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source: BOL/script_install/install.sh @ 1726

Last change on this file since 1726 was 1710, checked in by Ehouarn Millour, 12 years ago
Make install.sh modify the makelmdz script (just like was already done for makelmdz_fcm) so that one can compile with the distributed version of ORCHIDEE using "-v true". EM
File size: 20.9 KB

Line
1	#!/bin/bash
2
3	###########################################################################
4	# Author : Frédéric Hourdin/LMD/hourdin@lmd.jussieu.fr
5	# Usage : install.sh
6	#
7	# bash installation script of the LMDZ model on a Linux PC.
8	# the model is downloaded in the following direcory tree
9	# $MODEL/modipsl/modeles/...
10	# using the "modipsl" infrastructure created by the "IPSL"
11	# for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling
12	# activities.
13	# Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE)
14	# components.
15	#
16	# The sources of the models can be found in the "modeles" directory.
17	# In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs
18	# using the NetCDF library.
19	#
20	# The script downloads various source files (including a version of NetCDF)
21	# and utilities, compiles the model, and runs a test simulation in a
22	# munimal configuration.
23	#
24	# Prerequisites : g95/pgf90/gfortran, ksh, wget , gunzip, tar, ...
25	#
26	# Modif 18/11/2011
27	# changes for option real 8.
28	# We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM
29	# but with -r4 for netcdf. Variable real must be set to
30	# r4 or r8 at the beginning of the script below.
31	#
32	###########################################################################
33
34	echo '################################################################'
35	echo Choice of installation options
36	echo '################################################################'
37
38
39	#real=r4
40	real=r8
41
42	# WARNING !!!! For versions before october 2009, use
43	# install.v2.sh instead of install.sh
44
45	#version=20110921.trunk
46	version=testing
47
48	#Chemin pour placer le modele
49	MODEL=./LMDZ$version
50
51	getlmdzor=1
52	netcdf=1 # 1 for automatic installation
53	# 0 for no installation
54	# /.../../netcdf-4.0.1 if wanting to link with an already
55	# compiled netcdf library (implies to check option compatibility)
56	check_linux=1
57	ioipsl=1
58	veget=1
59	bench=1
60	pclinux=1
61	compilo=gfortran # compilo=pgf90 or g95 or gfortran or ifort sur PC linux
62
63
64	#####################################################################
65	# Test for old gfortran compilers
66	if [ $compilo = gfortran ] ; then
67	gfortranv=`gfortran --version \| \
68	head -1 \| awk ' { print $NF } ' \| awk -F. ' { print $1 * 10 + $2 } '`
69	if [ $gfortranv -le 43 ] ; then
70	echo ERROR : Your gfortran compiler is too old
71	echo 'Please choose a new one (g95, ifort) and change the line'
72	echo compilo=xxx
73	echo in the install.sh script and rerun it
74	exit
75	fi
76	fi
77	#####################################################################
78
79
80
81	## compile_with_fcm=1 : use makelmdz_fcm, possible a of version 20111103.trunk (LMDZ5/trunk rev 1578)
82	## compile_with_fcm=0 : use makegcm
83	compile_with_fcm=1
84
85	OPTPREC=""
86	echo '################################################################'
87	echo Choix des options de compilation
88	echo '################################################################'
89
90	if [ $compilo = g95 ] ; then
91	if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi
92	OPTIM='-i4 -O3'
93	elif [ $compilo = gfortran ] ; then
94	if [ $real = r8 ] ; then OPTPREC="-fdefault-real-8 -DNC_DOUBLE" ; fi
95	OPTIM='-O3'
96	elif [ $compilo = pgf90 ] ; then
97	if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi
98	OPTIM='-O2 -Munroll -Mnoframe -Mautoinline -Mcache_align'
99	# with pgf90, compile with fcm
100	compile_with_fcm=1
101	else
102	# ifort
103	if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi
104	OPTIM="-O2 -ip -mkl=sequential -align all -static "
105	# with ifort, compile with fcm
106	compile_with_fcm=1
107	fi
108	OPTIMGCM="$OPTIM $OPTPREC"
109
110	# choose the resolution for the bench runs
111	# grid_resolution= 32x24x11 or 48x36x19 for tests (test without ORCHIDEE)
112	# 96x71x19 standard configuration
113	grid_resolution=48x36x19
114
115	hostname=`hostname`
116
117	##########################################################################
118	# If installing on know machines such as NEC Brodie
119	# at IDRIS, don't check for available software and don"t install netcdf
120	if [ $hostname = brodie ] ; then
121	netcdf=0
122	check_linux=0
123	pclinux=0
124	fi
125	##########################################################################
126
127
128	mkdir -p $MODEL
129	echo $MODEL
130	MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary
131
132
133
134	# Option -fendian=big is only to be used with ARPEGE1D.
