[1588] | 1 | #!/bin/bash |
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| 2 | |
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| 3 | ########################################################################### |
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[1708] | 4 | # Author : Frédéric Hourdin/LMD/hourdin@lmd.jussieu.fr |
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[1588] | 5 | # Usage : install.sh |
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| 6 | # |
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[1708] | 7 | # bash installation script of the LMDZ model on a Linux PC. |
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| 8 | # the model is downloaded in the following direcory tree |
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[1588] | 9 | # $MODEL/modipsl/modeles/... |
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[1708] | 10 | # using the "modipsl" infrastructure created by the "IPSL" |
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| 11 | # for coupled (atmosphere/ocean/vegetation/chemistry) climate modeling |
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| 12 | # activities. |
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| 13 | # Here we only download atmospheric (LMDZ) and vegetation (ORCHIDEE) |
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| 14 | # components. |
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[1588] | 15 | # |
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[1708] | 16 | # The sources of the models can be found in the "modeles" directory. |
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| 17 | # In the present case, LMDZ5, ORCHIDEE and IOIPSL (handling of input-outputs |
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| 18 | # using the NetCDF library. |
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[1588] | 19 | # |
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[1708] | 20 | # The script downloads various source files (including a version of NetCDF) |
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| 21 | # and utilities, compiles the model, and runs a test simulation in a |
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| 22 | # munimal configuration. |
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[1588] | 23 | # |
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[1708] | 24 | # Prerequisites : g95/pgf90/gfortran, ksh, wget , gunzip, tar, ... |
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[1588] | 25 | # |
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[1589] | 26 | # Modif 18/11/2011 |
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[1708] | 27 | # changes for option real 8. |
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| 28 | # We comopile with -r8 (or equivalent) and -DNC_DOUBLE for the GCM |
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| 29 | # but with -r4 for netcdf. Variable real must be set to |
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| 30 | # r4 or r8 at the beginning of the script below. |
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[1589] | 31 | # |
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[1588] | 32 | ########################################################################### |
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| 33 | |
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[2030] | 34 | echo install.sh DEBUT `date` |
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[2031] | 35 | |
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[1911] | 36 | set -e |
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| 37 | |
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[1588] | 38 | echo '################################################################' |
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[1708] | 39 | echo Choice of installation options |
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[1588] | 40 | echo '################################################################' |
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| 41 | |
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| 42 | |
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[1590] | 43 | #real=r4 |
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[1589] | 44 | real=r8 |
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| 45 | |
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[1708] | 46 | # WARNING !!!! For versions before october 2009, use |
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| 47 | # install.v2.sh instead of install.sh |
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[1588] | 48 | |
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[2203] | 49 | version=trunk |
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[2409] | 50 | version=20151130.trunk |
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[1693] | 51 | version=testing |
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[2203] | 52 | |
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[2031] | 53 | compilo=gfortran # compilo=pgf90 or g95 or gfortran or ifort sur PC linux |
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[1693] | 54 | |
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[1588] | 55 | #Chemin pour placer le modele |
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| 56 | MODEL=./LMDZ$version |
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| 57 | |
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[2031] | 58 | |
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[1588] | 59 | getlmdzor=1 |
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| 60 | netcdf=1 # 1 for automatic installation |
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| 61 | # 0 for no installation |
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| 62 | # /.../../netcdf-4.0.1 if wanting to link with an already |
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| 63 | # compiled netcdf library (implies to check option compatibility) |
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| 64 | check_linux=1 |
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| 65 | ioipsl=1 |
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[1693] | 66 | veget=1 |
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[1588] | 67 | bench=1 |
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| 68 | pclinux=1 |
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| 69 | |
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[2031] | 70 | # choose the resolution for the bench runs |
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[2404] | 71 | # grid_resolution= 32x24x11, 32x32x39 or 48x36x19 for tests |
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[2409] | 72 | grid_resolution=48x36x19 |
