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source: BOL/script_install/install.sh @ 1849

Last change on this file since 1849 was 1837, checked in by Laurent Fairhead, 11 years ago

Modifications pour pouvoir compiler avec les différentes versions de ORCHIDEE

Modifications needed for compilation with the different versions of ORCHIDEE

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File size: 22.2 KB

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1	#!/bin/bash
2
3	###########################################################################
4	# Author : Frédéric Hourdin/LMD/hourdin@lmd.jussieu.fr
5	# Usage : install.sh
6	#
7	# bash installation script of the LMDZ model on a Linux PC.
8	# the model is downloaded in the following direcory tree
9	# $MODEL/modipsl/modeles/...
10	# using the "modipsl" infrastructure created by the "IPSL"
11	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
12	# activities.
13	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
14	# components.
15	#
16	# The sources of the models can be found in the "modeles" directory.
17	# In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs
18	# using the NetCDF library.
19	#
20	# The script downloads various source files (including a version of NetCDF)
21	# and utilities, compiles the model, and runs a test simulation in a
22	# munimal configuration.
23	#
24	# Prerequisites : g95/pgf90/gfortran, ksh, wget , gunzip, tar, ...
25	#
26	# Modif 18/11/2011
27	# changes for option real 8.
28	# We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
29	# but with -r4 for netcdf. Variable real must be set to
30	# r4 or r8 at the beginning of the script below.
31	#
32	###########################################################################
33
34	echo '################################################################'
35	echo Choice of installation options
36	echo '################################################################'
37
38
39	#real=r4
40	real=r8
41
42	# WARNING !!!! For versions before october 2009, use
43	# install.v2.sh instead of install.sh
44
45	version=20130716.trunk
46	version=testing
47
48	#Chemin pour placer le modele
49	MODEL=./LMDZ$version
50
51	getlmdzor=1
52	netcdf=1 # 1 for automatic installation
53	# 0 for no installation
54	# /.../../netcdf-4.0.1 if wanting to link with an already
55	# compiled netcdf library (implies to check option compatibility)
56	check_linux=1
57	ioipsl=1
58	veget=1
59	bench=1
60	pclinux=1
61	compilo=gfortran # compilo=pgf90 or g95 or gfortran or ifort sur PC linux
62
63
64	#####################################################################
65	# Test for old gfortran compilers
66	if [ $compilo = gfortran ] ; then
67	gfortranv=`gfortran --version \| \
68	head -1 \| awk ' { print $NF } ' \| awk -F. ' { print $1 * 10 + $2 } '`
69	if [ $gfortranv -le 43 ] ; then
70	echo ERROR : Your gfortran compiler is too old
71	echo 'Please choose a new one (g95, ifort) and change the line'
72	echo compilo=xxx
73	echo in the install.sh script and rerun it
74	exit
75	fi
76	fi
77	#####################################################################
78
79
80
81	## compile_with_fcm=1 : use makelmdz_fcm, possible a of version 20111103.trunk (LMDZ5/trunk rev 1578)
82	## compile_with_fcm=0 : use makelmdz
83	compile_with_fcm=0
84
85	OPTPREC=""
86	echo '################################################################'
87	echo Choix des options de compilation
88	echo '################################################################'
89
90	if [ $compilo = g95 ] ; then
91	if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi
92	OPTIM='-i4 -O3'
93	elif [ $compilo = gfortran ] ; then
94	if [ $real = r8 ] ; then OPTPREC="-fdefault-real-8 -DNC_DOUBLE" ; fi
95	OPTIM='-O3'
96	elif [ $compilo = pgf90 ] ; then
97	if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi
98	OPTIM='-O2 -Munroll -Mnoframe -Mautoinline -Mcache_align'
99	# with pgf90, compile with fcm
100	compile_with_fcm=1
101	else
102	# ifort
103	if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi
104	OPTIM="-O2 -fp-model strict -ip -align all "
105	# with ifort, compile with fcm
106	compile_with_fcm=1
107	fi
108	OPTIMGCM="$OPTIM $OPTPREC"
109
110	# choose the resolution for the bench runs
111	# grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE)
112	# 96x71x19 standard configuration
113	grid_resolution=48x36x19
114
115	hostname=`hostname`
116
117	##########################################################################
118	# If installing on know machines such as IBM x3750 (Ada)
119	# at IDRIS, don't check for available software and don"t install netcdf
120	if [ ${hostname:0:5} = ada33 ] ; then
121	netcdf=0 # no need to recompile netcdf, alreday available
122	check_linux=0
123	pclinux=0
124	ioipsl=0 # no need to recompile ioipsl, already available
125	#netcdf="/smplocal/pub/NetCDF/4.1.3"
126	compilo="ifort"
127	fmod='module '
128	if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi
129	OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all "
130	OPTIMGCM="$OPTIM $OPTPREC"
131	fi
132	##########################################################################
133
134
135	mkdir -p $MODEL
136	echo $MODEL
137	MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary
138
139
140
141	# Option -fendian=big is only to be used with ARPEGE1D.
