[1588] | 1 | #!/bin/bash |
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| 2 | |
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| 3 | ########################################################################### |
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[3044] | 4 | # Author : Laurent Fairhead et Frédéric Hourdin |
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| 5 | # Usage : install_lmdz.sh -help |
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[1588] | 6 | # |
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[3922] | 7 | # bash installation script of the LMDZ model on different computer types : |
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| 8 | # Linux PC, "mesocentre" (IPSL-UPMC, IPSL-X), super-computer (IDRIS) |
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| 9 | # |
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| 10 | # The model is downloaded in the following directory tree |
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[1588] | 11 | # $MODEL/modipsl/modeles/... |
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[1708] | 12 | # using the "modipsl" infrastructure created by the "IPSL" |
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| 13 | # for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling |
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| 14 | # activities. |
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| 15 | # Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE) |
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| 16 | # components. |
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[1588] | 17 | # |
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[1708] | 18 | # The sources of the models can be found in the "modeles" directory. |
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[3922] | 19 | # In the present case, LMDZ, ORCHIDEE, and IOIPSL or XIOS (handling of input-outputs |
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| 20 | # using the NetCDF library). |
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[1588] | 21 | # |
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[1708] | 22 | # The script downloads various source files (including a version of NetCDF) |
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| 23 | # and utilities, compiles the model, and runs a test simulation in a |
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[3922] | 24 | # minimal configuration. |
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[1588] | 25 | # |
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[3922] | 26 | # Prerequisites : pgf90/gfortran, bash or ksh, wget , gunzip, tar, ... |
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[1588] | 27 | # |
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[1589] | 28 | # Modif 18/11/2011 |
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[1708] | 29 | # changes for option real 8. |
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[3922] | 30 | # We compile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM |
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[1708] | 31 | # but with -r4 for netcdf. Variable real must be set to |
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| 32 | # r4 or r8 at the beginning of the script below. |
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[1589] | 33 | # |
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[1588] | 34 | ########################################################################### |
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| 35 | |
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[2030] | 36 | echo install.sh DEBUT `date` |
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[2031] | 37 | |
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[1911] | 38 | set -e |
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| 39 | |
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[3044] | 40 | ################################################################ |
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| 41 | # Choice of installation options |
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| 42 | ################################################################ |
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[1588] | 43 | |
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[3044] | 44 | # A function to fetch files either locally or on the internet |
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| 45 | function myget { #1st and only argument should be file name |
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| 46 | # Path on local computer where to look for the datafile |
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[3076] | 47 | if [ -f /u/lmdz/WWW/LMDZ/pub/$1 ] ; then |
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| 48 | \cp -f -p /u/lmdz/WWW/LMDZ/pub/$1 . |
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| 49 | elif [ -f ~/LMDZ/pub/$1 ] ; then |
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| 50 | \cp -f -p ~/LMDZ/pub/$1 . |
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[3044] | 51 | else |
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[3375] | 52 | wget -nv http://www.lmd.jussieu.fr/~lmdz/pub/$1 |
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[3076] | 53 | #dir=~/LMDZ/pub/`dirname $1` ; mkdir -p $dir ; cp -r `basename $1` $dir |
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[3044] | 54 | fi |
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| 55 | } |
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[1588] | 56 | |
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[3922] | 57 | # 04_2021 : tester si r4 marche encore ! |
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[1590] | 58 | #real=r4 |
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[1589] | 59 | real=r8 |
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| 60 | |
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[3044] | 61 | ######################################################################### |
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| 62 | # Valeur par défaut des parametres |
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| 63 | ######################################################################### |
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| 64 | svn="" |
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[3922] | 65 | #version=trunk |
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| 66 | version=20210320.trunk |
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[1588] | 67 | getlmdzor=1 |
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| 68 | netcdf=1 # 1 for automatic installation |
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| 69 | # 0 for no installation |
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| 70 | # /.../../netcdf-4.0.1 if wanting to link with an already |
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| 71 | # compiled netcdf library (implies to check option compatibility) |
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| 72 | check_linux=1 |
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| 73 | ioipsl=1 |
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| 74 | bench=1 |
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| 75 | pclinux=1 |
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[3375] | 76 | pcmac=0 # default: not on a Mac |
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[3088] | 77 | compiler=gfortran |
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[3044] | 78 | SCM=0 |
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[3922] | 79 | # surface/vegetation scheme treatment |
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| 80 | # controlled by the single variable veget which can have the following values |
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| 81 | # - NONE: bucket scheme (default) |
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| 82 | # - CMIP6: orchidee version used in CMIP exercise, rev 5661 |
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| 83 | # - number: orchidee version number (not yet implemented) |
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| 84 | veget=NONE |
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[2031] | 85 | # choose the resolution for the bench runs |
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[3044] | 86 | # grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE) |
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| 87 | # 96x71x19 standard configuration |
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| 88 | grid_resolution=144x142x79 |
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[3610] | 89 | grid_resolution=96x95x39 |
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[2409] | 90 | grid_resolution=48x36x19 |
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[3610] | 91 | grid_resolution=32x32x39 |
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[3646] | 92 | # choose the physiq version you want to test |
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| 93 | #physiq=NPv6.0.14splith |
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| 94 | physiq= |
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[1693] | 95 | |
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[3044] | 96 | ## parallel can take the values none/mpi/omp/mpi_omp |
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| 97 | parallel=mpi_omp |
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[3783] | 98 | parallel=none |
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[3573] | 99 | idris_acct=lmd |
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[3044] | 100 | OPT_GPROF="" |
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| 101 | OPT_MAKELMDZ="" |
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| 102 | MODEL="" |
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[2031] | 103 | |
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[3056] | 104 | ## also compile XIOS? (and more recent NetCDF/HDF5 libraries) Default=no |