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[1693] | 73 | |
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[2031] | 74 | ## compile_with_fcm=1 : use makelmdz_fcm, possible a of version 20111103.trunk (LMDZ5/trunk rev 1578) |
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| 75 | ## compile_with_fcm=0 : use makelmdz |
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[2430] | 76 | compile_with_fcm=0 |
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[2031] | 77 | |
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| 78 | |
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[2404] | 79 | |
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| 80 | if [ -d /u/lmdz/WWW/Distrib ] ; then |
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| 81 | dirget=/u/lmdz/WWW/Distrib |
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| 82 | elif [ -d ~/LMDZ/Distrib ] ; then |
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| 83 | dirget=~/LMDZ/Distrib |
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| 84 | else |
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| 85 | dirget=NONE |
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| 86 | fi |
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| 87 | wget='wget http://www.lmd.jussieu.fr/~lmdz/Distrib' |
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| 88 | |
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| 89 | |
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[1693] | 90 | ##################################################################### |
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| 91 | # Test for old gfortran compilers |
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[2030] | 92 | # If the compiler is too old (older than 4.3.x) we test if the |
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| 93 | # temporary gfortran44 patch is available on the computer in which |
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| 94 | # case the compiler is changed from gfortran to gfortran44 |
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| 95 | # Must be aware than parallelism can not be activated in this case |
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| 96 | ##################################################################### |
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| 97 | |
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[1693] | 98 | if [ $compilo = gfortran ] ; then |
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[2030] | 99 | gfortran=gfortran |
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[1693] | 100 | gfortranv=`gfortran --version | \ |
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| 101 | head -1 | awk ' { print $NF } ' | awk -F. ' { print $1 * 10 + $2 } '` |
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| 102 | if [ $gfortranv -le 43 ] ; then |
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[1708] | 103 | echo ERROR : Your gfortran compiler is too old |
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[1693] | 104 | echo 'Please choose a new one (g95, ifort) and change the line' |
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| 105 | echo compilo=xxx |
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| 106 | echo in the install.sh script and rerun it |
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[2030] | 107 | if [ `which gfortran44 | wc -w` -ne 0 ] ; then |
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| 108 | gfortran=gfortran44 |
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| 109 | else |
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| 110 | echo gfotran trop vieux ; exit |
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| 111 | fi |
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[1693] | 112 | fi |
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[2030] | 113 | compilo=$gfortran |
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[1693] | 114 | fi |
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| 115 | ##################################################################### |
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| 116 | |
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| 117 | |
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| 118 | |
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[1589] | 119 | OPTPREC="" |
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[1588] | 120 | echo '################################################################' |
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| 121 | echo Choix des options de compilation |
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| 122 | echo '################################################################' |
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[1589] | 123 | |
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[2031] | 124 | OPTIMNC=$OPTIM |
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| 125 | export FC=$compilo |
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| 126 | export F90=$compilo |
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| 127 | export F77=$compilo |
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| 128 | export CPPFLAGS= |
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| 129 | BASE_LD= |
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[1588] | 130 | if [ $compilo = g95 ] ; then |
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[2031] | 131 | # Set the appropriate compilation options |
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| 132 | OPTIM='-i4 -O3' |
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| 133 | OPTDEB="-g -O0 -Wall -ftrace=full -fbounds-check -freal=nan" |
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| 134 | OPTDEV="-g -O1 -Wall" |
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| 135 | fmod='fmod=' |
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| 136 | BASE_LD="" |
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[1589] | 137 | if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi |
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[2031] | 138 | export F90FLAGS=" -cpp -ffree-form $OPTIMNC" |
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| 139 | export FFLAGS=" -cpp $OPTIMNC" |
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| 140 | export CPPFLAGS=-Df2cFortran |
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| 141 | export CC=gcc |
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| 142 | export CXX=g++ |
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[2030] | 143 | elif [ $compilo = $gfortran ] ; then |
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[2031] | 144 | OPTIM='-O3' |
