[1588] | 1 | #!/bin/bash |
---|
| 2 | |
---|
| 3 | ########################################################################### |
---|
[3044] | 4 | # Author : Laurent Fairhead et Frédéric Hourdin |
---|
| 5 | # Usage : install_lmdz.sh -help |
---|
[1588] | 6 | # |
---|
[1708] | 7 | # bash installation script of the LMDZ model on a Linux PC. |
---|
| 8 | # the model is downloaded in the following direcory tree |
---|
[1588] | 9 | # $MODEL/modipsl/modeles/... |
---|
[1708] | 10 | # using the "modipsl" infrastructure created by the "IPSL" |
---|
| 11 | # for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling |
---|
| 12 | # activities. |
---|
| 13 | # Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE) |
---|
| 14 | # components. |
---|
[1588] | 15 | # |
---|
[1708] | 16 | # The sources of the models can be found in the "modeles" directory. |
---|
| 17 | # In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs |
---|
| 18 | # using the NetCDF library. |
---|
[1588] | 19 | # |
---|
[1708] | 20 | # The script downloads various source files (including a version of NetCDF) |
---|
| 21 | # and utilities, compiles the model, and runs a test simulation in a |
---|
| 22 | # munimal configuration. |
---|
[1588] | 23 | # |
---|
[3044] | 24 | # Prerequisites : pgf90/gfortran, ksh, wget , gunzip, tar, ... |
---|
[1588] | 25 | # |
---|
[1589] | 26 | # Modif 18/11/2011 |
---|
[1708] | 27 | # changes for option real 8. |
---|
| 28 | # We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM |
---|
| 29 | # but with -r4 for netcdf. Variable real must be set to |
---|
| 30 | # r4 or r8 at the beginning of the script below. |
---|
[1589] | 31 | # |
---|
[1588] | 32 | ########################################################################### |
---|
| 33 | |
---|
[2030] | 34 | echo install.sh DEBUT `date` |
---|
[2031] | 35 | |
---|
[1911] | 36 | set -e |
---|
| 37 | |
---|
[3044] | 38 | ################################################################ |
---|
| 39 | # Choice of installation options |
---|
| 40 | ################################################################ |
---|
[1588] | 41 | |
---|
[3044] | 42 | # A function to fetch files either locally or on the internet |
---|
| 43 | function myget { #1st and only argument should be file name |
---|
| 44 | # Path on local computer where to look for the datafile |
---|
[3076] | 45 | if [ -f /u/lmdz/WWW/LMDZ/pub/$1 ] ; then |
---|
| 46 | \cp -f -p /u/lmdz/WWW/LMDZ/pub/$1 . |
---|
| 47 | elif [ -f ~/LMDZ/pub/$1 ] ; then |
---|
| 48 | \cp -f -p ~/LMDZ/pub/$1 . |
---|
[3044] | 49 | else |
---|
[3375] | 50 | wget -nv http://www.lmd.jussieu.fr/~lmdz/pub/$1 |
---|
[3076] | 51 | #dir=~/LMDZ/pub/`dirname $1` ; mkdir -p $dir ; cp -r `basename $1` $dir |
---|
[3044] | 52 | fi |
---|
| 53 | } |
---|
[1588] | 54 | |
---|
[3044] | 55 | |
---|
[1590] | 56 | #real=r4 |
---|
[1589] | 57 | real=r8 |
---|
| 58 | |
---|
[1708] | 59 | # WARNING !!!! For versions before october 2009, use |
---|
| 60 | # install.v2.sh instead of install.sh |
---|
[1588] | 61 | |
---|
[3044] | 62 | ######################################################################### |
---|
| 63 | # Valeur par défaut des parametres |
---|
| 64 | ######################################################################### |
---|
| 65 | svn="" |
---|
[3076] | 66 | version=trunk |
---|
[1588] | 67 | getlmdzor=1 |
---|
| 68 | netcdf=1 # 1 for automatic installation |
---|
| 69 | # 0 for no installation |
---|
| 70 | # /.../../netcdf-4.0.1 if wanting to link with an already |
---|
| 71 | # compiled netcdf library (implies to check option compatibility) |
---|
| 72 | check_linux=1 |
---|
| 73 | ioipsl=1 |
---|
[1693] | 74 | veget=1 |
---|
[3386] | 75 | orchidee_rev="" # default revision of ORCHIDEE |
---|
[1588] | 76 | bench=1 |
---|
| 77 | pclinux=1 |
---|
[3375] | 78 | pcmac=0 # default: not on a Mac |
---|
[3088] | 79 | compiler=gfortran |
---|
[3044] | 80 | SCM=0 |
---|
| 81 | # use the old orchidee interface without the calculation of z0h |
---|
| 82 | no_z0h_orc=1 |
---|
[2031] | 83 | # choose the resolution for the bench runs |
---|
[3044] | 84 | # grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE) |
---|
| 85 | # 96x71x19 standard configuration |
---|
| 86 | grid_resolution=144x142x79 |
---|
[3610] | 87 | grid_resolution=96x95x39 |
---|
[2409] | 88 | grid_resolution=48x36x19 |
---|
[3610] | 89 | grid_resolution=32x32x39 |
---|
[1693] | 90 | |
---|
[3044] | 91 | ## parallel can take the values none/mpi/omp/mpi_omp |
---|
| 92 | parallel=mpi_omp |
---|
[3573] | 93 | idris_acct=lmd |
---|
[3044] | 94 | parallel=none |
---|
| 95 | OPT_GPROF="" |
---|
| 96 | OPT_MAKELMDZ="" |
---|
| 97 | MODEL="" |
---|
[2031] | 98 | |
---|
[3056] | 99 | ## also compile XIOS? (and more recent NetCDF/HDF5 libraries) Default=no |
---|
| 100 | with_xios="n" |
---|
| 101 | opt_makelmdz_xios="" |
---|
[3375] | 102 | ## compile_with_fcm=1 : use makelmdz_fcm (1) or makelmdz (0) |
---|
| 103 | compile_with_fcm=1 |
---|
[3386] | 104 | cosp=0 ; opt_cosp1="" |
---|
| 105 | cosp=0 ; opt_cosp2="" |
---|
| 106 | opt_cosp="" |
---|
[3056] | 107 | |
---|
[3375] | 108 | # Check if on a Mac |
---|
| 109 | if [ `uname` = "Darwin" ] |
---|
| 110 | then |
---|
| 111 | pcmac=1 |
---|
| 112 | export MAKE=make |
---|
| 113 | fi |
---|
| 114 | #echo "pcmac="$pcmac |
---|
| 115 | |
---|
[3044] | 116 | ######################################################################### |
---|
| 117 | # Options interactives |
---|
| 118 | ######################################################################### |
---|
| 119 | while (($# > 0)) |
---|
| 120 | do |
---|
| 121 | case $1 in |
---|
| 122 | "-h") cat <<........fin |
---|
| 123 | $0 [ -v version ] [ -r svn_release ] |
---|
| 124 | [ -parallel PARA ] [ -d GRID_RESOLUTION ] [ -bench 0/1 ] |
---|
| 125 | [-name LOCAL_MODEL_NAME] [-gprof] [-opt_makelmdz] |
---|
[2031] | 126 | |
---|
[3044] | 127 | -v "version" like 20150828.trunk |
---|
| 128 | see http://www.lmd.jussieu.fr/~lmdz/Distrib/LISMOI.trunk |
---|
[2404] | 129 | |
---|
[3044] | 130 | -r "svn_release" : either the svn release number or "last" |
---|
[3088] | 131 | |
---|
| 132 | -compiler gfortran|ifort|pgf90 (default: gfortran) |
---|
[2404] | 133 | |
---|
[3044] | 134 | -parallel PARA : can be mpi_omp (mpi with openMP) or none (for sequential) |
---|
[2404] | 135 | |
---|
[3044] | 136 | -d GRID_RESOLUTION should be among the available benchs if -bench 1 |
---|
| 137 | among which : 48x36x19, 48x36x39 |
---|
| 138 | if wanting to run a bench simulation in addition to compilation |
---|
| 139 | default : 48x36x19 |
---|
| 140 | |
---|
| 141 | -bench activating the bench or not (0/1). Default 1 |
---|
| 142 | |
---|
| 143 | -name LOCAL_MODEL_NAME : default = LMDZversion.release |
---|
| 144 | |
---|
[3056] | 145 | -netcdf PATH : full path to an existing installed NetCDF library |
---|
| 146 | (without -netcdf: also download and install the NetCDF library) |
---|
| 147 | |
---|
| 148 | -xios also download and compile the XIOS library |
---|
| 149 | (requires the NetCDF4-HDF5 library, also installed by default) |
---|
| 150 | (requires to also have -parallel mpi_omp) |
---|
| 151 | |
---|
[3044] | 152 | -gprof to compile with -pg to enable profiling with gprof |
---|
[3056] | 153 | |
---|
[3375] | 154 | -orchidee_rev "svn_release" : upgrade included ORCHIDEE model to |
---|
