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source: BOL/script_install/install.sh @ 1771

Last change on this file since 1771 was 1731, checked in by Ehouarn Millour, 12 years ago
Update of "install.sh" script to make it work on Ada. EM
File size: 22.6 KB

Line
1	#!/bin/bash
2
3	###########################################################################
4	# Author : Frédéric Hourdin/LMD/hourdin@lmd.jussieu.fr
5	# Usage : install.sh
6	#
7	# bash installation script of the LMDZ model on a Linux PC.
8	# the model is downloaded in the following direcory tree
9	# $MODEL/modipsl/modeles/...
10	# using the "modipsl" infrastructure created by the "IPSL"
11	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
12	# activities.
13	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
14	# components.
15	#
16	# The sources of the models can be found in the "modeles" directory.
17	# In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs
18	# using the NetCDF library.
19	#
20	# The script downloads various source files (including a version of NetCDF)
21	# and utilities, compiles the model, and runs a test simulation in a
22	# munimal configuration.
23	#
24	# Prerequisites : g95/pgf90/gfortran, ksh, wget , gunzip, tar, ...
25	#
26	# Modif 18/11/2011
27	# changes for option real 8.
28	# We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
29	# but with -r4 for netcdf. Variable real must be set to
30	# r4 or r8 at the beginning of the script below.
31	#
32	###########################################################################
33
34	echo '################################################################'
35	echo Choice of installation options
36	echo '################################################################'
37
38
39	#real=r4
40	real=r8
41
42	# WARNING !!!! For versions before october 2009, use
43	# install.v2.sh instead of install.sh
44
45	#version=20110921.trunk
46	version=testing
47
48	#Chemin pour placer le modele
49	MODEL=./LMDZ$version
50
51	getlmdzor=1
52	netcdf=1 # 1 for automatic installation
53	# 0 for no installation
54	# /.../../netcdf-4.0.1 if wanting to link with an already
55	# compiled netcdf library (implies to check option compatibility)
56	check_linux=1
57	ioipsl=1
58	veget=1
59	bench=1
60	pclinux=1
61	compilo=gfortran # compilo=pgf90 or g95 or gfortran or ifort sur PC linux
62
63
64	#####################################################################
65	# Test for old gfortran compilers
66	if [ $compilo = gfortran ] ; then
67	gfortranv=`gfortran --version \| \
68	head -1 \| awk ' { print $NF } ' \| awk -F. ' { print $1 * 10 + $2 } '`
69	if [ $gfortranv -le 43 ] ; then
70	echo ERROR : Your gfortran compiler is too old
71	echo 'Please choose a new one (g95, ifort) and change the line'
72	echo compilo=xxx
73	echo in the install.sh script and rerun it
74	exit
75	fi
76	fi
77	#####################################################################
78
79
80
81	## compile_with_fcm=1 : use makelmdz_fcm, possible a of version 20111103.trunk (LMDZ5/trunk rev 1578)
82	## compile_with_fcm=0 : use makegcm
83	compile_with_fcm=1
84
85	OPTPREC=""
86	echo '################################################################'
87	echo Choix des options de compilation
88	echo '################################################################'
89
90	if [ $compilo = g95 ] ; then
91	if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi
92	OPTIM='-i4 -O3'
93	elif [ $compilo = gfortran ] ; then
94	if [ $real = r8 ] ; then OPTPREC="-fdefault-real-8 -DNC_DOUBLE" ; fi
95	OPTIM='-O3'
96	elif [ $compilo = pgf90 ] ; then
97	if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi
98	OPTIM='-O2 -Munroll -Mnoframe -Mautoinline -Mcache_align'
99	# with pgf90, compile with fcm
100	compile_with_fcm=1
101	else
102	# ifort
103	if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi
104	OPTIM="-O2 -fp-model strict -ip -align all "
105	# with ifort, compile with fcm
106	compile_with_fcm=1
107	fi
108	OPTIMGCM="$OPTIM $OPTPREC"
109
110	# choose the resolution for the bench runs
111	# grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE)
112	# 96x71x19 standard configuration
113	grid_resolution=48x36x19
114
115	hostname=`hostname`
116
117	##########################################################################
118	# If installing on know machines such as IBM x3750 (Ada)
119	# at IDRIS, don't check for available software and don"t install netcdf
120	if [ $hostname = ada338 ] ; then
121	netcdf=0 # no need to recompile netcdf, alreday available
122	check_linux=0
123	pclinux=0
124	ioipsl=0 # no need to recompile ioipsl, already available
125	#netcdf="/smplocal/pub/NetCDF/4.1.3"
126	compilo="ifort"
127	fmod='module '
128	if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi
129	OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all "
130	OPTIMGCM="$OPTIM $OPTPREC"
131	fi
132	##########################################################################
133
134
135	mkdir -p $MODEL
136	echo $MODEL
137	MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary
138
139
140
141	# Option -fendian=big is only to be used with ARPEGE1D.