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| 105 | with_xios="n" |
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| 106 | opt_makelmdz_xios="" |
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[3645] | 107 | |
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[3375] | 108 | ## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0) |
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| 109 | compile_with_fcm=1 |
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[3386] | 110 | cosp=0 ; opt_cosp1="" |
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| 111 | cosp=0 ; opt_cosp2="" |
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[3735] | 112 | cosp=0 ; opt_cospv2="" |
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[3386] | 113 | opt_cosp="" |
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[3056] | 114 | |
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[3375] | 115 | # Check if on a Mac |
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| 116 | if [ `uname` = "Darwin" ] |
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| 117 | then |
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| 118 | pcmac=1 |
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| 119 | export MAKE=make |
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| 120 | fi |
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| 121 | #echo "pcmac="$pcmac |
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| 122 | |
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[3645] | 123 | env_file="" |
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| 124 | |
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[3044] | 125 | ######################################################################### |
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| 126 | # Options interactives |
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| 127 | ######################################################################### |
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| 128 | while (($# > 0)) |
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| 129 | do |
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| 130 | case $1 in |
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| 131 | "-h") cat <<........fin |
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| 132 | $0 [ -v version ] [ -r svn_release ] |
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| 133 | [ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ] |
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| 134 | [-name LOCAL_MODEL_NAME] [-gprof] [-opt_makelmdz] |
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[2031] | 135 | |
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[3044] | 136 | -v "version" like 20150828.trunk |
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| 137 | see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk |
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[2404] | 138 | |
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[3044] | 139 | -r "svn_release" : either the svn release number or "last" |
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[3088] | 140 | |
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| 141 | -compiler gfortran|ifort|pgf90 (default: gfortran) |
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[2404] | 142 | |
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[3044] | 143 | -parallel PARA : can be mpi_omp (mpi with openMP) or none (for sequential) |
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[2404] | 144 | |
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[3044] | 145 | -d GRID_RESOLUTION should be among the available benchs if -bench 1 |
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| 146 | among which : 48x36x19, 48x36x39 |
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| 147 | if wanting to run a bench simulation in addition to compilation |
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| 148 | default : 48x36x19 |
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| 149 | |
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| 150 | -bench activating the bench or not (0/1). Default 1 |
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| 151 | |
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| 152 | -name LOCAL_MODEL_NAME : default = LMDZversion.release |
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| 153 | |
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[3056] | 154 | -netcdf PATH : full path to an existing installed NetCDF library |
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| 155 | (without -netcdf: also download and install the NetCDF library) |
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| 156 | |
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| 157 | -xios also download and compile the XIOS library |
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| 158 | (requires the NetCDF4-HDF5 library, also installed by default) |
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| 159 | (requires to also have -parallel mpi_omp) |
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| 160 | |
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[3044] | 161 | -gprof to compile with -pg to enable profiling with gprof |
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[3056] | 162 | |
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[3386] | 163 | -cosp to compile with cosp(v1) |
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| 164 | |
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[3735] | 165 | -cosp2 to compile with cosp(1v2) |
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[3375] | 166 | |
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[3735] | 167 | -cospv2 to compile with cosp(v2) |
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| 168 | |
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[3375] | 169 | -nofcm to compile without fcm |
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| 170 | |
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[3044] | 171 | -SCM install 1D version automatically |
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[3056] | 172 | |
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[3610] | 173 | -debug compile everything in debug mode |
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| 174 | |
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[3044] | 175 | -opt_makelmdz to call makelmdz or makelmdz_fcm with additional options |
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[3645] | 176 | |
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[3646] | 177 | -physiq to choose which physics package to use |
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| 178 | |
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[3645] | 179 | -env_file specify an arch.env file to overwrite the existing one |
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[3646] | 180 | |
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[3922] | 181 | -veget surface model to run [NONE/CMIP6/xxxx] |
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[3646] | 182 | |
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[3044] | 183 | ........fin |
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| 184 | exit ;; |
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| 185 | "-v") version=$2 ; shift ; shift ;; |
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| 186 | "-r") svn=$2 ; shift ; shift ;; |
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[3088] | 187 | "-compiler") compiler=$2 |
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| 188 | case $compiler in |
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| 189 | "gfortran"|"ifort"|"pgf90") compiler=$2 ; shift ; shift ;; |
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| 190 | *) echo "Only gfortran , ifort or pgf90 for the compiler option" ; exit |
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| 191 | esac ;; |
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[3044] | 192 | "-d") grid_resolution=$2 ; shift ; shift ;; |
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| 193 | "-gprof") OPT_GPROF="-pg" ; shift ;; |
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[3386] | 194 | "-cosp") cosp=1 ; opt_cosp1="-cosp true" ; shift ;; |
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| 195 | "-cosp2") cosp2=1 ; opt_cosp2="-cosp2 true" ; shift ;; |
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[3735] | 196 | "-cospv2") cospv2=1 ; opt_cospv2="-cospv2 true" ; shift ;; |
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[3375] | 197 | "-nofcm") compile_with_fcm=0 ; shift ;; |
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[3044] | 198 | "-SCM") SCM=1 ; shift ;; |
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| 199 | "-opt_makelmdz") OPT_MAKELMDZ="$2" ; shift ; shift ;; |
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| 200 | "-parallel") parallel=$2 |
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| 201 | case $parallel in |
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[3064] | 202 | "none"|"mpi"|"omp"|"mpi_omp") parallel=$2 ; shift ; shift ;; |
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| 203 | *) echo Only none mpi omp mpi_omp for the parallel option ; exit |
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[3044] | 204 | esac ;; |
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| 205 | "-bench") bench=$2 ; shift ; shift ;; |
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[3610] | 206 | "-debug") optim=-debug ; shift ;; |
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[3044] | 207 | "-name") MODEL=$2 ; shift ; shift ;; |
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[3056] | 208 | "-netcdf") netcdf=$2 ; shift ; shift ;; |
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[3646] | 209 | "-physiq") physiq=$2 ; shift ; shift ;; |
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[3056] | 210 | "-xios") with_xios="y" ; shift ;; |
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[3645] | 211 | "-env_file") env_file=$2 ; shift ; shift ;; |