[3386] | 155 | given svn release number (default: $orchidee_rev) |
---|
[3375] | 156 | (only valid for orchidee2.0 and later) |
---|
| 157 | |
---|
[3386] | 158 | -cosp to compile with cosp(v1) |
---|
| 159 | |
---|
| 160 | -cosp2 to compile with cosp(v2) |
---|
[3375] | 161 | |
---|
| 162 | -nofcm to compile without fcm |
---|
| 163 | |
---|
[3044] | 164 | -SCM install 1D version automatically |
---|
[3056] | 165 | |
---|
[3610] | 166 | -debug compile everything in debug mode |
---|
| 167 | |
---|
[3044] | 168 | -opt_makelmdz to call makelmdz or makelmdz_fcm with additional options |
---|
| 169 | ........fin |
---|
| 170 | exit ;; |
---|
| 171 | "-v") version=$2 ; shift ; shift ;; |
---|
| 172 | "-r") svn=$2 ; shift ; shift ;; |
---|
[3088] | 173 | "-compiler") compiler=$2 |
---|
| 174 | case $compiler in |
---|
| 175 | "gfortran"|"ifort"|"pgf90") compiler=$2 ; shift ; shift ;; |
---|
| 176 | *) echo "Only gfortran , ifort or pgf90 for the compiler option" ; exit |
---|
| 177 | esac ;; |
---|
[3044] | 178 | "-d") grid_resolution=$2 ; shift ; shift ;; |
---|
| 179 | "-gprof") OPT_GPROF="-pg" ; shift ;; |
---|
[3386] | 180 | "-cosp") cosp=1 ; opt_cosp1="-cosp true" ; shift ;; |
---|
| 181 | "-cosp2") cosp2=1 ; opt_cosp2="-cosp2 true" ; shift ;; |
---|
[3375] | 182 | "-orchidee_rev") orchidee_rev=$2 ; shift ; shift ;; |
---|
| 183 | "-nofcm") compile_with_fcm=0 ; shift ;; |
---|
[3044] | 184 | "-SCM") SCM=1 ; shift ;; |
---|
| 185 | "-opt_makelmdz") OPT_MAKELMDZ="$2" ; shift ; shift ;; |
---|
| 186 | "-parallel") parallel=$2 |
---|
| 187 | case $parallel in |
---|
[3064] | 188 | "none"|"mpi"|"omp"|"mpi_omp") parallel=$2 ; shift ; shift ;; |
---|
| 189 | *) echo Only none mpi omp mpi_omp for the parallel option ; exit |
---|
[3044] | 190 | esac ;; |
---|
| 191 | "-bench") bench=$2 ; shift ; shift ;; |
---|
[3610] | 192 | "-debug") optim=-debug ; shift ;; |
---|
[3044] | 193 | "-name") MODEL=$2 ; shift ; shift ;; |
---|
[3056] | 194 | "-netcdf") netcdf=$2 ; shift ; shift ;; |
---|
| 195 | "-xios") with_xios="y" ; shift ;; |
---|
[3044] | 196 | *) ./install_lmdz.sh -h ; exit |
---|
| 197 | esac |
---|
| 198 | done |
---|
| 199 | |
---|
| 200 | if [ $parallel = none ] ; then sequential=1 ; else sequential=0 ; fi |
---|
| 201 | |
---|
| 202 | #Chemin pour placer le modele |
---|
[3610] | 203 | if [ "$MODEL" = "" ] ; then MODEL=./LMDZ$version$svn$optim ; fi |
---|
[3044] | 204 | |
---|
| 205 | |
---|
| 206 | arch=local |
---|
| 207 | |
---|
| 208 | |
---|
[3088] | 209 | if [ $compiler = g95 ] ; then echo g95 is not supported anymore ; exit ; fi |
---|
[3044] | 210 | |
---|
| 211 | ################################################################ |
---|
| 212 | # Specificite des machines |
---|
| 213 | ################################################################ |
---|
| 214 | |
---|
| 215 | hostname=`hostname` |
---|
| 216 | if [ "$pclinux" = 1 ] ; then o_ins_make="-t g95" ; else o_ins_make="" ; fi |
---|
| 217 | |
---|
| 218 | case ${hostname:0:5} in |
---|
| 219 | |
---|
[3088] | 220 | ada33) compiler="ifort" ; |
---|
[3044] | 221 | par_comp="ifort" ; |
---|
| 222 | o_ins_make="-t ada" ; |
---|
| 223 | make=gmake ; |
---|
[3560] | 224 | module load intel/2017.2 ; |
---|
[3044] | 225 | arch=X64_ADA ;; |
---|
| 226 | |
---|
[3573] | 227 | jean-) compiler="mpiifort" ; |
---|
| 228 | par_comp="mpiifort" ; |
---|
| 229 | o_ins_make="-t jeanzay" ; |
---|
| 230 | make=gmake ; |
---|
[3610] | 231 | module purge |
---|
[3573] | 232 | module load intel-compilers/19.0.4 ; |
---|
| 233 | module load intel-mpi/19.0.4 ; |
---|
| 234 | module load hdf5/1.10.5/intel-19.0.4-mpi ; |
---|
| 235 | module load netcdf/4.7.0/intel-19.0.4-mpi ; |
---|
| 236 | module load netcdf-fortran/4.4.5/intel-19.0.4-mpi ; |
---|
| 237 | module load subversion/1.9.7/gcc-4.8.5 ; |
---|
| 238 | module load intel-mkl/19.0.4 ; |
---|
| 239 | export NETCDF_LIBDIR=./ |
---|
| 240 | export NETCDFFORTRAN_INCDIR=./ |
---|
| 241 | export NETCDFFORTRAN_LIBDIR=./ |
---|
| 242 | arch=X64_JEANZAY ;; |
---|
| 243 | |
---|
[3375] | 244 | cicla|camel) compiler="gfortran" ; |
---|
[3056] | 245 | if [ $parallel != none ] ; then |
---|
[3375] | 246 | module load openmpi/1.6.5-gfortran ; |
---|
[3056] | 247 | root_mpi=$MPI_HOME ; |
---|
| 248 | path_mpi=$root_mpi/bin ; |
---|
| 249 | par_comp=${path_mpi}/mpif90 ; |
---|
| 250 | mpirun=${path_mpi}/mpirun ; |
---|
| 251 | fi ; |
---|
| 252 | arch=local ; |
---|
| 253 | make=make ; |
---|
| 254 | o_ins_make="-t g95" ;; |
---|
| 255 | |
---|
[3088] | 256 | *) if [ $parallel = none -o -f /usr/bin/mpif90 ] ; then |
---|
[3076] | 257 | path_mpi=`which mpif90 | sed -e s:/mpif90::` ; |
---|
[3056] | 258 | if [ -d /usr/lib64/openmpi ] ; then |
---|
| 259 | root_mpi="/usr/lib64/openmpi" |
---|
| 260 | else |
---|
| 261 | root_mpi="/usr" |
---|
| 262 | fi |
---|
[3088] | 263 | # For Scientifique Linux with gfortran at LMD : |
---|
[3375] | 264 | elif [ -f /usr/lib64/openmpi/1.4.5-gfortran/bin/mpif90 -a $compiler = "gfortran" ] ; then |
---|
[3056] | 265 | path_mpi=/usr/lib64/openmpi/1.4.5-gfortran/bin ; |
---|
| 266 | root_mpi=/usr/lib64/openmpi/1.4.5-gfortran ; |
---|
| 267 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
---|
[3088] | 268 | # For Scientifique Linux with ifort at LMD : |
---|
[3375] | 269 | elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a $compiler = "ifort" ] ; then |
---|
[3088] | 270 | path_mpi=/usr/lib64/openmpi/1.4.5-ifort/bin ; |
---|
| 271 | root_mpi=/usr/lib64/openmpi/1.4.5-ifort ; |
---|
| 272 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
---|
| 273 | # For Scientifique Linux with pgf90 at LMD : |
---|
[3375] | 274 | elif [ -f /usr/lib64/openmpi/1.4.5-ifort/bin/mpif90 -a $compiler = "pgf90" ] ; then |
---|
[3088] | 275 | path_mpi=/usr/lib64/openmpi/1.4.5-pgf/bin ; |
---|
| 276 | root_mpi=/usr/lib64/openmpi/1.4.5-pgf ; |
---|
| 277 | export LD_LIBRARY_PATH=${root_mpi}/lib:$LD_LIBRARY_PATH |
---|
[3044] | 278 | else |
---|
[3056] | 279 | echo "Cannot find mpif90" ; |
---|
[3610] | 280 | if [ $parallel = none ] ; then exit ; fi ; |
---|
[3044] | 281 | fi ; |
---|
[3056] | 282 | par_comp=${path_mpi}/mpif90 ; |
---|
| 283 | mpirun=${path_mpi}/mpirun ; |
---|
[3044] | 284 | arch=local ; |
---|
| 285 | make=make ; |
---|
| 286 | o_ins_make="-t g95" |
---|
| 287 | esac |
---|
| 288 | |
---|
[3088] | 289 | # Flags for parallelism: |
---|
| 290 | if [ $parallel != none ] ; then |
---|
| 291 | # MPI_LD are the flags needed for linking with MPI |
---|
| 292 | MPI_LD="-L${root_mpi}/lib -lmpi" |
---|
| 293 | if [ "$compiler" = "gfortran" ] ; then |
---|
| 294 | # MPI_FLAGS are the flags needed for compilation with MPI |
---|
| 295 | MPI_FLAGS="-fcray-pointer" |
---|
| 296 | # OMP_FLAGS are the flags needed for compilation with OpenMP |
---|
| 297 | OMP_FLAGS="-fopenmp -fcray-pointer" |
---|
| 298 | # OMP_LD are the flags needed for linking with OpenMP |
---|
| 299 | OMP_LD="-fopenmp" |
---|
| 300 | elif [ "$compiler" = "ifort" ] ; then |
---|
| 301 | MPI_FLAGS="" |
---|
| 302 | OMP_FLAGS="-openmp" |
---|
| 303 | OMP_LD="-openmp" |
---|
| 304 | else # pgf90 |
---|
| 305 | MPI_FLAGS="" |
---|
| 306 | OMP_FLAGS="-mp" |
---|
| 307 | OMP_LD="-mp" |
---|
| 308 | fi |
---|
| 309 | fi |
---|
[3044] | 310 | |
---|
[1693] | 311 | ##################################################################### |
---|
| 312 | # Test for old gfortran compilers |