142	# The -r8 should probably be avoided if running on 32 bit machines
143	# Option r8 is not mandatory and generates larger executables.
144	# It is however mandatory if using ARPEGE1D
145	# Better optimization options might be a better choice (e.g. -O3)
146
147
148	echo '################################################################'
149	if [ "$check_linux" = 1 ] ; then
150	echo Check if required software is available
151	echo '################################################################'
152
153	#### Ehouarn: test if ksh and/or bash are available
154	use_shell="ksh" # default: use ksh
155	if [ "`which ksh`" = "" ] ; then
156	echo "no ksh ... we will use bash"
157	use_shell="bash"
158	if [ "`which bash`" = "" ] ; then
159	echo "ksh (or bash) needed!! Install it!"
160	fi
161	fi
162
163
164	for logiciel in csh wget tar gzip make $compilo gcc ; do
165	if [ "`which $logiciel`" = "" ] ; then
166	echo You must first install $logiciel on your system
167	exit
168	fi
169	done
170
171	if [ $pclinux = 1 ] ; then
172	cd $MODEL
173	cat <<eod> tt.f90
174	print*,'coucou'
175	end
176	eod
177	$compilo tt.f90 -o a.out
178	./a.out >\| tt
179	if [ "`cat tt \| sed -e 's/ //g' `" != "coucou" ] ; then
180	echo problem installing with compiler $compilo ; exit ; fi
181	\rm tt a.out tt.f90
182	fi
183	fi
184
185	###########################################################################
186
187
188
189	if [ $getlmdzor = 1 ] ; then
190	echo '##########################################################'
191	echo Download a slightly modified version of LMDZ
192	echo '##########################################################'
193	cd $MODEL
194	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/modipsl.$version.tar.gz
195	gunzip modipsl.$version.tar.gz
196	tar xvf modipsl.$version.tar
197	\rm modipsl.$version.tar
198
199	# We download LMDZ and make some modifications to make it
200	#compatible with $compilo
201	# and we use an old stable but robust and well tested version of ORCHIDEE
202	# That version of ORCHIDEE can be obtained using
203	# wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/getlmdzor.x
204	fi
205
206	echo OK1
207
208	if [ $netcdf = 1 ] ; then
209	echo '##########################################################'
210	echo Compiling the Netcdf library
211	echo '##########################################################'
212	cd $MODEL
213	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/netcdf-4.0.1.tar.gz
214	gunzip netcdf-4.0.1.tar.gz
215	tar xvf netcdf-4.0.1.tar
216	\rm -f netcdf-4.0.1.tar
217
218	cd netcdf-4.0.1
219
220	OPTIMNC=$OPTIM
221	if [ $compilo = g95 ] ; then
222	# Set the appropriate compilation options
223	export FC=g95
224	export F90=g95
225	export F90FLAGS=" -cpp -ffree-form $OPTIMNC"
226	export FFLAGS=" -cpp $OPTIMNC"
227	export CPPFLAGS=-Df2cFortran
228	export CC=gcc
229	export CXX=g++
230	elif [ $compilo = gfortran ] ; then
231	export FC=gfortran
232	export F90=gfortran
233	export F90FLAGS=" -ffree-form $OPTIMNC"
234	export FFLAGS=" $OPTIMNC"
235	export CPPFLAGS=
236	export CC=gcc
237	export CXX=g++
238	elif [ $compilo = pgf90 ] ; then
239	export CPPFLAGS="-DNDEBUG -DpgiFortran"
240	export CC=pgcc
241	export CFLAGS="-Msignextend"
242	export CXX=pgCC