135	# The -r8 should probably be avoided if running on 32 bit machines
136	# Option r8 is not mandatory and generates larger executables.
137	# It is however mandatory if using ARPEGE1D
138	# Better optimization options might be a better choice (e.g. -O3)
139
140
141	echo '################################################################'
142	if [ "$check_linux" = 1 ] ; then
143	echo Check if required software is available
144	echo '################################################################'
145
146	#### Ehouarn: test if ksh and/or bash are available
147	use_shell="ksh" # default: use ksh
148	if [ "`which ksh`" = "" ] ; then
149	echo "no ksh ... we will use bash"
150	use_shell="bash"
151	if [ "`which bash`" = "" ] ; then
152	echo "ksh (or bash) needed!! Install it!"
153	fi
154	fi
155
156
157	for logiciel in csh wget tar gzip make $compilo gcc ; do
158	if [ "`which $logiciel`" = "" ] ; then
159	echo You must first install $logiciel on your system
160	exit
161	fi
162	done
163
164	if [ $pclinux = 1 ] ; then
165	cd $MODEL
166	cat <<eod> tt.f90
167	print*,'coucou'
168	end
169	eod
170	$compilo tt.f90 -o a.out
171	./a.out >\| tt
172	if [ "`cat tt \| sed -e 's/ //g' `" != "coucou" ] ; then
173	echo problem installing with compiler $compilo ; exit ; fi
174	\rm tt a.out tt.f90
175	fi
176	fi
177
178	###########################################################################
179
180
181
182	if [ $getlmdzor = 1 ] ; then
183	echo '##########################################################'
184	echo Download a slightly modified version of LMDZ
185	echo '##########################################################'
186	cd $MODEL
187	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/modipsl.$version.tar.gz
188	gunzip modipsl.$version.tar.gz
189	tar xvf modipsl.$version.tar
190	\rm modipsl.$version.tar
191
192	# We download LMDZ and make some modifications to make it
193	#compatible with $compilo
194	# and we use an old stable but robust and well tested version of ORCHIDEE
195	# That version of ORCHIDEE can be obtained using
196	# wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/getlmdzor.x
197	fi
198
199	echo OK1
200
201	if [ $netcdf = 1 ] ; then
202	echo '##########################################################'
203	echo Compiling the Netcdf library
204	echo '##########################################################'
205	cd $MODEL
206	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/netcdf-4.0.1.tar.gz
207	gunzip netcdf-4.0.1.tar.gz
208	tar xvf netcdf-4.0.1.tar
209	\rm -f netcdf-4.0.1.tar
210
211	cd netcdf-4.0.1
212
213	OPTIMNC=$OPTIM
214	if [ $compilo = g95 ] ; then
215	# Set the appropriate compilation options
216	export FC=g95
217	export F90=g95
218	export F90FLAGS=" -cpp -ffree-form $OPTIMNC"
219	export FFLAGS=" -cpp $OPTIMNC"
220	export CPPFLAGS=-Df2cFortran
221	export CC=gcc
222	export CXX=g++
223	elif [ $compilo = gfortran ] ; then
224	export FC=gfortran
225	export F90=gfortran
226	export F90FLAGS=" -ffree-form $OPTIMNC"
227	export FFLAGS=" $OPTIMNC"
228	export CPPFLAGS=
229	export CC=gcc
230	export CXX=g++
231	elif [ $compilo = pgf90 ] ; then
232	export CPPFLAGS="-DNDEBUG -DpgiFortran"
233	export CC=pgcc
234	export CFLAGS="-Msignextend"
235	export CXX=pgCC
236	export CXXFLAGS="-Msignextend"
237	export FC=pgf90
238	export FFLAGS="$OPTIMNC"
239	export F90=pgf90
240	export F90FLAGS="$OPTIMNC"
241	elif [ $compilo = ifort ] ; then
242	export CPP="icc -E"
243	export F77=ifort
244	export FFLAGS="-O2 -ip -fpic -mcmodel=large"
245	export F90=ifort
246	export FCFLAGS="-O2 -ip -fpic -mcmodel=large"
247	export CC=icc
248	export CFLAGS="-O2 -ip -fpic -mcmodel=large"
249	export CXX=icpc
250	export CXXFLAGS="-O2 -ip -fpic -mcmodel=large"
251	else