---|
[2030] | 313 | # If the compiler is too old (older than 4.3.x) we test if the |
---|
| 314 | # temporary gfortran44 patch is available on the computer in which |
---|
| 315 | # case the compiler is changed from gfortran to gfortran44 |
---|
| 316 | # Must be aware than parallelism can not be activated in this case |
---|
| 317 | ##################################################################### |
---|
| 318 | |
---|
[3088] | 319 | if [ "$compiler" = "gfortran" ] ; then |
---|
[2030] | 320 | gfortran=gfortran |
---|
[1693] | 321 | gfortranv=`gfortran --version | \ |
---|
| 322 | head -1 | awk ' { print $NF } ' | awk -F. ' { print $1 * 10 + $2 } '` |
---|
| 323 | if [ $gfortranv -le 43 ] ; then |
---|
[1708] | 324 | echo ERROR : Your gfortran compiler is too old |
---|
[3044] | 325 | echo 'Please choose a new one (ifort) and change the line' |
---|
[3088] | 326 | echo compiler=xxx |
---|
[1693] | 327 | echo in the install.sh script and rerun it |
---|
[2030] | 328 | if [ `which gfortran44 | wc -w` -ne 0 ] ; then |
---|
| 329 | gfortran=gfortran44 |
---|
| 330 | else |
---|
| 331 | echo gfotran trop vieux ; exit |
---|
| 332 | fi |
---|
[1693] | 333 | fi |
---|
[3088] | 334 | compiler=$gfortran |
---|
[1693] | 335 | fi |
---|
| 336 | ##################################################################### |
---|
| 337 | |
---|
[3056] | 338 | ## if also compiling XIOS, parallel must be mpi_omp |
---|
| 339 | if [ "$with_xios" = "y" -a "$parallel" != "mpi_omp" ] ; then |
---|
| 340 | echo "Error, you must set -parallel mpi_omp if you want XIOS" |
---|
| 341 | exit |
---|
| 342 | fi |
---|
[3386] | 343 | |
---|
| 344 | ## We can't compile with -cosp and -cosp2 |
---|
| 345 | if [ "$cosp" = 1 -a "$cosp2" = 1 ] ; then |
---|
| 346 | echo "Error, you can't run with cosp1 and cosp2" |
---|
| 347 | exit |
---|
| 348 | fi |
---|
| 349 | if [ "$cosp" = 1 ] ; then |
---|
| 350 | opt_cosp="$opt_cosp1" |
---|
| 351 | fi |
---|
| 352 | if [ "$cosp2" = 1 ] ; then |
---|
| 353 | opt_cosp="$opt_cosp2" |
---|
| 354 | fi |
---|
| 355 | |
---|
| 356 | ## if also compiling XIOS, cosp must be activate to define axis in *.xml |
---|
[3417] | 357 | if [ "$with_xios" = "y" ] ; then |
---|
| 358 | if [ ! "$cosp" = 1 -o "$cosp2" = 1 ] ; then |
---|
[3386] | 359 | echo "Error, you must use -cosp option when compiling with -xios" |
---|
| 360 | echo "You need to call Cosp in physical first step to define axis variables" |
---|
| 361 | exit |
---|
[3417] | 362 | fi |
---|
[3056] | 363 | opt_makelmdz_xios="-io xios" |
---|
| 364 | fi |
---|
[1693] | 365 | |
---|
[1588] | 366 | echo '################################################################' |
---|
| 367 | echo Choix des options de compilation |
---|
| 368 | echo '################################################################' |
---|
[1589] | 369 | |
---|
[3088] | 370 | export FC=$compiler |
---|
| 371 | export F90=$compiler |
---|
| 372 | export F77=$compiler |
---|
[2031] | 373 | export CPPFLAGS= |
---|
[3044] | 374 | OPTIMNC=$OPTIM |
---|
| 375 | BASE_LD="$OPT_GPROF" |
---|
| 376 | OPTPREC="$OPT_GPROF" |
---|
[3076] | 377 | ARFLAGS="rs" ; if [ -f /etc/issue ] ; then if [ "`grep -i ubuntu /etc/issue`" != "" ] ; then if [ "`grep -i ubuntu /etc/issue | awk ' { print $2 } ' | cut -d. -f1`" -ge 16 ] ; then ARFLAGS="rU" ; fi ; fi ; fi |
---|
[3044] | 378 | |
---|
[3076] | 379 | |
---|
| 380 | |
---|
[3088] | 381 | if [ "$compiler" = "$gfortran" ] ; then |
---|
[2031] | 382 | OPTIM='-O3' |
---|
[3044] | 383 | OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -fbacktrace -finit-real=nan" |
---|
[2031] | 384 | OPTDEV="-Wall -fbounds-check" |
---|
| 385 | fmod='I ' |
---|
[3044] | 386 | OPTPREC="$OPTPREC -cpp -ffree-line-length-0" |
---|
[2409] | 387 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE" ; fi |
---|
[2031] | 388 | export F90FLAGS=" -ffree-form $OPTIMNC" |
---|
| 389 | export FFLAGS=" $OPTIMNC" |
---|
| 390 | export CC=gcc |
---|
| 391 | export CXX=g++ |
---|
[3044] | 392 | export fpp_flags="-P -C -traditional -ffreestanding" |
---|
| 393 | |
---|
[3088] | 394 | elif [ $compiler = mpif90 ] ; then |
---|
[1589] | 395 | OPTIM='-O3' |
---|
[3044] | 396 | OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all" |
---|
[2031] | 397 | OPTDEV="-Wall -fbounds-check" |
---|
[3044] | 398 | BASE_LD="$BASE_LD -lblas" |
---|
[2031] | 399 | fmod='I ' |
---|
[3044] | 400 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE -fcray-pointer" ; fi |
---|
[2031] | 401 | export F90FLAGS=" -ffree-form $OPTIMNC" |
---|
| 402 | export FFLAGS=" $OPTIMNC" |
---|
| 403 | export CC=gcc |
---|
| 404 | export CXX=g++ |
---|
[3044] | 405 | |
---|
[3088] | 406 | elif [ $compiler = pgf90 ] ; then |
---|
[2203] | 407 | OPTIM='-O2 -Mipa -Munroll -Mnoframe -Mautoinline -Mcache_align' |
---|
| 408 | OPTDEB='-g -Mdclchk -Mbounds -Mchkfpstk -Mchkptr -Minform=inform -Mstandard -Ktrap=fp -traceback' |
---|
| 409 | OPTDEV='-g -Mbounds -Ktrap=fp -traceback' |
---|
[2031] | 410 | fmod='module ' |
---|
[3044] | 411 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -r8 -DNC_DOUBLE" ; fi |
---|
[2203] | 412 | export CPPFLAGS="-DpgiFortran" |
---|
[2031] | 413 | export CC=pgcc |
---|
[2203] | 414 | export CFLAGS="-O2 -Msignextend" |
---|
[2031] | 415 | export CXX=pgCC |
---|
[2203] | 416 | export CXXFLAGS="-O2 -Msignextend" |
---|
| 417 | export FFLAGS="-O2 $OPTIMNC" |
---|
| 418 | export F90FLAGS="-O2 $OPTIMNC" |
---|
[1590] | 419 | compile_with_fcm=1 |
---|
[3044] | 420 | |
---|
[3088] | 421 | elif [ $compiler = ifort ] ; then |
---|
[2031] | 422 | OPTIM="-O2 -fp-model strict -ip -align all " |
---|
| 423 | OPTDEV="-p -g -O2 -traceback -fp-stack-check -ftrapuv -check" |
---|
| 424 | OPTDEB="-g -no-ftz -traceback -ftrapuv -fp-stack-check -check" |
---|
| 425 | fmod='module ' |
---|
[3044] | 426 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi |
---|
[2031] | 427 | export CPP="icc -E" |
---|
| 428 | export FFLAGS="-O2 -ip -fpic -mcmodel=large" |
---|
| 429 | export FCFLAGS="-O2 -ip -fpic -mcmodel=large" |
---|
| 430 | export CC=icc |
---|
| 431 | export CFLAGS="-O2 -ip -fpic -mcmodel=large" |
---|
| 432 | export CXX=icpc |
---|
| 433 | export CXXFLAGS="-O2 -ip -fpic -mcmodel=large" |
---|
[3375] | 434 | export fpp_flags="-P -traditional" |
---|
[3610] | 435 | # Pourquoi forcer la compilation fcm. Marche mieux sans |
---|
| 436 | #compile_with_fcm=1 |
---|
[3044] | 437 | |
---|
[3573] | 438 | elif [ $compiler = mpiifort ] ; then |
---|
[3610] | 439 | echo on ne fait rien la |
---|
| 440 | # Pourquoi forcer la compilation fcm. Marche mieux sans |
---|
| 441 | #compile_with_fcm=1 |
---|
[3573] | 442 | |
---|
[2031] | 443 | else |
---|
[3088] | 444 | echo unexpected compiler $compiler ; exit |
---|
[1588] | 445 | fi |
---|
[2031] | 446 | |
---|
[1589] | 447 | OPTIMGCM="$OPTIM $OPTPREC" |
---|
[1588] | 448 | |
---|
| 449 | hostname=`hostname` |
---|
| 450 | |
---|
| 451 | ########################################################################## |
---|
[1731] | 452 | # If installing on know machines such as IBM x3750 (Ada) |
---|
[1708] | 453 | # at IDRIS, don't check for available software and don"t install netcdf |
---|
[1777] | 454 | if [ ${hostname:0:5} = ada33 ] ; then |
---|
[1731] | 455 | netcdf=0 # no need to recompile netcdf, alreday available |
---|
| 456 | check_linux=0 |
---|
| 457 | pclinux=0 |
---|
