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source: BOL/script_install/install_lmdz.sh @ 4291

Last change on this file since 4291 was 4286, checked in by lguez, 2 years ago

Remove verbose option of tar

This printed thousands of not very interesting lines. The option on
one of the tar commands was already removed in revision 4205 and
unvoluntarily put back in revision 4267.

Property svn:executable set to *

File size: 50.5 KB

Rev	Line
[4210]	1	#!/bin/bash
	2
	3	#set -vx
	4
	5	###########################################################################
	6	# Author : Laurent Fairhead et Frédéric Hourdin
	7	# Usage : install_lmdz.sh -help
	8	#
	9	# bash installation script of the LMDZ model on different computer types :
	10	# Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS)
	11	#
	12	# The model is downloaded in the following directory tree
	13	# $MODEL/modipsl/modeles/...
	14	# using the "modipsl" infrastructure created by the "IPSL"
	15	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
	16	# activities.
	17	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
	18	# components.
	19	#
	20	# The sources of the models can be found in the "modeles" directory.
[4218]	21	# In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of
	22	# input-outputs using the NetCDF library).
[4210]	23	#
	24	# The script downloads various source files (including a version of NetCDF)
	25	# and utilities, compiles the model, and runs a test simulation in a
	26	# minimal configuration.
	27	#
	28	# Prerequisites : pgf90/gfortran, bash or ksh, wget , gunzip, tar, ...
	29	#
	30	# Modif 18/11/2011
	31	# changes for option real 8.
	32	# We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
	33	# but with -r4 for netcdf. Variable real must be set to
	34	# r4 or r8 at the beginning of the script below.
	35	#
	36	###########################################################################
	37
	38	echo install_lmdz.sh DEBUT `date`
	39	set -e
	40
	41	################################################################
	42	# Choice of installation options
	43	################################################################
	44
	45	################################################################
	46	# A function to fetch files either locally or on the internet
	47	################################################################
	48	function myget { #1st and only argument should be file name
[4215]	49	# Path on local computer where to look for the datafile
	50	if [ -f /u/lmdz/WWW/LMDZ/pub/$1 ] ; then
	51	\cp -f -p /u/lmdz/WWW/LMDZ/pub/$1 .
	52	elif [ -f ~/LMDZ/pub/$1 ] ; then
	53	\cp -f -p ~/LMDZ/pub/$1 .
	54	else
	55	wget --no-check-certificate -nv http://lmdz.lmd.jussieu.fr/pub/$1
	56	save_pub_locally=0
	57	if [ $save_pub_locally = 1 ] ; then # saving wget files on ~/LMDZ/pub
[4218]	58	dir=~/LMDZ/pub/`dirname $1` ; mkdir -p $dir
	59	cp -r `basename $1` $dir
[4215]	60	fi
[4210]	61	fi
	62	}
	63
	64	# 04_2021 : tester si r4 marche encore !
	65	#real=r4
	66	real=r8
	67
	68
	69	#########################################################################
	70	# Valeur par défaut des parametres
	71	#########################################################################
	72	svn=""
	73	#version=trunk
	74	version=20220131.trunk
	75
	76	getlmdzor=1
[4237]	77	netcdf=1 # 1: for automatic installation;
[4267]	78	# or 0: do not install NetCDF and look for it in standard locations;
	79	# or absolute path: look for NetCDF there
[4210]	80	check_linux=1
	81	ioipsl=1
	82	bench=1
	83	pclinux=1
	84	pcmac=0 # default: not on a Mac
	85	compiler=gfortran
[4269]	86	if [ `gfortran -dumpversion \| cut -d. -f1` -ge 11 ] ; then allow_arg_mismatch="-fallow-argument-mismatch" ; fi
[4210]	87	SCM=0
	88	# surface/vegetation scheme treatment
	89	# controlled by the single variable veget which can have the following values
	90	# - NONE: bucket scheme (default)
	91	# - CMIP6: orchidee version used in CMIP exercise, rev 5661
	92	# - number: orchidee version number
	93	veget=NONE
	94	# choose the resolution for the bench runs
	95	# grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE)
	96	# 96x71x19 standard configuration
	97	grid_resolution=144x142x79
	98	grid_resolution=96x95x39
	99	grid_resolution=48x36x19
	100	grid_resolution=32x32x39
	101	# choose the physiq version you want to test
	102	#physiq=NPv6.0.14splith
	103	physiq=
	104
	105	## parallel can take the values none/mpi/omp/mpi_omp
	106	parallel=mpi_omp
	107	parallel=none
	108	idris_acct=lmd
	109	OPT_GPROF=""
	110	OPT_MAKELMDZ=""
	111	MODEL=""
	112
	113	## also compile XIOS? (and more recent NetCDF/HDF5 libraries) Default=no
	114	with_xios="n"
	115	opt_makelmdz_xios=""
	116
	117	## compile with oldrad/rrtm/ecrad radiatif code (Default=rrtm)
	118	rad=rrtm
	119
	120	## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0)
	121	compile_with_fcm=1
	122
	123	#Compilation with Cosp (cosp=NONE/v1/v2 ; default=NONE)
	124	cosp=NONE
	125	opt_cosp=""
	126
	127	# Check if on a Mac
	128	if [ `uname` = "Darwin" ]
	129	then
	130	pcmac=1
	131	export MAKE=make
	132	fi
	133	#echo "pcmac="$pcmac
	134
	135	env_file=""
	136
	137	#########################################################################
	138	# Options interactives
	139	#########################################################################
	140	while (($# > 0))
[4215]	141	do
	142	case $1 in
	143	"-h") cat <<........fin
[4210]	144	$0 [ -v version ] [ -r svn_release ]
	145	[ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ]
	146	[-name LOCAL_MODEL_NAME] [-gprof] [-opt_makelmdz] [-rad RADIATIF]
	147
	148	-v "version" like 20150828.trunk
	149	see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk
	150
	151	-r "svn_release" : either the svn release number or "last"
	152
	153	-compiler gfortran\|ifort\|pgf90 (default: gfortran)
	154
	155	-parallel PARA : can be mpi_omp (mpi with openMP) or none (for sequential)
	156
	157	-d GRID_RESOLUTION should be among the available benchs if -bench 1
	158	among which : 48x36x19, 48x36x39
	159	if wanting to run a bench simulation in addition to compilation
	160	default : 48x36x19
	161
	162	-bench activating the bench or not (0/1). Default 1
	163
	164	-name LOCAL_MODEL_NAME : default = LMDZversion.release
	165
[4211]	166	-netcdf 0, 1 or PATH
	167	0: do not download NetCDF, look for it in standard locations
	168	1: download and compile NetCDF
	169	PATH: full path to an existing installed NetCDF library
[4210]	170
	171	-xios also download and compile the XIOS library
	172	(requires the NetCDF4-HDF5 library, also installed by default)