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[2404] | 145 | OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -finit-real=nan -fbacktrace" |
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[2031] | 146 | OPTDEV="-Wall -fbounds-check" |
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| 147 | fmod='I ' |
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[2409] | 148 | # OPTPREC="-frecursive -ffree-line-length-none" |
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| 149 | OPTPREC="-ffree-line-length-none" |
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| 150 | if [ $real = r8 ] ; then OPTPREC="$OPTPREC -fdefault-real-8 -DNC_DOUBLE" ; fi |
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[2031] | 151 | export F90FLAGS=" -ffree-form $OPTIMNC" |
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| 152 | export FFLAGS=" $OPTIMNC" |
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| 153 | export CC=gcc |
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| 154 | export CXX=g++ |
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| 155 | elif [ $compilo = mpif90 ] ; then |
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[1589] | 156 | OPTIM='-O3' |
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[2404] | 157 | OPTDEB="-g3 -Wall -fbounds-check -ffpe-trap=invalid,zero,overflow -O0 -fstack-protector-all -finit-real=nan -fbacktrace" |
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[2031] | 158 | OPTDEV="-Wall -fbounds-check" |
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| 159 | BASE_LD="-lblas" |
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| 160 | fmod='I ' |
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| 161 | if [ $real = r8 ] ; then OPTPREC="-fdefault-real-8 -DNC_DOUBLE -fcray-pointer" ; fi |
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| 162 | export F90FLAGS=" -ffree-form $OPTIMNC" |
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| 163 | export FFLAGS=" $OPTIMNC" |
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| 164 | export CC=gcc |
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| 165 | export CXX=g++ |
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[1590] | 166 | elif [ $compilo = pgf90 ] ; then |
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[2203] | 167 | OPTIM='-O2 -Mipa -Munroll -Mnoframe -Mautoinline -Mcache_align' |
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| 168 | OPTDEB='-g -Mdclchk -Mbounds -Mchkfpstk -Mchkptr -Minform=inform -Mstandard -Ktrap=fp -traceback' |
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| 169 | OPTDEV='-g -Mbounds -Ktrap=fp -traceback' |
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[2031] | 170 | fmod='module ' |
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[1590] | 171 | if [ $real = r8 ] ; then OPTPREC="-r8 -DNC_DOUBLE" ; fi |
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[2203] | 172 | export CPPFLAGS="-DpgiFortran" |
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[2031] | 173 | export CC=pgcc |
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[2203] | 174 | export CFLAGS="-O2 -Msignextend" |
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[2031] | 175 | export CXX=pgCC |
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[2203] | 176 | export CXXFLAGS="-O2 -Msignextend" |
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| 177 | export FFLAGS="-O2 $OPTIMNC" |
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| 178 | export F90FLAGS="-O2 $OPTIMNC" |
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[1590] | 179 | compile_with_fcm=1 |
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[2031] | 180 | elif [ $compilo = ifort ] ; then |
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| 181 | OPTIM="-O2 -fp-model strict -ip -align all " |
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| 182 | OPTDEV="-p -g -O2 -traceback -fp-stack-check -ftrapuv -check" |
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| 183 | OPTDEB="-g -no-ftz -traceback -ftrapuv -fp-stack-check -check" |
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| 184 | fmod='module ' |
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[1590] | 185 | if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi |
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[2031] | 186 | export CPP="icc -E" |
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| 187 | export FFLAGS="-O2 -ip -fpic -mcmodel=large" |
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| 188 | export FCFLAGS="-O2 -ip -fpic -mcmodel=large" |
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| 189 | export CC=icc |
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| 190 | export CFLAGS="-O2 -ip -fpic -mcmodel=large" |
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| 191 | export CXX=icpc |
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| 192 | export CXXFLAGS="-O2 -ip -fpic -mcmodel=large" |
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[1590] | 193 | compile_with_fcm=1 |
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[2031] | 194 | else |
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| 195 | echo unexpected compiler $compilo ; exit |
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[1588] | 196 | fi |
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[2031] | 197 | |
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[1589] | 198 | OPTIMGCM="$OPTIM $OPTPREC" |
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[1588] | 199 | |
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| 200 | hostname=`hostname` |
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| 201 | |
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| 202 | ########################################################################## |
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[1731] | 203 | # If installing on know machines such as IBM x3750 (Ada) |
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[1708] | 204 | # at IDRIS, don't check for available software and don"t install netcdf |
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[1777] | 205 | if [ ${hostname:0:5} = ada33 ] ; then |
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[1731] | 206 | netcdf=0 # no need to recompile netcdf, alreday available |
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| 207 | check_linux=0 |
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| 208 | pclinux=0 |
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| 209 | ioipsl=0 # no need to recompile ioipsl, already available |
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| 210 | #netcdf="/smplocal/pub/NetCDF/4.1.3" |
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| 211 | compilo="ifort" |
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| 212 | fmod='module ' |