142	# The -r8 should probably be avoided if running on 32 bit machines
143	# Option r8 is not mandatory and generates larger executables.
144	# It is however mandatory if using ARPEGE1D
145	# Better optimization options might be a better choice (e.g. -O3)
146
147
148	echo '################################################################'
149	if [ "$check_linux" = 1 ] ; then
150	echo Check if required software is available
151	echo '################################################################'
152
153	#### Ehouarn: test if ksh and/or bash are available
154	use_shell="ksh" # default: use ksh
155	if [ "`which ksh`" = "" ] ; then
156	echo "no ksh ... we will use bash"
157	use_shell="bash"
158	if [ "`which bash`" = "" ] ; then
159	echo "ksh (or bash) needed!! Install it!"
160	fi
161	fi
162
163
164	for logiciel in csh wget tar gzip make $compilo gcc ; do
165	if [ "`which $logiciel`" = "" ] ; then
166	echo You must first install $logiciel on your system
167	exit
168	fi
169	done
170
171	if [ $pclinux = 1 ] ; then
172	cd $MODEL
173	cat <<eod> tt.f90
174	print*,'coucou'
175	end
176	eod
177	$compilo tt.f90 -o a.out
178	./a.out >\| tt
179	if [ "`cat tt \| sed -e 's/ //g' `" != "coucou" ] ; then
180	echo problem installing with compiler $compilo ; exit ; fi
181	\rm tt a.out tt.f90
182	fi
183	fi
184
185	###########################################################################
186
187
188
189	if [ $getlmdzor = 1 ] ; then
190	echo '##########################################################'
191	echo Download a slightly modified version of LMDZ
192	echo '##########################################################'
193	cd $MODEL
194	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/modipsl.$version.tar.gz
195	gunzip modipsl.$version.tar.gz
196	tar xvf modipsl.$version.tar
197	\rm modipsl.$version.tar
198
199	# We download LMDZ and make some modifications to make it
200	#compatible with $compilo
201	# and we use an old stable but robust and well tested version of ORCHIDEE
202	# That version of ORCHIDEE can be obtained using
203	# wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/getlmdzor.x
204	fi
205
206	echo OK1
207
208	if [ $netcdf = 1 ] ; then
209	echo '##########################################################'
210	echo Compiling the Netcdf library
211	echo '##########################################################'
212	cd $MODEL
213	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/netcdf-4.0.1.tar.gz
214	gunzip netcdf-4.0.1.tar.gz
215	tar xvf netcdf-4.0.1.tar
216	\rm -f netcdf-4.0.1.tar
217
218	cd netcdf-4.0.1
219
220	OPTIMNC=$OPTIM
221	if [ $compilo = g95 ] ; then
222	# Set the appropriate compilation options
223	export FC=g95
224	export F90=g95
225	export F90FLAGS=" -cpp -ffree-form $OPTIMNC"
226	export FFLAGS=" -cpp $OPTIMNC"
227	export CPPFLAGS=-Df2cFortran
228	export CC=gcc
229	export CXX=g++
230	elif [ $compilo = gfortran ] ; then
231	export FC=gfortran
232	export F90=gfortran
233	export F90FLAGS=" -ffree-form $OPTIMNC"
234	export FFLAGS=" $OPTIMNC"
235	export CPPFLAGS=
236	export CC=gcc
237	export CXX=g++
238	elif [ $compilo = pgf90 ] ; then
239	export CPPFLAGS="-DNDEBUG -DpgiFortran"
240	export CC=pgcc
241	export CFLAGS="-Msignextend"
242	export CXX=pgCC
243	export CXXFLAGS="-Msignextend"
244	export FC=pgf90
245	export FFLAGS="$OPTIMNC"
246	export F90=pgf90
247	export F90FLAGS="$OPTIMNC"
248	elif [ $compilo = ifort ] ; then
249	export CPP="icc -E"
250	export F77=ifort
251	export FFLAGS="-O2 -ip -fpic -mcmodel=large"
252	export F90=ifort
253	export FCFLAGS="-O2 -ip -fpic -mcmodel=large"
254	export CC=icc
255	export CFLAGS="-O2 -ip -fpic -mcmodel=large"
256	export CXX=icpc
257	export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
258	else
259	echo unexpected compiler $compilo ; exit
260	fi
261
262	localdir=`pwd -P`
263	./configure --prefix=$localdir
264	make check
265	make install
266	fi # of if [ $netcdf = 1 ]
267
268	#=======================================================================================
269	echo OK2 ioipsl=$ioipsl