	173	(requires to also have -parallel mpi_omp)
	174
	175	-gprof to compile with -pg to enable profiling with gprof
	176
	177	-cosp to run without our with cospv1 or cospv2 [none/v1/v2]
	178
	179	-rad RADIATIF can be oldrad, rrtm or ecrad radiatif code
	180
	181	-nofcm to compile without fcm
	182
	183	-SCM install 1D version automatically
	184
	185	-debug compile everything in debug mode
	186
	187	-opt_makelmdz to call makelmdz or makelmdz_fcm with additional options
	188
	189	-physiq to choose which physics package to use
	190
	191	-env_file specify an arch.env file to overwrite the existing one
	192
	193	-veget surface model to run [NONE/CMIP6/xxxx]
	194
	195	........fin
[4215]	196	exit ;;
	197	"-v") version=$2 ; shift ; shift ;;
	198	"-r") svn=$2 ; shift ; shift ;;
	199	"-compiler") compiler=$2
	200	case $compiler in
[4218]	201	"gfortran"\|"ifort"\|"pgf90") compiler=$2 ; shift
	202	shift ;;
	203	*) echo "Only gfortran , ifort or pgf90 for the " \
	204	"compiler option"
	205	exit
[4215]	206	esac ;;
	207	"-d") grid_resolution=$2 ; shift ; shift ;;
	208	"-gprof") OPT_GPROF="-pg" ; shift ;;
	209	"-cosp") cosp=$2
	210	case $cosp in
	211	"none"\|"v1"\|"v2") cosp=$2 ; shift ; shift ;;
	212	*) echo Only none v1 v2 for cosp option ; exit
	213	esac ;;
	214	"-nofcm") compile_with_fcm=0 ; shift ;;
	215	"-SCM") SCM=1 ; shift ;;
	216	"-opt_makelmdz") OPT_MAKELMDZ="$2" ; shift ; shift ;;
[4218]	217	"-rrtm") rrtm="$2"
	218	if [ "$2" = "false" ] ; then
	219	rad="oldrad"
	220	else
	221	rad="rrtm"
	222	fi
	223	shift ; shift ;;
[4215]	224	"-rad") rad=$2
	225	case $rad in
	226	"oldrad"\|"rrtm"\|"ecrad") rad=$2 ; shift ; shift ;;
	227	*) echo Only oldrad rrtm ecrad for rad option ; exit
	228	esac ;;
	229	"-parallel") parallel=$2
	230	case $parallel in
[4218]	231	"none"\|"mpi"\|"omp"\|"mpi_omp") parallel=$2 ; shift
	232	shift ;;
	233	*) echo Only none mpi omp mpi_omp for the parallel \
	234	option
	235	exit
[4215]	236	esac ;;
	237	"-bench") bench=$2 ; shift ; shift ;;
	238	"-debug") optim=-debug ; shift ;;
	239	"-name") MODEL=$2 ; shift ; shift ;;
	240	"-netcdf") netcdf=$2 ; shift ; shift ;;
	241	"-physiq") physiq=$2 ; shift ; shift ;;
	242	"-xios") with_xios="y" ; shift ;;
	243	"-env_file") env_file=$2 ; shift ; shift ;;
	244	"-veget") veget=$2 ; shift ; shift ;;
	245	*) ./install_lmdz.sh -h ; exit
	246	esac
[4210]	247	done
	248
[4218]	249	# Option de compilation du rayonnement : depend de $mysvn ><= r4185,
	250	# sera donc definie plus bas
	251
[4210]	252	#opt_rad=""
	253	#case $rad in
	254	# rrtm) opt_rad="-rad rrtm" ;;
	255	# ecrad) opt_rad="-rad ecrad" ;;
	256	#esac
	257
	258
	259	# Option de compilation pour Cosp
	260	opt_cosp=""
	261	case cosp in
[4215]	262	v1) opt_cosp="-cosp true" ;;
	263	v2) opt_cosp="-cospv2 true" ;;
[4210]	264	esac
	265
	266	# Check on veget version
	267	#if [ "$veget" != 'NONE' -a "$veget" != "CMIP6" -a "$veget" != +([0-9]) ] ; then
	268	if [ $veget != 'NONE' -a $veget != "CMIP6" ] ; then
	269	re='^[0-9]+$'
	270	if ! [[ $veget =~ $re ]] ; then
	271	echo 'Valeur de l option veget non valable'
	272	exit
	273	fi
	274	fi
	275
	276	#Define veget-related suffix for gcm name
	277	if [ "$veget" = 'NONE' ] ; then
	278	suff_orc=''
[4218]	279	#For use with tutorial, orchidee_rev is also defined (will be
	280	#written in surface_env at the end of the script)
[4210]	281	orchidee_rev=''
	282	else
	283	suff_orc='_orch'
	284	fi
	285
	286
[4218]	287	if [ $parallel = none ] ; then
	288	sequential=1; suff_exe='_seq'
	289	else
	290	sequential=0; suff_exe='_para_mem'
	291	fi
[4210]	292
	293	#Chemin pour placer le modele
	294	if [ "$MODEL" = "" ] ; then MODEL=./LMDZ$version$svn$optim ; fi
	295
	296
	297	arch=local
	298
	299
	300	if [ $compiler = g95 ] ; then echo g95 is not supported anymore ; exit ; fi
	301
	302	################################################################
	303	# Specificite des machines
	304	################################################################
	305
	306	hostname=`hostname`
	307	if [ "$pclinux" = 1 ] ; then o_ins_make="-t g95" ; else o_ins_make="" ; fi
	308
	309	case ${hostname:0:5} in
	310
[4215]	311	jean-) compiler="mpiifort" ;
	312	par_comp="mpiifort" ;
	313	o_ins_make="-t jeanzay" ;
	314	make=gmake ;
	315	module purge
	316	module load intel-compilers/19.0.4 ;
	317	#module load intel-mpi/19.0.4 ;
	318	#module load intel-mkl/19.0.4 ;
	319	module load hdf5/1.10.5-mpi ;
	320	module load netcdf/4.7.2-mpi ;
	321	module load netcdf-fortran/4.5.2-mpi ;
	322	module load subversion/1.9.7 ;
	323	export NETCDF_LIBDIR=./
	324	export NETCDFFORTRAN_INCDIR=./
	325	export NETCDFFORTRAN_LIBDIR=./
	326	arch=X64_JEANZAY ;;
[4210]	327
[4215]	328	cicla\|camel) compiler="gfortran" ;
[4223]	329	module purge
	330	module load gnu/10.2.0
	331	module load openmpi/4.0.5
	332	module load hdf5/1.10.7-mpi
	333	module load netcdf-c/4.7.4-mpi
	334	module load netcdf-fortran/4.5.3-mpi
	335	netcdf=/net/nfs/tools/PrgEnv/linux-scientific6-x86_64/gcc-10.2.0/netcdf-fortran-4.5.3-k3drgfqok3lip62hnm3tsyof4cjen5sk
[4222]	336	module load svn/1.14.0
[4211]	337
[4215]	338	if [ $parallel != none ] ; then
[4223]	339	root_mpi=/net/nfs/tools/meso-sl6/openmpi/4.0.5-gcc-10.2.0
[4215]	340	path_mpi=$root_mpi/bin ;
	341	par_comp=${path_mpi}/mpif90 ;
	342	mpirun=${path_mpi}/mpirun ;
	343	fi ;
	344	arch=local ;
	345	make=make ;
	346	o_ins_make="-t g95" ;;
[4210]	347
[4215]	348	*) if [ $parallel = none -o -f /usr/bin/mpif90 ] ; then
	349	path_mpi=`which mpif90 \| sed -e s:/mpif90::` ;
	350	if [ -d /usr/lib64/openmpi ] ; then
	351	root_mpi="/usr/lib64/openmpi"
	352	else
	353	root_mpi="/usr"
	354	fi
	355	else
	356	echo "Cannot find mpif90" ;
	357	if [ $parallel = none ] ; then exit ; fi ;
	358	fi ;
	359	if [ $parallel != none ] ; then
	360	root_mpi=$(which mpif90 \| sed -e s:/bin/mpif90::)
	361	path_mpi=$(which mpif90 \| sed -e s:/mpif90::)
	362	export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH
	363	fi
	364	par_comp=${path_mpi}/mpif90 ;
	365	mpirun=${path_mpi}/mpirun ;
	366	arch=local ;
	367	make=make ;
	368	o_ins_make="-t g95"
[4210]	369	esac
	370
	371	# Flags for parallelism:
	372	if [ $parallel != none ] ; then
[4215]	373	# MPI_LD are the flags needed for linking with MPI
	374	MPI_LD="-L${root_mpi}/lib -lmpi"
	375	if [ "$compiler" = "gfortran" ] ; then
	376	# MPI_FLAGS are the flags needed for compilation with MPI
	377	MPI_FLAGS="-fcray-pointer"
	378	# OMP_FLAGS are the flags needed for compilation with OpenMP
	379	OMP_FLAGS="-fopenmp -fcray-pointer"
	380	# OMP_LD are the flags needed for linking with OpenMP
	381	OMP_LD="-fopenmp"