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| 213 | if [ $real = r8 ] ; then OPTPREC="-real-size 64 -DNC_DOUBLE" ; fi |
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| 214 | OPTIM="-O2 -fp-model strict -ip -axAVX,SSE4.2 -align all " |
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| 215 | OPTIMGCM="$OPTIM $OPTPREC" |
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[1588] | 216 | fi |
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| 217 | ########################################################################## |
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| 218 | |
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| 219 | |
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| 220 | mkdir -p $MODEL |
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| 221 | echo $MODEL |
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[1708] | 222 | MODEL=`( cd $MODEL ; pwd )` # to get absolute path, if necessary |
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[1588] | 223 | |
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| 224 | |
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| 225 | |
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[1708] | 226 | # Option -fendian=big is only to be used with ARPEGE1D. |
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| 227 | # The -r8 should probably be avoided if running on 32 bit machines |
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| 228 | # Option r8 is not mandatory and generates larger executables. |
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| 229 | # It is however mandatory if using ARPEGE1D |
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| 230 | # Better optimization options might be a better choice (e.g. -O3) |
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[1588] | 231 | |
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| 232 | |
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| 233 | echo '################################################################' |
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| 234 | if [ "$check_linux" = 1 ] ; then |
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[1708] | 235 | echo Check if required software is available |
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[1588] | 236 | echo '################################################################' |
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| 237 | |
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| 238 | #### Ehouarn: test if ksh and/or bash are available |
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| 239 | use_shell="ksh" # default: use ksh |
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| 240 | if [ "`which ksh`" = "" ] ; then |
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[1708] | 241 | echo "no ksh ... we will use bash" |
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[1588] | 242 | use_shell="bash" |
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| 243 | if [ "`which bash`" = "" ] ; then |
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[1708] | 244 | echo "ksh (or bash) needed!! Install it!" |
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[1588] | 245 | fi |
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| 246 | fi |
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| 247 | |
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| 248 | |
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[2404] | 249 | for logiciel in wget tar gzip make $compilo gcc ; do |
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[1588] | 250 | if [ "`which $logiciel`" = "" ] ; then |
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[1708] | 251 | echo You must first install $logiciel on your system |
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[1588] | 252 | exit |
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| 253 | fi |
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| 254 | done |
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| 255 | |
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| 256 | if [ $pclinux = 1 ] ; then |
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| 257 | cd $MODEL |
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[2030] | 258 | cat <<eod > tt.f90 |
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[1588] | 259 | print*,'coucou' |
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| 260 | end |
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| 261 | eod |
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[1708] | 262 | $compilo tt.f90 -o a.out |
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[1588] | 263 | ./a.out >| tt |
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| 264 | if [ "`cat tt | sed -e 's/ //g' `" != "coucou" ] ; then |
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[1708] | 265 | echo problem installing with compiler $compilo ; exit ; fi |
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[1588] | 266 | \rm tt a.out tt.f90 |
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| 267 | fi |
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| 268 | fi |
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| 269 | |
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| 270 | ########################################################################### |
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| 271 | if [ $getlmdzor = 1 ] ; then |
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| 272 | echo '##########################################################' |
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[1708] | 273 | echo Download a slightly modified version of LMDZ |
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[1588] | 274 | echo '##########################################################' |
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| 275 | cd $MODEL |
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[2404] | 276 | if [ -f $dirget/modipsl.$version.tar.gz ] ; then |
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| 277 | tar xvf $dirget/modipsl.$version.tar.gz |
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| 278 | else |
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| 279 | $wget/modipsl.$version.tar.gz |
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| 280 | tar xvf modipsl.$version.tar.gz |
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| 281 | \rm modipsl.$version.tar.gz |
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| 282 | fi |
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[1588] | 283 | |
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[1708] | 284 | # We download LMDZ and make some modifications to make it |