270	echo '##########################################################'
271	echo 'Installing MODIPSL, the installation package manager for the '
272	echo 'IPSL models and tools'
273	echo '##########################################################'
274
275	if [ $netcdf = 0 -o $netcdf = 1 ] ; then
276	ncdfdir=$MODEL/netcdf-4.0.1
277	else
278	ncdfdir=$netcdf
279	fi
280
281	if [ $ioipsl = 1 ] ; then
282	cd $MODEL/modipsl
283	\rm -r lib/*
284
285	cd util
286
287	if [ $compilo = pgf90 ] ; then
288	fmod='module '
289	elif [ $compilo = g95 ] ; then
290	fmod='fmod='
291	elif [ $compilo = ifort ] ; then
292	fmod='module '
293	else # gfortran
294	fmod='I '
295	fi
296	cp AA_make.gdef AA_make.orig
297	F_C="$compilo -c " ; if [ $compilo = gfortran ] ; then F_C="$compilo -c -cpp " ; fi
298	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
299	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $F_C": \
300	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
301	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= '"$ncdfdir"'/include:' \
302	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdf:' \
303	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
304	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
305	tmp >\| AA_make.gdef
306
307
308	if [ "$use_shell" = "ksh" ] ; then
309	if [ "$pclinux" = 1 ] ; then
310	./ins_make -t g95 # We use lines for g95 even for the other compilers
311	fi
312	else # bash
313	sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash
314	chmod u=rwx ins_make.bash
315	if [ "$pclinux" = 1 ] ; then
316	./ins_make.bash -t g95 # We use lines for g95 even for the other compilers
317	else
318	./ins_make.bash
319	fi
320	fi # of if [ "$use_shell" = "ksh" ]
321
322	echo '##########################################################'
323	echo 'Compiling IOIPSL, the interface library with Netcdf'
324	echo '##########################################################'
325
326	cd $MODEL/modipsl/modeles/IOIPSL/src
327	if [ "$use_shell" = "bash" ] ; then
328	cp Makefile Makefile.ksh
329	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
330	fi
331	if [ "$pclinux" = 1 ] ; then
332	# Build IOIPSL modules and library
333	if [ $compilo = g95 ] ; then
334	cp restcom.f90 restcom.f90.orig
335	sed -e 's:cmode=or(NF90_NOCLOBBER,NF90_64BIT_OFFSET):cmode=NF90_NOCLOBBER:' restcom.f90.orig > restcom.f90
336	fi
337	make clean
338	make
339	if [ $compilo = gfortran ] ; then # copy module files to lib
340	cp -f *.mod ../../../lib
341	fi
342	# Build IOIPSL tools (ie: "rebuild", if present)
343	if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then
344	cd $MODEL/modipsl/modeles/IOIPSL/tools
345	# adapt Makefile & rebuild script if in bash
346	if [ "$use_shell" = "bash" ] ; then
347	cp Makefile Makefile.ksh
348	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
349	cp rebuild rebuild.ksh
350	sed -e 's:/bin/ksh:/bin/bash:g' \
351	-e 's:print -u2:echo:g' \
352	-e 's:print:echo:g' rebuild.ksh > rebuild
353	fi
354	make clean
355	make
356	fi
357	fi # of if [ "$pclinux" = 1 ]
358
359	else # of if [ $ioipsl = 1 ]
360	if [ ${hostname:0:5} = ada33 ] ; then
361	cd $MODEL/modipsl
362	cd util
363
364	cp AA_make.gdef AA_make.orig
365	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
366	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \
367	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
368	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= -I/smplocal/pub/HDF5/1.8.9/seq/include -I/smplocal/pub/NetCDF/4.1.3/include:' \
369	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L/smplocal/pub/NetCDF/4.1.3/lib -lnetcdff -lnetcdf:' \
370	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
371	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
372	tmp >\| AA_make.gdef
373
374	./ins_make -t g95 # We use lines for g95 even for the other compilers
375
376	# on Ada, IOIPSL is already installed in ~rpsl035/IOIPSL_PLUS
377	# so link it to current settings
378	cd $MODEL/modipsl/modeles/
379	\rm -r -f IOIPSL
380	ln -s ~rpsl035/IOIPSL_PLUS IOIPSL
381	cd ..