	382	elif [ "$compiler" = "ifort" ] ; then
	383	MPI_FLAGS=""
	384	OMP_FLAGS="-openmp"
	385	OMP_LD="-openmp"
	386	else # pgf90
	387	MPI_FLAGS=""
	388	OMP_FLAGS="-mp"
	389	OMP_LD="-mp"
	390	fi
[4210]	391	fi
	392
	393	#####################################################################
	394	# Test for old gfortran compilers
	395	# If the compiler is too old (older than 4.3.x) we test if the
	396	# temporary gfortran44 patch is available on the computer in which
	397	# case the compiler is changed from gfortran to gfortran44
	398	# Must be aware than parallelism can not be activated in this case
	399	#####################################################################
	400
	401	if [ "$compiler" = "gfortran" ] ; then
[4215]	402	gfortran=gfortran
	403	gfortranv=`gfortran --version \| \
[4210]	404	head -1 \| awk ' { print $NF } ' \| awk -F. ' { print $1 * 10 + $2 } '`
[4215]	405	if [ $gfortranv -le 43 ] ; then
	406	echo ERROR : Your gfortran compiler is too old
	407	echo 'Please choose a new one (ifort) and change the line'
	408	echo compiler=xxx
	409	echo in the install_lmdz.sh script and rerun it
	410	if [ `which gfortran44 \| wc -w` -ne 0 ] ; then
	411	gfortran=gfortran44
	412	else
	413	echo gfotran trop vieux ; exit
	414	fi
	415	fi
	416	compiler=$gfortran
[4210]	417	fi
	418	#####################################################################
	419
	420	## if also compiling XIOS, parallel must be mpi_omp
	421	if [ "$with_xios" = "y" -a "$parallel" != "mpi_omp" ] ; then
[4215]	422	echo "Error, you must set -parallel mpi_omp if you want XIOS"
	423	exit
[4210]	424	fi
	425
	426	if [ "$with_xios" = "y" ] ; then
[4215]	427	opt_makelmdz_xios="-io xios"
[4210]	428	fi
	429
	430	if [ "$cosp" = "v2" -a "$with_xios" = "n" ] ; then
[4215]	431	echo "Error, Cospv2 cannot run without Xios"
	432	exit
[4210]	433	fi
	434
	435	echo '################################################################'
	436	echo Choix des options de compilation
	437	echo '################################################################'
	438
	439	export FC=$compiler
	440	export F90=$compiler
	441	export F77=$compiler
	442	export CPPFLAGS=
	443	OPTIMNC=$OPTIM
	444	BASE_LD="$OPT_GPROF"
	445	OPTPREC="$OPT_GPROF"
[4218]	446	ARFLAGS="rs"
	447	if [ -f /etc/issue ] ; then
	448	if [ "`grep -i ubuntu /etc/issue`" != "" ] ; then
	449	if [ "`grep -i ubuntu /etc/issue \| awk ' { print $2 } ' \| cut -d. -f1`" -ge 16 ]
	450	then
	451	ARFLAGS="rU"
	452	fi
	453	fi
	454	fi
[4210]	455
	456
	457
	458	if [ "$compiler" = "$gfortran" ] ; then
[4267]	459	OPTIM="-O3 $allow_arg_mismatch"
	460	OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -fbacktrace -finit-real=snan $allow_arg_mismatch"
	461	OPTDEV="-Wall -fbounds-check $allow_arg_mismatch"
	462	fmod='I '
	463	OPTPREC="$OPTPREC -cpp -ffree-line-length-0"
	464	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE" ; fi
	465	export F90FLAGS=" -ffree-form $OPTIMNC"
	466	export FFLAGS=" $OPTIMNC"
	467	export CC=gcc
	468	export CXX=g++
	469	export fpp_flags="-P -C -traditional -ffreestanding"
[4210]	470
	471	elif [ $compiler = mpif90 ] ; then
[4215]	472	OPTIM='-O3'
	473	OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all"
	474	OPTDEV="-Wall -fbounds-check"
	475	BASE_LD="$BASE_LD -lblas"
	476	fmod='I '
[4218]	477	if [ $real = r8 ] ; then
	478	OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE -fcray-pointer"
	479	fi
[4215]	480	export F90FLAGS=" -ffree-form $OPTIMNC"
	481	export FFLAGS=" $OPTIMNC"
	482	export CC=gcc
	483	export CXX=g++
[4210]	484
	485	elif [ $compiler = pgf90 ] ; then
[4215]	486	OPTIM='-O2 -Mipa -Munroll -Mnoframe -Mautoinline -Mcache_align'
	487	OPTDEB='-g -Mdclchk -Mbounds -Mchkfpstk -Mchkptr -Minform=inform -Mstandard -Ktrap=fp -traceback'
	488	OPTDEV='-g -Mbounds -Ktrap=fp -traceback'
	489	fmod='module '
	490	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -r8 -DNC_DOUBLE" ; fi
	491	export CPPFLAGS="-DpgiFortran"
	492	export CC=pgcc
	493	export CFLAGS="-O2 -Msignextend"
	494	export CXX=pgCC
	495	export CXXFLAGS="-O2 -Msignextend"
	496	export FFLAGS="-O2 $OPTIMNC"
	497	export F90FLAGS="-O2 $OPTIMNC"
	498	compile_with_fcm=1
[4210]	499
[4221]	500	elif [[ $compiler = ifort \|\| $compiler = mpiifort ]] ; then
[4215]	501	OPTIM="-O2 -fp-model strict -ip -align all "
	502	OPTDEV="-p -g -O2 -traceback -fp-stack-check -ftrapuv -check"
	503	OPTDEB="-g -no-ftz -traceback -ftrapuv -fp-stack-check -check"
	504	fmod='module '
	505	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi
	506	export CPP="icc -E"
	507	export FFLAGS="-O2 -ip -fpic -mcmodel=large"
	508	export FCFLAGS="-O2 -ip -fpic -mcmodel=large"
	509	export CC=icc
	510	export CFLAGS="-O2 -ip -fpic -mcmodel=large"
	511	export CXX=icpc
	512	export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
	513	export fpp_flags="-P -traditional"
	514	# Pourquoi forcer la compilation fcm. Marche mieux sans
	515	#compile_with_fcm=1
[4210]	516	else
[4215]	517	echo unexpected compiler $compiler ; exit
[4210]	518	fi
	519
	520	OPTIMGCM="$OPTIM $OPTPREC"
	521
	522	hostname=`hostname`
	523
	524	##########################################################################
	525	# If installing on known machines such as Jean-Zay at IDRIS,
	526	# don't check for available software and don't install netcdf
	527	if [ ${hostname:0:5} = jean- ] ; then
[4215]	528	netcdf=0 # no need to recompile netcdf, alreday available
	529	check_linux=0
	530	pclinux=0
	531	ioipsl=0 # no need to recompile ioipsl, already available
	532	#netcdf="/smplocal/pub/NetCDF/4.1.3"
	533	compiler="mpiifort"
	534	fmod='module '
	535	if [ $real = r8 ] ; then OPTPREC="$OPTPREC -i4 -r8 -DNC_DOUBLE" ; fi
	536	OPTIM="-auto -align all -O2 -fp-model strict -xHost "
	537	OPTIMGCM="$OPTIM $OPTPREC"
[4210]	538	fi
	539	##########################################################################
	540
	541
	542	mkdir -p $MODEL
	543	echo $MODEL
	544	MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary
	545
	546
	547	echo '################################################################'
	548	if [ "$check_linux" = 1 ] ; then
[4215]	549	echo Check if required software is available
	550	echo '################################################################'
[4210]	551
[4215]	552	#### Ehouarn: test if the required shell is available
	553	#### Maj FH-LF-AS 2021-04 : default=bash ; if bash missing, use ksh
	554	use_shell="bash" # default
	555	if [ "`which bash`" = "" ] ; then
	556	echo "no bash ; we will use ksh"
	557	use_shell="ksh"
	558	if [ "`which ksh`" = "" ] ; then
	559	echo "bash (or ksh) needed!! Install it!"