[3044] | 458 | ioipsl=1 # no need to recompile ioipsl, already available |
---|
[1731] | 459 | #netcdf="/smplocal/pub/NetCDF/4.1.3" |
---|
[3088] | 460 | compiler="ifort" |
---|
[1731] | 461 | fmod='module ' |
---|
[3044] | 462 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -real-size 64 -DNC_DOUBLE" ; fi |
---|
[1731] | 463 | OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all " |
---|
| 464 | OPTIMGCM="$OPTIM $OPTPREC" |
---|
[1588] | 465 | fi |
---|
[3573] | 466 | if [ ${hostname:0:5} = jean- ] ; then |
---|
| 467 | netcdf=0 # no need to recompile netcdf, alreday available |
---|
| 468 | check_linux=0 |
---|
| 469 | pclinux=0 |
---|
| 470 | ioipsl=0 # no need to recompile ioipsl, already available |
---|
| 471 | #netcdf="/smplocal/pub/NetCDF/4.1.3" |
---|
| 472 | compiler="mpiifort" |
---|
| 473 | fmod='module ' |
---|
| 474 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -i4 -r8 -DNC_DOUBLE" ; fi |
---|
| 475 | OPTIM="-auto -align all -O2 -fp-model strict -xHost " |
---|
| 476 | OPTIMGCM="$OPTIM $OPTPREC" |
---|
| 477 | fi |
---|
[1588] | 478 | ########################################################################## |
---|
| 479 | |
---|
| 480 | |
---|
[3044] | 481 | |
---|
[1588] | 482 | mkdir -p $MODEL |
---|
| 483 | echo $MODEL |
---|
[1708] | 484 | MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary |
---|
[1588] | 485 | |
---|
| 486 | |
---|
| 487 | |
---|
[1708] | 488 | # Option -fendian=big is only to be used with ARPEGE1D. |
---|
| 489 | # The -r8 should probably be avoided if running on 32 bit machines |
---|
| 490 | # Option r8 is not mandatory and generates larger executables. |
---|
| 491 | # It is however mandatory if using ARPEGE1D |
---|
| 492 | # Better optimization options might be a better choice (e.g. -O3) |
---|
[1588] | 493 | |
---|
| 494 | |
---|
| 495 | echo '################################################################' |
---|
| 496 | if [ "$check_linux" = 1 ] ; then |
---|
[1708] | 497 | echo Check if required software is available |
---|
[1588] | 498 | echo '################################################################' |
---|
| 499 | |
---|
| 500 | #### Ehouarn: test if ksh and/or bash are available |
---|
| 501 | use_shell="ksh" # default: use ksh |
---|
| 502 | if [ "`which ksh`" = "" ] ; then |
---|
[1708] | 503 | echo "no ksh ... we will use bash" |
---|
[1588] | 504 | use_shell="bash" |
---|
| 505 | if [ "`which bash`" = "" ] ; then |
---|
[1708] | 506 | echo "ksh (or bash) needed!! Install it!" |
---|
[1588] | 507 | fi |
---|
| 508 | fi |
---|
| 509 | |
---|
| 510 | |
---|
[3610] | 511 | for logiciel in wget tar gzip make $compiler gcc ; do |
---|
[1588] | 512 | if [ "`which $logiciel`" = "" ] ; then |
---|
[1708] | 513 | echo You must first install $logiciel on your system |
---|
[1588] | 514 | exit |
---|
| 515 | fi |
---|
| 516 | done |
---|
| 517 | |
---|
| 518 | if [ $pclinux = 1 ] ; then |
---|
| 519 | cd $MODEL |
---|
[2030] | 520 | cat <<eod > tt.f90 |
---|
[1588] | 521 | print*,'coucou' |
---|
| 522 | end |
---|
| 523 | eod |
---|
[3088] | 524 | $compiler tt.f90 -o a.out |
---|
[1588] | 525 | ./a.out >| tt |
---|
| 526 | if [ "`cat tt | sed -e 's/ //g' `" != "coucou" ] ; then |
---|
[3088] | 527 | echo problem installing with compiler $compiler ; exit ; fi |
---|
[1588] | 528 | \rm tt a.out tt.f90 |
---|
| 529 | fi |
---|
| 530 | fi |
---|
| 531 | |
---|
| 532 | ########################################################################### |
---|
| 533 | if [ $getlmdzor = 1 ] ; then |
---|
| 534 | echo '##########################################################' |
---|
[1708] | 535 | echo Download a slightly modified version of LMDZ |
---|
[1588] | 536 | echo '##########################################################' |
---|
| 537 | cd $MODEL |
---|
[3076] | 538 | myget src/modipsl.$version.tar.gz |
---|
[3044] | 539 | echo install.sh wget_OK `date` |
---|
| 540 | gunzip modipsl.$version.tar.gz |
---|
| 541 | tar xvf modipsl.$version.tar |
---|
| 542 | \rm modipsl.$version.tar |
---|
[1588] | 543 | |
---|
| 544 | fi |
---|
| 545 | |
---|
| 546 | echo OK1 |
---|
| 547 | |
---|
| 548 | if [ $netcdf = 1 ] ; then |
---|
[3091] | 549 | cd $MODEL |
---|
| 550 | netcdflog=`pwd`/netcdf.log |
---|
[1588] | 551 | echo '##########################################################' |
---|
[1708] | 552 | echo Compiling the Netcdf library |
---|
[1588] | 553 | echo '##########################################################' |
---|
[3091] | 554 | echo log file : $netcdflog |
---|
[3056] | 555 | if [ "$with_xios" = "n" ] ; then |
---|
| 556 | # keep it simple |
---|
| 557 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/netcdf-4.0.1.tar.gz |
---|
[3076] | 558 | myget import/netcdf-4.0.1.tar.gz |
---|
[3056] | 559 | gunzip netcdf-4.0.1.tar.gz |
---|
| 560 | tar xvf netcdf-4.0.1.tar |
---|
| 561 | \rm -f netcdf-4.0.1.tar |
---|
[1588] | 562 | |
---|
[3056] | 563 | cd netcdf-4.0.1 |
---|
[1588] | 564 | |
---|
[3056] | 565 | # seds to possibly use gfortran44 obsolete nowdays (Ehouarn: 10/2017) |
---|
| 566 | #sed -e 's/gfortran/'$gfortran'/g' configure >| tmp ; mv -f tmp configure ; chmod +x configure |
---|
| 567 | localdir=`pwd -P` |
---|
| 568 | ./configure --prefix=$localdir --enable-shared --disable-cxx |
---|
| 569 | #sed -e 's/gfortran/'$gfortran'/g' Makefile >| tmp ; mv -f tmp Makefile |
---|
[3091] | 570 | $make check > $netcdflog 2>&1 |
---|
| 571 | $make install >> $netcdflog 2>&1 |
---|
[3056] | 572 | else |
---|
| 573 | # download and compile hdf5 and netcdf, etc. using the install_netcdf4_hdf5.bash script |
---|
| 574 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_netcdf4_hdf5.bash |
---|
[3076] | 575 | myget import/install_netcdf4_hdf5.bash |
---|
[3056] | 576 | chmod u=rwx install_netcdf4_hdf5.bash |
---|
[3088] | 577 | if [ "$compiler" = "gfortran" ] ; then |
---|
[3560] | 578 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC gcc -FC gfortran -CXX g++ -MPI $root_mpi > $netcdflog 2>&1 |
---|
[3088] | 579 | elif [ "$compiler" = "ifort" ] ; then |
---|
[3560] | 580 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC icc -FC ifort -CXX icpc -MPI $root_mpi > $netcdflog 2>&1 |
---|
[3088] | 581 | elif [ "$compiler" = "pgf90" ] ; then |
---|
[3560] | 582 | ./install_netcdf4_hdf5.bash -prefix $MODEL/netcdf4_hdf5 -CC pgcc -FC pgf90 -CXX pgCC -MPI $root_mpi > $netcdflog 2>&1 |
---|
[3056] | 583 | else |
---|
[3088] | 584 | echo "unexpected compiler $compiler" ; exit |
---|
[3056] | 585 | fi |
---|
| 586 | fi # of if [ "$with_xios" = "n" ] |
---|
[2030] | 587 | echo install.sh netcdf_OK `date` |
---|
[1731] | 588 | fi # of if [ $netcdf = 1 ] |
---|
[1588] | 589 | |
---|
[2030] | 590 | |
---|
[1800] | 591 | #======================================================================================= |
---|
[1588] | 592 | echo OK2 ioipsl=$ioipsl |
---|
| 593 | echo '##########################################################' |
---|
[1731] | 594 | echo 'Installing MODIPSL, the installation package manager for the ' |
---|
| 595 | echo 'IPSL models and tools' |
---|
[1588] | 596 | echo '##########################################################' |
---|
| 597 | |
---|
| 598 | if [ $netcdf = 0 -o $netcdf = 1 ] ; then |
---|
[3056] | 599 | if [ "$with_xios" = "y" ] ; then |
---|
| 600 | ncdfdir=$MODEL/netcdf4_hdf5 |
---|
| 601 | else |
---|
| 602 | ncdfdir=$MODEL/netcdf-4.0.1 |