382	ln -s ~rpsl035/IOIPSL_PLUS/modipsl/bin/* bin/
383	ln -s ~rpsl035/IOIPSL_PLUS/modipsl/lib/* lib/
384
385	fi # of if [ ${hostname:0:5} = ada33 ]
386	fi # of if [ $ioipsl = 1 ]
387
388	#============================================================================
389	veget_version=false
390	if [ "$veget" = 1 ] ; then
391	echo '########################################################'
392	echo 'Compiling ORCHIDEE, the continental surfaces model '
393	echo '########################################################'
394	cd $MODEL/modipsl/modeles/ORCHIDEE
395	echo OKpwd ; pwd
396	if [ -d src_parallel ] ; then
397	liste_src="parallel parameters global stomate sechiba driver"
398	veget_version=orchidee2.0
399	else
400	# Obsolete, for ORCHIDEE_beton only
401	liste_src="parameters stomate sechiba "
402	# A trick to compile ORCHIDEE depending on if we are using real4 or real8
403	cd src_parameters ; \cp reqdprec.$real reqdprec.f90 ; cd ..
404	veget_version=orchidee1.9
405	fi
406	echo liste_strc $liste_src
407
408	for d in $liste_src ; do src_d=src_$d
409	echo src_d $src_d
410	echo ls ; ls
411	if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi
412	cd $src_d ; \rm -f *.mod make ; make clean
413	make ; if [ $compilo = gfortran ] ; then cp -f *.mod ../../../lib ; fi
414	cd ..
415	done
416	fi # of if [ "$veget" = 1 ]
417
418	#============================================================================
419	# Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file...
420	if [ -d $MODEL/modipsl/modeles/LMDZ[45] ] ; then
421	echo '##########################################################'
422	echo 'Compiling LMDZ'
423	echo '##########################################################'
424	cd $MODEL/modipsl/modeles/LMDZ[45]
425	else
426	echo "ERROR: No LMDZ4 (or LMDZ5) directory !!!"
427	exit
428	fi
429
430	#============================================================================
431	# Traitement momentanne a cause d'un bug dans makegcm
432	cp create_make_gcm create_make_gcm.orig
433	nl=`sed -n -e /PROGRAM/= create_make_gcm.orig \| tail -1`
434	sed -e "$nl s/ PROGRA/PROGRA/" create_make_gcm.orig >\| create_make_gcm
435
436	#mv -f tmp crea
437	if [ "$pclinux" = 1 ] ; then
438	if [ $compilo = gfortran ] ; then
439	sed \
440	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
441	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
442	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
443	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
444	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
445	-e 's/g95/gfortran/g' \
446	-e 's/-fmod=/-I/g' \
447	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
448	-e 's/-lparallel//' \
449	-e 's/-lnetcdff//g' \
450	-e 's/-lorglob//' \
451	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
452	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
453	elif [ $compilo = ifort ] ; then
454	sed \
455	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
456	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
457	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
458	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
459	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
460	-e 's/g95/ifort/g' \
461	-e 's/-fmod=/-module /g' \
462	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
463	-e 's/-lparallel//' \
464	-e 's/-lnetcdff//g' \
465	-e 's/-lorglob//' \
466	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
467	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
468	else # g95 or pgf90
469	sed \
470	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
471	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
472	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
473	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
474	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
475	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
476	-e 's/-lparallel//' \
477	-e 's/-lnetcdff//g' \
478	-e 's/-lorglob//' \
479	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
480	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
481	fi
482	else
483	sed \
484	-e 's/-lparallel//' \
485	-e 's/-lorglob//' \
486	-e 's/-lsxorglob//' \
487	-e 's/-lsxparallel//' \
488	-e 's/-lsxioipsl/-lioipsl/g' \
489	makegcm.orig >\| makegcm
490	fi
491
492	chmod +x makegcm
493
494	###########################################################
495	# For those who want to use fcm to compile via :
496	# makelmdz_fcm -arch local .....