	560	exit
	561	fi
	562	fi
[4210]	563
[4215]	564	for logiciel in wget tar gzip make $compiler gcc cmake ; do
	565	if [ "`which $logiciel`" = "" ] ; then
	566	echo You must first install $logiciel on your system
	567	exit
	568	fi
	569	done
[4210]	570
[4215]	571	if [ $pclinux = 1 ] ; then
	572	cd $MODEL
	573	cat <<eod > tt.f90
[4210]	574	print*,'coucou'
	575	end
	576	eod
[4215]	577	$compiler tt.f90 -o a.out
	578	./a.out >\| tt
	579	if [ "`cat tt \| sed -e 's/ //g' `" != "coucou" ] ; then
	580	echo problem installing with compiler $compiler ; exit ; fi
	581	\rm tt a.out tt.f90
	582	fi
[4210]	583	fi
	584
	585	###########################################################################
	586	if [ $getlmdzor = 1 -a ! -d $MODEL/modipsl ] ; then
[4267]	587	###########################################################################
	588	echo '##########################################################'
	589	echo Download a slightly modified version of LMDZ
	590	echo '##########################################################'
	591	cd $MODEL
	592	getlog=`pwd`/get.log
	593	echo logfile : $getlog
	594	myget src/modipsl.$version.tar.gz >> get.log 2>&1
	595	echo install_lmdz.sh wget_OK `date`
	596	gunzip modipsl.$version.tar.gz >> get.log 2>&1
[4286]	597	tar xf modipsl.$version.tar >> get.log 2>&1
[4267]	598	\rm modipsl.$version.tar
[4210]	599	fi
	600
	601	###########################################################################
[4217]	602	if [ $netcdf = 1 ] ; then
[4215]	603	###########################################################################
	604	cd $MODEL
	605	netcdflog=`pwd`/netcdf.log
	606	echo '##########################################################'
	607	echo Compiling the Netcdf library
	608	echo '##########################################################'
	609	echo log file : $netcdflog
[4217]	610	if [[ "$with_xios" = "n" && ! -d $MODEL/netcdf4_hdf5_seq ]] ; then
[4267]	611	myget import/install_netcdf4_hdf5_seq.bash >> $netcdflog 2>&1
[4215]	612	chmod +x install_netcdf4_hdf5_seq.bash
[4212]	613
[4215]	614	if [ "$compiler" = "gfortran" ]
	615	then
	616	./install_netcdf4_hdf5_seq.bash -prefix $MODEL/netcdf4_hdf5_seq \
[4267]	617	-compiler gnu >> $netcdflog 2>&1
[4215]	618	elif [ "$compiler" = "ifort" ]
	619	then
	620	./install_netcdf4_hdf5_seq.bash -prefix $MODEL/netcdf4_hdf5_seq \
[4267]	621	-compiler intel >> $netcdflog 2>&1
[4215]	622	else
	623	echo "unexpected compiler $compiler" ; exit
	624	fi
[4212]	625
[4215]	626	# LF rajout d'une verrue, pour une raison non encore expliquee,
	627	# la librairie est parfois rangée dans lib64 et non dans lib
	628	# par certains compilateurs
	629	if [ ! -e lib -a -d lib64 ] ; then ln -s lib64 lib; fi
[4217]	630	elif [[ "$with_xios" = "y" && ! -d $MODEL/netcdf4_hdf5 ]]
	631	then
[4216]	632	# download and compile hdf5 and netcdf, etc. using the
	633	# install_netcdf4_hdf5.bash script
[4267]	634	myget import/install_netcdf4_hdf5.bash >> $netcdflog 2>&1
[4215]	635	chmod u=rwx install_netcdf4_hdf5.bash
	636	if [ "$compiler" = "gfortran" ] ; then
[4218]	637	./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC gcc \
[4267]	638	-FC gfortran -CXX g++ -MPI $root_mpi >> $netcdflog 2>&1
[4215]	639	elif [ "$compiler" = "ifort" ] ; then
[4218]	640	./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC icc \
[4267]	641	-FC ifort -CXX icpc -MPI $root_mpi >> $netcdflog 2>&1
[4215]	642	elif [ "$compiler" = "pgf90" ] ; then
[4218]	643	./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC pgcc \
[4267]	644	-FC pgf90 -CXX pgCC -MPI $root_mpi >> $netcdflog 2>&1
[4215]	645	else
	646	echo "unexpected compiler $compiler" ; exit
	647	fi
	648	fi # of if [ "$with_xios" = "n" ]
	649	echo install_lmdz.sh netcdf_OK `date`
[4210]	650	fi # of if [ $netcdf = 1 ]
	651
	652	# ncdfdir contains the directory where netcdf is installed
[4211]	653	if [ $netcdf = 1 ] ; then
[4215]	654	if [ "$with_xios" = "y" ] ; then
	655	ncdfdir=$MODEL/netcdf4_hdf5
	656	else
	657	ncdfdir=$MODEL/netcdf4_hdf5_seq
	658	fi
[4211]	659	elif [ $netcdf = 0 ]
	660	then
[4215]	661	ncdfdir=/usr
[4210]	662	else
[4215]	663	ncdfdir=$netcdf
[4210]	664	fi
	665
[4238]	666	cat >test_netcdf90.f90 <<EOF
[4239]	667	use netcdf
[4238]	668	print *, "NetCDF library version: ", nf90_inq_libvers()
	669	end
	670	EOF
	671
	672	$compiler -I$ncdfdir/include test_netcdf90.f90 -L$ncdfdir/lib -l netcdff \
[4267]	673	-lnetcdf -Wl,-rpath=$ncdfdir/lib && ./a.out
[4238]	674
	675	if (($? == 0))
	676	then
	677	rm test_netcdf90.f90 a.out
	678	else
	679	echo "Failed test program using NetCDF-Fortran."
	680	echo "You can:"
	681	echo "- check that you have NetCDF-Fortran installed in your system"
	682	echo "- or specify an installation directory with option -netcdf of" \
	683	"install_lmdz.sh"
	684	echo "- or download and compile NetCDF-Fortran with option -netcdf 1 of" \
	685	"install_lmdz.sh"
	686	exit 1
	687	fi
	688
[4210]	689	#=========================================================================
	690	if [[ ! -f $MODEL/modipsl/lib/libioipsl.a ]]
	691	then
[4215]	692	if [ $ioipsl = 1 ] ; then
[4218]	693	#=====================================================================
[4215]	694	echo OK ioipsl=$ioipsl
	695	echo '##########################################################'
	696	echo 'Installing MODIPSL, the installation package manager for the '
	697	echo 'IPSL models and tools'
	698	echo '##########################################################'
	699	echo `date`
[4210]	700
[4215]	701	cd $MODEL/modipsl
	702	\rm -rf lib/*
	703	cd util
	704	cp AA_make.gdef AA_make.orig
[4218]	705	F_C="$compiler -c "
	706	if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ]
	707	then
	708	F_C="$compiler -c -cpp "
	709	fi
[4215]	710	if [ "$compiler" = "pgf90" ] ; then F_C="$compiler -c -Mpreprocess" ; fi
	711	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
[4218]	712	sed -e "s:F_L = g95:F_L = $compiler:" \
	713	-e "s:F_C = g95 -c -cpp:F_C = $F_C": \
[4215]	714	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
	715	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= '"$ncdfdir"'/include:' \
	716	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdff -lnetcdf:' \
	717	-e 's:g95 L_O =:g95 L_O = -Wl,-rpath='"$ncdfdir"'/lib:' \
	718	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
	719	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
	720	tmp >\| AA_make.gdef
[4210]	721
[4215]	722	if [ $pcmac == 1 ]
	723	then
	724	cp AA_make.gdef tmp
	725	sed -e 's/rpath=/rpath,/g' tmp > AA_make.gdef
	726	fi
[4210]	727
	728
[4215]	729	# We use lines for g95 even for the other compilers to run ins_make
	730	if [ "$use_shell" = "ksh" ] ; then
	731	./ins_make $o_ins_make
	732	else # bash
	733	sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash
[4218]	734	if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then
	735	# Bidouille pour compiler sur ada des vieux modipsl.tar
[4215]	736	echo 'Warning jean-zay not in AA_make.gdef'
	737	echo 'Think about updating'
	738	exit 1
	739	fi
[4210]	740
[4215]	741	chmod u=rwx ins_make.bash
	742	./ins_make.bash $o_ins_make
	743	fi # of if [ "$use_shell" = "ksh" ]
[4210]	744
[4215]	745	echo install_lmdz.sh MODIPSL_OK `date`
[4210]	746
[4215]	747	cd $MODEL/modipsl/modeles/IOIPSL/src
	748	ioipsllog=`pwd`/ioipsl.log
	749	echo '##########################################################'
	750	echo 'Compiling IOIPSL, the interface library with Netcdf'
	751	echo '##########################################################'
	752	echo `date`
	753	echo log file : $ioipsllog
[4210]	754
[4215]	755	if [ "$use_shell" = "bash" ] ; then
	756	cp Makefile Makefile.ksh
	757	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
	758	fi
	759	# if [ "$pclinux" = 1 ] ; then
	760	# Build IOIPSL modules and library
	761	$make clean
	762	$make > $ioipsllog 2>&1
[4218]	763	if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then
	764	# copy module files to lib
[4215]	765	cp -f *.mod ../../../lib
	766	fi
	767	# Build IOIPSL tools (ie: "rebuild", if present)
	768	if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then
	769	cd $MODEL/modipsl/modeles/IOIPSL/tools
	770	# adapt Makefile & rebuild script if in bash
	771	if [ "$use_shell" = "bash" ] ; then
	772	cp Makefile Makefile.ksh
	773	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
	774	cp rebuild rebuild.ksh
	775	sed -e 's:/bin/ksh:/bin/bash:g' \
	776	-e 's:print -u2:echo:g' \
	777	-e 's:print:echo:g' rebuild.ksh > rebuild
	778	fi
	779	$make clean
	780	$make > $ioipsllog 2>&1
	781	fi
	782	# fi # of if [ "$pclinux" = 1 ]
[4210]	783
[4215]	784	else # of if [ $ioipsl = 1 ]
	785	if [ ${hostname:0:5} = jean- ] ; then
	786	cd $MODEL/modipsl
	787	cd util
	788	if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then
	789	echo 'Warning jean-zay not in AA_make.gdef'
	790	echo 'Think about updating'
	791	exit 1
	792	fi
	793	./ins_make $o_ins_make
	794	# Compile IOIPSL on jean-zay
	795	cd $MODEL/modipsl/modeles/IOIPSL/src
	796	gmake > ioipsl.log
	797	cd $MODEL/modipsl/modeles/IOIPSL/tools
	798	gmake > ioipsl.log
[4210]	799
[4215]	800	fi
	801	echo install_lmdz.sh ioipsl_OK `date`
	802	fi # of if [ $ioipsl = 1 ]
[4210]	803	fi
	804	# Saving ioipsl lib for possible parallel compile
[4215]	805	cd $MODEL/modipsl
	806	tar cf ioipsl.tar lib/ bin/
[4210]	807
	808	#=========================================================================
	809	if [ "$with_xios" = "y" ] ; then
[4215]	810	echo '##########################################################'
	811	echo 'Compiling XIOS'
	812	echo '##########################################################'
	813	cd $MODEL/modipsl/modeles
	814	xioslog=`pwd`/xios.log
	815	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash
	816	myget import/install_xios.bash
	817	chmod u=rwx install_xios.bash
	818	if [ ${hostname:0:5} = jean- ] ; then
[4218]	819	svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-2.5 \
	820	XIOS
[4215]	821	cd XIOS/arch
	822	svn update
	823	cd ..