252	echo unexpected compiler $compilo ; exit
253	fi
254	## end of if [ $netcdf = 1 ]
255	#cd src
256
257	### Correction d'un petit probleme de netcdf
258	##sed -e '83s/^$/\#define f2cFortran/' cfortran.h >\| tmp ; \mv tmp cfortran.h
259
260	# Compilation
261	# Modif du 6 juillet 2009. Plantage quand on essaie de compiler netcdf avec
262	# gcc plutÃ´t que c++
263	##sed -e 's/ c++/ gcc/g' configure >\| tmp ; mv -f tmp configure ; chmod +x configure
264	localdir=`pwd -P`
265	./configure --prefix=$localdir
266	make check
267	make install
268	fi
269
270	echo OK2 ioipsl=$ioipsl
271	echo '##########################################################'
272	echo Installing MODIPSL, the installation package manager for the
273	echo IPSL models and tools
274	echo '##########################################################'
275
276	if [ $netcdf = 0 -o $netcdf = 1 ] ; then
277	ncdfdir=$MODEL/netcdf-4.0.1
278	else
279	ncdfdir=$netcdf
280	fi
281
282	if [ $ioipsl = 1 ] ; then
283	cd $MODEL/modipsl
284	\rm -r lib/*
285
286	cd util
287
288	if [ $compilo = pgf90 ] ; then
289	fmod='module '
290	elif [ $compilo = g95 ] ; then
291	fmod='fmod='
292	elif [ $compilo = ifort ] ; then
293	fmod='module '
294	else # gfortran
295	fmod='I '
296	fi
297	cp AA_make.gdef AA_make.orig
298	sed -e 's/^\#..g95..\#.*.$/\#/' AA_make.gdef > tmp
299	sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \
300	-e 's/g95..w_w..(F_D)/g95 w_w = '"$OPTIMGCM"'/' \
301	-e 's:g95..NCDF_INC..$:g95 NCDF_INC= '"$ncdfdir"'/include:' \
302	-e 's:g95..NCDF_LIB..$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdf:' \
303	-e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \
304	-e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \
305	tmp >\| AA_make.gdef
306
307
308	if [ "$use_shell" = "ksh" ] ; then
309	if [ "$pclinux" = 1 ] ; then
310	./ins_make -t g95 # We use lines for g95 even for the other compilers
311	fi
312	else # bash
313	sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash
314	chmod u=rwx ins_make.bash
315	if [ "$pclinux" = 1 ] ; then
316	./ins_make.bash -t g95 # We use lines for g95 even for the other compilers
317	else
318	./ins_make.bash
319	fi
320	fi
321
322	echo '##########################################################'
323	echo Compiling IOIPSL, the interface library with Netcdf
324	echo '##########################################################'
325
326	cd $MODEL/modipsl/modeles/IOIPSL/src
327	if [ "$use_shell" = "bash" ] ; then
328	cp Makefile Makefile.ksh
329	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
330	fi
331	if [ "$pclinux" = 1 ] ; then
332	# Build IOIPSL modules and library
333	make clean
334	make
335	if [ $compilo = gfortran ] ; then # copy module files to lib
336	cp -f *.mod ../../../lib
337	fi
338	# Build IOIPSL tools (ie: "rebuild", if present)
339	if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then
340	cd $MODEL/modipsl/modeles/IOIPSL/tools
341	# adapt Makefile & rebuild script if in bash
342	if [ "$use_shell" = "bash" ] ; then
343	cp Makefile Makefile.ksh
344	sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile
345	cp rebuild rebuild.ksh
346	sed -e 's:/bin/ksh:/bin/bash:g' \
347	-e 's:print -u2:echo:g' \
348	-e 's:print:echo:g' rebuild.ksh > rebuild
349	fi
350	make clean
351	make
352	fi
353	else
354	# we're on brodie
355	sxgmake clean
356	sxgmake
357	fi
358
359	if [ "$veget" = 1 ] ; then
360	echo '########################################################'
361	echo Compiling ORCHIDEE, the continental surfaces model
362	echo '########################################################'
363	cd $MODEL/modipsl/modeles/ORCHIDEE
364	cd src_parameters
365	# A trick to compile ORCHIDEE depending on if we are using real4 or real8
366
367
368	\cp reqdprec.$real reqdprec.f90