---|
| 603 | fi |
---|
[1588] | 604 | else |
---|
[3056] | 605 | ncdfdir=$netcdf |
---|
[1588] | 606 | fi |
---|
| 607 | |
---|
| 608 | if [ $ioipsl = 1 ] ; then |
---|
[1731] | 609 | cd $MODEL/modipsl |
---|
[2030] | 610 | \rm -rf lib/* |
---|
[2031] | 611 | |
---|
[1731] | 612 | cd util |
---|
[1588] | 613 | |
---|
[1731] | 614 | cp AA_make.gdef AA_make.orig |
---|
[3088] | 615 | F_C="$compiler -c " ; if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then F_C="$compiler -c -cpp " ; fi |
---|
| 616 | if [ "$compiler" = "pgf90" ] ; then F_C="$compiler -c -Mpreprocess" ; fi |
---|
[1731] | 617 | sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp |
---|
[3088] | 618 | sed -e "s:F_L = g95:F_L = $compiler:" -e "s:F_C = g95 -c -cpp:F_C = $F_C": \ |
---|
[1731] | 619 | -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ |
---|
| 620 | -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= '"$ncdfdir"'/include:' \ |
---|
[3044] | 621 | -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdff -lnetcdf:' \ |
---|
[3063] | 622 | -e 's:g95 L_O =:g95 L_O = -Wl,-rpath='"$ncdfdir"'/lib:' \ |
---|
[1731] | 623 | -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ |
---|
| 624 | -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ |
---|
| 625 | tmp >| AA_make.gdef |
---|
[1588] | 626 | |
---|
[3375] | 627 | if [ $pcmac == 1 ] |
---|
| 628 | then |
---|
| 629 | cp AA_make.gdef tmp |
---|
| 630 | sed -e 's/rpath=/rpath,/g' tmp > AA_make.gdef |
---|
| 631 | fi |
---|
| 632 | |
---|
[1588] | 633 | |
---|
[3044] | 634 | # We use lines for g95 even for the other compilers to run ins_make |
---|
[1731] | 635 | if [ "$use_shell" = "ksh" ] ; then |
---|
[3044] | 636 | ./ins_make $o_ins_make |
---|
[1731] | 637 | else # bash |
---|
| 638 | sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash |
---|
[3044] | 639 | if [ "`grep ada AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar |
---|
| 640 | \cp -f ~rdzt401/bin/AA_make.gdef . |
---|
| 641 | fi |
---|
[3573] | 642 | if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar |
---|
| 643 | echo 'Warning jean-zay not in AA_make.gdef' |
---|
| 644 | echo 'Think about updating' |
---|
| 645 | exit 1 |
---|
| 646 | fi |
---|
[3375] | 647 | |
---|
[1731] | 648 | chmod u=rwx ins_make.bash |
---|
[3044] | 649 | ./ins_make.bash $o_ins_make |
---|
[1731] | 650 | fi # of if [ "$use_shell" = "ksh" ] |
---|
| 651 | |
---|
[2031] | 652 | #======================================================================================= |
---|
[3091] | 653 | cd $MODEL/modipsl/modeles/IOIPSL/src |
---|
[3092] | 654 | ioipsllog=`pwd`/ioipsl.log |
---|
[1731] | 655 | echo '##########################################################' |
---|
| 656 | echo 'Compiling IOIPSL, the interface library with Netcdf' |
---|
| 657 | echo '##########################################################' |
---|
[3091] | 658 | echo log file : $ioipsllog |
---|
[1731] | 659 | |
---|
| 660 | if [ "$use_shell" = "bash" ] ; then |
---|
| 661 | cp Makefile Makefile.ksh |
---|
| 662 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
---|
[1588] | 663 | fi |
---|
[3044] | 664 | # if [ "$pclinux" = 1 ] ; then |
---|
[1731] | 665 | # Build IOIPSL modules and library |
---|
[3044] | 666 | $make clean |
---|
[3091] | 667 | $make > $ioipsllog 2>&1 |
---|
[3088] | 668 | if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then # copy module files to lib |
---|
[1731] | 669 | cp -f *.mod ../../../lib |
---|
| 670 | fi |
---|
| 671 | # Build IOIPSL tools (ie: "rebuild", if present) |
---|
| 672 | if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then |
---|
| 673 | cd $MODEL/modipsl/modeles/IOIPSL/tools |
---|
| 674 | # adapt Makefile & rebuild script if in bash |
---|
| 675 | if [ "$use_shell" = "bash" ] ; then |
---|
| 676 | cp Makefile Makefile.ksh |
---|
| 677 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
---|
| 678 | cp rebuild rebuild.ksh |
---|
| 679 | sed -e 's:/bin/ksh:/bin/bash:g' \ |
---|
| 680 | -e 's:print -u2:echo:g' \ |
---|
| 681 | -e 's:print:echo:g' rebuild.ksh > rebuild |
---|
| 682 | fi |
---|
[3044] | 683 | $make clean |
---|
[3091] | 684 | $make > $ioipsllog 2>&1 |
---|
[1731] | 685 | fi |
---|
[3044] | 686 | # fi # of if [ "$pclinux" = 1 ] |
---|
[1588] | 687 | |
---|
[1731] | 688 | else # of if [ $ioipsl = 1 ] |
---|
[1777] | 689 | if [ ${hostname:0:5} = ada33 ] ; then |
---|
[1731] | 690 | cd $MODEL/modipsl |
---|
| 691 | cd util |
---|
[1588] | 692 | |
---|
[1731] | 693 | cp AA_make.gdef AA_make.orig |
---|
| 694 | sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp |
---|
[3088] | 695 | sed -e "s:F_L = g95:F_L = $compiler:" -e "s:F_C = g95 -c:F_C = $compiler -c": \ |
---|
[1731] | 696 | -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ |
---|
| 697 | -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= -I/smplocal/pub/HDF5/1.8.9/seq/include -I/smplocal/pub/NetCDF/4.1.3/include:' \ |
---|
| 698 | -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L/smplocal/pub/NetCDF/4.1.3/lib -lnetcdff -lnetcdf:' \ |
---|
| 699 | -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ |
---|
| 700 | -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ |
---|
| 701 | tmp >| AA_make.gdef |
---|
| 702 | |
---|
[3044] | 703 | ./ins_make $o_ins_make # We use lines for g95 even for the other compilers |
---|
[1731] | 704 | |
---|
| 705 | # on Ada, IOIPSL is already installed in ~rpsl035/IOIPSL_PLUS |
---|
| 706 | # so link it to current settings |
---|
| 707 | cd $MODEL/modipsl/modeles/ |
---|
| 708 | \rm -r -f IOIPSL |
---|
| 709 | ln -s ~rpsl035/IOIPSL_PLUS IOIPSL |
---|
| 710 | cd .. |
---|
[3044] | 711 | ln -s ~rpsl035/IOIPSL_PLUS/modipsl_Tagv2_2_3/bin/* bin/ |
---|
| 712 | ln -s ~rpsl035/IOIPSL_PLUS/modipsl_Tagv2_2_3/lib/* lib/ |
---|
[3573] | 713 | elif [ ${hostname:0:5} = jean- ] ; then |
---|
| 714 | cd $MODEL/modipsl |
---|
| 715 | cd util |
---|
| 716 | if [ "`grep jeanzay AA_make.gdef`" = "" ] ; then # Bidouille pour compiler sur ada des vieux modipsl.tar |
---|
| 717 | echo 'Warning jean-zay not in AA_make.gdef' |
---|
| 718 | echo 'Think about updating' |
---|
| 719 | exit 1 |
---|
| 720 | fi |
---|
| 721 | ./ins_make $o_ins_make |
---|
| 722 | # Compile IOIPSL on jean-zay |
---|
| 723 | cd $MODEL/modipsl/modeles/IOIPSL/src |
---|
[3610] | 724 | gmake > ioipsl.log |
---|
| 725 | cd $MODEL/modipsl/modeles/IOIPSL/tools |
---|
| 726 | gmake > ioipsl.log |
---|
[3573] | 727 | |
---|
| 728 | fi # of if [${hostname:0:5} = ada33 ] |
---|
[2030] | 729 | echo install.sh ioipsl_OK `date` |
---|
[1731] | 730 | fi # of if [ $ioipsl = 1 ] |
---|
[3044] | 731 | # Saving ioipsl lib for possible parallel compile |
---|
| 732 | cd $MODEL/modipsl |
---|
| 733 | tar cf ioipsl.tar lib/ bin/ |
---|
[1731] | 734 | |
---|
[3056] | 735 | #=========================================================================== |
---|
| 736 | if [ "$with_xios" = "y" ] ; then |
---|
| 737 | echo '##########################################################' |
---|
| 738 | echo 'Compiling XIOS' |
---|
| 739 | echo '##########################################################' |
---|
| 740 | cd $MODEL/modipsl/modeles |
---|
[3375] | 741 | xioslog=`pwd`/xios.log |
---|
| 742 | echo "log file: $xioslog" |
---|
[3056] | 743 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/install_xios.bash |
---|
[3076] | 744 | myget import/install_xios.bash |