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[3922] | 212 | "-veget") veget=$2 ; shift ; shift ;; |
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[3044] | 213 | *) ./install_lmdz.sh -h ; exit |
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| 214 | esac |
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| 215 | done |
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| 216 | |
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[3922] | 217 | # Check on veget version |
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| 218 | #if [ "$veget" != 'NONE' -a "$veget" != "CMIP6" -a "$veget" != +([0-9]) ] ; then |
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| 219 | if [ $veget != 'NONE' -a $veget != "CMIP6" ] ; then |
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| 220 | re='^[0-9]+$' |
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| 221 | if ! [[ $veget =~ $re ]] ; then |
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| 222 | echo 'Valeur de l option veget non valable' |
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| 223 | exit |
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| 224 | fi |
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| 225 | fi |
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[3044] | 226 | |
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[3922] | 227 | #Define veget-related suffix for gcm name |
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| 228 | if [ "$veget" = 'NONE' ] ; then |
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| 229 | suff_orc='' |
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| 230 | #For use with tutorial, orchidee_rev is also defined (will be written in surface_env at the end of the script) |
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| 231 | orchidee_rev='' |
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| 232 | else |
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| 233 | suff_orc='_orch' |
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| 234 | fi |
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| 235 | |
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| 236 | |
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| 237 | if [ $parallel = none ] ; then sequential=1; suff_exe='_seq' ; else sequential=0; suff_exe='_para_mem' ; fi |
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| 238 | |
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[3044] | 239 | #Chemin pour placer le modele |
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[3610] | 240 | if [ "$MODEL" = "" ] ; then MODEL=./LMDZ$version$svn$optim ; fi |
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[3044] | 241 | |
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| 242 | |
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| 243 | arch=local |
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| 244 | |
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| 245 | |
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[3088] | 246 | if [ $compiler = g95 ] ; then echo g95 is not supported anymore ; exit ; fi |
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[3044] | 247 | |
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| 248 | ################################################################ |
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| 249 | # Specificite des machines |
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| 250 | ################################################################ |
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| 251 | |
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| 252 | hostname=`hostname` |
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| 253 | if [ "$pclinux" = 1 ] ; then o_ins_make="-t g95" ; else o_ins_make="" ; fi |
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| 254 | |
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| 255 | case ${hostname:0:5} in |
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| 256 | |
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[3573] | 257 | jean-) compiler="mpiifort" ; |
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| 258 | par_comp="mpiifort" ; |
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| 259 | o_ins_make="-t jeanzay" ; |
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| 260 | make=gmake ; |
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[3610] | 261 | module purge |
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[3573] | 262 | module load intel-compilers/19.0.4 ; |
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[3645] | 263 | #module load intel-mpi/19.0.4 ; |
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| 264 | #module load intel-mkl/19.0.4 ; |
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| 265 | module load hdf5/1.10.5-mpi ; |
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| 266 | module load netcdf/4.7.2-mpi ; |
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| 267 | module load netcdf-fortran/4.5.2-mpi ; |
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| 268 | module load subversion/1.9.7 ; |
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[3573] | 269 | export NETCDF_LIBDIR=./ |
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| 270 | export NETCDFFORTRAN_INCDIR=./ |
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| 271 | export NETCDFFORTRAN_LIBDIR=./ |
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| 272 | arch=X64_JEANZAY ;; |
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| 273 | |
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[3375] | 274 | cicla|camel) compiler="gfortran" ; |
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[3056] | 275 | if [ $parallel != none ] ; then |
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[3375] | 276 | module load openmpi/1.6.5-gfortran ; |
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[3056] | 277 | root_mpi=$MPI_HOME ; |
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| 278 | path_mpi=$root_mpi/bin ; |
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| 279 | par_comp=${path_mpi}/mpif90 ; |
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| 280 | mpirun=${path_mpi}/mpirun ; |
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| 281 | fi ; |
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| 282 | arch=local ; |
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| 283 | make=make ; |
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| 284 | o_ins_make="-t g95" ;; |
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| 285 | |
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[3922] | 286 | *) if [ $parallel = none -o -f /usr/bin/mpif90 ] ; then |
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[3076] | 287 | path_mpi=`which mpif90 | sed -e s:/mpif90::` ; |
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[3056] | 288 | if [ -d /usr/lib64/openmpi ] ; then |
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| 289 | root_mpi="/usr/lib64/openmpi" |
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| 290 | else |
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| 291 | root_mpi="/usr" |
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| 292 | fi |
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[3922] | 293 | # For Scientifique Linux with gfortran at LMD : |
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| 294 | elif [ -f /usr/lib64/openmpi/1.4.5-gfortran/bin/mpif90 -a $compiler = "gfortran" ] ; then |
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| 295 | path_mpi=/usr/lib64/openmpi/1.4.5-gfortran/bin ; |
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| 296 | root_mpi=/usr/lib64/openmpi/1.4.5-gfortran ; |
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| 297 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
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| 298 | # For Scientifique Linux with ifort at LMD : |
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| 299 | elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a $compiler = "ifort" ] ; then |
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| 300 | path_mpi=/usr/lib64/openmpi/1.4.5-ifort/bin ; |
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| 301 | root_mpi=/usr/lib64/openmpi/1.4.5-ifort ; |
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| 302 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
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| 303 | # For Scientifique Linux with pgf90 at LMD : |
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| 304 | elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a $compiler = "pgf90" ] ; then |
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| 305 | path_mpi=/usr/lib64/openmpi/1.4.5-pgf/bin ; |
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| 306 | root_mpi=/usr/lib64/openmpi/1.4.5-pgf ; |
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| 307 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
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[3044] | 308 | else |
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[3922] | 309 | echo "Cannot find mpif90" ; |
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| 310 | if [ $parallel = none ] ; then exit ; fi ; |
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[3044] | 311 | fi ; |
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[3056] | 312 | par_comp=${path_mpi}/mpif90 ; |
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| 313 | mpirun=${path_mpi}/mpirun ; |
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[3044] | 314 | arch=local ; |
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| 315 | make=make ; |
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| 316 | o_ins_make="-t g95" |
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| 317 | esac |
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| 318 | |
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[3088] | 319 | # Flags for parallelism: |
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| 320 | if [ $parallel != none ] ; then |