369	make
370	if [ $compilo = gfortran ] ; then # copy module files to lib
371	cp -f *.mod ../../../lib
372	fi
373	cd ../src_stomate
374	make
375	if [ $compilo = gfortran ] ; then # copy module files to lib
376	cp -f *.mod ../../../lib
377	fi
378	cd ../src_sechiba
379	make
380	if [ $compilo = gfortran ] ; then # copy module files to lib
381	cp -f *.mod ../../../lib
382	fi
383	fi
384	fi
385
386
387	# Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file...
388	if [[ -d $MODEL/modipsl/modeles/LMDZ4 ]] ; then
389	echo '##########################################################'
390	echo 'Compilation de LMDZ4'
391	echo '##########################################################'
392	cd $MODEL/modipsl/modeles/LMDZ4
393	else
394	if [[ -d $MODEL/modipsl/modeles/LMDZ5 ]] ; then
395	echo '##########################################################'
396	echo 'Compiling LMDZ5'
397	echo '##########################################################'
398	cd $MODEL/modipsl/modeles/LMDZ5
399	else
400	echo "ERROR: No LMDZ4 (or LMDZ5) directory !!!"
401	exit
402	fi
403	fi
404
405	##########################################################
406	# Traitement momentanne a cause d'un bug dans makegcm
407	cp create_make_gcm create_make_gcm.orig
408	nl=`sed -n -e /PROGRAM/= create_make_gcm.orig \| tail -1`
409	sed -e "$nl s/ PROGRA/PROGRA/" create_make_gcm.orig >\| create_make_gcm
410
411	#mv -f tmp crea
412	if [ "$pclinux" = 1 ] ; then
413	if [ $compilo = gfortran ] ; then
414	sed \
415	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
416	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
417	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
418	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
419	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
420	-e 's/g95/gfortran/g' \
421	-e 's/-fmod=/-I/g' \
422	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
423	-e 's/-lparallel//' \
424	-e 's/-lnetcdff//g' \
425	-e 's/-lorglob//' \
426	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
427	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
428	elif [ $compilo = ifort ] ; then
429	sed \
430	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
431	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
432	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
433	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
434	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
435	-e 's/g95/ifort/g' \
436	-e 's/-fmod=/-module /g' \
437	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
438	-e 's/-lparallel//' \
439	-e 's/-lnetcdff//g' \
440	-e 's/-lorglob//' \
441	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
442	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
443	else # g95 or pgf90
444	sed \
445	-e 's:\#setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
446	-e 's:\#setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
447	-e 's:setenv NCDFINC.*.$:setenv NCDFINC '"$ncdfdir"'/include:' \
448	-e 's:setenv NCDFLIB.*.$:setenv NCDFLIB '"$ncdfdir"'/lib:' \
449	-e 's/set FC_LINUX.*.$/set FC_LINUX='$compilo'/' \
450	-e 's/-fno-second-underscore//' -e 's/-fstatic//' \
451	-e 's/-lparallel//' \
452	-e 's/-lnetcdff//g' \
453	-e 's/-lorglob//' \
454	-e 's/-ffixed-form//' -e 's/-ffree-form//' \
455	-e 's/set OPT_LINUX.*.$/set OPT_LINUX=\"'"$OPTIMGCM"\"'/' makegcm.orig >\| makegcm
456	fi
457	else
458	sed \
459	-e 's/-lparallel//' \
460	-e 's/-lorglob//' \
461	-e 's/-lsxorglob//' \
462	-e 's/-lsxparallel//' \
463	-e 's/-lsxioipsl/-lioipsl/g' \
464	makegcm.orig >\| makegcm
465	fi
466
467	chmod +x makegcm
468
469	###########################################################
470	# For those who want to use fcm to compile via :
471	# makelmdz_fcm -arch local .....