[4218]	824	echo "Compiling XIOS, start" `date` \
	825	"(it takes about 20 min on Jean-Zay)"
[4215]	826	echo "log file: $xioslog"
	827	./make_xios --prod --arch $arch --job 4 > xios.log 2>&1
	828	else
	829	./install_xios.bash -prefix $MODEL/modipsl/modeles \
	830	-netcdf ${ncdfdir} -hdf5 ${ncdfdir} \
	831	-MPI $root_mpi -arch $arch > xios.log 2>&1
	832	fi # of case Jean-Zay
	833	if [ -f XIOS/lib/libxios.a ] ; then
	834	echo "XIOS library successfully generated"
	835	echo install_lmdz.sh XIOS_OK `date`
	836	fi
[4210]	837	fi
	838
	839	#============================================================================
	840	veget_version=false
	841	if [ "$veget" != 'NONE' ] ; then
[4215]	842	cd $MODEL/modipsl/modeles/ORCHIDEE
	843	set +e ; svn upgrade ; set -e
	844	if [ "$veget" = "CMIP6" ] ; then
	845	veget_version=orchidee2.0
	846	orchidee_rev=6592
	847	else # specific orchidee revision newer than CMIP6, on 2_1 or 2_2 branches
	848	veget_version=orchidee2.1
	849	orchidee_rev=$veget
	850	if [ $veget -lt 4465 ] ; then
[4218]	851	echo 'Stopping, ORCHIDEE version too old, script needs work on ' \
	852	'the CPP flags to pass to makelmdz'
[4215]	853	exit 1
	854	fi
	855	set +e
	856	# which branch is my version on?
	857	orcbranch=`svn log -v -q svn://forge.ipsl.jussieu.fr/orchidee/ -r $veget \|grep ORCHIDEE \|head -1\| sed -e 's:ORCHIDEE/.*$:ORCHIDEE:' \| awk '{print $2}'`
	858	# switch to that branch
[4218]	859	echo IF YOU INSTALL ORCHIDEE THE VERY FIRST TIME, ASK for PASSWORD at \
	860	orchidee-help@listes.ipsl.fr
	861	svn switch -r $veget --accept theirs-full \
	862	svn://forge.ipsl.jussieu.fr/orchidee/$orcbranch
[4215]	863	svn log -r $veget \| grep $veget
	864	if [ $? -gt 0 ] ; then
[4218]	865	echo 'Cannot update ORCHIDEE as not on the right branch for ' \
	866	'ORCHIDEE'
[4215]	867	exit
	868	fi
	869	set -e
	870	set +e ; svn update -r $veget ; set -e
	871	fi
	872	# Correctif suite debug Jean-Zay
[4218]	873	sed -i -e 's/9010 FORMAT(A52,F17.14)/9010 FORMAT(A52,F20.14)/' \
	874	src_stomate/stomate.f90
[4215]	875	opt_orc="-prod" ; if [ "$optim" = "-debug" ] ; then opt_orc="-debug" ; fi
[4210]	876
[4215]	877	orchideelog=`pwd`/orchidee.log
	878	echo '########################################################'
	879	echo 'Compiling ORCHIDEE, the continental surface model '
	880	echo '########################################################'
	881	echo Start of the first compilation of orchidee, in sequential mode: `date`
	882	echo log file : $orchideelog
[4210]	883
[4215]	884	export ORCHPATH=`pwd`
	885	xios_orchid="-noxios"
	886	if [ "$with_xios" = "y" ] ; then
	887	xios_orchid="-xios"
	888	fi
	889	if [ -d tools ] ; then
	890	###################################################################
	891	# Pour les experts qui voudraient changer de version d'orchidee.
	892	# Attention : necessite d'avoir le password pour orchidee
[4210]	893
[4215]	894	# Correctif suite debug Jean-Zay
[4218]	895	if [ -f src_global/time.f90 ] ; then
	896	sed -i -e 's/CALL tlen2itau/\!CALL tlen2itau/' src_global/time.f90
	897	fi
[4215]	898	###################################################################
[4218]	899	if [ "$veget_version" == "false" ] ; then
	900	veget_version=orchidee2.0
	901	fi
[4215]	902	cd arch
	903	sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \
	904	-e s:"%LINK .*.$":"%LINK $compiler":1 \
	905	-e s:"%FPP_FLAGS .*.$":"%FPP_FLAGS $fpp_flags":1 \
	906	-e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \
	907	-e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \
	908	-e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \
	909	-e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \
	910	-e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \
	911	-e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \
	912	arch-gfortran.fcm > arch-local.fcm
[4218]	913	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" \
	914	> arch-local.path
[4215]	915	echo "NETCDF_INCDIR=${ncdfdir}/include" >> arch-local.path
	916	echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path
	917	echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path
	918	echo 'XIOS_INCDIR=${ORCHDIR}/../XIOS/inc' >> arch-local.path
	919	echo 'XIOS_LIBDIR="${ORCHDIR}/../XIOS/lib -lxios"' >> arch-local.path
	920	cd ../
[4210]	921
[4218]	922	echo ./makeorchidee_fcm -j $xios_orchid $opt_orc -parallel none \
	923	-arch $arch
	924	./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel none \
	925	-arch $arch > $orchideelog 2>&1
[4215]	926	pwd
	927	else # of "if [ -d tools ]"
	928	if [ -d src_parallel ] ; then
	929	liste_src="parallel parameters global stomate sechiba driver"
[4218]	930	if [ "$veget_version" == "false" ] ; then
	931	veget_version=orchidee2.0
	932	fi
[4215]	933	fi
[4218]	934	for d in $liste_src ; do
	935	src_d=src_$d
	936	echo src_d $src_d
	937	echo ls ; ls
	938	if [ ! -d $src_d ] ; then
	939	echo Problem orchidee : no $src_d ; exit
	940	fi
	941	cd $src_d ; \rm -f *.mod make ; $make clean
	942	$make > $orchideelog 2>&1
	943	if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then
	944	cp -f *.mod ../../../lib
	945	fi
	946	cd ..
[4215]	947	done
	948	fi # of "if [ -d tools ]"
	949	echo install_lmdz.sh orchidee_compil_seq_OK `date`
[4210]	950	fi # of if [ "$veget" != 'NONE' ]
	951
	952
	953	#============================================================================
	954	# Ehouarn: the directory name LMDZ* depends on version/tar file...
	955	if [ -d $MODEL/modipsl/modeles/LMD* ] ; then
[4215]	956	echo '###############################################################'
	957	echo 'Preparing LMDZ compilation : arch file, svn switch if needed...'
	958	echo '###############################################################'
	959	cd $MODEL/modipsl/modeles/LMD*
	960	LMDZPATH=`pwd`
[4210]	961	else
[4215]	962	echo "ERROR: No LMD* directory !!!"
	963	exit
[4210]	964	fi
	965
	966	###########################################################
	967	# For those who want to use fcm to compile via :
	968	# makelmdz_fcm -arch local .....
	969	############################################################
	970
[4214]	971	if [[ "$pclinux" = "1" && ! -f arch/arch-local.path ]] ; then
[4210]	972
[4215]	973	# create local 'arch' files (if on Linux PC):
	974	cd arch
	975	# arch-local.path file
[4218]	976	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" \
	977	> arch-local.path
[4215]	978	echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
	979	echo 'NETCDF95_INCDIR=$LMDGCM/../../include' >> arch-local.path
	980	echo 'NETCDF95_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
	981	echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path
	982	echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
	983	echo 'XIOS_INCDIR=$LMDGCM/../XIOS/inc' >> arch-local.path
	984	echo 'XIOS_LIBDIR=$LMDGCM/../XIOS/lib' >> arch-local.path
	985	echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path
	986	echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
[4210]	987
[4215]	988	if [ $pcmac == 1 ] ; then
	989	BASE_LD="$BASE_LD -Wl,-rpath,${ncdfdir}/lib"
	990	else
	991	BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib"
	992	fi
	993	# Arch-local.fcm file (adapted from arch-linux-32bit.fcm)
[4210]	994
[4215]	995	if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi
	996	sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \
	997	-e s:"%LINK .*.$":"%LINK $compiler":1 \
	998	-e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \
	999	-e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \
	1000	-e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \
	1001	-e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \
	1002	-e s:"%FPP_DEF .*.$":"%FPP_DEF $FPP_DEF":1 \
	1003	-e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \
	1004	-e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \
	1005	arch-linux-32bit.fcm > arch-local.fcm
[4210]	1006
[4215]	1007	cd ..
