arch
	1139	sed \
	1140	-e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \
	1141	-e s:"%LINK.*.$":"%LINK $par_comp":1 \
	1142	-e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \
	1143	-e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \
	1144	-e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \
	1145	-e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \
	1146	arch-local.fcm > tmp.fcm
[4210]	1147
[4405]	1148	mv tmp.fcm arch-local.fcm
	1149	cd ../
	1150	echo Compiling ORCHIDEE in parallel mode `date`
	1151	echo logfile $orchideelog
	1152	echo "NOTE : to recompile it when necessary, use ./compile_orc.sh " \
	1153	"in modipsl/modeles/ORCHIDEE"
	1154	echo ./makeorchidee_fcm -j 8 -clean $xios_orchid $opt_orc \
	1155	-parallel $parallel -arch $arch > compile_orc.sh
	1156	echo ./makeorchidee_fcm -j 8 $xios_orchid $opt_orc \
	1157	-parallel $parallel -arch $arch >> compile_orc.sh
	1158	echo echo Now you must also recompile LMDZ, by running ./compile.sh \
	1159	in modeles/LMDZ >> compile_orc.sh
	1160	chmod u+x compile_orc.sh
	1161	./makeorchidee_fcm -j 8 -clean $xios_orchid $opt_orc \
	1162	-parallel $parallel -arch $arch > $orchideelog 2>&1
	1163	./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel $parallel \
	1164	-arch $arch >> $orchideelog 2>&1
	1165	echo End of ORCHIDEE compilation in parallel mode `date`
[4215]	1166	elif [ $veget != 'NONE' ] ; then
[4405]	1167	echo '##########################################################'
	1168	echo ' Orchidee version too old '
	1169	echo ' Please update to new version '
	1170	echo '##########################################################'
	1171	exit
[4215]	1172	fi # of [ -d src_parallel -a $veget != 'NONE' ]
[4210]	1173
[4215]	1174	# LMDZ
	1175	cd $LMDZPATH
	1176	if [ $arch = local ] ; then
[4405]	1177	cd arch
	1178	sed -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \
	1179	-e s:"%LINK.*.$":"%LINK $par_comp":1 \
	1180	-e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \
	1181	-e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \
	1182	-e s:"%ARFLAGS.*.$":"%ARFLAGS $ARFLAGS":1 \
	1183	-e s@"%BASE_LD.*.$"@"%BASE_LD -Wl,-rpath=${root_mpi}/lib:${ncdfdir}/lib"@1 \
	1184	-e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \
	1185	-e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \
	1186	arch-local.fcm > tmp.fcm
	1187	mv tmp.fcm arch-local.fcm
	1188	cd ../
[4215]	1189	fi
	1190	rm -f compile.sh
	1191	echo resol=${grid_resolution} >> compile.sh
	1192	if [ ${hostname:0:5} = jean- -a "$cosp" = "v2" ] ; then
[4210]	1193
[4405]	1194	echo LMDZ compilation command in parallel mode, saved in compile.sh, \
	1195	is :
	1196	echo "(ATTENTION le probleme de cospv2 sur jean-zay en mode prod " \
	1197	"n est pas corrige ! )"
	1198	# ATTENTION le probleme de cospv2 sur jean-zay en mode prod n
	1199	# est pas corrige
	1200	echo ./$makelmdz -dev $optim $OPT_MAKELMDZ $opt_rad $opt_cosp \
	1201	$opt_makelmdz_xios -d \$resol -v $veget_version -mem \
	1202	-parallel $parallel gcm >> compile.sh
	1203	echo ./$makelmdz -dev $optim $OPT_MAKELMDZ $opt_rad $opt_cosp \
	1204	$opt_makelmdz_xios -d \$resol -v $veget_version -mem \
	1205	-parallel $parallel gcm
[4215]	1206	else
[4405]	1207	echo ./$makelmdz $optim $OPT_MAKELMDZ $opt_rad $opt_cosp \
	1208	$opt_makelmdz_xios -d \$resol -v $veget_version -mem \
	1209	-parallel $parallel gcm >> compile.sh
	1210	echo ./$makelmdz $optim $OPT_MAKELMDZ $opt_rad $opt_cosp \
	1211	$opt_makelmdz_xios -d \$resol -v $veget_version -mem \
	1212	-parallel $parallel gcm
[4215]	1213	fi
	1214	chmod +x ./compile.sh
[4210]	1215
[4215]	1216	if [ $bench = 1 ] ; then
[4405]	1217	echo Compiling LMDZ in parallel mode `date`, LMDZ log file: $lmdzlog
	1218	./compile.sh > $lmdzlog 2>&1
[4215]	1219	fi
	1220
[4210]	1221	fi # of if [ $parallel != "none" ]
	1222
	1223
	1224	##################################################################
	1225	# Verification du succes de la compilation
	1226	##################################################################
	1227
	1228	# Recherche de l'executable dont le nom a change au fil du temps ...