472	############################################################
473
474	if [ "$pclinux" = 1 ] ; then
475	# create local 'arch' files (if on Linux PC):
476	cd arch
477	# arch-local.path file
478	echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdf\"" > arch-local.path
479	echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path
480	echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path
481	echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
482	echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path
483	echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path
484	# arch-local.fcm file (adapted from arch-linux-32bit.fcm)
485	if [ $compilo = g95 ] ; then
486	sed -e s:"%COMPILER pgf95":"%COMPILER g95":1 \
487	-e s:"%LINK pgf95":"%LINK g95":1 \
488	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
489	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -g -O1 -Wall":1 \
490	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g -O0 -Wall -ftrace=full -fbounds-check -freal=nan":1 \
491	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
492	arch-linux-32bit.fcm > arch-local.fcm
493	if [ $real = r8 ] ; then
494	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
495	arch-local.fcm > arch-local.fcm.new
496	mv -f arch-local.fcm.new arch-local.fcm
497	fi
498	elif [ $compilo = gfortran ] ; then
499	sed -e s:"%COMPILER pgf95":"%COMPILER gfortran":1 \
500	-e s:"%LINK pgf95":"%LINK gfortran":1 \
501	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
502	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -Wall -fbounds-check":1 \
503	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all":1 \
504	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
505	arch-linux-32bit.fcm > arch-local.fcm
506	if [ $real = r8 ] ; then
507	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
508	arch-local.fcm > arch-local.fcm.new
509	mv -f arch-local.fcm.new arch-local.fcm
510	fi
511	elif [ $compilo = pgf90 ] ; then
512	sed -e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \
513	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
514	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
515	arch-linux-32bit.fcm > arch-local.fcm
516	if [ $real = r8 ] ; then
517	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
518	arch-local.fcm > arch-local.fcm.new
519	mv -f arch-local.fcm.new arch-local.fcm
520	fi
521	elif [ $compilo = ifort ] ; then
522	sed -e s:"%COMPILER pgf95":"%COMPILER ifort":1 \
523	-e s:"%LINK pgf95":"%LINK ifort":1 \
524	-e s:"-Wl,-Bstatic -L/usr/lib/gcc-lib/i386-linux/2.95.2":" ":1 \
525	-e s:"%PROD_FFLAGS -fast":"%PROD_FFLAGS $OPTIM":1 \
526	-e s:"%BASE_FFLAGS ":"%BASE_FFLAGS $OPTPREC":1 \
527	-e s:"%DEV_FFLAGS -g -O1":"%DEV_FFLAGS -p -g -O2 -traceback -fp-stack-check -ftrapuv -check":1 \
528	-e s:"%DEBUG_FFLAGS -g -O0 -Kieee -Ktrap=fp -Mbounds":"%DEBUG_FFLAGS -g -no-ftz -traceback -ftrapuv -fp-stack-check -check":1 \
529	arch-linux-32bit.fcm > arch-local.fcm
530	if [ $real = r8 ] ; then
531	sed -e s:"%FPP_DEF ":"%FPP_DEF NC_DOUBLE":1 \
532	arch-local.fcm > arch-local.fcm.new
533	mv -f arch-local.fcm.new arch-local.fcm
534	fi
535	else
536	echo Unexpected compiler $compilo ; exit
537	fi # of if [ $compilo = g95 ] elif [ $compilo = pgf90 ]
538	cd ..