---|
[3056] | 745 | chmod u=rwx install_xios.bash |
---|
[3375] | 746 | if [ ${hostname:0:5} = ada33 ] ; then |
---|
| 747 | ./install_xios.bash \ |
---|
| 748 | -prefix /workgpfs/rech/gzi/rgzi027/LMDZ20180221.trunk/modipsl/modeles \ |
---|
| 749 | -netcdf /smplocal/pub/NetCDF/4.1.3/mpi -hdf5 /smplocal/pub/HDF5/1.8.9/par \ |
---|
| 750 | -MPI /smplocal/intel/compilers_and_libraries_2017.2.174/linux/mpi/intel64/ \ |
---|
| 751 | -arch X64_ADA > xios.log 2>&1 |
---|
[3573] | 752 | elif [ ${hostname:0:5} = jean- ] ; then |
---|
| 753 | echo 'Need to work on install_xios implementation for jean-zay' |
---|
| 754 | exit |
---|
[3375] | 755 | else |
---|
| 756 | ./install_xios.bash -prefix $MODEL/modipsl/modeles \ |
---|
[3056] | 757 | -netcdf ${ncdfdir} -hdf5 ${ncdfdir} \ |
---|
[3375] | 758 | -MPI $root_mpi -arch $arch > xios.log 2>&1 |
---|
| 759 | fi |
---|
| 760 | if [ -f XIOS/lib/libxios.a ] ; then |
---|
| 761 | echo "OK, XIOS library successfully generated" |
---|
| 762 | fi |
---|
[3056] | 763 | fi |
---|
| 764 | |
---|
[1800] | 765 | #============================================================================ |
---|
[1837] | 766 | veget_version=false |
---|
[1731] | 767 | if [ "$veget" = 1 ] ; then |
---|
[3091] | 768 | cd $MODEL/modipsl/modeles/ORCHIDEE |
---|
[3610] | 769 | # Correctif suite debug Jean-Zay |
---|
| 770 | sed -i -e 's/9010 FORMAT(A52,F17.14)/9010 FORMAT(A52,F20.14)/' src_stomate/stomate.f90 |
---|
| 771 | opt_orc="-prod" ; if [ "$optim" = "-debug" ] ; then opt_orc="-debug" ; fi |
---|
| 772 | |
---|
[3091] | 773 | orchideelog=`pwd`/orchidee.log |
---|
[1731] | 774 | echo '########################################################' |
---|
| 775 | echo 'Compiling ORCHIDEE, the continental surfaces model ' |
---|
| 776 | echo '########################################################' |
---|
[3091] | 777 | echo log file : $orchideelog |
---|
[2430] | 778 | export ORCHPATH=`pwd` |
---|
| 779 | if [ -d tools ] ; then |
---|
[3386] | 780 | ################################################################### |
---|
| 781 | # Pour les experts qui voudraient changer de version d'orchidee. |
---|
| 782 | # Attention : necessite d'avoir le password pour orchidee |
---|
| 783 | set +e ; svn upgrade ; set -e |
---|
| 784 | if [ "$orchidee_rev" != "" ] ; then |
---|
| 785 | set +e ; svn update -r $orchidee_rev ; set -e |
---|
| 786 | fi |
---|
[3610] | 787 | # Correctif suite debug Jean-Zay |
---|
| 788 | if [ -f src_global/time.f90 ] ; then sed -i -e 's/CALL tlen2itau/\!CALL tlen2itau/' src_global/time.f90 ; fi |
---|
[3386] | 789 | ################################################################### |
---|
[1837] | 790 | veget_version=orchidee2.0 |
---|
[3044] | 791 | cd arch |
---|
[3088] | 792 | sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \ |
---|
| 793 | -e s:"%LINK .*.$":"%LINK $compiler":1 \ |
---|
[2430] | 794 | -e s:"%FPP_FLAGS .*.$":"%FPP_FLAGS $fpp_flags":1 \ |
---|
| 795 | -e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \ |
---|
| 796 | -e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \ |
---|
| 797 | -e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \ |
---|
[3044] | 798 | -e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \ |
---|
| 799 | -e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \ |
---|
[3076] | 800 | -e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \ |
---|
[2430] | 801 | arch-gfortran.fcm > arch-local.fcm |
---|
[3044] | 802 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path |
---|
[2430] | 803 | echo "NETCDF_INCDIR=${ncdfdir}/include" >> arch-local.path |
---|
| 804 | echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path |
---|
| 805 | echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path |
---|
[3375] | 806 | echo 'XIOS_INCDIR=${ORCHDIR}/../XIOS/inc' >> arch-local.path |
---|
| 807 | echo 'XIOS_LIBDIR="${ORCHDIR}/../XIOS/lib -lxios"' >> arch-local.path |
---|
[3044] | 808 | cd ../ |
---|
[2430] | 809 | # compiling ORCHIDEE sequential mode |
---|
[3610] | 810 | ./makeorchidee_fcm -j 8 -noxios $opt_orc -parallel none -arch $arch > $orchideelog 2>&1 |
---|
| 811 | echo ./makeorchidee_fcm -j 8 -noxios $opt_orc -parallel none -arch $arch |
---|
[3417] | 812 | echo End of the first compilation of orchidee ; pwd |
---|
[1800] | 813 | else |
---|
[2430] | 814 | if [ -d src_parallel ] ; then |
---|
| 815 | liste_src="parallel parameters global stomate sechiba driver" |
---|
| 816 | veget_version=orchidee2.0 |
---|
| 817 | else |
---|
| 818 | # Obsolete, for ORCHIDEE_beton only |
---|
| 819 | liste_src="parameters stomate sechiba " |
---|
| 820 | # A trick to compile ORCHIDEE depending on if we are using real*4 or real*8 |
---|
| 821 | cd src_parameters ; \cp reqdprec.$real reqdprec.f90 ; cd .. |
---|
| 822 | veget_version=orchidee1.9 |
---|
| 823 | fi |
---|
| 824 | for d in $liste_src ; do src_d=src_$d |
---|
| 825 | echo src_d $src_d |
---|
| 826 | echo ls ; ls |
---|
| 827 | if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi |
---|
[3044] | 828 | cd $src_d ; \rm -f *.mod make ; $make clean |
---|
[3091] | 829 | $make > $orchideelog 2>&1 ; if [ "$compiler" = "$gfortran" -o "$compiler" = "mpif90" ] ; then cp -f *.mod ../../../lib ; fi |
---|
[2430] | 830 | cd .. |
---|
| 831 | done |
---|
[1800] | 832 | fi |
---|
[2030] | 833 | echo install.sh orchidee_OK `date` |
---|
[1731] | 834 | fi # of if [ "$veget" = 1 ] |
---|
[1588] | 835 | |
---|
[2030] | 836 | |
---|
[1800] | 837 | #============================================================================ |
---|
[1588] | 838 | # Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file... |
---|
[3044] | 839 | if [ -d $MODEL/modipsl/modeles/LMD* ] ; then |
---|
[1588] | 840 | echo '##########################################################' |
---|
[1800] | 841 | echo 'Compiling LMDZ' |
---|
[1588] | 842 | echo '##########################################################' |
---|
[3044] | 843 | cd $MODEL/modipsl/modeles/LMD* |
---|
| 844 | LMDZPATH=`pwd` |
---|
[1588] | 845 | else |
---|
[3044] | 846 | echo "ERROR: No LMD* directory !!!" |
---|
[1800] | 847 | exit |
---|
[1588] | 848 | fi |
---|
| 849 | |
---|
| 850 | ########################################################### |
---|
[1708] | 851 | # For those who want to use fcm to compile via : |
---|
[1588] | 852 | # makelmdz_fcm -arch local ..... |
---|
| 853 | ############################################################ |
---|
| 854 | |
---|
[2031] | 855 | if [ "$pclinux" = "1" ] ; then |
---|
| 856 | |
---|
[1708] | 857 | # create local 'arch' files (if on Linux PC): |
---|
[1588] | 858 | cd arch |
---|
[1708] | 859 | # arch-local.path file |
---|
[3044] | 860 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdff -lnetcdf\"" > arch-local.path |
---|
[1590] | 861 | echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path |
---|
[1588] | 862 | echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
| 863 | echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
[3044] | 864 | echo 'XIOS_INCDIR=$LMDGCM/../XIOS/inc' >> arch-local.path |
---|
| 865 | echo 'XIOS_LIBDIR=$LMDGCM/../XIOS/lib' >> arch-local.path |
---|
[1588] | 866 | echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
| 867 | echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
[3044] | 868 | |
---|
[3375] | 869 | if [ $pcmac == 1 ] ; then |
---|