	1008	### Adapt "bld.cfg" (add the shell):
	1009	#whereisthatshell=$(which ${use_shell})
	1010	#echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg
[4210]	1011
	1012	fi # of if [ "$pclinux" = 1 ]
	1013
	1014
	1015	cd $MODEL/modipsl/modeles/LMDZ*
	1016	lmdzlog=`pwd`/lmdz.log
	1017
	1018	##################################################################
	1019	# Possibly update LMDZ if a specific svn release is requested
	1020	##################################################################
	1021
	1022	set +e ; svn upgrade ; set -e
	1023
	1024	if [ "$svn" = "last" ] ; then svnopt="" ; else svnopt="-r $svn" ; fi
	1025	if [ "$svn" != "" ] ; then
	1026	set +e ; svn info \| grep -q 'http:'
	1027	if [ $? = 0 ] ; then
[4218]	1028	svn switch --relocate http://svn.lmd.jussieu.fr/LMDZ \
	1029	https://svn.lmd.jussieu.fr/LMDZ
[4210]	1030	fi
	1031	svn update $svnopt
	1032	fi
	1033	set -e
	1034
	1035	##################################################################
[4218]	1036	# Retrieve the final svn release number, and adjust compilation
	1037	# options accordingly
[4210]	1038	mysvn=`svnversion . \| egrep -o "[0-9]+"`
	1039
	1040	# Option de compilation du rayonnement : depend de $mysvn ><= r4185
	1041	opt_rad=""
	1042
	1043	case $rad in
	1044	oldrad) iflag_rrtm=0 ; NSW=2 ; opt_rad="" ;;
[4218]	1045	rrtm) iflag_rrtm=1 ; NSW=6
	1046	if [ $mysvn -le 4185 ] ; then
	1047	opt_rad="-rrtm true"
	1048	else
	1049	opt_rad="-rad rrtm"
	1050	fi ;;
[4210]	1051	ecrad) iflag_rrtm=2 ; NSW=6 ; opt_rad="-rad ecrad" ;;
	1052	*) echo Only oldrad rrtm ecrad for rad option ; exit
	1053	esac
	1054
[4218]	1055	if [ $mysvn -le 4185 -a $rad = "ecrad" ] ; then
	1056	echo "ecrad only available for LMDZ rev starting with 4186 " ; exit
	1057	fi
[4210]	1058
	1059	##################################################################
	1060
[4213]	1061
	1062	if [[ ! -f libf/misc/netcdf95.F90 && ! -d $MODEL/NetCDF95-0.2 ]]
	1063	then
	1064	cd $MODEL
	1065	myget import/NetCDF95-0.2.tar.gz
	1066	tar -xf NetCDF95-0.2.tar.gz
	1067	rm NetCDF95-0.2.tar.gz
	1068	cd NetCDF95-0.2
	1069	mkdir build
	1070	cd build
	1071	cmake .. -DCMAKE_BUILD_TYPE=Release -DCMAKE_PREFIX_PATH=$ncdfdir \
	1072	-DCMAKE_INSTALL_PREFIX=$MODEL/modipsl
	1073	make install
	1074	cd $MODEL/modipsl/modeles/LMDZ*
	1075	fi
	1076
[4210]	1077	echo '##################################################################'
	1078	echo "Preparing script compile.sh for LMDZ compilation"
	1079	echo "It will only be run automatically if bench=1/tuto"
	1080	echo Here bench=$bench
	1081	echo '##################################################################'
	1082
[4218]	1083	if [ "$env_file" != "" ] ; then
	1084	mv arch/arch-${arch}.env arch/arch-${arch}.orig
	1085	\cp -f $env_file arch/arch-${arch}.env
	1086	fi
[4210]	1087
[4218]	1088	if [ $compile_with_fcm = 1 ] ; then
	1089	makelmdz="makelmdz_fcm $optim -arch $arch -j 8 "
	1090	else
	1091	makelmdz="makelmdz $optim -arch $arch"
	1092	fi
[4210]	1093
	1094	# sequential compilation
	1095	if [ "$sequential" = 1 ] ; then
[4215]	1096	echo Sequential compilation command, saved in compile.sh:
[4218]	1097	echo "./$makelmdz $optim $OPT_MAKELMDZ $optim $opt_rad $opt_cosp " \
	1098	"-d ${grid_resolution} -v $veget_version gcm "
	1099	echo "./$makelmdz $optim $OPT_MAKELMDZ $optim $opt_rad $opt_cosp " \
	1100	"-d ${grid_resolution} -v $veget_version gcm " > compile.sh
[4215]	1101	chmod +x ./compile.sh
	1102	if [ $bench = 1 ] ; then
	1103	echo install_lmdz.sh start_lmdz_seq_compilation `date`
	1104	echo log file: $lmdzlog
	1105	./compile.sh > $lmdzlog 2>&1
	1106	echo install_lmdz.sh end_lmdz_seq_compilation `date`
	1107	fi
[4210]	1108	fi # fin sequential
	1109
	1110	# compiling in parallel mode
	1111	if [ $parallel != "none" ] ; then
	1112	echo '##########################################################'
[4215]	1113	echo ' Parallel compile '
[4210]	1114	echo '##########################################################'
[4215]	1115	echo "(after saving the sequential libs and binaries)"
	1116	cd $MODEL/modipsl
	1117	tar cf sequential.tar bin/ lib/
	1118	\rm -rf bin/ lib/
	1119	tar xf ioipsl.tar
	1120	#
	1121	# Orchidee
	1122	#
	1123	cd $ORCHPATH
	1124	if [ -d src_parallel -a $veget != 'NONE' ] ; then
	1125	cd arch
	1126	sed \
	1127	-e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \
	1128	-e s:"%LINK.*.$":"%LINK $par_comp":1 \
	1129	-e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \
	1130	-e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \
	1131	-e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \
	1132	-e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \
	1133	arch-local.fcm > tmp.fcm
[4210]	1134
[4215]	1135	mv tmp.fcm arch-local.fcm
	1136	cd ../
	1137	echo Compiling ORCHIDEE in parallel mode `date`
	1138	echo logfile $orchideelog
[4218]	1139	echo "NOTE : to recompile it when necessary, use ./compile_orc.sh " \
	1140	"in modipsl/modeles/ORCHIDEE"
	1141	echo ./makeorchidee_fcm -j 8 -clean $xios_orchid $opt_orc \
	1142	-parallel $parallel -arch $arch > compile_orc.sh
	1143	echo ./makeorchidee_fcm -j 8 $xios_orchid $opt_orc \
	1144	-parallel $parallel -arch $arch >> compile_orc.sh
	1145	echo echo Now you must also recompile LMDZ, by running ./compile.sh \
	1146	in modeles/LMDZ >> compile_orc.sh
[4215]	1147	chmod u+x compile_orc.sh
[4218]	1148	./makeorchidee_fcm -j 8 -clean $xios_orchid $opt_orc \
	1149	-parallel $parallel -arch $arch > $orchideelog 2>&1
	1150	./makeorchidee_fcm -j 8 $xios_orchid $opt_orc -parallel $parallel \
	1151	-arch $arch >> $orchideelog 2>&1
[4215]	1152	echo End of ORCHIDEE compilation in parallel mode `date`
	1153	elif [ $veget != 'NONE' ] ; then
	1154	echo '##########################################################'
	1155	echo ' Orchidee version too old '
	1156	echo ' Please update to new version '
	1157	echo '##########################################################'
	1158	exit
	1159	fi # of [ -d src_parallel -a $veget != 'NONE' ]
[4210]	1160
[4215]	1161	# LMDZ
	1162	cd $LMDZPATH
	1163	if [ $arch = local ] ; then
	1164	cd arch
	1165	sed -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \
	1166	-e s:"%LINK.*.$":"%LINK $par_comp":1 \
	1167	-e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \
	1168	-e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \
	1169	-e s:"%ARFLAGS.*.$":"%ARFLAGS $ARFLAGS":1 \
	1170	-e s@"%BASE_LD.*.$"@"%BASE_LD -Wl,-rpath=${root_mpi}/lib:${ncdfdir}/lib"@1 \
	1171	-e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \
	1172	-e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \
	1173	arch-local.fcm > tmp.fcm
	1174	mv tmp.fcm arch-local.fcm
	1175	cd ../
	1176	fi
	1177	rm -f compile.sh
	1178	echo resol=${grid_resolution} >> compile.sh
	1179	if [ ${hostname:0:5} = jean- -a "$cosp" = "v2" ] ; then
[4210]	1180
[4218]	1181	echo LMDZ compilation command in parallel mode, saved in compile.sh, \
	1182	is :
	1183	echo "(ATTENTION le probleme de cospv2 sur jean-zay en mode prod " \
	1184	"n est pas corrige ! )"
	1185	# ATTENTION le probleme de cospv2 sur jean-zay en mode prod n
	1186	# est pas corrige
	1187	echo ./$makelmdz -dev $optim $OPT_MAKELMDZ $opt_rad $opt_cosp \
	1188	$opt_makelmdz_xios -d \$resol -v $veget_version -mem \
	1189	-parallel $parallel gcm >> compile.sh
	1190	echo ./$makelmdz -dev $optim $OPT_MAKELMDZ $opt_rad $opt_cosp \
	1191	$opt_makelmdz_xios -d \$resol -v $veget_version -mem \
	1192	-parallel $parallel gcm
[4215]	1193	else
[4218]	1194	echo ./$makelmdz $optim $OPT_MAKELMDZ $opt_rad $opt_cosp \
	1195	$opt_makelmdz_xios -d \$resol -v $veget_version -mem \
	1196	-parallel $parallel gcm >> compile.sh
	1197	echo ./$makelmdz $optim $OPT_MAKELMDZ $opt_rad $opt_cosp \
	1198	$opt_makelmdz_xios -d \$resol -v $veget_version -mem \
	1199	-parallel $parallel gcm
[4215]	1200	fi
	1201	chmod +x ./compile.sh
[4210]	1202
[4215]	1203	if [ $bench = 1 ] ; then
[4218]	1204	echo Compiling LMDZ in parallel mode `date`, LMDZ log file: $lmdzlog
	1205	./compile.sh > $lmdzlog 2>&1
[4215]	1206	fi
	1207
[4210]	1208	fi # of if [ $parallel != "none" ]
	1209
	1210
	1211	##################################################################
	1212	# Verification du succes de la compilation
	1213	##################################################################
	1214
	1215	# Recherche de l'executable dont le nom a change au fil du temps ...