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| 321 | # MPI_LD are the flags needed for linking with MPI |
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| 322 | MPI_LD="-L${root_mpi}/lib -lmpi" |
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| 323 | if [ "$compiler" = "gfortran" ] ; then |
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| 324 | # MPI_FLAGS are the flags needed for compilation with MPI |
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| 325 | MPI_FLAGS="-fcray-pointer" |
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| 326 | # OMP_FLAGS are the flags needed for compilation with OpenMP |
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| 327 | OMP_FLAGS="-fopenmp -fcray-pointer" |
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| 328 | # OMP_LD are the flags needed for linking with OpenMP |
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| 329 | OMP_LD="-fopenmp" |
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| 330 | elif [ "$compiler" = "ifort" ] ; then |
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| 331 | MPI_FLAGS="" |
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| 332 | OMP_FLAGS="-openmp" |
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| 333 | OMP_LD="-openmp" |
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| 334 | else # pgf90 |
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| 335 | MPI_FLAGS="" |
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| 336 | OMP_FLAGS="-mp" |
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| 337 | OMP_LD="-mp" |
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| 338 | fi |
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| 339 | fi |
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[3044] | 340 | |
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[1693] | 341 | ##################################################################### |
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| 342 | # Test for old gfortran compilers |
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[2030] | 343 | # If the compiler is too old (older than 4.3.x) we test if the |
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| 344 | # temporary gfortran44 patch is available on the computer in which |
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| 345 | # case the compiler is changed from gfortran to gfortran44 |
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| 346 | # Must be aware than parallelism can not be activated in this case |
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| 347 | ##################################################################### |
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| 348 | |
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[3088] | 349 | if [ "$compiler" = "gfortran" ] ; then |
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[2030] | 350 | gfortran=gfortran |
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[1693] | 351 | gfortranv=`gfortran --version | \ |
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| 352 | head -1 | awk ' { print $NF } ' | awk -F. ' { print $1 * 10 + $2 } '` |
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| 353 | if [ $gfortranv -le 43 ] ; then |
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[1708] | 354 | echo ERROR : Your gfortran compiler is too old |
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[3044] | 355 | echo 'Please choose a new one (ifort) and change the line' |
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[3088] | 356 | echo compiler=xxx |
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[1693] | 357 | echo in the install.sh script and rerun it |
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[2030] | 358 | if [ `which gfortran44 | wc -w` -ne 0 ] ; then |
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| 359 | gfortran=gfortran44 |
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| 360 | else |
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| 361 | echo gfotran trop vieux ; exit |
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| 362 | fi |
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[1693] | 363 | fi |
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[3088] | 364 | compiler=$gfortran |
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[1693] | 365 | fi |
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| 366 | ##################################################################### |
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| 367 | |
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[3056] | 368 | ## if also compiling XIOS, parallel must be mpi_omp |
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| 369 | if [ "$with_xios" = "y" -a "$parallel" != "mpi_omp" ] ; then |
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| 370 | echo "Error, you must set -parallel mpi_omp if you want XIOS" |
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| 371 | exit |
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| 372 | fi |
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[3386] | 373 | |
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| 374 | ## We can't compile with -cosp and -cosp2 |
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| 375 | if [ "$cosp" = 1 -a "$cosp2" = 1 ] ; then |
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| 376 | echo "Error, you can't run with cosp1 and cosp2" |
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| 377 | exit |
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| 378 | fi |
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| 379 | if [ "$cosp" = 1 ] ; then |
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| 380 | opt_cosp="$opt_cosp1" |
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| 381 | fi |
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| 382 | if [ "$cosp2" = 1 ] ; then |
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| 383 | opt_cosp="$opt_cosp2" |
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| 384 | fi |
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[3735] | 385 | if [ "$cospv2" = 1 ] ; then |
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| 386 | opt_cosp="$opt_cospv2" |
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| 387 | fi |
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[3386] | 388 | |
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| 389 | ## if also compiling XIOS, cosp must be activate to define axis in *.xml |
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[3417] | 390 | if [ "$with_xios" = "y" ] ; then |
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[3735] | 391 | if [ "$cosp" = 0 -a "$cosp2" = 0 -a "$cospv2" = 0 ] ; then |
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[3386] | 392 | echo "Error, you must use -cosp option when compiling with -xios" |
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| 393 | echo "You need to call Cosp in physical first step to define axis variables" |
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| 394 | exit |
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[3417] | 395 | fi |
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[3056] | 396 | opt_makelmdz_xios="-io xios" |
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| 397 | fi |
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[1693] | 398 | |
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[3735] | 399 | if [ "$cospv2" = 1 -a "$with_xios" = "n" ] ; then |
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| 400 | echo "Error, Cospv2 cannot run without Xios" |
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| 401 | exit |
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| 402 | fi |
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| 403 | |
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[1588] | 404 | echo '################################################################' |
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| 405 | echo Choix des options de compilation |
---|
| 406 | echo '################################################################' |
---|
[1589] | 407 | |
---|
[3088] | 408 | export FC=$compiler |
---|
| 409 | export F90=$compiler |
---|
| 410 | export F77=$compiler |
---|
[2031] | 411 | export CPPFLAGS= |
---|
[3044] | 412 | OPTIMNC=$OPTIM |
---|
| 413 | BASE_LD="$OPT_GPROF" |
---|
| 414 | OPTPREC="$OPT_GPROF" |
---|
[3076] | 415 | ARFLAGS="rs" ; if [ -f /etc/issue ] ; then if [ "`grep -i ubuntu /etc/issue`" != "" ] ; then if [ "`grep -i ubuntu /etc/issue | awk ' { print $2 } ' | cut -d. -f1`" -ge 16 ] ; then ARFLAGS="rU" ; fi ; fi ; fi |
---|
[3044] | 416 | |
---|
[3076] | 417 | |
---|
| 418 | |
---|
[3088] | 419 | if [ "$compiler" = "$gfortran" ] ; then |
---|
[2031] | 420 | OPTIM='-O3' |
---|
[3044] | 421 | OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -fbacktrace -finit-real=nan" |
---|
[2031] | 422 | OPTDEV="-Wall -fbounds-check" |
---|
| 423 | fmod='I ' |
---|
[3044] | 424 | OPTPREC="$OPTPREC -cpp -ffree-line-length-0" |
---|
[2409] | 425 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE" ; fi |
---|
[2031] | 426 | export F90FLAGS=" -ffree-form $OPTIMNC" |
---|
| 427 | export FFLAGS=" $OPTIMNC" |
---|
| 428 | export CC=gcc |
---|
| 429 | export CXX=g++ |
---|
[3044] | 430 | export fpp_flags="-P -C -traditional -ffreestanding" |
---|
| 431 | |
---|
[3088] | 432 | elif [ $compiler = mpif90 ] ; then |
---|
[1589] | 433 | OPTIM='-O3' |
---|
[3044] | 434 | OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all" |
---|
[2031] | 435 | OPTDEV="-Wall -fbounds-check" |
---|
[3044] | 436 | BASE_LD="$BASE_LD -lblas" |
---|
[2031] | 437 | fmod='I ' |
---|
[3044] | 438 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE -fcray-pointer" ; fi |
---|
[2031] | 439 | export F90FLAGS=" -ffree-form $OPTIMNC" |
---|
| 440 | export FFLAGS=" $OPTIMNC" |
---|
| 441 | export CC=gcc |
---|
| 442 | export CXX=g++ |
---|
[3044] | 443 | |
---|
[3088] | 444 | elif [ $compiler = pgf90 ] ; then |
---|
[2203] | 445 | OPTIM='-O2 -Mipa -Munroll -Mnoframe -Mautoinline -Mcache_align' |
---|