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| 285 | #compatible with $compilo |
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| 286 | # and we use an old stable but robust and well tested version of ORCHIDEE |
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| 287 | # That version of ORCHIDEE can be obtained using |
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[1588] | 288 | # wget http://www.lmd.jussieu.fr/~lmdz/DistribG95/getlmdzor.x |
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| 289 | fi |
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| 290 | |
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| 291 | echo OK1 |
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| 292 | |
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| 293 | if [ $netcdf = 1 ] ; then |
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| 294 | echo '##########################################################' |
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[1708] | 295 | echo Compiling the Netcdf library |
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[1588] | 296 | echo '##########################################################' |
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| 297 | cd $MODEL |
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[2404] | 298 | if [ -f $dirget/netcdf-4.0.1.tar.gz ] ; then |
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| 299 | tar xvf $dirget/netcdf-4.0.1.tar.gz |
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| 300 | else |
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| 301 | $wget/netcdf-4.0.1.tar.gz |
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| 302 | tar xvf netcdf-4.0.1.tar.gz |
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| 303 | \rm -f netcdf-4.0.1.tar.gz |
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| 304 | fi |
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[1588] | 305 | |
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| 306 | cd netcdf-4.0.1 |
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| 307 | |
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[2030] | 308 | sed -e 's/gfortran/'$gfortran'/g' configure >| tmp ; mv -f tmp configure ; chmod +x configure |
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[1588] | 309 | localdir=`pwd -P` |
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[2203] | 310 | ./configure --prefix=$localdir --disable-cxx |
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[2030] | 311 | sed -e 's/gfortran/'$gfortran'/g' Makefile >| tmp ; mv -f tmp Makefile |
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[1588] | 312 | make check |
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| 313 | make install |
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[2030] | 314 | echo install.sh netcdf_OK `date` |
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[1731] | 315 | fi # of if [ $netcdf = 1 ] |
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[1588] | 316 | |
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[2030] | 317 | |
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[1800] | 318 | #======================================================================================= |
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[1588] | 319 | echo OK2 ioipsl=$ioipsl |
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| 320 | echo '##########################################################' |
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[1731] | 321 | echo 'Installing MODIPSL, the installation package manager for the ' |
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| 322 | echo 'IPSL models and tools' |
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[1588] | 323 | echo '##########################################################' |
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| 324 | |
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| 325 | if [ $netcdf = 0 -o $netcdf = 1 ] ; then |
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| 326 | ncdfdir=$MODEL/netcdf-4.0.1 |
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| 327 | else |
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| 328 | ncdfdir=$netcdf |
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| 329 | fi |
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| 330 | |
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| 331 | if [ $ioipsl = 1 ] ; then |
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[1731] | 332 | cd $MODEL/modipsl |
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[2030] | 333 | \rm -rf lib/* |
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[2031] | 334 | |
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[1731] | 335 | cd util |
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[1588] | 336 | |
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[1731] | 337 | cp AA_make.gdef AA_make.orig |
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[2031] | 338 | F_C="$compilo -c " ; if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then F_C="$compilo -c -cpp " ; fi |
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[2203] | 339 | if [ "$compilo" = "pgf90" ] ; then F_C="$compilo -c -Mpreprocess" ; fi |
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[1731] | 340 | sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp |
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[2203] | 341 | sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c -cpp:F_C = $F_C": \ |
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[1731] | 342 | -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ |
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| 343 | -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= '"$ncdfdir"'/include:' \ |
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| 344 | -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L'"$ncdfdir"'/lib -lnetcdf:' \ |
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| 345 | -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ |
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| 346 | -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ |
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| 347 | tmp >| AA_make.gdef |
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[1588] | 348 | |
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| 349 | |
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[1731] | 350 | if [ "$use_shell" = "ksh" ] ; then |
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| 351 | if [ "$pclinux" = 1 ] ; then |
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| 352 | ./ins_make -t g95 # We use lines for g95 even for the other compilers |
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| 353 | fi |