| 870 | BASE_LD="$BASE_LD -Wl,-rpath,${ncdfdir}/lib" |
---|
| 871 | else |
---|
| 872 | BASE_LD="$BASE_LD -Wl,-rpath=${ncdfdir}/lib" |
---|
| 873 | fi |
---|
| 874 | # Arch-local.fcm file (adapted from arch-linux-32bit.fcm) |
---|
[2031] | 875 | |
---|
| 876 | if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi |
---|
[3088] | 877 | sed -e s:"%COMPILER .*.$":"%COMPILER $compiler":1 \ |
---|
| 878 | -e s:"%LINK .*.$":"%LINK $compiler":1 \ |
---|
[2031] | 879 | -e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \ |
---|
| 880 | -e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \ |
---|
| 881 | -e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \ |
---|
| 882 | -e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \ |
---|
[2203] | 883 | -e s:"%FPP_DEF .*.$":"%FPP_DEF $FPP_DEF":1 \ |
---|
[3044] | 884 | -e s:"%BASE_LD .*.$":"%BASE_LD $BASE_LD":1 \ |
---|
[3076] | 885 | -e s:"%ARFLAGS .*.$":"%ARFLAGS $ARFLAGS":1 \ |
---|
[2031] | 886 | arch-linux-32bit.fcm > arch-local.fcm |
---|
| 887 | |
---|
[1588] | 888 | cd .. |
---|
[1708] | 889 | ### Adapt "bld.cfg" (add the shell): |
---|
[1588] | 890 | whereisthatshell=$(which ${use_shell}) |
---|
| 891 | echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg |
---|
| 892 | |
---|
[1731] | 893 | fi # of if [ "$pclinux" = 1 ] |
---|
| 894 | |
---|
| 895 | |
---|
[3056] | 896 | cd $MODEL/modipsl/modeles/LMDZ* |
---|
[3093] | 897 | lmdzlog=`pwd`/lmdz.log |
---|
[1731] | 898 | |
---|
[1588] | 899 | ################################################################## |
---|
[3056] | 900 | # Possibly update LMDZ if a specific svn release is requested |
---|
[3044] | 901 | ################################################################## |
---|
| 902 | |
---|
[3386] | 903 | set +e ; svn upgrade ; set -e |
---|
[3044] | 904 | if [ "$svn" = "last" ] ; then svnopt="" ; else svnopt="-r $svn" ; fi |
---|
[3386] | 905 | if [ "$svn" != "" ] ; then svn update $svnopt ; fi |
---|
[3044] | 906 | |
---|
[3091] | 907 | echo '##################################################################' |
---|
| 908 | echo Compile LMDZ |
---|
| 909 | echo '##################################################################' |
---|
| 910 | echo log file : $lmdzlog |
---|
[3044] | 911 | |
---|
[2030] | 912 | echo install.sh avant_compilation `date` |
---|
[3610] | 913 | if [ $compile_with_fcm = 1 ] ; then makelmdz="makelmdz_fcm $optim -arch $arch -j 8 " ; else makelmdz="makelmdz $optim -arch $arch" ; fi |
---|
[2031] | 914 | |
---|
[3044] | 915 | # use the orchidee interface that has no z0h |
---|
| 916 | if [ "$no_z0h_orc" = 1 ] ; then |
---|
| 917 | veget_version="$veget_version -cpp ORCHIDEE_NOZ0H" |
---|
| 918 | fi |
---|
| 919 | |
---|
| 920 | # sequential compilation and bench |
---|
| 921 | if [ "$sequential" = 1 ] ; then |
---|
[3610] | 922 | echo "./$makelmdz $optim $OPT_MAKELMDZ $optim -rrtm true $opt_cosp -d ${grid_resolution} -v $veget_version gcm " >> compile.sh |
---|
[3375] | 923 | chmod +x ./compile.sh |
---|
| 924 | if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi |
---|
[2030] | 925 | echo install.sh apres_compilation `date` |
---|
[1588] | 926 | |
---|
[2030] | 927 | |
---|
[3044] | 928 | fi # fin sequential |
---|
| 929 | |
---|
| 930 | |
---|
| 931 | |
---|
| 932 | # compiling in parallel mode |
---|
| 933 | if [ $parallel != "none" ] ; then |
---|
[3056] | 934 | echo '##########################################################' |
---|
| 935 | echo ' Parallel compile ' |
---|
| 936 | echo '##########################################################' |
---|
| 937 | # saving the sequential libs and binaries |
---|
| 938 | cd $MODEL/modipsl |
---|
| 939 | tar cf sequential.tar bin/ lib/ |
---|
| 940 | \rm -rf bin/ lib/ |
---|
| 941 | tar xf ioipsl.tar |
---|
| 942 | # |
---|
| 943 | # Orchidee |
---|
| 944 | # |
---|
| 945 | cd $ORCHPATH |
---|
[3386] | 946 | if [ -d src_parallel -a $veget = 1 ] ; then |
---|
[3044] | 947 | cd arch |
---|
| 948 | sed \ |
---|
| 949 | -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \ |
---|
| 950 | -e s:"%LINK.*.$":"%LINK $par_comp":1 \ |
---|
| 951 | -e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \ |
---|
| 952 | -e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \ |
---|
| 953 | -e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \ |
---|
| 954 | -e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \ |
---|
| 955 | arch-local.fcm > tmp.fcm |
---|
| 956 | |
---|
| 957 | mv tmp.fcm arch-local.fcm |
---|
| 958 | cd ../ |
---|
[3091] | 959 | echo compiling ORCHIDEE parallel mode |
---|
| 960 | echo logfile $orchideelog |
---|
[3610] | 961 | ./makeorchidee_fcm -j 8 -clean -noxios $opt_orc -parallel $parallel -arch $arch > $orchideelog 2>&1 |
---|
| 962 | ./makeorchidee_fcm -j 8 -noxios $opt_orc -parallel $parallel -arch $arch >> $orchideelog 2>&1 |
---|
| 963 | echo ./makeorchidee_fcm -j 8 -clean -noxios $opt_orc -parallel $parallel -arch $arch |
---|
| 964 | echo ./makeorchidee_fcm -j 8 -noxios $opt_orc -parallel $parallel -arch $arch |
---|
[3386] | 965 | elif [ $veget = 1 ] ; then |
---|
[3056] | 966 | echo '##########################################################' |
---|
| 967 | echo ' Orchidee version too old ' |
---|
| 968 | echo ' Please update to new version ' |
---|
| 969 | echo '##########################################################' |
---|
| 970 | exit |
---|
| 971 | fi # of if [ -d src_parallel ] |
---|
| 972 | # LMDZ |
---|
| 973 | cd $LMDZPATH |
---|
| 974 | if [ $arch = local ] ; then |
---|
| 975 | cd arch |
---|
| 976 | sed -e s:"%COMPILER.*.$":"%COMPILER $par_comp":1 \ |
---|
| 977 | -e s:"%LINK.*.$":"%LINK $par_comp":1 \ |
---|
| 978 | -e s:"%MPI_FFLAG.*.$":"%MPI_FFLAGS $MPI_FLAGS":1 \ |
---|
| 979 | -e s:"%OMP_FFLAG.*.$":"%OMP_FFLAGS $OMP_FLAGS":1 \ |
---|
[3076] | 980 | -e s:"%ARFLAGS.*.$":"%ARFLAGS $ARFLAGS":1 \ |
---|
[3056] | 981 | -e s@"%BASE_LD.*.$"@"%BASE_LD -Wl,-rpath=${root_mpi}/lib:${ncdfdir}/lib"@1 \ |
---|
| 982 | -e s:"%MPI_LD.*.$":"%MPI_LD $MPI_LD":1 \ |
---|
| 983 | -e s:"%OMP_LD.*.$":"%OMP_LD $OMP_LD":1 \ |
---|
| 984 | arch-local.fcm > tmp.fcm |
---|
| 985 | mv tmp.fcm arch-local.fcm |
---|
| 986 | cd ../ |
---|
| 987 | fi |
---|
| 988 | rm -f compile.sh |
---|
[3560] | 989 | if [ ${hostname:0:5} = ada33 ] ; then echo "module load intel/2017.2" > compile.sh ; fi |
---|
[3056] | 990 | echo resol=${grid_resolution} >> compile.sh |
---|
[3610] | 991 | echo ./$makelmdz $optim $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm >> compile.sh |
---|
| 992 | echo ./$makelmdz $optim $OPT_MAKELMDZ -rrtm true $opt_cosp $opt_makelmdz_xios -d \$resol -v $veget_version -mem -parallel $parallel gcm |
---|
[3375] | 993 | chmod +x ./compile.sh |
---|
| 994 | if [ $bench != 0 ] ; then ./compile.sh > $lmdzlog 2>&1 ; fi |
---|
[1588] | 995 | |
---|
[3056] | 996 | echo "Compilation finished" |
---|
| 997 | |
---|
| 998 | fi # of if [ $parallel != "none" ] |
---|
[3044] | 999 | |
---|
[3417] | 1000 | #echo LLLLLLLLLLLLLLLLLLLLLLLLLLL |
---|
[3044] | 1001 | if [ "$gfortran" = "gfortran44" ] ; then |
---|
| 1002 | echo Your gfortran compiler was too old so that the model was automatically |
---|
| 1003 | echo compiled with gfortran44 instead. It can not be used in parallel mode. |
---|
| 1004 | echo You can change the compiler at the begining of the install.sh |
---|
| 1005 | echo script and reinstall. |