243	export CXXFLAGS="-Msignextend"
244	export FC=pgf90
245	export FFLAGS="$OPTIMNC"
246	export F90=pgf90
247	export F90FLAGS="$OPTIMNC"
248	elif [ $compilo = ifort ] ; then
249	export CPP="icc -E"
250	export F77=ifort
251	export FFLAGS="-O2 -ip -fpic -mcmodel=large"
252	export F90=ifort
253	export FCFLAGS="-O2 -ip -fpic -mcmodel=large"
254	export CC=icc
255	export CFLAGS="-O2 -ip -fpic -mcmodel=large"
256	export CXX=icpc
257	export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
258	else
259	echo unexpected compiler $compilo ; exit
260	fi
261	## end of if [ $netcdf = 1 ]
262	#cd src
263
264	### Correction d'un petit probleme de netcdf
265	##sed -e '83s/^$/\#define f2cFortran/' cfortran.h >\| tmp ; \mv tmp cfortran.h
266
267	# Compilation
268	# Modif du 6 juillet 2009. Plantage quand on essaie de compiler netcdf avec
269	# gcc plutÃ´t que c++
270	##sed -e 's/ c++/ gcc/g' configure >\| tmp ; mv -f tmp configure ; chmod +x configure
271	localdir=`pwd -P`
272	./configure --prefix=$localdir
273	make check
274	make install
275	fi # of if [ $netcdf = 1 ]
276
277	echo OK2 ioipsl=$ioipsl
278	echo '##########################################################'
279	echo 'Installing MODIPSL, the installation package manager for the '
280	echo 'IPSL models and tools'
281	echo '##########################################################'
282
283	if [ $netcdf = 0 -o $netcdf = 1 ] ; then
284	ncdfdir=$MODEL/netcdf-4.0.1
285	else
286	ncdfdir=$netcdf
287	fi
288
289	if [ $ioipsl = 1 ] ; then
290	cd $MODEL/modipsl
291	\rm -r lib/*
292
293	cd util
294
295	if [ $compilo = pgf90 ] ; then
296	fmod='module '
297	elif [ $compilo = g95 ] ; then
298	fmod='fmod='
299	elif [ $compilo = ifort ] ; then
300	fmod='module '
301	else # gfortran
302	fmod='I '
303	fi
304	cp AA_make.gdef AA_make.orig
305	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
306	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \
307	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
308	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= '"$ncdfdir"'/include:' \
309	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdf:' \
310	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
311	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
312	tmp >\| AA_make.gdef
313
314
315	if [ "$use_shell" = "ksh" ] ; then
316	if [ "$pclinux" = 1 ] ; then
317	./ins_make -t g95 # We use lines for g95 even for the other compilers
318	fi
319	else # bash
320	sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash
321	chmod u=rwx ins_make.bash
322	if [ "$pclinux" = 1 ] ; then
323	./ins_make.bash -t g95 # We use lines for g95 even for the other compilers
324	else
325	./ins_make.bash
326	fi
327	fi # of if [ "$use_shell" = "ksh" ]
328
329	echo '##########################################################'
330	echo 'Compiling IOIPSL, the interface library with Netcdf'
331	echo '##########################################################'
332
333	cd $MODEL/modipsl/modeles/IOIPSL/src
334	if [ "$use_shell" = "bash" ] ; then
335	cp Makefile Makefile.ksh
336	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
337	fi
338	if [ "$pclinux" = 1 ] ; then
339	# Build IOIPSL modules and library
340	make clean
341	make
342	if [ $compilo = gfortran ] ; then # copy module files to lib