| 446 | OPTDEB='-g -Mdclchk -Mbounds -Mchkfpstk -Mchkptr -Minform=inform -Mstandard -Ktrap=fp -traceback' |
---|
| 447 | OPTDEV='-g -Mbounds -Ktrap=fp -traceback' |
---|
[2031] | 448 | fmod='module ' |
---|
[3044] | 449 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -r8 -DNC_DOUBLE" ; fi |
---|
[2203] | 450 | export CPPFLAGS="-DpgiFortran" |
---|
[2031] | 451 | export CC=pgcc |
---|
[2203] | 452 | export CFLAGS="-O2 -Msignextend" |
---|
[2031] | 453 | export CXX=pgCC |
---|
[2203] | 454 | export CXXFLAGS="-O2 -Msignextend" |
---|
| 455 | export FFLAGS="-O2 $OPTIMNC" |
---|
| 456 | export F90FLAGS="-O2 $OPTIMNC" |
---|
[1590] | 457 | compile_with_fcm=1 |
---|
[3044] | 458 | |
---|
[3088] | 459 | elif [ $compiler = ifort ] ; then |
---|
[2031] | 460 | OPTIM="-O2 -fp-model strict -ip -align all " |
---|
| 461 | OPTDEV="-p -g -O2 -traceback -fp-stack-check -ftrapuv -check" |
---|
| 462 | OPTDEB="-g -no-ftz -traceback -ftrapuv -fp-stack-check -check" |
---|
| 463 | fmod='module ' |
---|
[3044] | 464 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi |
---|
[2031] | 465 | export CPP="icc -E" |
---|
| 466 | export FFLAGS="-O2 -ip -fpic -mcmodel=large" |
---|
| 467 | export FCFLAGS="-O2 -ip -fpic -mcmodel=large" |
---|
| 468 | export CC=icc |
---|
| 469 | export CFLAGS="-O2 -ip -fpic -mcmodel=large" |
---|
| 470 | export CXX=icpc |
---|
| 471 | export CXXFLAGS="-O2 -ip -fpic -mcmodel=large" |
---|
[3375] | 472 | export fpp_flags="-P -traditional" |
---|
[3610] | 473 | # Pourquoi forcer la compilation fcm. Marche mieux sans |
---|
| 474 | #compile_with_fcm=1 |
---|
[3044] | 475 | |
---|
[3573] | 476 | elif [ $compiler = mpiifort ] ; then |
---|
[3610] | 477 | echo on ne fait rien la |
---|
| 478 | # Pourquoi forcer la compilation fcm. Marche mieux sans |
---|
| 479 | #compile_with_fcm=1 |
---|
[3573] | 480 | |
---|
[2031] | 481 | else |
---|
[3088] | 482 | echo unexpected compiler $compiler ; exit |
---|
[1588] | 483 | fi |
---|
[2031] | 484 | |
---|
[1589] | 485 | OPTIMGCM="$OPTIM $OPTPREC" |
---|
[1588] | 486 | |
---|
| 487 | hostname=`hostname` |
---|
| 488 | |
---|
| 489 | ########################################################################## |
---|
[3922] | 490 | # If installing on known machines such as Jean-Zay at IDRIS, |
---|
| 491 | # don't check for available software and don't install netcdf |
---|
[3573] | 492 | if [ ${hostname:0:5} = jean- ] ; then |
---|
| 493 | netcdf=0 # no need to recompile netcdf, alreday available |
---|
| 494 | check_linux=0 |
---|
| 495 | pclinux=0 |
---|
| 496 | ioipsl=0 # no need to recompile ioipsl, already available |
---|
| 497 | #netcdf="/smplocal/pub/NetCDF/4.1.3" |
---|
| 498 | compiler="mpiifort" |
---|
| 499 | fmod='module ' |
---|
| 500 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -i4 -r8 -DNC_DOUBLE" ; fi |
---|
| 501 | OPTIM="-auto -align all -O2 -fp-model strict -xHost " |
---|
| 502 | OPTIMGCM="$OPTIM $OPTPREC" |
---|
| 503 | fi |
---|
[1588] | 504 | ########################################################################## |
---|
| 505 | |
---|
| 506 | |
---|
| 507 | mkdir -p $MODEL |
---|
| 508 | echo $MODEL |
---|
[1708] | 509 | MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary |
---|
[1588] | 510 | |
---|
| 511 | |
---|
| 512 | echo '################################################################' |
---|
| 513 | if [ "$check_linux" = 1 ] ; then |
---|
[1708] | 514 | echo Check if required software is available |
---|
[1588] | 515 | echo '################################################################' |
---|
| 516 | |
---|
[3922] | 517 | #### Ehouarn: test if the required shell is available |
---|
| 518 | #### Maj FH-LF-AS 2021-04 : default=bash ; if bash missing, use ksh |
---|
| 519 | use_shell="bash" # default |
---|
| 520 | if [ "`which bash`" = "" ] ; then |
---|
| 521 | echo "no bash ; we will use ksh" |
---|
| 522 | use_shell="ksh" |
---|
| 523 | if [ "`which ksh`" = "" ] ; then |
---|
| 524 | echo "bash (or ksh) needed!! Install it!" |
---|
| 525 | exit |
---|
[1588] | 526 | fi |
---|
[3922] | 527 | fi |
---|
[1588] | 528 | |
---|
[3610] | 529 | for logiciel in wget tar gzip make $compiler gcc ; do |
---|
[1588] | 530 | if [ "`which $logiciel`" = "" ] ; then |
---|
[1708] | 531 | echo You must first install $logiciel on your system |
---|
[1588] | 532 | exit |
---|
| 533 | fi |
---|
| 534 | done |
---|
| 535 | |
---|
| 536 | if [ $pclinux = 1 ] ; then |
---|
| 537 | cd $MODEL |
---|
[2030] | 538 | cat <<eod > tt.f90 |
---|
[1588] | 539 | print*,'coucou' |
---|
| 540 | end |
---|
| 541 | eod |
---|
[3088] | 542 | $compiler tt.f90 -o a.out |
---|
[1588] | 543 | ./a.out >| tt |
---|
| 544 | if [ "`cat tt | sed -e 's/ //g' `" != "coucou" ] ; then |
---|
[3088] | 545 | echo problem installing with compiler $compiler ; exit ; fi |
---|
[1588] | 546 | \rm tt a.out tt.f90 |
---|
| 547 | fi |
---|
| 548 | fi |
---|
| 549 | |
---|
| 550 | ########################################################################### |
---|
| 551 | if [ $getlmdzor = 1 ] ; then |
---|
| 552 | echo '##########################################################' |
---|
[1708] | 553 | echo Download a slightly modified version of LMDZ |
---|
[1588] | 554 | echo '##########################################################' |
---|
| 555 | cd $MODEL |
---|
[3922] | 556 | myget src/modipsl_orc_cmip6.$version.tar.gz |
---|
[3044] | 557 | echo install.sh wget_OK `date` |
---|
[3922] | 558 | gunzip modipsl_orc_cmip6.$version.tar.gz |
---|
| 559 | tar xvf modipsl_orc_cmip6.$version.tar |
---|
| 560 | \rm modipsl_orc_cmip6.$version.tar |
---|
[1588] | 561 | fi |
---|
| 562 | |
---|
| 563 | echo OK1 |
---|
| 564 | |
---|
| 565 | if [ $netcdf = 1 ] ; then |
---|
[3091] | 566 | cd $MODEL |
---|
| 567 | netcdflog=`pwd`/netcdf.log |
---|
[1588] | 568 | echo '##########################################################' |
---|
[1708] | 569 | echo Compiling the Netcdf library |
---|
[1588] | 570 | echo '##########################################################' |
---|
[3091] | 571 | echo log file : $netcdflog |
---|
[3056] | 572 | if [ "$with_xios" = "n" ] ; then |
---|
| 573 | # keep it simple |
---|
| 574 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/netcdf-4.0.1.tar.gz |
---|
[3076] | 575 | myget import/netcdf-4.0.1.tar.gz |
---|
[3056] | 576 | gunzip netcdf-4.0.1.tar.gz |
---|
| 577 | tar xvf netcdf-4.0.1.tar |
---|
| 578 | \rm -f netcdf-4.0.1.tar |
---|
[1588] | 579 | |
---|
[3056] | 580 | cd netcdf-4.0.1 |
---|
[1588] | 581 | |
---|
[3056] | 582 | localdir=`pwd -P` |
---|
| 583 | ./configure --prefix=$localdir --enable-shared --disable-cxx |
---|
| 584 | #sed -e 's/gfortran/'$gfortran'/g' Makefile >| tmp ; mv -f tmp Makefile |
---|
[3091] | 585 | $make check > $netcdflog 2>&1 |
---|
| 586 | $make install >> $netcdflog 2>&1 |
---|
[3921] | 587 | #LF rajout d'une verrue, pour une raison non encore expliquee, la librairie est parfois rangée dans lib64 |
---|
| 588 | # et non dans lib par certains compilateurs |
---|
| 589 | if [ ! -e lib -a -d lib64 ] ; then ln -s lib64 lib; fi |
---|
[3056] | 590 | else |
---|
| 591 | # download and compile hdf5 and netcdf, etc. using the install_netcdf4_hdf5.bash script |
---|
| 592 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_netcdf4_hdf5.bash |
---|
[3076] | 593 | myget import/install_netcdf4_hdf5.bash |
---|
[3056] | 594 | chmod u=rwx install_netcdf4_hdf5.bash |
---|
[3088] | 595 | if [ "$compiler" = "gfortran" ] ; then |
---|
[3560] | 596 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC gcc -FC gfortran -CXX g++ -MPI $root_mpi > $netcdflog 2>&1 |
---|
[3088] | 597 | elif [ "$compiler" = "ifort" ] ; then |
---|
[3560] | 598 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC icc -FC ifort -CXX icpc -MPI $root_mpi > $netcdflog 2>&1 |
---|
[3088] | 599 | elif [ "$compiler" = "pgf90" ] ; then |
---|
[3560] | 600 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC pgcc -FC pgf90 -CXX pgCC -MPI $root_mpi > $netcdflog 2>&1 |
---|
[3056] | 601 | else |
---|
[3088] | 602 | echo "unexpected compiler $compiler" ; exit |
---|
[3056] | 603 | fi |
---|
| 604 | fi # of if [ "$with_xios" = "n" ] |
---|
[2030] | 605 | echo install.sh netcdf_OK `date` |
---|
[1731] | 606 | fi # of if [ $netcdf = 1 ] |
---|
[1588] | 607 | |
---|
[3783] | 608 | #====================================================================================== |
---|
[1588] | 609 | echo OK2 ioipsl=$ioipsl |
---|
| 610 | echo '##########################################################' |
---|
[1731] | 611 | echo 'Installing MODIPSL, the installation package manager for the ' |
---|
| 612 | echo 'IPSL models and tools' |
---|
[1588] | 613 | echo '##########################################################' |
---|
| 614 | |
---|
| 615 | if [ $netcdf = 0 -o $netcdf = 1 ] ; then |
---|
[3056] | 616 | if [ "$with_xios" = "y" ] ; then |
---|
| 617 | ncdfdir=$MODEL/netcdf4_hdf5 |
---|
| 618 | else |
---|
| 619 | ncdfdir=$MODEL/netcdf-4.0.1 |
---|
| 620 | fi |
---|
[1588] | 621 | else |
---|
[3056] | 622 | ncdfdir=$netcdf |
---|
[1588] | 623 | fi |
---|
| 624 | |
---|
| 625 | if [ $ioipsl = 1 ] ; then |
---|
[1731] | 626 | cd $MODEL/modipsl |
---|
[2030] | 627 | \rm -rf lib/* |
---|
[2031] | 628 | |
---|
[1731] | 629 | cd util |
---|
[1588] | 630 | |
---|
[1731] | 631 | cp AA_make.gdef AA_make.orig |
---|
[3088] | 632 | F_C="$compiler -c " ; if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then F_C="$compiler -c -cpp " ; fi |
---|
| 633 | if [ "$compiler" = "pgf90" ] ; then F_C="$compiler -c -Mpreprocess" ; fi |
---|
[1731] | 634 | sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp |
---|
[3088] | 635 | sed -e "s:F_L = g95:F_L = $compiler:" -e "s:F_C = g95 -c -cpp:F_C = $F_C": \ |
---|
[1731] | 636 | -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ |
---|
| 637 | -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= '"$ncdfdir"'/include:' \ |
---|
[3044] | 638 | -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdff -lnetcdf:' \ |
---|
[3063] | 639 | -e 's:g95 L_O =:g95 L_O = -Wl,-rpath='"$ncdfdir"'/lib:' \ |
---|
[1731] | 640 | -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ |
---|
| 641 | -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ |
---|