	1216	# suffix contains radiative option starting with revision 4186
	1217	if [ $mysvn -ge 4186 ] ; then suff_exe=_${rad}${suff_exe} ; fi
	1218	gcm=""
[4219]	1219
[4218]	1220	for exe in gcm.e bin/gcm_${grid_resolution}_phylmd${suff_exe}${suff_orc}.e
	1221	do
	1222	if [ -f $exe ] ; then gcm=$exe ; fi
[4210]	1223	done
	1224
	1225	if [ "$gcm" = "" ] ; then
[4215]	1226	if [ $bench = 1 ] ; then
	1227	echo 'Compilation failed !! Cannot run the benchmark;'
	1228	exit
	1229	else
	1230	echo 'Compilation not done (only done when bench=1)'
	1231	fi
[4210]	1232	else
[4215]	1233	echo '##########################################################'
	1234	echo 'Compilation successfull !! ' `date`
	1235	echo '##########################################################'
	1236	echo The executable is $gcm
[4210]	1237	fi
	1238
	1239	##################################################################
	1240	# Below, we run a benchmark if bench=1 or tuto
	1241	##################################################################
	1242
	1243	if [ $bench = tuto ] ; then
[4286]	1244	myget Training/tutorial.tar ; tar xf tutorial.tar ; cd TUTORIAL
[4218]	1245	./init.sh
[4210]	1246
	1247	elif [[ $bench = 1 && ! -d BENCH${grid_resolution} ]] ; then
[4215]	1248	# TOUTE CETTE SECTION DEVRAIT DISPARAITRE POUR UNE COMMANDE
	1249	# OU DES BENCHS PAR MOTS CLES COMME tuto
[4210]	1250
[4215]	1251	echo '##########################################################'
	1252	echo ' Running a test run '
	1253	echo '##########################################################'
[4210]	1254
[4215]	1255	\rm -rf BENCH${grid_resolution}
	1256	bench=bench_lmdz_${grid_resolution}
	1257	echo install_lmdz.sh before bench download `date`
	1258	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$bench.tar.gz
	1259	myget 3DBenchs/$bench.tar.gz
	1260	echo install_lmdz.sh after bench download `date`
[4286]	1261	tar xf $bench.tar.gz
[4210]	1262
[4215]	1263	if [ "$cosp" = "v1" -o "$cosp" = "v2" ] ; then
	1264	cd BENCH${grid_resolution}
	1265	# copier les fichiers namelist input et output our COSP
	1266	cp ../DefLists/cosp*_input_nl.txt .
	1267	cp ../DefLists/cosp*_output_nl.txt .
	1268	# Activer la cles ok_cosp pour tourner avec COSP
	1269	sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp
	1270	\mv -f tmp config.def
	1271	cd ..
	1272	fi
[4210]	1273
[4215]	1274	if [ -n "$physiq" ]; then
	1275	cd BENCH${grid_resolution}
	1276	if [ -f physiq.def_${physiq} ]; then
	1277	cp physiq.def_${physiq} physiq.def
	1278	echo using physiq.def_${physiq}
	1279	else
	1280	echo using standard physiq.def
	1281	fi
	1282	cd ..
	1283	else
	1284	echo using standard physiq.def
	1285	fi
[4210]	1286
[4215]	1287	if [ "$with_xios" = "y" ] ; then
	1288	cd BENCH${grid_resolution}
	1289	cp ../DefLists/iodef.xml .
	1290	cp ../DefLists/context_lmdz.xml .
	1291	cp ../DefLists/field_def_lmdz.xml .
	1292	# A raffiner par la suite
	1293	echo A FAIRE : Copier les *xml en fonction de l option cosp
	1294	cp ../DefLists/field_def_cosp*.xml .
	1295	cp ../DefLists/file_def_hist*xml .
	1296	# adapt iodef.xml to use attached mode
[4218]	1297	sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' \
	1298	iodef.xml > tmp
[4215]	1299	\mv -f tmp iodef.xml
[4210]	1300
[4215]	1301	# and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE.
	1302	# except for histday
	1303	for histfile in file_def_hist*xml
	1304	do
	1305	if [ "$histfile" = "file_def_histday_lmdz.xml" ] ; then
[4218]	1306	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' \
	1307	$histfile > tmp
	1308	\mv -f tmp $histfile
	1309	sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile \
	1310	> tmp
	1311	\mv -f tmp $histfile
	1312	sed -e 's@compression_level="2"@compression_level="0"@' \
	1313	$histfile > tmp
	1314	\mv -f tmp $histfile
[4215]	1315	else
[4218]	1316	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
	1317	$histfile > tmp
	1318	\mv -f tmp $histfile
[4215]	1319	fi
	1320	done
	1321	# and add option "ok_all_xml=y" in config.def
	1322	echo "### XIOS outputs" >> config.def
	1323	echo 'ok_all_xml=.true.' >> config.def
[4210]	1324
[4215]	1325	#activer les sorties pour Cosp
	1326	if [ "$cosp" = "v1" ] ; then
	1327	histfile=file_def_histdayCOSP_lmdz.xml
[4218]	1328	sed -e 's@enabled=".FALSE."@enabled=".TRUE."@' $histfile > tmp
	1329	\mv -f tmp $histfile
	1330	sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile > tmp
	1331	\mv -f tmp $histfile
	1332	sed -e 's@compression_level="2"@compression_level="0"@' \
	1333	$histfile > tmp
	1334	\mv -f tmp $histfile
[4215]	1335	fi
	1336	if [ "$cosp" = "v2" ] ; then
	1337	histfile=file_def_histdayCOSPv2_lmdz.xml
[4218]	1338	sed -e 's@compression_level="2"@compression_level="0"@' \
	1339	$histfile > tmp
	1340	\mv -f tmp $histfile
[4215]	1341	contextfile=context_lmdz.xml
[4218]	1342	sed -e 's@src="./file_def_histdayCOSP_lmdz.xml"@src="./file_def_histdayCOSPv2_lmdz.xml"@' \
	1343	$contextfile > tmp
	1344	\mv -f tmp $contextfile
	1345	sed -e 's@src="./file_def_histmthCOSP_lmdz.xml"@src="./file_def_histmthCOSPv2_lmdz.xml"@' \
	1346	$contextfile > tmp
	1347	\mv -f tmp $contextfile
	1348	sed -e 's@src="./file_def_histhfCOSP_lmdz.xml"@src="./file_def_histhfCOSPv2_lmdz.xml"@' \
	1349	$contextfile > tmp
	1350	\mv -f tmp $contextfile
[4215]	1351	fieldfile=field_def_lmdz.xml
[4218]	1352	sed -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' $fieldfile \
	1353	> tmp
	1354	\mv -f tmp $fieldfile
[4215]	1355	fi
[4210]	1356
[4215]	1357	cd ..