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| 354 | else # bash |
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| 355 | sed -e s:/bin/ksh:/bin/bash:g ins_make > ins_make.bash |
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| 356 | chmod u=rwx ins_make.bash |
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| 357 | if [ "$pclinux" = 1 ] ; then |
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| 358 | ./ins_make.bash -t g95 # We use lines for g95 even for the other compilers |
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| 359 | else |
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| 360 | ./ins_make.bash |
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| 361 | fi |
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| 362 | fi # of if [ "$use_shell" = "ksh" ] |
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| 363 | |
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[2031] | 364 | #======================================================================================= |
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[1731] | 365 | echo '##########################################################' |
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| 366 | echo 'Compiling IOIPSL, the interface library with Netcdf' |
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| 367 | echo '##########################################################' |
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| 368 | |
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| 369 | cd $MODEL/modipsl/modeles/IOIPSL/src |
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| 370 | if [ "$use_shell" = "bash" ] ; then |
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| 371 | cp Makefile Makefile.ksh |
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| 372 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
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[1588] | 373 | fi |
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| 374 | if [ "$pclinux" = 1 ] ; then |
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[1731] | 375 | # Build IOIPSL modules and library |
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[1800] | 376 | if [ $compilo = g95 ] ; then |
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| 377 | cp restcom.f90 restcom.f90.orig |
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| 378 | sed -e 's:cmode=or(NF90_NOCLOBBER,NF90_64BIT_OFFSET):cmode=NF90_NOCLOBBER:' restcom.f90.orig > restcom.f90 |
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| 379 | fi |
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[1731] | 380 | make clean |
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| 381 | make |
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[2031] | 382 | if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then # copy module files to lib |
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[1731] | 383 | cp -f *.mod ../../../lib |
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| 384 | fi |
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| 385 | # Build IOIPSL tools (ie: "rebuild", if present) |
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| 386 | if [ -f $MODEL/modipsl/modeles/IOIPSL/tools/rebuild ] ; then |
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| 387 | cd $MODEL/modipsl/modeles/IOIPSL/tools |
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| 388 | # adapt Makefile & rebuild script if in bash |
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| 389 | if [ "$use_shell" = "bash" ] ; then |
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| 390 | cp Makefile Makefile.ksh |
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| 391 | sed -e s:/bin/ksh:/bin/bash:g Makefile.ksh > Makefile |
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| 392 | cp rebuild rebuild.ksh |
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| 393 | sed -e 's:/bin/ksh:/bin/bash:g' \ |
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| 394 | -e 's:print -u2:echo:g' \ |
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| 395 | -e 's:print:echo:g' rebuild.ksh > rebuild |
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| 396 | fi |
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| 397 | make clean |
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| 398 | make |
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| 399 | fi |
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| 400 | fi # of if [ "$pclinux" = 1 ] |
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[1588] | 401 | |
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[1731] | 402 | else # of if [ $ioipsl = 1 ] |
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[1777] | 403 | if [ ${hostname:0:5} = ada33 ] ; then |
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[1731] | 404 | cd $MODEL/modipsl |
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| 405 | cd util |
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[1588] | 406 | |
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[1731] | 407 | cp AA_make.gdef AA_make.orig |
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| 408 | sed -e 's/^\#.*.g95.*.\#.*.$/\#/' AA_make.gdef > tmp |
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| 409 | sed -e "s:F_L = g95:F_L = $compilo:" -e "s:F_C = g95 -c:F_C = $compilo -c": \ |
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| 410 | -e 's/g95.*.w_w.*.(F_D)/g95 w_w = '"$OPTIMGCM"'/' \ |
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| 411 | -e 's:g95.*.NCDF_INC.*.$:g95 NCDF_INC= -I/smplocal/pub/HDF5/1.8.9/seq/include -I/smplocal/pub/NetCDF/4.1.3/include:' \ |
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| 412 | -e 's:g95.*.NCDF_LIB.*.$:g95 NCDF_LIB= -L/smplocal/pub/NetCDF/4.1.3/lib -lnetcdff -lnetcdf:' \ |
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| 413 | -e "s:-fmod=:-$fmod:" -e 's/-fno-second-underscore//' \ |
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| 414 | -e 's:#-Q- g95 M_K = gmake:#-Q- g95 M_K = make:' \ |
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| 415 | tmp >| AA_make.gdef |
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| 416 | |
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| 417 | ./ins_make -t g95 # We use lines for g95 even for the other compilers |
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| 418 | |
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| 419 | # on Ada, IOIPSL is already installed in ~rpsl035/IOIPSL_PLUS |
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| 420 | # so link it to current settings |
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| 421 | cd $MODEL/modipsl/modeles/ |