| 642 | tmp >| AA_make.gdef |
---|
[1588] | 643 | |
---|
[3375] | 644 | if [ $pcmac == 1 ] |
---|
| 645 | then |
---|
| 646 | cp AA_make.gdef tmp |
---|
| 647 | sed -e 's/rpath=/rpath,/g' tmp > AA_make.gdef |
---|
| 648 | fi |
---|
| 649 | |
---|
[1588] | 650 | |
---|
[3044] | 651 | # We use lines for g95 even for the other compilers to run ins_make |
---|
[1731] | 652 | if [ "$use_shell" = "ksh" ] ; then |
---|
[3044] | 653 | ./ins_make $o_ins_make |
---|
[1731] | 654 | else # bash |
---|
| 655 | sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash |
---|
[3645] | 656 | #if [ "`grep ada AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar |
---|
| 657 | # \cp -f ~rdzt401/bin/AA_make.gdef . |
---|
| 658 | #fi |
---|
[3573] | 659 | if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar |
---|
| 660 | echo 'Warning jean-zay not in AA_make.gdef' |
---|
| 661 | echo 'Think about updating' |
---|
| 662 | exit 1 |
---|
| 663 | fi |
---|
[3375] | 664 | |
---|
[1731] | 665 | chmod u=rwx ins_make.bash |
---|
[3044] | 666 | ./ins_make.bash $o_ins_make |
---|
[1731] | 667 | fi # of if [ "$use_shell" = "ksh" ] |
---|
| 668 | |
---|
[2031] | 669 | #======================================================================================= |
---|
[3091] | 670 | cd $MODEL/modipsl/modeles/IOIPSL/src |
---|
[3092] | 671 | ioipsllog=`pwd`/ioipsl.log |
---|
[1731] | 672 | echo '##########################################################' |
---|
| 673 | echo 'Compiling IOIPSL, the interface library with Netcdf' |
---|
| 674 | echo '##########################################################' |
---|
[3091] | 675 | echo log file : $ioipsllog |
---|
[1731] | 676 | |
---|
| 677 | if [ "$use_shell" = "bash" ] ; then |
---|
| 678 | cp Makefile Makefile.ksh |
---|
| 679 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
---|
[1588] | 680 | fi |
---|
[3044] | 681 | # if [ "$pclinux" = 1 ] ; then |
---|
[1731] | 682 | # Build IOIPSL modules and library |
---|
[3044] | 683 | $make clean |
---|
[3091] | 684 | $make > $ioipsllog 2>&1 |
---|
[3088] | 685 | if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then # copy module files to lib |
---|
[1731] | 686 | cp -f *.mod ../../../lib |
---|
| 687 | fi |
---|
| 688 | # Build IOIPSL tools (ie: "rebuild", if present) |
---|
| 689 | if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then |
---|
| 690 | cd $MODEL/modipsl/modeles/IOIPSL/tools |
---|
| 691 | # adapt Makefile & rebuild script if in bash |
---|
| 692 | if [ "$use_shell" = "bash" ] ; then |
---|
| 693 | cp Makefile Makefile.ksh |
---|
| 694 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
---|
| 695 | cp rebuild rebuild.ksh |
---|
| 696 | sed -e 's:/bin/ksh:/bin/bash:g' \ |
---|
| 697 | -e 's:print -u2:echo:g' \ |
---|
| 698 | -e 's:print:echo:g' rebuild.ksh > rebuild |
---|
| 699 | fi |
---|
[3044] | 700 | $make clean |
---|
[3091] | 701 | $make > $ioipsllog 2>&1 |
---|
[1731] | 702 | fi |
---|
[3044] | 703 | # fi # of if [ "$pclinux" = 1 ] |
---|
[1588] | 704 | |
---|
[1731] | 705 | else # of if [ $ioipsl = 1 ] |
---|
[3645] | 706 | if [ ${hostname:0:5} = jean- ] ; then |
---|
[3573] | 707 | cd $MODEL/modipsl |
---|
| 708 | cd util |
---|
[3645] | 709 | if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then |
---|
[3573] | 710 | echo 'Warning jean-zay not in AA_make.gdef' |
---|
| 711 | echo 'Think about updating' |
---|
| 712 | exit 1 |
---|
| 713 | fi |
---|
| 714 | ./ins_make $o_ins_make |
---|
| 715 | # Compile IOIPSL on jean-zay |
---|
| 716 | cd $MODEL/modipsl/modeles/IOIPSL/src |
---|
[3610] | 717 | gmake > ioipsl.log |
---|
| 718 | cd $MODEL/modipsl/modeles/IOIPSL/tools |
---|
| 719 | gmake > ioipsl.log |
---|
[3573] | 720 | |
---|
[3645] | 721 | fi |
---|
[2030] | 722 | echo install.sh ioipsl_OK `date` |
---|
[1731] | 723 | fi # of if [ $ioipsl = 1 ] |
---|
[3044] | 724 | # Saving ioipsl lib for possible parallel compile |
---|
| 725 | cd $MODEL/modipsl |
---|
| 726 | tar cf ioipsl.tar lib/ bin/ |
---|
[1731] | 727 | |
---|
[3056] | 728 | #=========================================================================== |
---|
| 729 | if [ "$with_xios" = "y" ] ; then |
---|
| 730 | echo '##########################################################' |
---|
| 731 | echo 'Compiling XIOS' |
---|
| 732 | echo '##########################################################' |
---|
| 733 | cd $MODEL/modipsl/modeles |
---|
[3375] | 734 | xioslog=`pwd`/xios.log |
---|
| 735 | echo "log file: $xioslog" |
---|
[3056] | 736 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash |
---|
[3076] | 737 | myget import/install_xios.bash |
---|
[3056] | 738 | chmod u=rwx install_xios.bash |
---|
[3645] | 739 | if [ ${hostname:0:5} = jean- ] ; then |
---|
[3736] | 740 | # echo 'Need to work on install_xios implementation for jean-zay' |
---|
| 741 | # exit |
---|
| 742 | svn co http://forge.ipsl.jussieu.fr/ioserver/svn/XIOS/branchs/xios-2.5 XIOS |
---|
| 743 | cd XIOS/arch |
---|
| 744 | svn update |
---|
| 745 | cd .. |
---|
| 746 | ./make_xios --prod --arch $arch --job 4 > xios.log 2>&1 |
---|
[3375] | 747 | else |
---|
| 748 | ./install_xios.bash -prefix $MODEL/modipsl/modeles \ |
---|
[3056] | 749 | -netcdf ${ncdfdir} -hdf5 ${ncdfdir} \ |
---|
[3375] | 750 | -MPI $root_mpi -arch $arch > xios.log 2>&1 |
---|
| 751 | fi |
---|
| 752 | if [ -f XIOS/lib/libxios.a ] ; then |
---|
| 753 | echo "OK, XIOS library successfully generated" |
---|
| 754 | fi |
---|
[3056] | 755 | fi |
---|
| 756 | |
---|
[1800] | 757 | #============================================================================ |
---|
[1837] | 758 | veget_version=false |
---|
[3922] | 759 | if [ "$veget" != 'NONE' ] ; then |
---|
[3091] | 760 | cd $MODEL/modipsl/modeles/ORCHIDEE |
---|
[3922] | 761 | set +e ; svn upgrade ; set -e |
---|
| 762 | if [ "$veget" = "CMIP6" ] ; then |
---|
| 763 | veget_version=orchidee2.0 |
---|
| 764 | orchidee_rev=6592 |
---|
| 765 | else # specific orchidee revision |
---|
| 766 | set +e |
---|
| 767 | svn log -r $veget | grep $veget |
---|
| 768 | if [ $? -gt 0 ] ; then |
---|
| 769 | echo 'Cannot update ORCHIDEE as not on the right branch for ORCHIDEE' |
---|
| 770 | exit |
---|
| 771 | fi |
---|
| 772 | set -e |
---|
| 773 | set +e ; svn update -r $veget ; set -e |
---|
[3646] | 774 | fi |
---|
[3610] | 775 | # Correctif suite debug Jean-Zay |
---|
| 776 | sed -i -e 's/9010 FORMAT(A52,F17.14)/9010 FORMAT(A52,F20.14)/' src_stomate/stomate.f90 |
---|
| 777 | opt_orc="-prod" ; if [ "$optim" = "-debug" ] ; then opt_orc="-debug" ; fi |
---|
| 778 | |
---|
[3091] | 779 | orchideelog=`pwd`/orchidee.log |
---|
[1731] | 780 | echo '########################################################' |
---|
| 781 | echo 'Compiling ORCHIDEE, the continental surfaces model ' |
---|
| 782 | echo '########################################################' |
---|
[3091] | 783 | echo log file : $orchideelog |
---|
[2430] | 784 | export ORCHPATH=`pwd` |
---|
| 785 | if [ -d tools ] ; then |
---|
[3386] | 786 | ################################################################### |
---|
| 787 | # Pour les experts qui voudraient changer de version d'orchidee. |
---|
| 788 | # Attention : necessite d'avoir le password pour orchidee |
---|
[3922] | 789 | |
---|
[3610] | 790 | # Correctif suite debug Jean-Zay |
---|
| 791 | if [ -f src_global/time.f90 ] ; then sed -i -e 's/CALL tlen2itau/\!CALL tlen2itau/' src_global/time.f90 ; fi |
---|
[3386] | 792 | ################################################################### |
---|
[3646] | 793 | if [ "$veget_version" == "false" ] ; then veget_version=orchidee2.0 ; fi |
---|
[3044] | 794 | cd arch |
---|
[3088] | 795 | sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \ |
---|
| 796 | -e s:"%LINK .*.$":"%LINK $compiler":1 \ |
---|
[2430] | 797 | -e s:"%FPP_FLAGS .*.$":"%FPP_FLAGS $fpp_flags":1 \ |
---|
| 798 | -e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \ |
---|
| 799 | -e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \ |
---|
| 800 | -e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \ |
---|
[3044] | 801 | -e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \ |
---|
| 802 | -e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \ |
---|
[3076] | 803 | -e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \ |
---|
[2430] | 804 | arch-gfortran.fcm > arch-local.fcm |
---|
[3044] | 805 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path |
---|
[2430] | 806 | echo "NETCDF_INCDIR=${ncdfdir}/include" >> arch-local.path |
---|
| 807 | echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path |
---|
| 808 | echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path |
---|
[3375] | 809 | echo 'XIOS_INCDIR=${ORCHDIR}/../XIOS/inc' >> arch-local.path |
---|
| 810 | echo 'XIOS_LIBDIR="${ORCHDIR}/../XIOS/lib -lxios"' >> arch-local.path |
---|
[3044] | 811 | cd ../ |
---|
[2430] | 812 | # compiling ORCHIDEE sequential mode |
---|
[3610] | 813 | ./makeorchidee_fcm -j 8 -noxios $opt_orc -parallel none -arch $arch > $orchideelog 2>&1 |
---|
| 814 | echo ./makeorchidee_fcm -j 8 -noxios $opt_orc -parallel none -arch $arch |
---|
[3417] | 815 | echo End of the first compilation of orchidee ; pwd |
---|
[1800] | 816 | else |
---|
[2430] | 817 | if [ -d src_parallel ] ; then |
---|
| 818 | liste_src="parallel parameters global stomate sechiba driver" |
---|
[3646] | 819 | if [ "$veget_version" == "false" ] ; then veget_version=orchidee2.0 ; fi |
---|
[2430] | 820 | fi |
---|
| 821 | for d in $liste_src ; do src_d=src_$d |
---|
| 822 | echo src_d $src_d |
---|
| 823 | echo ls ; ls |
---|
| 824 | if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi |
---|
[3044] | 825 | cd $src_d ; \rm -f *.mod make ; $make clean |
---|
[3091] | 826 | $make > $orchideelog 2>&1 ; if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then cp -f *.mod ../../../lib ; fi |
---|
[2430] | 827 | cd .. |
---|
| 828 | done |
---|
[1800] | 829 | fi |
---|
[2030] | 830 | echo install.sh orchidee_OK `date` |
---|
[1731] | 831 | fi # of if [ "$veget" = 1 ] |
---|
[1588] | 832 | |
---|
[2030] | 833 | |
---|
[1800] | 834 | #============================================================================ |
---|