539	### Adapt "bld.cfg" (add the shell):
540	whereisthatshell=$(which ${use_shell})
541	echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg
542
543	### Modify makelmdz_fcm and makelmdz to use ORCHIDEE in the bench:
544	### remove liborglob.a and libparallel.a
545	cp makelmdz_fcm makelmdz_fcm.orig
546	sed -e "s/-l\${LIBPREFIX}parallel//" \
547	sed -e "s/-l\${LIBPREFIX}orglob//" \
548	makelmdz_fcm.orig > makelmdz_fcm
549	cp makelmdz makelmdz.orig
550	sed -e "s/-l\${LIBPREFIX}parallel//" \
551	sed -e "s/-l\${LIBPREFIX}orglob//" \
552	makelmdz.orig > makelmdz
553
554	fi # of if [ "$pclinux" = 1 ]
555
556	##################################################################
557	# Compile LMDZ
558	##################################################################
559	ok_veget=false
560	if [ "$veget" = 1 ] ; then $ok_veget = true; fi
561	if [ $compile_with_fcm = 1 ] ; then
562	# Compile with makelmdz_fcm
563	./makelmdz_fcm -d ${grid_resolution} -arch local -v $ok_veget gcm
564	else
565	# Comple with makegcm:
566	# 3 times! because some dependecies are not well resolved with makegcm
567	./makegcm -d ${grid_resolution} -v $ok_veget gcm
568	./makegcm -d ${grid_resolution} -v $ok_veget gcm
569	./makegcm -d ${grid_resolution} -v $ok_veget gcm
570	fi
571
572	if [ -f gcm.e ] \|\| [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] \|\| [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then
573	echo '##########################################################'
574	echo Compilation successfull !!
575	echo '##########################################################'
576	else
577	echo Compilation failed !!
578	exit
579	fi
580
581	##################################################################
582	# Below, we run a benchmark test (if bench=0)
583	##################################################################
584	if [ $bench = 0 ] ; then
585	exit
586	fi
587
588	echo '##########################################################'
589	echo Running a test run
590	echo '##########################################################'
591
592	\rm -r BENCH${grid_resolution}
593	bench=bench_lmdz_${grid_resolution}
594	wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/$bench.tar.gz
595	gunzip $bench.tar.gz
596	tar xvf $bench.tar
597
598	if [ -f gcm.e ] ; then
599	cp gcm.e BENCH${grid_resolution}/
600	elif [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] ; then
601	cp bin/gcm_${grid_resolution}_phylmd_seq_orch.e BENCH${grid_resolution}/gcm.e
602	elif [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then
603	cp bin/gcm_${grid_resolution}_phylmd_seq.e BENCH${grid_resolution}/gcm.e
604	else
605	echo "No gcm.e found"
606	exit
607	fi
608
609	if [ $hostname = brodie ] ; then
610	echo to run the bench, you must log on to Brodie01
611	echo and then change directory to `pwd`/BENCH${grid_resolution}
612	echo and run the gcm
613	exit
614	fi
615
616	cd BENCH${grid_resolution}
617	./bench.sh > bench.out 2>&1
618
619	echo '##########################################################'
620	echo ' Bench results '
621	echo '##########################################################'
622
623	cat ./bench.out
624
625	echo '##########################################################'
626	echo 'Simulation finished in' `pwd`
627	echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e'
628	echo 'or ./bench.sh'
629	echo '##########################################################'
630

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