343	cp -f *.mod ../../../lib
344	fi
345	# Build IOIPSL tools (ie: "rebuild", if present)
346	if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then
347	cd $MODEL/modipsl/modeles/IOIPSL/tools
348	# adapt Makefile & rebuild script if in bash
349	if [ "$use_shell" = "bash" ] ; then
350	cp Makefile Makefile.ksh
351	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
352	cp rebuild rebuild.ksh
353	sed -e 's:/bin/ksh:/bin/bash:g' \
354	-e 's:print -u2:echo:g' \
355	-e 's:print:echo:g' rebuild.ksh > rebuild
356	fi
357	make clean
358	make
359	fi
360	fi # of if [ "$pclinux" = 1 ]
361
362	else # of if [ $ioipsl = 1 ]
363	if [ $hostname = ada338 ] ; then
364	cd $MODEL/modipsl
365	cd util
366
367	cp AA_make.gdef AA_make.orig
368	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
369	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \
370	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
371	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= -I/smplocal/pub/HDF5/1.8.9/seq/include -I/smplocal/pub/NetCDF/4.1.3/include:' \
372	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L/smplocal/pub/NetCDF/4.1.3/lib -lnetcdff -lnetcdf:' \
373	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
374	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
375	tmp >\| AA_make.gdef
376
377	./ins_make -t g95 # We use lines for g95 even for the other compilers
378
379	# on Ada, IOIPSL is already installed in ~rpsl035/IOIPSL_PLUS
380	# so link it to current settings
381	cd $MODEL/modipsl/modeles/
382	\rm -r -f IOIPSL
383	ln -s ~rpsl035/IOIPSL_PLUS IOIPSL
384	cd ..
385	ln -s ~rpsl035/IOIPSL_PLUS/modipsl/bin/* bin/
386	ln -s ~rpsl035/IOIPSL_PLUS/modipsl/lib/* lib/
387
388	fi # of if [ $hostname = ada338 ]
389	fi # of if [ $ioipsl = 1 ]
390
391	if [ "$veget" = 1 ] ; then
392	echo '########################################################'
393	echo 'Compiling ORCHIDEE, the continental surfaces model '
394	echo '########################################################'
395	cd $MODEL/modipsl/modeles/ORCHIDEE
396	cd src_parameters
397	# A trick to compile ORCHIDEE depending on if we are using real4 or real8
398
399	\cp reqdprec.$real reqdprec.f90
400	make
401	if [ $compilo = gfortran ] ; then # copy module files to lib
402	cp -f *.mod ../../../lib
403	fi
404	cd ../src_stomate
405	make
406	if [ $compilo = gfortran ] ; then # copy module files to lib
407	cp -f *.mod ../../../lib
408	fi
409	cd ../src_sechiba
410	make
411	if [ $compilo = gfortran ] ; then # copy module files to lib
412	cp -f *.mod ../../../lib
413	fi
414	fi # of if [ "$veget" = 1 ]
415
416	# Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file...
417	if [[ -d $MODEL/modipsl/modeles/LMDZ4 ]] ; then
418	echo '##########################################################'
419	echo 'Compiling LMDZ4'
420	echo '##########################################################'
421	cd $MODEL/modipsl/modeles/LMDZ4
422	else
423	if [[ -d $MODEL/modipsl/modeles/LMDZ5 ]] ; then
424	echo '##########################################################'
425	echo 'Compiling LMDZ5'
426	echo '##########################################################'
427	cd $MODEL/modipsl/modeles/LMDZ5
428	else
429	echo "ERROR: No LMDZ4 (or LMDZ5) directory !!!"