[3922] | 835 | # Ehouarn: the directory name LMDZ* depends on version/tar file... |
---|
[3044] | 836 | if [ -d $MODEL/modipsl/modeles/LMD* ] ; then |
---|
[1588] | 837 | echo '##########################################################' |
---|
[1800] | 838 | echo 'Compiling LMDZ' |
---|
[1588] | 839 | echo '##########################################################' |
---|
[3044] | 840 | cd $MODEL/modipsl/modeles/LMD* |
---|
| 841 | LMDZPATH=`pwd` |
---|
[1588] | 842 | else |
---|
[3044] | 843 | echo "ERROR: No LMD* directory !!!" |
---|
[1800] | 844 | exit |
---|
[1588] | 845 | fi |
---|
| 846 | |
---|
| 847 | ########################################################### |
---|
[1708] | 848 | # For those who want to use fcm to compile via : |
---|
[1588] | 849 | # makelmdz_fcm -arch local ..... |
---|
| 850 | ############################################################ |
---|
| 851 | |
---|
[2031] | 852 | if [ "$pclinux" = "1" ] ; then |
---|
| 853 | |
---|
[1708] | 854 | # create local 'arch' files (if on Linux PC): |
---|
[1588] | 855 | cd arch |
---|
[1708] | 856 | # arch-local.path file |
---|
[3044] | 857 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path |
---|
[1590] | 858 | echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path |
---|
[1588] | 859 | echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
| 860 | echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
[3044] | 861 | echo 'XIOS_INCDIR=$LMDGCM/../XIOS/inc' >> arch-local.path |
---|
| 862 | echo 'XIOS_LIBDIR=$LMDGCM/../XIOS/lib' >> arch-local.path |
---|
[1588] | 863 | echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
| 864 | echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
[3044] | 865 | |
---|
[3375] | 866 | if [ $pcmac == 1 ] ; then |
---|
| 867 | BASE_LD="$BASE_LD -Wl,-rpath,${ncdfdir}/lib" |
---|
| 868 | else |
---|
| 869 | BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib" |
---|
| 870 | fi |
---|
| 871 | # Arch-local.fcm file (adapted from arch-linux-32bit.fcm) |
---|
[2031] | 872 | |
---|
| 873 | if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi |
---|
[3088] | 874 | sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \ |
---|
| 875 | -e s:"%LINK .*.$":"%LINK $compiler":1 \ |
---|
[2031] | 876 | -e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \ |
---|
| 877 | -e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \ |
---|
| 878 | -e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \ |
---|
| 879 | -e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \ |
---|
[2203] | 880 | -e s:"%FPP_DEF .*.$":"%FPP_DEF $FPP_DEF":1 \ |
---|
[3044] | 881 | -e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \ |
---|
[3076] | 882 | -e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \ |
---|
[2031] | 883 | arch-linux-32bit.fcm > arch-local.fcm |
---|
| 884 | |
---|
[1588] | 885 | cd .. |
---|
[1708] | 886 | ### Adapt "bld.cfg" (add the shell): |
---|
[1588] | 887 | whereisthatshell=$(which ${use_shell}) |
---|
| 888 | echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg |
---|
| 889 | |
---|
[1731] | 890 | fi # of if [ "$pclinux" = 1 ] |
---|
| 891 | |
---|
| 892 | |
---|
[3056] | 893 | cd $MODEL/modipsl/modeles/LMDZ* |
---|
[3093] | 894 | lmdzlog=`pwd`/lmdz.log |
---|
[1731] | 895 | |
---|
[1588] | 896 | ################################################################## |
---|
[3056] | 897 | # Possibly update LMDZ if a specific svn release is requested |
---|
[3044] | 898 | ################################################################## |
---|
| 899 | |
---|
[3922] | 900 | |
---|
| 901 | set +e ; svn upgrade ; set -e |
---|
[3044] | 902 | if [ "$svn" = "last" ] ; then svnopt="" ; else svnopt="-r $svn" ; fi |
---|
[3783] | 903 | if [ "$svn" != "" ] ; then |
---|
| 904 | svn info | grep -q 'http:' |
---|
| 905 | if [ $? = 0 ] ; then |
---|
| 906 | svn switch --relocate http://svn.lmd.jussieu.fr/LMDZ https://svn.lmd.jussieu.fr/LMDZ |
---|
| 907 | fi |
---|
| 908 | svn update $svnopt |
---|
| 909 | fi |
---|
| 910 | set -e |
---|
[3044] | 911 | |
---|
[3091] | 912 | echo '##################################################################' |
---|
| 913 | echo Compile LMDZ |
---|
| 914 | echo '##################################################################' |
---|
| 915 | echo log file : $lmdzlog |
---|
[3044] | 916 | |
---|
[3645] | 917 | if [ "$env_file" != "" ] ; then mv arch/arch-${arch}.env arch/arch-${arch}.orig ; \cp -f $env_file arch/arch-${arch}.env ; fi |
---|
| 918 | |
---|
[2030] | 919 | echo install.sh avant_compilation `date` |
---|
[3610] | 920 | if [ $compile_with_fcm = 1 ] ; then makelmdz="makelmdz_fcm $optim -arch $arch -j 8 " ; else makelmdz="makelmdz $optim -arch $arch" ; fi |
---|
[2031] | 921 | |
---|
[3044] | 922 | # sequential compilation and bench |
---|
| 923 | if [ "$sequential" = 1 ] ; then |
---|
[3610] | 924 | echo "./$makelmdz $optim $OPT_MAKELMDZ $optim -rrtm true $opt_cosp -d ${grid_resolution} -v $veget_version gcm " >> compile.sh |
---|
[3375] | 925 | chmod +x ./compile.sh |
---|
| 926 | if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi |
---|
[2030] | 927 | echo install.sh apres_compilation `date` |
---|
[1588] | 928 | |
---|
[2030] | 929 | |
---|
[3044] | 930 | fi # fin sequential |
---|
| 931 | |
---|
| 932 | |
---|
| 933 | |
---|
| 934 | # compiling in parallel mode |
---|
| 935 | if [ $parallel != "none" ] ; then |
---|
[3056] | 936 | echo '##########################################################' |
---|
| 937 | echo ' Parallel compile ' |
---|
| 938 | echo '##########################################################' |
---|
| 939 | # saving the sequential libs and binaries |
---|
| 940 | cd $MODEL/modipsl |
---|
| 941 | tar cf sequential.tar bin/ lib/ |
---|
| 942 | \rm -rf bin/ lib/ |
---|
| 943 | tar xf ioipsl.tar |
---|
| 944 | # |
---|
| 945 | # Orchidee |
---|
| 946 | # |
---|
| 947 | cd $ORCHPATH |
---|
[3922] | 948 | if [ -d src_parallel -a $veget != 'NONE' ] ; then |
---|
[3044] | 949 | cd arch |
---|
| 950 | sed \ |
---|
| 951 | -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \ |
---|
| 952 | -e s:"%LINK.*.$":"%LINK $par_comp":1 \ |
---|
| 953 | -e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \ |
---|
| 954 | -e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \ |
---|
| 955 | -e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \ |
---|
| 956 | -e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \ |
---|
| 957 | arch-local.fcm > tmp.fcm |
---|
| 958 | |
---|
| 959 | mv tmp.fcm arch-local.fcm |
---|
| 960 | cd ../ |
---|
[3091] | 961 | echo compiling ORCHIDEE parallel mode |
---|
| 962 | echo logfile $orchideelog |
---|
[3610] | 963 | ./makeorchidee_fcm -j 8 -clean -noxios $opt_orc -parallel $parallel -arch $arch > $orchideelog 2>&1 |
---|
| 964 | ./makeorchidee_fcm -j 8 -noxios $opt_orc -parallel $parallel -arch $arch >> $orchideelog 2>&1 |
---|
| 965 | echo ./makeorchidee_fcm -j 8 -clean -noxios $opt_orc -parallel $parallel -arch $arch |
---|
| 966 | echo ./makeorchidee_fcm -j 8 -noxios $opt_orc -parallel $parallel -arch $arch |
---|
[3922] | 967 | elif [ $veget != 'NONE' ] ; then |
---|
[3056] | 968 | echo '##########################################################' |
---|
| 969 | echo ' Orchidee version too old ' |
---|
| 970 | echo ' Please update to new version ' |
---|
| 971 | echo '##########################################################' |
---|
| 972 | exit |
---|
| 973 | fi # of if [ -d src_parallel ] |
---|
| 974 | # LMDZ |
---|
| 975 | cd $LMDZPATH |
---|
| 976 | if [ $arch = local ] ; then |
---|
| 977 | cd arch |
---|
| 978 | sed -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \ |
---|
| 979 | -e s:"%LINK.*.$":"%LINK $par_comp":1 \ |
---|
| 980 | -e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \ |
---|
| 981 | -e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \ |
---|
[3076] | 982 | -e s:"%ARFLAGS.*.$":"%ARFLAGS $ARFLAGS":1 \ |
---|
[3056] | 983 | -e s@"%BASE_LD.*.$"@"%BASE_LD -Wl,-rpath=${root_mpi}/lib:${ncdfdir}/lib"@1 \ |
---|
| 984 | -e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \ |
---|
| 985 | -e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \ |
---|
| 986 | arch-local.fcm > tmp.fcm |
---|
| 987 | mv tmp.fcm arch-local.fcm |
---|
| 988 | cd ../ |
---|
| 989 | fi |
---|
| 990 | rm -f compile.sh |
---|
| 991 | echo resol=${grid_resolution} >> compile.sh |
---|
[3736] | 992 | if [ ${hostname:0:5} = jean- -a "$cospv2" = 1 ] ; then |
---|
| 993 | echo ./$makelmdz -dev $optim $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh |
---|
| 994 | echo ./$makelmdz -dev $optim $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm |
---|
| 995 | else |
---|
| 996 | echo ./$makelmdz $optim $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh |
---|
| 997 | echo ./$makelmdz $optim $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm |
---|
| 998 | fi |
---|
[3375] | 999 | chmod +x ./compile.sh |
---|
| 1000 | if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi |
---|
[1588] | 1001 | |
---|
[3056] | 1002 | echo "Compilation finished" |
---|
| 1003 | |
---|
| 1004 | fi # of if [ $parallel != "none" ] |
---|
[3044] | 1005 | |
---|
| 1006 | |
---|
[1588] | 1007 | ################################################################## |
---|
[3044] | 1008 | # Verification du succes de la compilation |
---|
[1588] | 1009 | ################################################################## |
---|
[3044] | 1010 | |
---|
| 1011 | # Recherche de l'executable dont le nom a change au fil du temps ... |
---|
| 1012 | gcm="" |
---|
[3922] | 1013 | #for exe in gcm.e bin/gcm_${grid_resolution}_phylmd_seq_orch.e bin/gcm_${grid_resolution}_phylmd_seq.e bin/gcm_${grid_resolution}_phylmd_para_mem_orch.e bin/gcm_${grid_resolution}_phylmd_para_mem.e ; do |
---|
| 1014 | for exe in gcm.e bin/gcm_${grid_resolution}_phylmd${suff_exe}${suff_orc}.e ; do if [ -f $exe ] ; then gcm=$exe ; fi |
---|
[3044] | 1015 | done |
---|
| 1016 | |
---|
| 1017 | if [ "$gcm" = "" ] ; then |
---|
[3573] | 1018 | if [ $bench != 0 ] ; then |
---|
| 1019 | echo 'Compilation failed !! Cannot run the benchmark;' |
---|
| 1020 | exit |
---|
| 1021 | else |
---|
| 1022 | echo 'Compilation not done (only done when bench=1)' |