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| 422 | \rm -r -f IOIPSL |
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| 423 | ln -s ~rpsl035/IOIPSL_PLUS IOIPSL |
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| 424 | cd .. |
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| 425 | ln -s ~rpsl035/IOIPSL_PLUS/modipsl/bin/* bin/ |
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| 426 | ln -s ~rpsl035/IOIPSL_PLUS/modipsl/lib/* lib/ |
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| 427 | |
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[1777] | 428 | fi # of if [ ${hostname:0:5} = ada33 ] |
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[2030] | 429 | echo install.sh ioipsl_OK `date` |
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[1731] | 430 | fi # of if [ $ioipsl = 1 ] |
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| 431 | |
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[2030] | 432 | |
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[1800] | 433 | #============================================================================ |
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[1837] | 434 | veget_version=false |
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[1731] | 435 | if [ "$veget" = 1 ] ; then |
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| 436 | echo '########################################################' |
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| 437 | echo 'Compiling ORCHIDEE, the continental surfaces model ' |
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| 438 | echo '########################################################' |
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| 439 | cd $MODEL/modipsl/modeles/ORCHIDEE |
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[1800] | 440 | echo OKpwd ; pwd |
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[2430] | 441 | |
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| 442 | export ORCHPATH=`pwd` |
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| 443 | if [ -d tools ] ; then |
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| 444 | # orchidee_rev=2247 |
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[1837] | 445 | veget_version=orchidee2.0 |
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[2430] | 446 | cd arch |
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| 447 | fpp_flags='-P -traditional' |
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| 448 | sed -e s:"%COMPILER .*.$":"%COMPILER $compilo":1 \ |
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| 449 | -e s:"%LINK .*.$":"%LINK $compilo":1 \ |
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| 450 | -e s:"%FPP_FLAGS .*.$":"%FPP_FLAGS $fpp_flags":1 \ |
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| 451 | -e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \ |
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| 452 | -e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \ |
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| 453 | -e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \ |
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| 454 | -e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC -cpp":1 \ |
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| 455 | arch-gfortran.fcm > arch-local.fcm |
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| 456 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdf\"" > arch-local.path |
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| 457 | echo "NETCDF_INCDIR=${ncdfdir}/include" >> arch-local.path |
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| 458 | echo "IOIPSL_INCDIR=$ORCHPATH/../../lib" >> arch-local.path |
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| 459 | echo "IOIPSL_LIBDIR=$ORCHPATH/../../lib" >> arch-local.path |
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| 460 | cd ../ |
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| 461 | # compiling ORCHIDEE sequential mode |
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| 462 | ./makeorchidee_fcm -noxios -prod -parallel none -arch local |
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[1800] | 463 | else |
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[2430] | 464 | if [ -d src_parallel ] ; then |
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| 465 | liste_src="parallel parameters global stomate sechiba driver" |
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| 466 | veget_version=orchidee2.0 |
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| 467 | else |
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| 468 | # Obsolete, for ORCHIDEE_beton only |
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| 469 | liste_src="parameters stomate sechiba " |
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| 470 | # A trick to compile ORCHIDEE depending on if we are using real*4 or real*8 |
---|
| 471 | cd src_parameters ; \cp reqdprec.$real reqdprec.f90 ; cd .. |
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| 472 | veget_version=orchidee1.9 |
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| 473 | fi |
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| 474 | for d in $liste_src ; do src_d=src_$d |
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| 475 | echo src_d $src_d |
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| 476 | echo ls ; ls |
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| 477 | if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi |
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| 478 | cd $src_d ; \rm -f *.mod make ; make clean |
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| 479 | make ; if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then cp -f *.mod ../../../lib ; fi |
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| 480 | cd .. |
---|
| 481 | done |
---|
[1800] | 482 | fi |
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[2203] | 483 | echo liste_strc $liste_src |
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| 484 | |
---|
| 485 | for d in $liste_src ; do src_d=src_$d |
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| 486 | echo src_d $src_d |
---|
| 487 | echo ls ; ls |
---|
| 488 | if [ ! -d $src_d ] ; then echo Problem orchidee : no $src_d ; exit ; fi |
---|
| 489 | cd $src_d ; \rm -f *.mod make ; make clean |
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| 490 | make ; if [ "$compilo" = "$gfortran" -o "$compilo" = "mpif90" ] ; then cp -f *.mod ../../../lib ; fi |
---|
| 491 | cd .. |
---|
| 492 | done |
---|
[2030] | 493 | echo install.sh orchidee_OK `date` |
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[1731] | 494 | fi # of if [ "$veget" = 1 ] |
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[1588] | 495 | |