430	exit
431	fi
432	fi
433
434	##########################################################
435	# Traitement momentanne a cause d'un bug dans makegcm
436	cp create_make_gcm create_make_gcm.orig
437	nl=`sed -n -e /PROGRAM/= create_make_gcm.orig \| tail -1`
438	sed -e "$nl s/ PROGRA/PROGRA/" create_make_gcm.orig >\| create_make_gcm
439
440	#mv -f tmp crea
441	if [ "$pclinux" = 1 ] ; then
442	if [ $compilo = gfortran ] ; then
443	sed \
444	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
445	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
446	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
447	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
448	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
449	-e 's/g95/gfortran/g' \
450	-e 's/-fmod=/-I/g' \
451	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
452	-e 's/-lparallel//' \
453	-e 's/-lnetcdff//g' \
454	-e 's/-lorglob//' \
455	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
456	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
457	elif [ $compilo = ifort ] ; then
458	sed \
459	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
460	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
461	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
462	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
463	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
464	-e 's/g95/ifort/g' \
465	-e 's/-fmod=/-module /g' \
466	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
467	-e 's/-lparallel//' \
468	-e 's/-lnetcdff//g' \
469	-e 's/-lorglob//' \
470	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
471	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
472	else # g95 or pgf90
473	sed \
474	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
475	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
476	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
477	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
478	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
479	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
480	-e 's/-lparallel//' \
481	-e 's/-lnetcdff//g' \
482	-e 's/-lorglob//' \
483	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
484	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
485	fi
486	else
487	sed \
488	-e 's/-lparallel//' \
489	-e 's/-lorglob//' \
490	-e 's/-lsxorglob//' \
491	-e 's/-lsxparallel//' \
492	-e 's/-lsxioipsl/-lioipsl/g' \
493	makegcm.orig >\| makegcm
494	fi
495
496	chmod +x makegcm
497
498	###########################################################
499	# For those who want to use fcm to compile via :
500	# makelmdz_fcm -arch local .....
501	############################################################
502
503	if [ "$pclinux" = 1 ] ; then
504	# create local 'arch' files (if on Linux PC):
505	cd arch
506	# arch-local.path file
507	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdf\"" > arch-local.path
508	echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
509	echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path
510	echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
511	echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path
512	echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
513	# arch-local.fcm file (adapted from arch-linux-32bit.fcm)
514	if [ $compilo = g95 ] ; then
515	sed -e s:"%COMPILER pgf95":"%COMPILER g95":1 \
516	-e s:"%LINK pgf95":"%LINK g95":1 \
517	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
518	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -g -O1 -Wall":1 \
519	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g -O0 -Wall -ftrace=full -fbounds-check -freal=nan":1 \
520	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
521	arch-linux-32bit.fcm > arch-local.fcm
522	if [ $real = r8 ] ; then
523	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
524	arch-local.fcm > arch-local.fcm.new
525	mv -f arch-local.fcm.new arch-local.fcm
526	fi
527	elif [ $compilo = gfortran ] ; then
528	sed -e s:"%COMPILER pgf95":"%COMPILER gfortran":1 \
529	-e s:"%LINK pgf95":"%LINK gfortran":1 \
530	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
531	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -Wall -fbounds-check":1 \
532	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all":1 \
533	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
534	arch-linux-32bit.fcm > arch-local.fcm
535	if [ $real = r8 ] ; then
536	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
537	arch-local.fcm > arch-local.fcm.new
538	mv -f arch-local.fcm.new arch-local.fcm
539	fi
540	elif [ $compilo = pgf90 ] ; then
541	sed -e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \
542	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
543	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
544	arch-linux-32bit.fcm > arch-local.fcm
545	if [ $real = r8 ] ; then
546	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
547	arch-local.fcm > arch-local.fcm.new
548	mv -f arch-local.fcm.new arch-local.fcm
549	fi
550	elif [ $compilo = ifort ] ; then
551	sed -e s:"%COMPILER pgf95":"%COMPILER ifort":1 \
552	-e s:"%LINK pgf95":"%LINK ifort":1 \
553	-e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \
554	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
555	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
556	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -p -g -O2 -traceback -fp-stack-check -ftrapuv -check":1 \
557	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g -no-ftz -traceback -ftrapuv -fp-stack-check -check":1 \
558	arch-linux-32bit.fcm > arch-local.fcm
559	if [ $real = r8 ] ; then
560	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
561	arch-local.fcm > arch-local.fcm.new
562	mv -f arch-local.fcm.new arch-local.fcm
563	fi
564	else
565	echo Unexpected compiler $compilo ; exit
566	fi # of if [ $compilo = g95 ] elif [ $compilo = pgf90 ]
567	cd ..