497	############################################################
498
499	if [ "$pclinux" = 1 ] ; then
500	# create local 'arch' files (if on Linux PC):
501	cd arch
502	# arch-local.path file
503	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdf\"" > arch-local.path
504	echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
505	echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path
506	echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
507	echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path
508	echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
509	# arch-local.fcm file (adapted from arch-linux-32bit.fcm)
510	if [ $compilo = g95 ] ; then
511	sed -e s:"%COMPILER pgf95":"%COMPILER g95":1 \
512	-e s:"%LINK pgf95":"%LINK g95":1 \
513	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
514	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -g -O1 -Wall":1 \
515	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g -O0 -Wall -ftrace=full -fbounds-check -freal=nan":1 \
516	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
517	arch-linux-32bit.fcm > arch-local.fcm
518	if [ $real = r8 ] ; then
519	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
520	arch-local.fcm > arch-local.fcm.new
521	mv -f arch-local.fcm.new arch-local.fcm
522	fi
523	elif [ $compilo = gfortran ] ; then
524	sed -e s:"%COMPILER pgf95":"%COMPILER gfortran":1 \
525	-e s:"%LINK pgf95":"%LINK gfortran":1 \
526	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
527	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -Wall -fbounds-check":1 \
528	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all":1 \
529	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
530	arch-linux-32bit.fcm > arch-local.fcm
531	if [ $real = r8 ] ; then
532	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
533	arch-local.fcm > arch-local.fcm.new
534	mv -f arch-local.fcm.new arch-local.fcm
535	fi
536	elif [ $compilo = pgf90 ] ; then
537	sed -e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \
538	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
539	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
540	arch-linux-32bit.fcm > arch-local.fcm
541	if [ $real = r8 ] ; then
542	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
543	arch-local.fcm > arch-local.fcm.new
544	mv -f arch-local.fcm.new arch-local.fcm
545	fi
546	elif [ $compilo = ifort ] ; then
547	sed -e s:"%COMPILER pgf95":"%COMPILER ifort":1 \
548	-e s:"%LINK pgf95":"%LINK ifort":1 \
549	-e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \
550	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
551	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
552	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -p -g -O2 -traceback -fp-stack-check -ftrapuv -check":1 \
553	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g -no-ftz -traceback -ftrapuv -fp-stack-check -check":1 \
554	arch-linux-32bit.fcm > arch-local.fcm
555	if [ $real = r8 ] ; then
556	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
557	arch-local.fcm > arch-local.fcm.new
558	mv -f arch-local.fcm.new arch-local.fcm
559	fi
560	else
561	echo Unexpected compiler $compilo ; exit
562	fi # of if [ $compilo = g95 ] elif [ $compilo = pgf90 ]
563	cd ..
564	### Adapt "bld.cfg" (add the shell):
565	whereisthatshell=$(which ${use_shell})
566	echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg
567
568	fi # of if [ "$pclinux" = 1 ]
569
570
571	cd $MODEL/modipsl/modeles/LMDZ?
572
573	##################################################################
574	# Compile LMDZ
575	##################################################################
576	#ok_veget=false
577	#if [ "$veget" = 1 ] ; then ok_veget=true ; fi
578	if [ $compile_with_fcm = 1 ] ; then makelmdz=makelmdz_fcm ; else makelmdz=makelmdz ; fi
579	if [ "$pclinux" = 1 ] ; then
580	./$makelmdz -d ${grid_resolution} -arch local -v $veget_version gcm
581	else
582	# we are on Ada
583	./$makelmdz -d ${grid_resolution} -arch X64_ADA -v $veget_version gcm
584	fi
585
586	if [ -f gcm.e ] \|\| [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] \|\| [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then
587	echo '##########################################################'
588	echo 'Compilation successfull !! '
589	echo '##########################################################'
590	else
591	echo 'Compilation failed !!'
592	exit
593	fi
594
595	##################################################################
596	# Below, we run a benchmark test (if bench=0)
597	##################################################################
598	if [ $bench = 0 ] ; then
599	exit
600	fi
601
602	echo '##########################################################'
603	echo ' Running a test run '
604	echo '##########################################################'
605
606	\rm -r BENCH${grid_resolution}
607	bench=bench_lmdz_${grid_resolution}
608	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/$bench.tar.gz
609	gunzip $bench.tar.gz
610	tar xvf $bench.tar
611
612	if [ -f gcm.e ] ; then
613	cp gcm.e BENCH${grid_resolution}/
614	elif [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] ; then
615	cp bin/gcm_${grid_resolution}_phylmd_seq_orch.e BENCH${grid_resolution}/gcm.e
616	elif [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then
617	cp bin/gcm_${grid_resolution}_phylmd_seq.e BENCH${grid_resolution}/gcm.e
618	else
619	echo "No gcm.e found"
620	exit
621	fi
622
623	cd BENCH${grid_resolution}
624	./bench.sh > bench.out 2>&1
625
626	echo '##########################################################'
627	echo ' Bench results '
628	echo '##########################################################'
629
630	cat ./bench.out
631
632	echo '##########################################################'
633	echo 'Simulation finished in' `pwd`
634	echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e'
635	echo 'or ./bench.sh'
636	echo '##########################################################'

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