---|
[2030] | 496 | |
---|
[1800] | 497 | #============================================================================ |
---|
[1588] | 498 | # Ehouarn: it may be directory LMDZ4 or LMDZ5 depending on tar file... |
---|
[1800] | 499 | if [ -d $MODEL/modipsl/modeles/LMDZ[45] ] ; then |
---|
[1588] | 500 | echo '##########################################################' |
---|
[1800] | 501 | echo 'Compiling LMDZ' |
---|
[1588] | 502 | echo '##########################################################' |
---|
[1800] | 503 | cd $MODEL/modipsl/modeles/LMDZ[45] |
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[1588] | 504 | else |
---|
[1800] | 505 | echo "ERROR: No LMDZ4 (or LMDZ5) directory !!!" |
---|
| 506 | exit |
---|
[1588] | 507 | fi |
---|
| 508 | |
---|
| 509 | ########################################################### |
---|
[1708] | 510 | # For those who want to use fcm to compile via : |
---|
[1588] | 511 | # makelmdz_fcm -arch local ..... |
---|
| 512 | ############################################################ |
---|
| 513 | |
---|
[2031] | 514 | if [ "$pclinux" = "1" ] ; then |
---|
| 515 | |
---|
[1708] | 516 | # create local 'arch' files (if on Linux PC): |
---|
[1588] | 517 | cd arch |
---|
[1708] | 518 | # arch-local.path file |
---|
[1590] | 519 | echo "NETCDF_LIBDIR=\"-L${ncdfdir}/lib -lnetcdf\"" > arch-local.path |
---|
| 520 | echo "NETCDF_INCDIR=-I${ncdfdir}/include" >> arch-local.path |
---|
[1588] | 521 | echo 'IOIPSL_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
| 522 | echo 'IOIPSL_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
| 523 | echo 'ORCH_INCDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
| 524 | echo 'ORCH_LIBDIR=$LMDGCM/../../lib' >> arch-local.path |
---|
[1708] | 525 | # arch-local.fcm file (adapted from arch-linux-32bit.fcm) |
---|
[2031] | 526 | |
---|
| 527 | if [ $real = r8 ] ; then FPP_DEF=NC_DOUBLE ; else FPP_DEF="" ; fi |
---|
| 528 | sed -e s:"%COMPILER .*.$":"%COMPILER $compilo":1 \ |
---|
| 529 | -e s:"%LINK .*.$":"%LINK $compilo":1 \ |
---|
| 530 | -e s:"%PROD_FFLAGS .*.$":"%PROD_FFLAGS $OPTIM":1 \ |
---|
| 531 | -e s:"%DEV_FFLAGS .*.$":"%DEV_FFLAGS $OPTDEV":1 \ |
---|
| 532 | -e s:"%DEBUG_FFLAGS .*.$":"%DEBUG_FFLAGS $OPTDEB":1 \ |
---|
| 533 | -e s:"%BASE_FFLAGS .*.$":"%BASE_FFLAGS $OPTPREC":1 \ |
---|
[2203] | 534 | -e s:"%FPP_DEF .*.$":"%FPP_DEF $FPP_DEF":1 \ |
---|
[2031] | 535 | arch-linux-32bit.fcm > arch-local.fcm |
---|
| 536 | |
---|
[1588] | 537 | cd .. |
---|
[1708] | 538 | ### Adapt "bld.cfg" (add the shell): |
---|
[1588] | 539 | whereisthatshell=$(which ${use_shell}) |
---|
| 540 | echo "bld::tool::SHELL $whereisthatshell" >> bld.cfg |
---|
| 541 | |
---|
[1731] | 542 | fi # of if [ "$pclinux" = 1 ] |
---|
| 543 | |
---|
| 544 | |
---|
| 545 | cd $MODEL/modipsl/modeles/LMDZ? |
---|
| 546 | |
---|
[1588] | 547 | ################################################################## |
---|
[1708] | 548 | # Compile LMDZ |
---|
[1588] | 549 | ################################################################## |
---|
[2030] | 550 | echo install.sh avant_compilation `date` |
---|
[2404] | 551 | if [ $compile_with_fcm = 1 ] ; then makelmdz="makelmdz_fcm -j 8 -arch local" ; else makelmdz=makelmdz ; fi |
---|
[2031] | 552 | |
---|
| 553 | ./$makelmdz -d ${grid_resolution} -v $veget_version gcm |
---|
[2030] | 554 | echo install.sh apres_compilation `date` |
---|
[1588] | 555 | |
---|
[2030] | 556 | |
---|
[1731] | 557 | if [ -f gcm.e ] || [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] || [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then |
---|
[1588] | 558 | echo '##########################################################' |
---|
[1731] | 559 | echo 'Compilation successfull !! ' |
---|
[1588] | 560 | echo '##########################################################' |
---|
| 561 | else |
---|
[1731] | 562 | echo 'Compilation failed !!' |
---|
[1588] | 563 | exit |
---|
| 564 | fi |
---|
| 565 | |
---|
| 566 | ################################################################## |
---|
[1708] | 567 | # Below, we run a benchmark test (if bench=0) |
---|
[1588] | 568 | ################################################################## |
---|
| 569 | if [ $bench = 0 ] ; then |
---|
| 570 | exit |
---|
| 571 | fi |
---|
| 572 | |
---|
| 573 | echo '##########################################################' |
---|
[1731] | 574 | echo ' Running a test run ' |
---|
[1588] | 575 | echo '##########################################################' |
---|
| 576 | |
---|
[2030] | 577 | \rm -rf BENCH${grid_resolution} |
---|
[1588] | 578 | bench=bench_lmdz_${grid_resolution} |
---|
[2030] | 579 | echo install.sh avant_chargement_bench `date` |
---|
[2404] | 580 | if [ -f $dirget/$bench.tar.gz ] ; then |
---|
| 581 | tar xvf $dirget/$bench.tar.gz |
---|
| 582 | else |
---|
| 583 | $wget/$bench.tar.gz |
---|
| 584 | echo install.sh apres_chargement_bench `date` |
---|
| 585 | tar xvf $bench.tar.gz |
---|
| 586 | fi |
---|
[1588] | 587 | |
---|
| 588 | if [ -f gcm.e ] ; then |
---|
| 589 | cp gcm.e BENCH${grid_resolution}/ |
---|
| 590 | elif [ -f bin/gcm_${grid_resolution}_phylmd_seq_orch.e ] ; then |
---|
| 591 | cp bin/gcm_${grid_resolution}_phylmd_seq_orch.e BENCH${grid_resolution}/gcm.e |
---|
| 592 | elif [ -f bin/gcm_${grid_resolution}_phylmd_seq.e ] ; then |
---|
| 593 | cp bin/gcm_${grid_resolution}_phylmd_seq.e BENCH${grid_resolution}/gcm.e |
---|
| 594 | else |
---|
| 595 | echo "No gcm.e found" |
---|
| 596 | exit |
---|
| 597 | fi |
---|
| 598 | |
---|
[2030] | 599 | |
---|
[1588] | 600 | cd BENCH${grid_resolution} |
---|
| 601 | ./bench.sh > bench.out 2>&1 |
---|
| 602 | |
---|
[2030] | 603 | |
---|
[1588] | 604 | echo '##########################################################' |
---|
[1708] | 605 | echo ' Bench results ' |
---|
[1588] | 606 | echo '##########################################################' |
---|
| 607 | |
---|
| 608 | cat ./bench.out |
---|
[2030] | 609 | echo install.sh FIN_du_BENCH `date` |
---|
[1588] | 610 | |
---|
| 611 | echo '##########################################################' |
---|
[1708] | 612 | echo 'Simulation finished in' `pwd` |
---|
| 613 | echo 'You may re-run it with : cd ' `pwd` ' ; gcm.e' |
---|
| 614 | echo 'or ./bench.sh' |
---|
[1588] | 615 | echo '##########################################################' |
---|
[2030] | 616 | |
---|
[2031] | 617 | if [ "$gfortran" = "gfortran44" ] ; then |
---|
[2030] | 618 | echo Your gfortran compiler was too old so that the model was automatically |
---|
| 619 | echo compiled with gfortran44 instead. It can not be used in parallel mode. |
---|
| 620 | echo You can change the compiler at the begining of the install.sh |
---|
| 621 | echo script and reinstall. |
---|
| 622 | fi |
---|