---|
| 1006 | fi |
---|
| 1007 | |
---|
[1588] | 1008 | ################################################################## |
---|
[3044] | 1009 | # Verification du succes de la compilation |
---|
[1588] | 1010 | ################################################################## |
---|
[3044] | 1011 | |
---|
| 1012 | # Recherche de l'executable dont le nom a change au fil du temps ... |
---|
| 1013 | gcm="" |
---|
| 1014 | for exe in gcm.e bin/gcm_${grid_resolution}_phylmd_seq_orch.e bin/gcm_${grid_resolution}_phylmd_seq.e bin/gcm_${grid_resolution}_phylmd_para_mem_orch.e ; do |
---|
| 1015 | if [ -f $exe ] ; then gcm=$exe ; fi |
---|
| 1016 | done |
---|
| 1017 | |
---|
| 1018 | if [ "$gcm" = "" ] ; then |
---|
[3573] | 1019 | if [ $bench != 0 ] ; then |
---|
| 1020 | echo 'Compilation failed !! Cannot run the benchmark;' |
---|
| 1021 | exit |
---|
| 1022 | else |
---|
| 1023 | echo 'Compilation not done (only done when bench=1)' |
---|
| 1024 | fi |
---|
[3044] | 1025 | else |
---|
| 1026 | echo '##########################################################' |
---|
| 1027 | echo 'Compilation successfull !! ' |
---|
| 1028 | echo '##########################################################' |
---|
| 1029 | echo The executable is $gcm |
---|
[1588] | 1030 | fi |
---|
| 1031 | |
---|
[3044] | 1032 | ################################################################## |
---|
| 1033 | # Below, we run a benchmark test (if bench=0) |
---|
| 1034 | ################################################################## |
---|
| 1035 | |
---|
| 1036 | if [ $bench != 0 ] ; then |
---|
| 1037 | |
---|
[1588] | 1038 | echo '##########################################################' |
---|
[1731] | 1039 | echo ' Running a test run ' |
---|
[1588] | 1040 | echo '##########################################################' |
---|
| 1041 | |
---|
[2030] | 1042 | \rm -rf BENCH${grid_resolution} |
---|
[1588] | 1043 | bench=bench_lmdz_${grid_resolution} |
---|
[3417] | 1044 | echo install.sh before bench download `date` |
---|
[3044] | 1045 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/$bench.tar.gz |
---|
[3076] | 1046 | myget 3DBenchs/$bench.tar.gz |
---|
[3044] | 1047 | echo install.sh after bench download `date` |
---|
| 1048 | tar xvf $bench.tar.gz |
---|
[1588] | 1049 | |
---|
[3386] | 1050 | if [ "$cosp" = 1 -o "$cosp2" = 1 ] ; then |
---|
| 1051 | cd BENCH${grid_resolution} |
---|
| 1052 | # copier les fichiers namelist input et output our COSP |
---|
| 1053 | cp ../DefLists/cosp_input_nl.txt . |
---|
| 1054 | cp ../DefLists/cosp_output_nl.txt . |
---|
| 1055 | # Activer la cles ok_cosp pour tourner avec COSP |
---|
| 1056 | sed -e 's@ok_cosp=n@ok_cosp=y@' config.def > tmp |
---|
| 1057 | \mv -f tmp config.def |
---|
| 1058 | cd .. |
---|
| 1059 | fi |
---|
| 1060 | |
---|
[3056] | 1061 | if [ "$with_xios" = "y" ] ; then |
---|
| 1062 | cd BENCH${grid_resolution} |
---|
| 1063 | cp ../DefLists/iodef.xml . |
---|
| 1064 | cp ../DefLists/context_lmdz.xml . |
---|
| 1065 | cp ../DefLists/field_def_lmdz.xml . |
---|
| 1066 | cp ../DefLists/file_def_hist*xml . |
---|
| 1067 | # adapt iodef.xml to use attached mode |
---|
| 1068 | sed -e 's@"using_server" type="bool">true@"using_server" type="bool">false@' iodef.xml > tmp |
---|
| 1069 | \mv -f tmp iodef.xml |
---|
[3386] | 1070 | |
---|
[3056] | 1071 | # and convert all the enabled="_AUTO_" (for libIGCM) to enabled=.FALSE. |
---|
| 1072 | # except for histday |
---|
| 1073 | for histfile in file_def_hist*xml |
---|
| 1074 | do |
---|
| 1075 | if [ "$histfile" = "file_def_histday_lmdz.xml" ] ; then |
---|
| 1076 | sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".TRUE."@' $histfile > tmp ; \mv -f tmp $histfile |
---|
[3560] | 1077 | sed -e 's@output_level="_AUTO_"@output_level="5"@' $histfile > tmp ; \mv -f tmp $histfile |
---|
| 1078 | sed -e 's@compression_level="2"@compression_level="0"@' $histfile > tmp ; \mv -f tmp $histfile |
---|
[3056] | 1079 | else |
---|
| 1080 | sed -e 's@enabled="_AUTO_"@type="one_file" enabled=".FALSE."@' $histfile > tmp ; \mv -f tmp $histfile |
---|
| 1081 | fi |
---|
| 1082 | done |
---|
| 1083 | # and add option "ok_all_xml=y" in config.def |
---|
| 1084 | echo "### XIOS outputs" >> config.def |
---|
| 1085 | echo 'ok_all_xml=.true.' >> config.def |
---|
| 1086 | cd .. |
---|
| 1087 | fi |
---|
| 1088 | |
---|
[3044] | 1089 | cp $gcm BENCH${grid_resolution}/gcm.e |
---|
[1588] | 1090 | |
---|
| 1091 | cd BENCH${grid_resolution} |
---|
[3044] | 1092 | # On cree le fichier bench.sh au besoin |
---|
| 1093 | # Dans le cas 48x36x39 le bench.sh existe deja en parallele |
---|
[1588] | 1094 | |
---|
[3044] | 1095 | if [ "$grid_resolution" = "48x36x39" ] ; then |
---|
| 1096 | echo On ne touche pas au bench.sh |
---|
| 1097 | # But we have to adapt "run_local.sh" for $mpirun |
---|
| 1098 | sed -e "s@mpirun@$mpirun@g" run_local.sh > tmp |
---|
| 1099 | mv -f tmp run_local.sh |
---|
| 1100 | chmod u=rwx run_local.sh |
---|
| 1101 | elif [ "${parallel:0:3}" = "mpi" ] ; then |
---|
| 1102 | # Lancement avec deux procs mpi et 2 openMP |
---|
| 1103 | echo "export OMP_STACKSIZE=800M" > bench.sh |
---|
| 1104 | if [ "${parallel:4:3}" = "omp" ] ; then |
---|
| 1105 | echo "export OMP_NUM_THREADS=2" >> bench.sh |
---|
| 1106 | fi |
---|
| 1107 | echo "ulimit -s unlimited" >> bench.sh |
---|
[3573] | 1108 | if [ ${hostname:0:5} = jean- ] ; then |
---|
| 1109 | echo "srun -n 2 -A $idris_acct@cpu gcm.e > listing 2>&1" >> bench.sh |
---|
| 1110 | else |
---|
| 1111 | echo "$mpirun -np 2 gcm.e > listing 2>&1" >> bench.sh |
---|
| 1112 | fi |
---|
[3044] | 1113 | else |
---|
| 1114 | echo "./gcm.e > listing 2>&1" > bench.sh |
---|
| 1115 | fi |
---|
| 1116 | echo EXECUTION DU BENCH |
---|
[3076] | 1117 | set +e |
---|
[3044] | 1118 | date ; ./bench.sh > out.bench 2>&1 ; date |
---|
[3076] | 1119 | set -e |
---|
[3044] | 1120 | tail listing |
---|
[2030] | 1121 | |
---|
[1588] | 1122 | |
---|
| 1123 | echo '##########################################################' |
---|
[1708] | 1124 | echo 'Simulation finished in' `pwd` |
---|
[3044] | 1125 | echo 'You have compiled with:' |
---|
| 1126 | cat ../compile.sh |
---|
| 1127 | if [ $parallel = "none" ] ; then |
---|
| 1128 | echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e' |
---|
| 1129 | echo 'or ./bench.sh' |
---|
| 1130 | else |
---|
| 1131 | echo 'You may re-run it with : ' |
---|
| 1132 | echo 'cd ' `pwd` '; ./bench.sh' |
---|
[3573] | 1133 | # echo 'ulimit -s unlimited' |
---|
| 1134 | # echo 'export OMP_NUM_THREADS=2' |
---|
| 1135 | # echo 'export OMP_STACKSIZE=800M' |
---|
| 1136 | # echo "$mpirun -np 2 gcm.e " |
---|
[3044] | 1137 | fi |
---|
[1588] | 1138 | echo '##########################################################' |
---|
[2030] | 1139 | |
---|
| 1140 | fi |
---|
[3044] | 1141 | |
---|
| 1142 | |
---|
| 1143 | ################################################################# |
---|
| 1144 | # Installation eventuelle du 1D |
---|
| 1145 | ################################################################# |
---|
| 1146 | |
---|
| 1147 | if [ $SCM = 1 ] ; then |
---|
| 1148 | cd $MODEL |
---|
| 1149 | #wget http://www.lmd.jussieu.fr/~lmdz/Distrib/1D.tar.gz |
---|
[3076] | 1150 | myget 1D/1D.tar.gz |
---|
[3044] | 1151 | tar xvf 1D.tar.gz |
---|
| 1152 | cd 1D |
---|
| 1153 | ./run.sh |
---|
| 1154 | fi |
---|