	1229	# suffix contains radiative option starting with revision 4186
	1230	if [ $mysvn -ge 4186 ] ; then suff_exe=_${rad}${suff_exe} ; fi
	1231	gcm=""
[4219]	1232
[4218]	1233	for exe in gcm.e bin/gcm_${grid_resolution}_phylmd${suff_exe}${suff_orc}.e
	1234	do
	1235	if [ -f $exe ] ; then gcm=$exe ; fi
[4210]	1236	done
	1237
	1238	if [ "$gcm" = "" ] ; then
[4215]	1239	if [ $bench = 1 ] ; then
[4405]	1240	echo 'Compilation failed !! Cannot run the benchmark;'
	1241	exit
[4215]	1242	else
[4405]	1243	echo 'Compilation not done (only done when bench=1)'
[4215]	1244	fi
[4210]	1245	else
[4215]	1246	echo '##########################################################'
	1247	echo 'Compilation successfull !! ' `date`
	1248	echo '##########################################################'
	1249	echo The executable is $gcm
[4210]	1250	fi
	1251
	1252	##################################################################
	1253	# Below, we run a benchmark if bench=1 or tuto
	1254	##################################################################
	1255
	1256	if [ $bench = tuto ] ; then
[4286]	1257	myget Training/tutorial.tar ; tar xf tutorial.tar ; cd TUTORIAL
[4218]	1258	./init.sh
[4210]	1259
	1260	elif [[ $bench = 1 && ! -d BENCH${grid_resolution} ]] ; then
[4215]	1261	# TOUTE CETTE SECTION DEVRAIT DISPARAITRE POUR UNE COMMANDE
	1262	# OU DES BENCHS PAR MOTS CLES COMME tuto
[4210]	1263
[4215]	1264	echo '##########################################################'
	1265	echo ' Running a test run '
	1266	echo '##########################################################'
[4210]	1267
[4215]	1268	\rm -rf BENCH${grid_resolution}
	1269	bench=bench_lmdz_${grid_resolution}
	1270	echo install_lmdz.sh before bench download `date`
	1271	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$bench.tar.gz
	1272	myget 3DBenchs/$bench.tar.gz
	1273	echo install_lmdz.sh after bench download `date`
[4286]	1274	tar xf $bench.tar.gz
[4210]	1275
[4215]	1276	if [ "$cosp" = "v1" -o "$cosp" = "v2" ] ; then
[4405]	1277	cd BENCH${grid_resolution}
	1278	# copier les fichiers namelist input et output our COSP
	1279	cp ../DefLists/cosp*_input_nl.txt .
	1280	cp ../DefLists/cosp*_output_nl.txt .
	1281	# Activer la cles ok_cosp pour tourner avec COSP
	1282	sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp
	1283	\mv -f tmp config.def
	1284	cd ..
[4215]	1285	fi
[4210]	1286
[4215]	1287	if [ -n "$physiq" ]; then
[4405]	1288	cd BENCH${grid_resolution}
	1289	if [ -f physiq.def_${physiq} ]; then
	1290	cp physiq.def_${physiq} physiq.def
	1291	echo using physiq.def_${physiq}
	1292	else
	1293	echo using standard physiq.def
	1294	fi
	1295	cd ..