568	### Adapt "bld.cfg" (add the shell):
569	whereisthatshell=$(which ${use_shell})
570	echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg
571
572	fi # of if [ "$pclinux" = 1 ]
573
574
575	cd $MODEL/modipsl/modeles/LMDZ?
576
577	### Modify makelmdz_fcm and makelmdz to use ORCHIDEE in the bench:
578	### remove liborglob.a and libparallel.a
579	cp makelmdz_fcm makelmdz_fcm.orig
580	sed -e "s/-l\${LIBPREFIX}parallel//" \
581	sed -e "s/-l\${LIBPREFIX}orglob//" \
582	makelmdz_fcm.orig > makelmdz_fcm
583	cp makelmdz makelmdz.orig
584	sed -e "s/-l\${LIBPREFIX}parallel//" \
585	sed -e "s/-l\${LIBPREFIX}orglob//" \
586	makelmdz.orig > makelmdz
587
588
589	##################################################################
590	# Compile LMDZ
591	##################################################################
592	ok_veget=false
593	if [ "$veget" = 1 ] ; then $ok_veget = true ; fi
594	if [ $compile_with_fcm = 1 ] ; then
595	# Compile with makelmdz_fcm
596	if [ "$pclinux" = 1 ] ; then
597	./makelmdz_fcm -d ${grid_resolution} -arch local -v $ok_veget gcm
598	else
599	# we are on Ada
600	./makelmdz_fcm -d ${grid_resolution} -arch X64_ADA -v $ok_veget gcm
601	fi
602	else
603	# Comple with makegcm:
604	# 3 times! because some dependecies are not well resolved with makegcm
605	./makegcm -d ${grid_resolution} -v $ok_veget gcm
606	./makegcm -d ${grid_resolution} -v $ok_veget gcm
607	./makegcm -d ${grid_resolution} -v $ok_veget gcm
608	fi
609
610	if [ -f gcm.e ] \|\| [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] \|\| [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then
611	echo '##########################################################'
612	echo 'Compilation successfull !! '
613	echo '##########################################################'
614	else
615	echo 'Compilation failed !!'
616	exit
617	fi
618
619	##################################################################
620	# Below, we run a benchmark test (if bench=0)
621	##################################################################
622	if [ $bench = 0 ] ; then
623	exit
624	fi
625
626	echo '##########################################################'
627	echo ' Running a test run '
628	echo '##########################################################'
629
630	\rm -r BENCH${grid_resolution}
631	bench=bench_lmdz_${grid_resolution}
632	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/$bench.tar.gz
633	gunzip $bench.tar.gz
634	tar xvf $bench.tar
635
636	if [ -f gcm.e ] ; then
637	cp gcm.e BENCH${grid_resolution}/
638	elif [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] ; then
639	cp bin/gcm_${grid_resolution}_phylmd_seq_orch.e BENCH${grid_resolution}/gcm.e
640	elif [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then
641	cp bin/gcm_${grid_resolution}_phylmd_seq.e BENCH${grid_resolution}/gcm.e
642	else
643	echo "No gcm.e found"
644	exit
645	fi
646
647	cd BENCH${grid_resolution}
648	./bench.sh > bench.out 2>&1
649
650	echo '##########################################################'
651	echo ' Bench results '
652	echo '##########################################################'
653
654	cat ./bench.out
655
656	echo '##########################################################'
657	echo 'Simulation finished in' `pwd`
658	echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e'
659	echo 'or ./bench.sh'
660	echo '##########################################################'
661

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