---|
| 1023 | fi |
---|
[3044] | 1024 | else |
---|
| 1025 | echo '##########################################################' |
---|
| 1026 | echo 'Compilation successfull !! ' |
---|
| 1027 | echo '##########################################################' |
---|
| 1028 | echo The executable is $gcm |
---|
[1588] | 1029 | fi |
---|
| 1030 | |
---|
[3044] | 1031 | ################################################################## |
---|
| 1032 | # Below, we run a benchmark test (if bench=0) |
---|
| 1033 | ################################################################## |
---|
| 1034 | |
---|
| 1035 | if [ $bench != 0 ] ; then |
---|
| 1036 | |
---|
[1588] | 1037 | echo '##########################################################' |
---|
[1731] | 1038 | echo ' Running a test run ' |
---|
[1588] | 1039 | echo '##########################################################' |
---|
| 1040 | |
---|
[2030] | 1041 | \rm -rf BENCH${grid_resolution} |
---|
[1588] | 1042 | bench=bench_lmdz_${grid_resolution} |
---|
[3417] | 1043 | echo install.sh before bench download `date` |
---|
[3044] | 1044 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$bench.tar.gz |
---|
[3076] | 1045 | myget 3DBenchs/$bench.tar.gz |
---|
[3044] | 1046 | echo install.sh after bench download `date` |
---|
| 1047 | tar xvf $bench.tar.gz |
---|
[1588] | 1048 | |
---|
[3735] | 1049 | if [ "$cosp" = 1 -o "$cosp2" = 1 -o "$cospv2" = 1 ] ; then |
---|
[3386] | 1050 | cd BENCH${grid_resolution} |
---|
| 1051 | # copier les fichiers namelist input et output our COSP |
---|
[3735] | 1052 | cp ../DefLists/cosp*_input_nl.txt . |
---|
| 1053 | cp ../DefLists/cosp*_output_nl.txt . |
---|
[3386] | 1054 | # Activer la cles ok_cosp pour tourner avec COSP |
---|
| 1055 | sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp |
---|
| 1056 | \mv -f tmp config.def |
---|
| 1057 | cd .. |
---|
| 1058 | fi |
---|
| 1059 | |
---|
[3646] | 1060 | if [ -n "$physiq" ]; then |
---|
| 1061 | cd BENCH${grid_resolution} |
---|
| 1062 | if [ -f physiq.def_${physiq} ]; then |
---|
| 1063 | cp physiq.def_${physiq} physiq.def |
---|
| 1064 | echo using physiq.def_${physiq} |
---|
| 1065 | else |
---|
| 1066 | echo using standard physiq.def |
---|
| 1067 | fi |
---|
| 1068 | cd .. |
---|
| 1069 | else |
---|
| 1070 | echo using standard physiq.def |
---|
| 1071 | fi |
---|
| 1072 | |
---|
[3056] | 1073 | if [ "$with_xios" = "y" ] ; then |
---|
| 1074 | cd BENCH${grid_resolution} |
---|
| 1075 | cp ../DefLists/iodef.xml . |
---|
| 1076 | cp ../DefLists/context_lmdz.xml . |
---|
| 1077 | cp ../DefLists/field_def_lmdz.xml . |
---|
[3733] | 1078 | cp ../DefLists/field_def_cosp*.xml . |
---|
[3056] | 1079 | cp ../DefLists/file_def_hist*xml . |
---|
| 1080 | # adapt iodef.xml to use attached mode |
---|
| 1081 | sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' iodef.xml > tmp |
---|
| 1082 | \mv -f tmp iodef.xml |
---|
[3386] | 1083 | |
---|
[3056] | 1084 | # and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE. |
---|
| 1085 | # except for histday |
---|
| 1086 | for histfile in file_def_hist*xml |
---|
| 1087 | do |
---|
| 1088 | if [ "$histfile" = "file_def_histday_lmdz.xml" ] ; then |
---|
| 1089 | sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' $histfile > tmp ; \mv -f tmp $histfile |
---|
[3560] | 1090 | sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile > tmp ; \mv -f tmp $histfile |
---|
| 1091 | sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile |
---|
[3056] | 1092 | else |
---|
| 1093 | sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' $histfile > tmp ; \mv -f tmp $histfile |
---|
| 1094 | fi |
---|
| 1095 | done |
---|
| 1096 | # and add option "ok_all_xml=y" in config.def |
---|
| 1097 | echo "### XIOS outputs" >> config.def |
---|
| 1098 | echo 'ok_all_xml=.true.' >> config.def |
---|
[3733] | 1099 | |
---|
| 1100 | #activer les sorties pour Cosp |
---|
[3735] | 1101 | if [ "$cosp" = 1 -o "$cosp2" = 1 ] ; then |
---|
[3733] | 1102 | histfile=file_def_histdayCOSP_lmdz.xml |
---|
| 1103 | sed -e 's@enabled=".FALSE."@enabled=".TRUE."@' $histfile > tmp ; \mv -f tmp $histfile |
---|
| 1104 | sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile > tmp ; \mv -f tmp $histfile |
---|
| 1105 | sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile |
---|
| 1106 | fi |
---|
[3735] | 1107 | if [ "$cospv2" = 1 ] ; then |
---|
| 1108 | histfile=file_def_histdayCOSPv2_lmdz.xml |
---|
| 1109 | sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile |
---|
| 1110 | contextfile=context_lmdz.xml |
---|
| 1111 | sed -e 's@src="./file_def_histdayCOSP_lmdz.xml"@src="./file_def_histdayCOSPv2_lmdz.xml"@' $contextfile > tmp ; \mv -f tmp $contextfile |
---|
| 1112 | fieldfile=field_def_lmdz.xml |
---|
| 1113 | sed -e 's@field_def_cosp1.xml@field_def_cospv2.xml@' $fieldfile > tmp ; \mv -f tmp $fieldfile |
---|
| 1114 | fi |
---|
| 1115 | |
---|
[3056] | 1116 | cd .. |
---|
| 1117 | fi |
---|
| 1118 | |
---|
[3044] | 1119 | cp $gcm BENCH${grid_resolution}/gcm.e |
---|
[1588] | 1120 | |
---|
| 1121 | cd BENCH${grid_resolution} |
---|
[3044] | 1122 | # On cree le fichier bench.sh au besoin |
---|
| 1123 | # Dans le cas 48x36x39 le bench.sh existe deja en parallele |
---|
[1588] | 1124 | |
---|
[3044] | 1125 | if [ "$grid_resolution" = "48x36x39" ] ; then |
---|
| 1126 | echo On ne touche pas au bench.sh |
---|
| 1127 | # But we have to adapt "run_local.sh" for $mpirun |
---|
| 1128 | sed -e "s@mpirun@$mpirun@g" run_local.sh > tmp |
---|
| 1129 | mv -f tmp run_local.sh |
---|
| 1130 | chmod u=rwx run_local.sh |
---|
| 1131 | elif [ "${parallel:0:3}" = "mpi" ] ; then |
---|
| 1132 | # Lancement avec deux procs mpi et 2 openMP |
---|
| 1133 | echo "export OMP_STACKSIZE=800M" > bench.sh |
---|
| 1134 | if [ "${parallel:4:3}" = "omp" ] ; then |
---|
| 1135 | echo "export OMP_NUM_THREADS=2" >> bench.sh |
---|
| 1136 | fi |
---|
[3735] | 1137 | if [ "$cospv2" = 1 -o "$cosp" = 1 -o "$cosp2" = 1 ] ; then |
---|
[3736] | 1138 | if [ ${hostname:0:5} = jean- ] ; then |
---|
| 1139 | chmod +x ../arch.env |
---|
| 1140 | ../arch.env |
---|
| 1141 | echo "ulimit -s 2000000" >> bench.sh |
---|
| 1142 | else |
---|
| 1143 | echo "ulimit -s 200000" >> bench.sh |
---|
| 1144 | fi |
---|
[3735] | 1145 | else |
---|
| 1146 | echo "ulimit -s unlimited" >> bench.sh |
---|
| 1147 | fi |
---|
[3573] | 1148 | if [ ${hostname:0:5} = jean- ] ; then |
---|
[3922] | 1149 | . ../arch/arch-${arch}.env |
---|
[3573] | 1150 | echo "srun -n 2 -A $idris_acct@cpu gcm.e > listing 2>&1" >> bench.sh |
---|
| 1151 | else |
---|
| 1152 | echo "$mpirun -np 2 gcm.e > listing 2>&1" >> bench.sh |
---|
| 1153 | fi |
---|
[3920] | 1154 | # Add rebuild, using reb.sh if it is there |
---|
| 1155 | echo 'if [ -f reb.sh ] ; then' >> bench.sh |
---|
[3922] | 1156 | echo ' ./reb.sh histday ; ./reb.sh histmth ; ./reb.sh histhf ; ./reb.sh histins ; ./reb.sh stomate_history ; ./reb.sh sechiba_history ; ./reb.sh sechiba_out_2 ' >> bench.sh |
---|
[3920] | 1157 | echo 'fi' >> bench.sh |
---|
[3044] | 1158 | else |
---|
| 1159 | echo "./gcm.e > listing 2>&1" > bench.sh |
---|
| 1160 | fi |
---|
[3922] | 1161 | # Getting orchidee stuff |
---|
| 1162 | if [ $veget == 'CMIP6' ] ; then |
---|
| 1163 | #echo 'myget 3DBenchs/BENCHorch11.tar.gz' |
---|
| 1164 | #myget 3DBenchs/BENCHorch11.tar.gz |
---|
| 1165 | #tar xvzf BENCHorch11.tar.gz |
---|
| 1166 | echo 'myget 3DBenchs/BENCHCMIP6.tar.gz' |
---|
| 1167 | myget 3DBenchs/BENCHCMIP6.tar.gz |
---|
| 1168 | tar xvzf BENCHCMIP6.tar.gz |
---|
| 1169 | sed -e "s:VEGET=n:VEGET=y:" config.def > tmp |
---|
| 1170 | mv -f tmp config.def |
---|
| 1171 | fi |
---|
[3044] | 1172 | echo EXECUTION DU BENCH |
---|
[3076] | 1173 | set +e |
---|
[3044] | 1174 | date ; ./bench.sh > out.bench 2>&1 ; date |
---|
[3076] | 1175 | set -e |
---|
[3044] | 1176 | tail listing |
---|
[2030] | 1177 | |
---|
[1588] | 1178 | |
---|
| 1179 | echo '##########################################################' |
---|
[1708] | 1180 | echo 'Simulation finished in' `pwd` |
---|
[3044] | 1181 | echo 'You have compiled with:' |
---|
| 1182 | cat ../compile.sh |
---|
| 1183 | if [ $parallel = "none" ] ; then |
---|
| 1184 | echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e' |
---|
| 1185 | echo 'or ./bench.sh' |
---|
| 1186 | else |
---|
| 1187 | echo 'You may re-run it with : ' |
---|
| 1188 | echo 'cd ' `pwd` '; ./bench.sh' |
---|
[3573] | 1189 | # echo 'ulimit -s unlimited' |
---|
| 1190 | # echo 'export OMP_NUM_THREADS=2' |
---|
| 1191 | # echo 'export OMP_STACKSIZE=800M' |
---|
| 1192 | # echo "$mpirun -np 2 gcm.e " |
---|
[3044] | 1193 | fi |
---|
[1588] | 1194 | echo '##########################################################' |
---|
[2030] | 1195 | |
---|
[3922] | 1196 | fi # bench |
---|
[3044] | 1197 | |
---|
| 1198 | |
---|
| 1199 | ################################################################# |
---|
| 1200 | # Installation eventuelle du 1D |
---|
| 1201 | ################################################################# |
---|
| 1202 | |
---|
| 1203 | if [ $SCM = 1 ] ; then |
---|
| 1204 | cd $MODEL |
---|
| 1205 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/1D.tar.gz |
---|
[3076] | 1206 | myget 1D/1D.tar.gz |
---|
[3044] | 1207 | tar xvf 1D.tar.gz |
---|
| 1208 | cd 1D |
---|
| 1209 | ./run.sh |
---|
| 1210 | fi |
---|
[3922] | 1211 | set -vx |
---|
| 1212 | |
---|
| 1213 | ################################################################# |
---|
| 1214 | # sauvegarde des options veget pour utilisation eventuelle tutorial_prod |
---|
| 1215 | ################################################################# |
---|
| 1216 | cd $MODEL/modipsl/modeles |
---|
| 1217 | echo surface_env file created in $MODEL |
---|
| 1218 | echo 'veget='$veget > surface_env |
---|
| 1219 | #opt_veget="-v $veget_version" |
---|
| 1220 | #echo 'opt_veget="'$opt_veget\" >> surface_env |
---|
| 1221 | echo 'opt_veget="'-v $veget_version\" >> surface_env |
---|
| 1222 | echo 'orchidee_rev='$orchidee_rev >> surface_env |
---|
| 1223 | echo 'suforch='$suff_orc >> surface_env |
---|
| 1224 | |
---|
| 1225 | |
---|
| 1226 | |
---|
| 1227 | |
---|