[4215]	1296	else
[4405]	1297	echo using standard physiq.def
[4215]	1298	fi
[4210]	1299
[4215]	1300	if [ "$with_xios" = "y" ] ; then
[4405]	1301	cd BENCH${grid_resolution}
	1302	cp ../DefLists/iodef.xml .
	1303	cp ../DefLists/context_lmdz.xml .
	1304	cp ../DefLists/field_def_lmdz.xml .
	1305	# A raffiner par la suite
	1306	echo A FAIRE : Copier les *xml en fonction de l option cosp
	1307	cp ../DefLists/field_def_cosp*.xml .
	1308	cp ../DefLists/file_def_hist*xml .
	1309	# adapt iodef.xml to use attached mode
	1310	sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' \
	1311	iodef.xml > tmp
	1312	\mv -f tmp iodef.xml
[4210]	1313
[4405]	1314	# and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE.
	1315	# except for histday
	1316	for histfile in file_def_hist*xml
	1317	do
	1318	if [ "$histfile" = "file_def_histday_lmdz.xml" ] ; then
	1319	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' \
	1320	$histfile > tmp
	1321	\mv -f tmp $histfile
	1322	sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile \
	1323	> tmp
	1324	\mv -f tmp $histfile
	1325	sed -e 's@compression_level="2"@compression_level="0"@' \
	1326	$histfile > tmp
	1327	\mv -f tmp $histfile
	1328	else
	1329	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
	1330	$histfile > tmp
	1331	\mv -f tmp $histfile
	1332	fi
	1333	done
	1334	# and add option "ok_all_xml=y" in config.def
	1335	echo "### XIOS outputs" >> config.def
	1336	echo 'ok_all_xml=.true.' >> config.def
[4210]	1337
[4405]	1338	#activer les sorties pour Cosp
	1339	if [ "$cosp" = "v1" ] ; then
	1340	histfile=file_def_histdayCOSP_lmdz.xml
	1341	sed -e 's@enabled=".FALSE."@enabled=".TRUE."@' $histfile > tmp
	1342	\mv -f tmp $histfile
	1343	sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile > tmp
	1344	\mv -f tmp $histfile
	1345	sed -e 's@compression_level="2"@compression_level="0"@' \
	1346	$histfile > tmp
	1347	\mv -f tmp $histfile
	1348	fi
	1349	if [ "$cosp" = "v2" ] ; then
	1350	histfile=file_def_histdayCOSPv2_lmdz.xml
	1351	sed -e 's@compression_level="2"@compression_level="0"@' \
	1352	$histfile > tmp
	1353	\mv -f tmp $histfile
	1354	contextfile=context_lmdz.xml
	1355	sed -e 's@src="./file_def_histdayCOSP_lmdz.xml"@src="./file_def_histdayCOSPv2_lmdz.xml"@' \
	1356	$contextfile > tmp
	1357	\mv -f tmp $contextfile
	1358	sed -e 's@src="./file_def_histmthCOSP_lmdz.xml"@src="./file_def_histmthCOSPv2_lmdz.xml"@' \
	1359	$contextfile > tmp
	1360	\mv -f tmp $contextfile
	1361	sed -e 's@src="./file_def_histhfCOSP_lmdz.xml"@src="./file_def_histhfCOSPv2_lmdz.xml"@' \
	1362	$contextfile > tmp
	1363	\mv -f tmp $contextfile
	1364	fieldfile=field_def_lmdz.xml
	1365	sed -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' $fieldfile \
	1366	> tmp
	1367	\mv -f tmp $fieldfile
	1368	fi
[4210]	1369
[4405]	1370	cd ..
[4215]	1371	fi
[4210]	1372
[4215]	1373	# Cas Bensh avec ecrad
	1374	if [ "$rad" = "ecrad" ] ; then
[4405]	1375	cd BENCH${grid_resolution}
	1376	cp ../DefLists/namelist_ecrad .
	1377	cp -r ../libf/phylmd/ecrad/data .
	1378	cd ..