	1358	fi
[4210]	1359
[4215]	1360	# Cas Bensh avec ecrad
	1361	if [ "$rad" = "ecrad" ] ; then
	1362	cd BENCH${grid_resolution}
	1363	cp ../DefLists/namelist_ecrad .
	1364	cp -r ../libf/phylmd/ecrad/data .
	1365	cd ..
	1366	fi
[4210]	1367
[4215]	1368	# Adjusting bench physiq.def to radiative code chosen
	1369	cd BENCH${grid_resolution}
[4218]	1370	sed -e 's/iflag_rrtm=.*.$/iflag_rrtm='$iflag_rrtm'/' \
	1371	-e 's/NSW=.*.$/NSW='$NSW'/' physiq.def > tmpdef
[4215]	1372	\mv tmpdef physiq.def
	1373	cd ..
[4210]	1374
[4215]	1375	cp $gcm BENCH${grid_resolution}/gcm.e
[4210]	1376
[4215]	1377	cd BENCH${grid_resolution}
	1378	# On cree le fichier bench.sh au besoin
	1379	# Dans le cas 48x36x39 le bench.sh existe deja en parallele
[4210]	1380
[4215]	1381	if [ "$grid_resolution" = "48x36x39" ] ; then
	1382	echo On ne touche pas au bench.sh
	1383	# But we have to adapt "run_local.sh" for $mpirun
	1384	sed -e "s@mpirun@$mpirun@g" run_local.sh > tmp
	1385	mv -f tmp run_local.sh
	1386	chmod u=rwx run_local.sh
	1387	elif [ "${parallel:0:3}" = "mpi" ] ; then
	1388	# Lancement avec deux procs mpi et 2 openMP
	1389	echo "export OMP_STACKSIZE=800M" > bench.sh
	1390	if [ "${parallel:4:3}" = "omp" ] ; then
	1391	echo "export OMP_NUM_THREADS=2" >> bench.sh
	1392	fi
	1393	if [ "$cosp" = "v1" -o "$cosp" = "v2" ] ; then
	1394	if [ ${hostname:0:5} = jean- ] ; then
	1395	chmod +x ../arch.env
	1396	../arch.env
	1397	echo "ulimit -s 2000000" >> bench.sh
	1398	else
	1399	echo "ulimit -s 200000" >> bench.sh
	1400	fi
	1401	else
	1402	echo "ulimit -s unlimited" >> bench.sh
	1403	fi
	1404	if [ ${hostname:0:5} = jean- ] ; then
	1405	. ../arch/arch-${arch}.env
[4218]	1406	echo "srun -n 2 -A $idris_acct@cpu gcm.e > listing 2>&1" \
	1407	>> bench.sh
[4215]	1408	else
	1409	echo "$mpirun -np 2 gcm.e > listing 2>&1" >> bench.sh
	1410	fi
	1411	# Add rebuild, using reb.sh if it is there
	1412	echo 'if [ -f reb.sh ] ; then' >> bench.sh
[4218]	1413	echo ' ./reb.sh histday ; ./reb.sh histmth ; ./reb.sh histhf ; ' \
	1414	'./reb.sh histins ; ./reb.sh stomate_history ; ' \
	1415	'./reb.sh sechiba_history ; ./reb.sh sechiba_out_2 ' >> bench.sh
[4215]	1416	echo 'fi' >> bench.sh
	1417	else
	1418	echo "./gcm.e > listing 2>&1" > bench.sh
	1419	fi
	1420	# Getting orchidee stuff
	1421	if [ $veget == 'CMIP6' ] ; then
	1422	#echo 'myget 3DBenchs/BENCHorch11.tar.gz'
	1423	#myget 3DBenchs/BENCHorch11.tar.gz
	1424	#tar xvzf BENCHorch11.tar.gz
	1425	echo 'myget 3DBenchs/BENCHCMIP6.tar.gz'
	1426	myget 3DBenchs/BENCHCMIP6.tar.gz
	1427	tar xvzf BENCHCMIP6.tar.gz
	1428	sed -e "s:VEGET=n:VEGET=y:" config.def > tmp
	1429	mv -f tmp config.def
	1430	if [ "$with_xios" = "y" ] ; then
	1431	cp ../../ORCHIDEE/src_xml/context_orchidee.xml .
[4218]	1432	echo '<context id="orchidee" src="./context_orchidee.xml"/>' \
	1433	> add.tmp
[4215]	1434	cp ../../ORCHIDEE/src_xml/field_def_orchidee.xml .
	1435	cp ../../ORCHIDEE/src_xml/file_def_orchidee.xml .
	1436	cp ../../ORCHIDEE/src_xml/file_def_input_orchidee.xml .
	1437	if [ -f ../../ORCHIDEE/src_xml/context_input_orchidee.xml ] ; then
	1438	cp ../../ORCHIDEE/src_xml/context_input_orchidee.xml .
[4218]	1439	echo '<context id="orchidee" ' \
	1440	'src="./context_input_orchidee.xml"/>' >> add.tmp
[4215]	1441	fi
	1442	sed -e '/id="LMDZ"/r add.tmp' iodef.xml > tmp
	1443	mv tmp iodef.xml
[4218]	1444	sed -e'{/sechiba1/ s/enabled="_AUTO_"/type="one_file" enabled=".TRUE."/}' \
	1445	file_def_orchidee.xml > tmp
	1446	\mv -f tmp file_def_orchidee.xml
	1447	sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' \
	1448	file_def_orchidee.xml > tmp
	1449	\mv -f tmp file_def_orchidee.xml
	1450	sed -e 's@output_level="_AUTO_"@output_level="1"@' \
	1451	file_def_orchidee.xml > tmp
	1452	\mv -f tmp file_def_orchidee.xml
	1453	sed -e 's@output_freq="_AUTO_"@output_freq="1d"@' \
	1454	file_def_orchidee.xml > tmp
	1455	\mv -f tmp file_def_orchidee.xml
	1456	sed -e 's@compression_level="4"@compression_level="0"@' \
	1457	file_def_orchidee.xml > tmp
	1458	\mv -f tmp file_def_orchidee.xml
	1459	sed -e 's@XIOS_ORCHIDEE_OK = n@XIOS_ORCHIDEE_OK = y@' \
	1460	orchidee.def > tmp
	1461	\mv -f tmp orchidee.def
[4215]	1462	fi
	1463	fi
[4220]	1464
	1465	if [[ -f ../arch.env ]]
	1466	then
	1467	source ../arch.env
	1468	fi
	1469
[4215]	1470	echo EXECUTION DU BENCH
	1471	set +e
	1472	date ; ./bench.sh > out.bench 2>&1 ; date
	1473	set -e
	1474	tail listing
[4210]	1475
	1476
[4215]	1477	echo '##########################################################'
	1478	echo 'Simulation finished in' `pwd`
	1479	echo 'You have compiled with:'
	1480	cat ../compile.sh
	1481	if [ $parallel = "none" ] ; then
	1482	echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e'
	1483	echo 'or ./bench.sh'
	1484	else
	1485	echo 'You may re-run it with : '
	1486	echo 'cd ' `pwd` '; ./bench.sh'
	1487	# echo 'ulimit -s unlimited'
	1488	# echo 'export OMP_NUM_THREADS=2'
	1489	# echo 'export OMP_STACKSIZE=800M'
	1490	# echo "$mpirun -np 2 gcm.e "
	1491	fi
	1492	echo '##########################################################'
[4210]	1493
	1494	fi # bench
	1495
	1496
	1497	#################################################################
	1498	# Installation eventuelle du 1D
	1499	#################################################################
	1500
	1501	if [ $SCM = 1 ] ; then
[4215]	1502	cd $MODEL
	1503	#wget http://www.lmd.jussieu.fr/~lmdz/Distrib/1D.tar.gz
	1504	myget 1D/1D.tar.gz
[4286]	1505	tar xf 1D.tar.gz
[4215]	1506	cd 1D
	1507	./run.sh -rad $rad
[4210]	1508	fi
	1509	#set -vx
	1510
	1511	#################################################################
	1512	# sauvegarde des options veget pour utilisation eventuelle tutorial_prod
	1513	#################################################################
	1514	cd $MODEL/modipsl/modeles
	1515	#echo surface_env file created in $MODEL
	1516	echo 'veget='$veget > surface_env
	1517	#opt_veget="-v $veget_version"
	1518	#echo 'opt_veget="'$opt_veget\" >> surface_env
	1519	echo 'opt_veget="'-v $veget_version\" >> surface_env
	1520	echo 'orchidee_rev='$orchidee_rev >> surface_env
	1521	echo 'suforch='$suff_orc >> surface_env

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