[4215]	1379	fi
[4210]	1380
[4215]	1381	# Adjusting bench physiq.def to radiative code chosen
	1382	cd BENCH${grid_resolution}
[4218]	1383	sed -e 's/iflag_rrtm=.*.$/iflag_rrtm='$iflag_rrtm'/' \
[4405]	1384	-e 's/NSW=.*.$/NSW='$NSW'/' physiq.def > tmpdef
[4215]	1385	\mv tmpdef physiq.def
	1386	cd ..
[4210]	1387
[4215]	1388	cp $gcm BENCH${grid_resolution}/gcm.e
[4210]	1389
[4215]	1390	cd BENCH${grid_resolution}
	1391	# On cree le fichier bench.sh au besoin
	1392	# Dans le cas 48x36x39 le bench.sh existe deja en parallele
[4210]	1393
[4215]	1394	if [ "$grid_resolution" = "48x36x39" ] ; then
[4405]	1395	echo On ne touche pas au bench.sh
	1396	# But we have to adapt "run_local.sh" for $mpirun
	1397	sed -e "s@mpirun@$mpirun@g" run_local.sh > tmp
	1398	mv -f tmp run_local.sh
	1399	chmod u=rwx run_local.sh
[4215]	1400	elif [ "${parallel:0:3}" = "mpi" ] ; then
[4405]	1401	# Lancement avec deux procs mpi et 2 openMP
	1402	echo "export OMP_STACKSIZE=800M" > bench.sh
	1403	if [ "${parallel:4:3}" = "omp" ] ; then
[4215]	1404	echo "export OMP_NUM_THREADS=2" >> bench.sh
[4405]	1405	fi
	1406	if [ "$cosp" = "v1" -o "$cosp" = "v2" ] ; then
[4215]	1407	if [ ${hostname:0:5} = jean- ] ; then
[4405]	1408	chmod +x ../arch.env
	1409	../arch.env
	1410	echo "ulimit -s 2000000" >> bench.sh
[4215]	1411	else
[4405]	1412	echo "ulimit -s 200000" >> bench.sh
	1413	fi
	1414	else
[4215]	1415	echo "ulimit -s unlimited" >> bench.sh
[4405]	1416	fi
	1417	if [ ${hostname:0:5} = jean- ] ; then
[4215]	1418	. ../arch/arch-${arch}.env
[4218]	1419	echo "srun -n 2 -A $idris_acct@cpu gcm.e > listing 2>&1" \
[4405]	1420	>> bench.sh
	1421	else
[4215]	1422	echo "$mpirun -np 2 gcm.e > listing 2>&1" >> bench.sh
[4405]	1423	fi
	1424	# Add rebuild, using reb.sh if it is there
	1425	echo 'if [ -f reb.sh ] ; then' >> bench.sh
	1426	echo ' ./reb.sh histday ; ./reb.sh histmth ; ./reb.sh histhf ; ' \
	1427	'./reb.sh histins ; ./reb.sh stomate_history ; ' \
	1428	'./reb.sh sechiba_history ; ./reb.sh sechiba_out_2 ' >> bench.sh
	1429	echo 'fi' >> bench.sh
[4215]	1430	else
[4405]	1431	echo "./gcm.e > listing 2>&1" > bench.sh
[4215]	1432	fi
	1433	# Getting orchidee stuff
	1434	if [ $veget == 'CMIP6' ] ; then
[4405]	1435	#echo 'myget 3DBenchs/BENCHorch11.tar.gz'
	1436	#myget 3DBenchs/BENCHorch11.tar.gz
	1437	#tar xvzf BENCHorch11.tar.gz
	1438	echo 'myget 3DBenchs/BENCHCMIP6.tar.gz'
	1439	myget 3DBenchs/BENCHCMIP6.tar.gz
	1440	tar xvzf BENCHCMIP6.tar.gz
	1441	sed -e "s:VEGET=n:VEGET=y:" config.def > tmp
	1442	mv -f tmp config.def
	1443	if [ "$with_xios" = "y" ] ; then
[4215]	1444	cp ../../ORCHIDEE/src_xml/context_orchidee.xml .
[4218]	1445	echo '<context id="orchidee" src="./context_orchidee.xml"/>' \
[4405]	1446	> add.tmp
[4215]	1447	cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml .
	1448	cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml .
	1449	cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml .
	1450	if [ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ] ; then
[4405]	1451	cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml .
	1452	echo '<context id="orchidee" ' \
	1453	'src="./context_input_orchidee.xml"/>' >> add.tmp
[4215]	1454	fi
	1455	sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp
	1456	mv tmp iodef.xml
[4218]	1457	sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' \
[4405]	1458	file_def_orchidee.xml > tmp
	1459	\mv -f tmp file_def_orchidee.xml
[4218]	1460	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
[4405]	1461	file_def_orchidee.xml > tmp
	1462	\mv -f tmp file_def_orchidee.xml
[4218]	1463	sed -e 's@output_level="_AUTO_"@output_level="1"@' \
[4405]	1464	file_def_orchidee.xml > tmp
	1465	\mv -f tmp file_def_orchidee.xml
[4218]	1466	sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' \
[4405]	1467	file_def_orchidee.xml > tmp
	1468	\mv -f tmp file_def_orchidee.xml
[4218]	1469	sed -e 's@compression_level="4"@compression_level="0"@' \
[4405]	1470	file_def_orchidee.xml > tmp
	1471	\mv -f tmp file_def_orchidee.xml
[4218]	1472	sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' \
[4405]	1473	orchidee.def > tmp
	1474	\mv -f tmp orchidee.def
	1475	fi
[4215]	1476	fi
[4220]	1477
	1478	if [[ -f ../arch.env ]]
	1479	then
[4405]	1480	source ../arch.env
[4220]	1481	fi
	1482
[4215]	1483	echo EXECUTION DU BENCH
	1484	set +e
	1485	date ; ./bench.sh > out.bench 2>&1 ; date
	1486	set -e
	1487	tail listing
[4210]	1488
	1489
[4215]	1490	echo '##########################################################'
	1491	echo 'Simulation finished in' `pwd`
	1492	echo 'You have compiled with:'
	1493	cat ../compile.sh
	1494	if [ $parallel = "none" ] ; then
[4405]	1495	echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e'
	1496	echo 'or ./bench.sh'
[4215]	1497	else
[4405]	1498	echo 'You may re-run it with : '
	1499	echo 'cd ' `pwd` '; ./bench.sh'
	1500	# echo 'ulimit -s unlimited'
	1501	# echo 'export OMP_NUM_THREADS=2'
	1502	# echo 'export OMP_STACKSIZE=800M'
	1503	# echo "$mpirun -np 2 gcm.e "
[4215]	1504	fi
	1505	echo '##########################################################'
[4210]	1506
	1507	fi # bench
	1508
	1509
	1510	#################################################################
	1511	# Installation eventuelle du 1D
	1512	#################################################################
	1513
	1514	if [ $SCM = 1 ] ; then
[4215]	1515	cd $MODEL
	1516	myget 1D/1D.tar.gz
[4286]	1517	tar xf 1D.tar.gz
[4215]	1518	cd 1D
[4422]	1519	if [ $rad = oldrad ] ; then
	1520	sed -i'' -e 's/^rad=.*$/rad=oldrad/' run.sh
	1521	sed -i'' -e 's/^rad=.*$/rad=oldrad/' bin/compile
	1522	fi
[4409]	1523	echo Running 1D/run.sh, log in `pwd`/run1d.log
	1524	./run.sh > `pwd`/run1d.log 2>&1 &
[4210]	1525	fi
	1526
[4409]	1527
[4210]	1528	#################################################################
	1529	# sauvegarde des options veget pour utilisation eventuelle tutorial_prod
	1530	#################################################################
	1531	cd $MODEL/modipsl/modeles
	1532	#echo surface_env file created in $MODEL
	1533	echo 'veget='$veget > surface_env
	1534	#opt_veget="-v $veget_version"
	1535	#echo 'opt_veget="'$opt_veget\" >> surface_env
	1536	echo 'opt_veget="'-v $veget_version\" >> surface_env
	1537	echo 'orchidee_rev='$orchidee_rev >> surface_env
	1538	echo 'suforch='$suff_orc >> surface_env

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